>LTR7C_chr6_2ltr_int_fr_1262__chr6_6788906267889473__
------------------------------------------------------------
--------------------------------AGCCATCGTGACCCCTGTGACCCAC---
---------AGAAGGT------------------CTCCTGGAGCCAGAAAGTCTAGGACA
ACA--GGAAAACCACAAAAGAAGAA-AAACGGCT--------------------------
------------------AGTTCCTGTCTTAGCTGAT-------------TAGCCAACCT
TGCA--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CTGTCATTGTAACAGGCT-------TACCCTA
ACTGATCAATCAACC--------TC--GTGACACT-------------------------
GTGCTCTG------------TAAC------------------------------------
------------------------------------------------------------
------------------------------------------------------------
---------------------CTTGTGATAATG----TACCTTATG--------------
---------------------------ACATTCTTCCCC-TGCCCGCAATAA-ACGG-CT
CC----TAACTGTAACTTTCCGGTGCTTACCTC-TAACTGATAA-----------AACTA
GCTCCAA-C-C--CACCACCCTCCACTGACTTCCT--TCGCACTCAGCCCACTCGCACCC
GGGTG-------A-ATAAACAGCCTTGTTGCTCACACTTAGCCTG--TTC-AAGTTGTCT
CTTCAATTAGATGCTCGTA-----A--C-
>LTR7C_chr4_Sltr_fr_1066__chr4_7921006979210500__
------------------------------------------------------------
--------------------------------AGCCATTATGATCCCTGTGATCCACACG
TACACATCCAGAAGGT------------------CTCCTGGAGCCAGAAAGTCTGGGACA
ACA--GGAAAACCACAAAGGAAGAA-AAACAGCT--------------------------
------------------AGTTCCTGTCTTAGCTGAT-------------TAGCCAGCCT
TGCA--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CTACCCTTGTAACATGCTC------TACCCTA
ACTGA----TCAACC--------TC--GTGACACT-------------------------
GTGCCCTG------------TGACCCCTCC-CA---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------CCTTGTGATAATG----TACCTTGTG--------------
---------------------------ACATTCTTCCCC--GCCCGCAATAA-ACGT-CC
CC----TAACTGTAACTTTCCACTGCTTAGCCC-TAACCTGTAA-----------AACTA
GCTCCAATC-C--CGCCACCCTCCACTGACTCCCTTTTCAGACTCAGCCCACTCGCACCC
GAGTG-------A-ATCAACAGCCTTGTTGCTCACACTTAGCCTG--TTC-AGGTTGTCT
CTTCAATTAGACACATGTA-----A--C-
>LTR7C_chr8_Sltr_fr_1385__chr8_134922656134923091__
------------------------------------------------------------
--------------------------------AGCCATTATAACCCCTGTGACACACACA
TACACATCCAGAAGGT------------------CTCCTGGAGTCAGAAAGTCTGGGACA
ACG--GGAAAACCACAAAAGAAGAA-AAACAGCC--------------------------
------------------AGTTCCTGTCTTAGCTGAT-------------TAGCCAACCT
TGCC--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CTACCATTGTAACATGCTC------TACCCTA
ACTGATCAATCAACC--------TC--GTGACACT-------------------------
GTGCTCTG------------TGACCCCTCC-CA---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------CCTTGTGATAATG----TACCTTGGG--------------
---------------------------ACATTCTTCCCC-TGCCCACAATAA-AGGG-CC
CC----TAACTGTAACTTTCCACTGCTTACCCC-TAACCTGTAA-----------AACTA
GCTCCAATC-C--CACCACCCTCCACTGACTCCCTTTTTGGACTCAGCCCACTCACACCC
AAGTG-------A-ATAAACAGCCTTGTTGCTCACACTTAGCCTG--TTC-AGGTTGTCT
CTTCAATTAGACGCACGTA-----A--C-
>LTR7C_chr6_Sltr_fr_1245__chr6_2898093228981360_+_
------------------------------------------------------------
---------------------------------GGCATTGTGACCCCTGTGACCCACACG
TACACATCCAGAAGGT------------------CTCCTGGAGCCAGAAAGTCTGGGACA
ACA--GGAAAACCACAAAAGAAGAA-AAACAGC---------------------------
---------------------TCCTGTCTTAGCTGAT-------------TAGCCAACCT
TGCG--------------------------------------------------------
----------------------------------------------------------AC
CTT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CTACCATTGTAACATGCTC------TACCCTA
ACTGATCAATCAACT--------TC--GTGACACT-------------------------
GTGCTCTG------------TGACCCCTCC-CA---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------CCTTGTGATAATG----TACCTTGTG--------------
---------------------------ACATTCTTCCCT-TGCCCGCAATAA-ACGG-GC
CC----TTATTGTATCTTTCCACTGCTTACTCC-TAACCTATAA-----------AACTA
GCTGCAATC-C--CACCACCCTCCGGTGACTCCCTTTTCGGACTCAGCCCGCTCGGACCA
GAGTG-------A-ATAAACAG-CTTGTTGCTCACACTTAGCCTG--TTC-AGGTTGTCT
CTTCAGTTAGACGCGCG------------
>LTR7C_chr13_Sltr_fr_373__chr13_8266101582661469__
--------------GCTATGG---------------------------------------
-----------------------------CCAAGCCATTGAGACCCCTGTGACCTACACG
TACACATCCAGAAGTT------------------CTCCTGGAGCCAGTTAGTCTGGGACA
ACA--GGAAAACCCCAAAAGAAGAA-AAACCGCT--------------------------
------------------AGTTCCTGTCTTAGCTGAT-------------TAGCCAACCT
TGCG--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CTACCATTGTAACCTGCTC------TACCCTA
ACTGATGAATCAACC--------TT--GTGACACT-------------------------
GTGCCCTG------------GGACCCCTCC-CA---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------CCTTGTGATAATG----TACCTTGTG--------------
---------------------------GCATTCTTCCCC-TGCCTGCAATAA-ACAG-CC
CC----TAACTGTAACTTTCCACTGCTTACCAC-TAACCTATAA-----------AACTA
GCTCCAATC-C--CACCACCCTCCTCTGACTCCCTTTTCGGACTCAGCCCGCTCACACCT
GAGTG-------A-ATAGACAGTCTTATTGCTCACACTTAGCCTG--TTC-AGGTGCTCT
CTTCAATTACACACATGTC-----A--C-
>LTR7C_chr19_Sltr_fr_605__chr19_5604527656045989__
------------------------------------------------------------
--------------------------------AGCCATGGTGACCTCTGTGACCCACATG
TACACATCCAGAAGGC------------------CTCTTGGAGCCAGAAAGTCTAGGATA
ACA--GGAAAACCACAGAAGA---A-AAACAGCT--------------------------
------------------AGCTCCTGTCTTAGCTGAT-------------TAGCCAACCT
-GCA--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CTATCATTGTAACATGCTC------TACCCTA
ACTGATCAATCAACC--------TT--GTGGCATT-------------------------
GTGCCCTG------------TGACCCCTCC-CA---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------CCTTGTGACAGTG----TACCATGTG--------------
---------------------------ACATTCTTCCCC-TGCCCGCAATAA-ACGG-TC
CC----AGACTGTTACTTTCCACTGCTTATCCC-TAACCGATAA-----------AACTA
GCTCCAATC-C--CATCACCCTTCGCTGACTCTCTTTTCAGACTCAGCCCGCTCACACCC
AAGTG-------A-ATACACAGCCTTGTTGCTCACACTTAGCCTG--TTC-AGGTTGTCT
CTTCACTTAGATGCATGTA-----A--C-
>LTR7C_chr3_Sltr_fr_862__chr3_162601133162601560_+_
------------------------------------------------------------
---------------------------------GCCATCATGACCTCTGTGATCCACACA
TACACATCCAGAAGGC------------------TTCCTGGAGCCAGAAAGTCTAGGACA
ACA--GAAAAACCTCAAAAGAAGCA-AAAGAGCT--------------------------
------------------AGCTCCCGTCTTAGCTGAT-------------TAGCCAACCT
TGCA--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------GTACCATTGTAACATGCTC------TACCCTA
ACTGATCAATCAACC--------TT--GAGACATT-------------------------
GTGCCCTG------------TGACCCCTCC-TG---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------CTTTGTGACAATG----TACCTTGTG--------------
---------------------------ACATTCTTCCCC-TGCCTGCAATAA-ACAG-CC
CC----TAACTGTAACTTTCCACTGCTTACCCC-TAACCTATAA-----------AACTA
ACTCCAATC-C--CACCACCCT-CACTGACTCTCTTTTTGAACTCAGCCCGCTCACACCC
GAGGG-------A-ATAAACAGCCTTGTTGCTCACACTTAGCCTG--TTC-AGATTATCT
CTTCATTTAGACGCACG------------
>LTR7C_chrX_Sltr_fr_1502__chrX_114047519114047965__
TGTAAGGCCTCTGAACCATGG---------------------------------------
-----------------------------TCAAGCCATCGTGACCCCTGTGACCCACACG
TACACATCCAGAAGGT------------------TTCCTGGAGCCAGAAAGTCTGAGACA
ACA--GGAAAAGCACAAGAGAAGAA-AAACAGCT--------------------------
------------------AGTTCCTGTCTTAGTCCAT-------------TAGCCAAGCT
TGCA--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CTATCATTGTAACATGCTC------TACCTTA
ACTGATCAATCAACC--------TC--G--------------------------------
--------------------TGACCCCTCC-CA---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------CCTTGTGATAATG----TACCATGTG--------------
---------------------------ACATCCTTCCCC-TGCCGGCAAAAA-ACGG-CC
CC----C-ATTGTAACTTTCCACAGCTTACCCC-TAACCTAGAA-----------AACCA
GCTCCAATC-C--CACCACCCTCCGCTGACTCCCTTTTCAGACTCAGCCCTCTCCCACCT
GGGTG-------A-ATAAACAGCCTCGTTGCTCACACTTAGCCGG--TTC-AGGTTGTGT
CTTCAATTAGACGCGC-------------
>LTR7C_chr9_Sltr_fr_1455__chr9_2599464025995063_+_
--------------GCCATGG---------------------------------------
-----------------------------TCAAGCCGTCATGACCCCTGTGACCCACACG
TACACATCCAGAAGGT------------------CTCCTGGAGCCAGAAAGTCTGGCACA
ACA--GGAAAACCACAACAGAAGAA-AAACAGCT--------------------------
------------------AGTTCCTGTCTTAGCTGAT-------------TAGCCAAACT
TGCG--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CTACCATCGTAACAGGCTC------TACCCTA
ACTGATCAATCAACC--------TC--GTGACACT-------------------------
CAGCTCTG------------TAA-------------------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------ATGTGTGATAATG----TACCTTGTG--------------
---------------------------ACATTCTTCCAC-TGCCTGCAAAAA-CTGG-CC
CC----TAACTGTAACTTTCCACTGCCTAACCC-TAACCTATAA-----------AACCA
-CTCCAATC-C--CACCACCTGCTGCTGACTCCCTTTTCAGACTCAGCCTGTTCACACCC
AAGTG-------A-ATAAAC-GCCTTGTTGCTTACATTTGGCCTG--TTC-TGGTTGTCT
CTTCA------------------------
>LTR7C_chr1_Sltr_fr_70__chr1_247079361247079802__
TGTAAGGCGTCTGAGCCATGG---------------------------------------
-----------------------------TCAAGCCATTGTGATCCCTGTGACCCACACG
TGTACATCCAGAAGG--------------------TCCTGGAGCCAGAAAGTCTGGGACA
ACA--GGAAAACCACAAAGGAAGAA-AAACGGCT--------------------------
------------------AGTTTCTGTCTTAGCTGAT-------------TAGCCAACCT
TGCA--------------------------------------------------------
----------------------------------------------------------GC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------TTACCGTTGTGACGTGCAC------TACCCTA
ACTGATCAATCAGCC--------TA--GTGACA---------------------------
-----CTG------------TGACCCCTCC-C----------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------TCTTGTGACAATG----TACTTTGTG--------------
---------------------------ACATTCTTCCCC-CGCCGGTAATAA-ACGG-CC
CC----TGACTGTAACTTTCCACTGCTTACCCC-TCACCTATAA-----------AACTA
ACTCCAATC-C--CACGACCCTCCGCTGACCCTCTTTTCGGACTCAGCCCGCTCGCACCC
GAGTG-------A-GTAAACAGCCTTGCTGCTCACACTTAACCTG--TTT-GGGTAGTCT
CTTC-------------------------
>LTR7C_chr4_Sltr_fr_1046__chr4_2084517320845604_+_
------------------------------------------------------------
---------------------------------GCCATCATGACCCCTGTGACCCACATG
TACACATCCAGAAGT--------------------TCTGGGAGCCAGAAAGTCTGGGACA
ACA--GGAAAACCACTAAAGAAGAA-AAATGGCT--------------------------
------------------AGTACCTGTCTTAGCTGAT-------------TAGGTAACCC
TGCG--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CTACCATTCTAGCATGCTC------TACCCTA
ACTGATCAATCAACC--------TA--GTGACACT-------------------------
GTGCTCTA------------TGACCCCTCC-CA---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------CCTTGTGATAATG----CACCTTGCA--------------
---------------------------ACCTTCTTCCCC-TGCCCACAATAA-ATGG-CC
CC----TAACTGTAACTTTCCACTGCTTA-CCC-TAATCTATGA-----------AATTA
GCTCCAATC-C--CACCACCCTCTGCTGACTCCCTTTTTGGACTCAGCCCGCTCACATCC
AGGTG-------A-ATAGACAGTCTTGTTGCTCACACTTAGCCTG--TTC-AGGTTGTCT
CTTCAATTAGATGCGC-------------
>LTR7C_chr1_Sltr_fr_18__chr1_166471418166471848_+_
------------------------------------------------------------
---------------------------------GCCATTGTGACCCCTGTGACCCACACG
TAT---------AGGC------------------TTCCTGGAGTCACAAAGCCTGGAGCA
ACA--GGAGATCCACTAAAGAAGAA-AAACAGCT--------------------------
------------------GGTTCCTGTCTTAACTGAT-------------TAACCAACCT
TGCA--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CCACCATTGTGATATGCTCCTGCCCTACCCTA
AGTAATCGATCGACC--------TT--GTGATATC-------------------------
GTGCCTTG------------TGACCTCCCC-CA---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------CCTCGTGACTATG----CACCTTGTG--------------
---------------------------ACATTCTTCCCC-TGCCCA-AAAAA-ACTG-CC
CC----TAACTGTAACTTTCCACTACCTACCCC-AAACCAATGA-----------AACCA
GTTCCACTC-C--CACCACCCTTCGCTGACTCCTTTCTCGGACTCAGCCCACTTGCACCC
AAG------------TAAACAGCCTTGTTGCTCACACTAAGCCTG--CTC-AGGTGGTCT
CTTA---TACAGATGAGTA-----A--CA
>LTR7C_chr7_Sltr_1340__chr7_3755138337551850__
TGTAAGGCCTCTGAACAATGG---------------------------------------
-----------------------------TTGAGCCATTGTGACTCCTGTGACCCACACA
TAC---------AGGC------------------CTCCTGCAGTCACAAAGCCTGGAGCA
ACA--AGAGAAGCACTAAAGGAGAA-AAACAGCT--------------------------
------------------AGTTCCTGCCTTAACTGAT-------------TAACCAACCT
TGCA--------------------------------------------------------
----------------------------------------------------------AC
AAT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CCACCAATGTGATATATTCCTGCCCTACCCTA
AATAATCAATTGACC--------CC--GTGATATC-------------------------
GTGCATTG------------TGACCTCCTC-CA---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------CCTTGTGACTATG----CACCCTGTG--------------
---------------------------ACATTCTTCCCC-TGCCCA-AAAAA-ACTG-CC
CC----TAACTATAACTTTCCACTACTTACCCC-AAACCTATAA-----------AACCA
GTTCCCCTC-C--CACCACCCTTCGCTGACTCCTTTCTCGGACTCAGCCCACTTCCACCC
AAG------------TAAACAGCCTTGTTGCTCACATTTAGCCTG--TTC-AGGTTGTCT
CTTA---ATTAGATGTGTA-----A--C-
>LTR7C_chrX_Sltr_fr_1550__chrX_3549673235497164_+_
------------------------------------------------------------
-----------------------------TTGAGCCACTGTGACCCCTGTGACCCACACA
TAC---------AGGC------------------CTCCTGGAGTCACAAAGCCTGGAGCA
ACA--GGAGAACCACTAAAG---AA-AAACAGCT--------------------------
------------------AGTTCCTGCCTTAACCGAT-------------TAACCGACGT
TGCA--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CCACCATTGTGATACGTTCCTGCCCTACCCTA
ACTAATCAATCAACC--------TT--GTGATATC-------------------------
GTGCCTTG------------TGACCTCCCC-CA---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------CCTTGTGACTATG----CACCTTGTG--------------
---------------------------ACATTCTTCTCC-TGCCCG-AAAAA-ACTG-CC
CC----TAACTGTAACTTTCTACTACCTACCCC-AAACCTATAA-----------AACCA
GTTCCACTC-C--CACCACACTCTGCTGACTCCTTTCTTGGACTCAGCCCACTTGCACCC
AAG------------TAAGCAGCTTTGTTGCTCACACTAAGCCTG--CTC-AGGTGGTCT
CTTA---CACGGATGTGTA-----A--CA
>LTR7C_chr16_Sltr_fr_462__chr16_1033964510340071__
------------------------------------------------------------
--------------------------------AGCCATTGTGACCCCTGTGACCCACACA
TAC---------AGGC------------------CTCCTGGAGTCACAAAGCCTGGAGCA
ACA--AGAGAACCACTAAAGAAGAA-AAACAGCT--------------------------
------------------AGTTCCTGCCTTAACTGAT-------------TAACCAAATT
TGCA--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CCACCATTGTCATATGTTCCTGCCCTACCCTA
ACTAATCAATCGACC--------TT--GTGATACG-------------------------
GTGCCTTG------------TGACCTCCCC-CA---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------CCTCATGACTATG----CATCTTATG--------------
---------------------------ACATTCTTCCCC-TGCCCA-AAAAA-ACTG-CC
CC----TAAATGTAACTTTCCTCTTCCTACCCC-AAACCTATAA-----------AACCA
GTTCCACTC-C--CACCACCCTTCATTGACTCCTTTCTCAGACTCAGCCGACTTGCACCC
AAG------------TAAACAGCCTTGTTGCTCACACTAATCCTA--CTC-AGGTGTTCC
CTTA---TAAAGATGTGTA-----A--C-
>LTR7C_chr9_Sltr_fr_1431__chr9_105435287105435702__
------------------------------------------------------------
--------------------------------AGCCATTGTGACCCCTCTGACCCACACA
TAC---------AGGC------------------CTCCTGGAGTCACAAAGCCTGGAGCA
ACA--GGAGAACCACTAAAGAAAAA-AAACAGCT--------------------------
------------------AGTTCCTGCCTTAACTGAT-------------TAACCAACTT
TGCA--------------------------------------------------------
----------------------------------------------------------GC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CCACCATTGTGATATGTTCCTGCCCTGCCCTA
ACTAATCAGTCGACC--------TT--GTGATATC-------------------------
GTGCCTTG------------TGACCTCCCC-CA---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------CCTCATGACTATG----CACCTTGTG--------------
---------------------------ACATTCTTCCCC-TGTCC--AAAAA-ACAG-CC
CC----TAACTGTAACTTTCCATTACCTACCCC-AAACCTATAA-----------AACCA
GTTCCACTC-C--CAACACTCTTTGCTGACTCCTTTCTCGGACTCAGCCCACTTGCACCC
AGG------------TTAACAGCCTTGCTGCTCACACTTAGCCTG--TTT-GGGTAGTCT
CTT------------------------C-
>LTR7C_chr19_Sltr_fr_576__chr19_2303989123040320_+_
------------------------------------------------------------
---------------------------------GCCATTGCAACCTCTGTGACCCACATG
TAC---------AGGC------------------CTCCTGGAGTCACAAAGCCTGTAGCA
ACA--GGAGAACCACTAAAGAAGAA-AAACAGCT--------------------------
------------------AGTTCCTGCCTTAACTGAT-------------TAACCAACCT
TGCA--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CCACCATTGTGATATGTTGCTGCCCTTCCCTA
ACTAATCAATCGACT--------TT--GTGATATC-------------------------
GTGCCTTG------------TAACCTCCCC-CA---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------CCTCGTGACTATG----CACCTTGTG--------------
---------------------------ACATTCTTCCCC-TGCCTG-AAAAA-ACTG-CC
C-----TAACTGTAACTTTCCACTACCTACCCC-AAACCTATAA-----------AACCA
CTTCCACTG-A--CACCACCCTTTGCTGACTCCCTTTTTGGACTCAGCTCATTCGCACCT
GAGTG-------A-ATAAACAGCCTTGTTGCTCACAGTAAGCCTG--CTA-AGGTGGTCT
CTTA---TACAGATGCATA-----A--CA
>LTR7C_chr3_Sltr_fr_865__chr3_162732048162732457_+_
------------------------------------------------------------
---------------------------------GCCATTATGACCCCTGTGACCCACACG
TAC---------AGGC------------------CTCCTGGAGTCACAAAGCCTGGAGCA
ACA--GGAGAACCACTAACGATGAA-AAACAGCT--------------------------
------------------AGTTCCTGCCTTAACTGAT--------------AACAGACCT
TGCA--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CCACCATTGTGG--------------------
---AATCAGTCGACC--------TT--GTGATATC-------------------------
GTGCCTTG------------TGACCTCCCC-CA---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------CCTTGTGACTATG----CACCTTGTG--------------
---------------------------ACATTCTTCCCC-TGCCTG-AAAAA-TCTG-CC
CC----TAAATGTAACTTTCCACTACCTACCCC-AAACCTATAA-----------AACCA
GTTCCACTC-C--CACCACCCTTCCCTGACTCTCTTTTCAGACTCAGCCCGCTTGCACCC
GAGTG-------A-GTAAATAGCCATGTTGCTCACAGTTAGGCTG--ATT-GGGTACTCT
CTTC---TAGGCACACATA-----A--CA
>LTR7C_chr4_Sltr_fr_978__chr4_120520859120521293_+_
------------------------------------------------------------
-----------------------------TTGAGCCATTGTGACCCCTGTGACACACACA
TGC---------AGGC------------------CTCCTGGAGTCGCAAAGCCTGCAGCA
ACA--GGAGAACCACTAAAGAAG---AAACATCT--------------------------
------------------AGTTCCTGCCTTAACTGAT-------------TAACCAATCT
TGCA--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CCACCACTGTGATATGTTTCTGCCCTACCCTA
ACTAATCAATCAACC--------TT--GTGATATC-------------------------
CTGTCTTG------------TGGCATCCCC-CA---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------CCTCATGACTATG----CACCTTGTG--------------
---------------------------ACATTCTTCCCC-TGCCCG-AAAAA-ACTG-CC
CC----TAACTGTAACTTCCCATTACCTACCCC-AAACCTATAA-----------AACCA
GTTCCACTT-C--CACCACCCTTCACTGACTCCTTTCTGGAACTCAGCCTGCTCGCACCT
GAGTG-------A-ATAAACAGCCTTGCTGCTCCCACCTAGCCTG--TTT-GAGTAGTCT
TTTC---TAGGTGTGTGTA-----A--CA
>LTR7C_chr8_Sltr_fr_1368__chr8_112201866112202295_+_
------------------------------------------------------------
---------------------------------GTCATTGTGACCCCTGTGACCCACACA
TAC---------AGGT------------------CTCCTGGAGTCACAAAGCCTGGAGCA
ACA--GGAGAACCACTACAGAAG---AAACAGCT--------------------------
------------------AGTTCCTGCCATAACGGAT-------------TAACCGACCT
TGAA--------------------------------------------------------
----------------------------------------------------------AC
GTT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CCACCATTGTGATATGTTCCTGCCCTACCCTA
ACTAATCAATCTACC--------TT--GTGATATC-------------------------
GTGCCTTG------------TGGCCTCCCC-CA---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------CCTGGTGACTATG----CACCTTGTG--------------
---------------------------ACTTTCTTCCCC-TGCCCG-AAAAG--CTG-CC
CC----TAACTGTAACTTTCCACTACCTACCCC-AAACCTATAA-----------AACCA
GTTCCACTC-C--CACCACCCTTTACTGACTGCCTTTCCGGACTCAGCCCACTTGCACCT
GAGTG-------A-ATAAACAGCCTTATTGCTCACACTTAGCCTG--TTT-GGGTAGTCT
CTTC---TAGGCATGCGTA-----A--CA
>LTR7C_chr9_Sltr_fr_1463__chr9_39008613901293_+_
------------------------------------------------------------
---------------------------------GCCATTGTGACCCCTGCGACACACAGG
TCC---------AGGC------------------CTCCTGGAGTCACAAAGCTTTGAGCA
ACA--GGAGAACCACTAAAGAAGAA-AAACAGCT--------------------------
------------------AGCTCCTGCCTTAACTGAT-------------TAACCGAACT
TGCA--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CCACCATTGTGATATGTTCCTGCCCTACCCTA
AATAATCAATCGGCC--------TT--GTGATATC-------------------------
CTGCCATG------------TGAACTCCCT-CA---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------CCTCGTGACTACG----CACCTTGTG--------------
---------------------------ACATTCTTCCCC-TGCCCG-AAAAG-ACTG-CC
CC-----AACTGTAACCTTCCACTACCTATCCC-AAACCTATAA-----------AACCA
GTTCCACTC-C--CACCGCCCTTCGCTGACTCCCTTTTCAGACTCAGCCCGCTCGCACCG
GAGTG-------A-ATAAACAGCCTTGTTGCTCACACTTAGCCTG--TCT-GGGTAGTCT
CTTC---TAGGCACGCGTA-----A--CA
>LTR7C_chr13_Sltr_fr_346__chr13_2690342026903850__
------------------------------------------------------------
--------------------------------AGCCATTGTGACCCCTGTGACTCACATG
TAC---------AGGC------------------CTCCTGGAGTCACAAAGCCTGGAGCA
GCA--G--GAACCACTCAAGAAGAA-AAACAGCT--------------------------
------------------AGTTCCTGCCTTAACTGAT-------------TAACCGACTT
TGCA--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CCACCATTCTGGTGTGTTCCTGCCCTGCCCCA
ACTAATCAATTGACC--------TC--GTGATATG-------------------------
GTGCATTG------------TGACCTCCCC-CA---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------CCTCGTGACTATG----CACCTTGTG--------------
---------------------------ACATTCTTCCCC-TGCCCG-AAAAA-ACTG-TC
CC----TAACTGTAACTTTCCACTATCTACCCC-AAACCCATAA-----------AACCA
GTTCCACTC-C--CACCACCCTTCGCTGACTCTCTTTTTGGACTCAGCCCGCTCACACCC
GAGTG-------A-ATAAACAGCCATGTTGCTCACACTTAGCCTG--TTC-AGGTTGTCT
CTTCACTTAGATGTATGTA-----A--C-
>LTR7C_chr5_Sltr_fr_1114__chr5_126702901126703329__
------------------------------------------------------------
--------------------------------AGCCATTGTGACCTCTGTGACCCACACA
TAC---------AGGC------------------CTCCTGGAGTCACAAAGCCTGGAGCA
ACA--GGAGAACCACTAAAGAAGAA-AAACAGCT--------------------------
------------------AGTTACTGCCTTAACTGAT-------------TAACCGACCT
TGCA--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------C--CCATTGTGATATGTTCCCGCCCTACCCTA
GCTAATCGATCGACC--------TT--GTGATATC-------------------------
ATGCCTTG------------TGACCTCCCC-CA---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------CCTCGTGACTATG----CACCTTTTG--------------
---------------------------ACATTCTTCCCC-TGCCCC-AAAAA-ACTG-CC
CC----TAACTGTAACTTTCCACTACCTACCAC-AAACCTATAA-----------AACCA
GTTCCACTC-C--CACCACCCTTCGCTGACTCTCTTTTTGGACACAGCCTGCTCACACCC
AAGTG-------A-ATAAACAGCCTTGTTGCTCACACTTAGTCTG--TTC-AGGGTGTCT
CTTCACTTAGATGCGT-------------
>LTR7C_chr2_Sltr_fr_723__chr2_227759484227759925_+_
--------------ACCACAG---------------------------------------
-----------------------------TAGAGCCATTGTGACCCCTGTGACCCACACG
TAC---------AGGC------------------TTCCTGGAGTCACAAAGCCTGGATCA
ATA--GCAGAACCACTAAAGAAGGA-AAACAGCT--------------------------
------------------ACTTCCTGCCTTAACTGA--------------TAACCAACCT
TGCA--------------------------------------------------------
----------------------------------------------------------AA
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CCACCATTGTGTTATGTTCCCGCCCTACCCTA
ACTAATCAATCAACC--------TT--GTGATATT-------------------------
GTGCCTTG------------TGACGTCCCC-CA---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------CCTCATGACTATG----CACCTTGTG--------------
---------------------------ACATTCTTCCCC-TTCCCG-AAAAA-A----CT
CC----TAACTGTAACTTTCCACTACTTAACCC-TTACCTGTAA-----------AACTA
ACTCCAATC-C--CACCACCCTCCGCTGCTTCTCTTTCTGGACTCAGCCTGCTCGCACCC
GAGTG-------A-ATAGACAGCCTTGTTGCTCACACTTAGCCTG--TTC-AGGGTGTCT
CTTCAATTAGACGCACG------------
>LTR7C_chr8_Sltr_fr_1391__chr8_1592593215926346_+_
------------------------------------------------------------
---------------------------------GCCATTGTGACCCCTGTGGCCCATACG
TAC---------AGGC------------------CTCCTGGAGTCACAAAGCCTGGAGCA
ACA--GGAAAACCACTAAAGAAGGA-AAACAGCT--------------------------
------------------AGTTCCTGCCTTAACTGAT-------------TAGCCGACCT
TCCA--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CCACCATTGTGATATGTTCCTGCCCTACCCAA
AGTAATCCATTGACC--------TT--GTGATACT-------------------------
GTGCCTTG------------TGACCTCCCC-CA---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------CCTTGTGACTATG----CACCTTGTG--------------
---------------------------ACATTATTCCCC-TGCTGG-AAAAA-ACGG-CC
CC----TAACTGTAACTTTCCATTGTTTACCCC-TTACCTATGA-----------AACTA
ACTCCAATC-C--CACCACCCTCCGCTGACTCTCTTTTCGGACTCAGCCCGCTCGTACCT
GAGTG-------A-ATAAACAGCCTTGTTGCTCACACTTAGCCTG--TTC-AGGGTGTCT
CTTCA------------------------
>LTR7C_chr2_Sltr_fr_776__chr2_9576661395767033__
------------------------------------------------------------
--------------------------------AGCCATTATGACCCCTGTGACCCACACG
TAC---------AGGC------------------CTCCTGGAGTCACAAAGCCTGGAGCA
CTA--GGAGAACCACTAAAGAAGAA-AAACAGCT--------------------------
------------------AGTTCCTGCCTTAACTGAT-------------GAACTGACCT
TGCA--------------------------------------------------------
----------------------------------------------------------GC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------GCACCATTGTGATATGTTCCTGCC-----CCA
ACTAATCCATCCACC--------TT--GTGATATT-------------------------
GTGCCTTG------------TGACCTCCCC-CA---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------CCTCGTGACTATG----CACCTTGTG--------------
---------------------------AAATTCTTCCCC-TGCCCG-AAAAA-ACTG-CC
CC----TAACTGTAACTTTCCACTACCTACTCC-AAGCCTATAA-----------AACTA
ACTCCACTC-C--CACAACCCTCCACTGACTTTCTTTTCGGACTCAGCCCACTTGCATCT
CAGTG-------G-ATAAACAGCC-TGTTGCTCACACTTAGCCTG--TTC-AGGGCGTCT
CTTCAATCAGACACGC-------------
>LTR7C_chr2_Sltr_fr_777__chr2_9605754896057944_+_
------------------------------------------------------------
---------------------------------GCCATTATGACCCCTGTGACCCACACG
TAC---------AGGC------------------CTCCTGGAGTCACAAAGCCTGGAGCA
CTA--GGAGAACCACTAAAGAAGAA-AAACAGCT--------------------------
------------------AGTTCCTGCCTTAACTGAT-------------GAACTGACCT
TGCA--------------------------------------------------------
----------------------------------------------------------GC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------GCACCATTGTGATATGTTCCTGCC-----CCA
ACTAATCCATCCACC--------TT--GTGATGTT-------------------------
GTGCCTTG------------TGACCTCCCC-CA---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------CCTCGTGACTATG----CACCTTGTG--------------
---------------------------AAATTCTTCCCC-TGCCCG-AAAAA-ACTG-CC
CC----TAACTGTAGCTTTCCACTACCTACTCC-AAGCCTATAA-----------AACTA
ACTCCACTC-C--CACAACCCTCCACTGACTTTCTTTTCGGACTCAGCCCACTTGCATCT
GAGTG-------G-ATAAACAGCC-TGTTGCTCACACTTAGCCTG--TTC-AGG------
-----------------------------
>LTR7C_chr2_Sltr_fr_778__chr2_9761363797614033_+_
------------------------------------------------------------
---------------------------------GCCATTGTGACCCCTGTGACCCACACG
TAC---------AGGC------------------CTCCTGGAGTCACAAAGCCTGGAGCA
CTA--GGAGAACCACTAAAGAAGAA-AAACAGCT--------------------------
------------------AGTTCCTGCCTTAACTGAT-------------GAACTGACCT
TGCA--------------------------------------------------------
----------------------------------------------------------GC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------GCACCATTGTGATATGTTCCTGCC-----CCA
ACTAATCCATCCACC--------TT--GTGATGTT-------------------------
GTGCCTTG------------TGACCTCCCC-CA---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------CCTCGTGACTATG----CACCTTGTG--------------
---------------------------ACATTCTTCCCC-TGCCCG-AAAAA-ACTG-CC
CC----TAACTGTAACTTTCCACTACCTACTCC-AAGCCTATAA-----------AACTA
ACTCCACTC-C--CACAACCCTCCACTGACTTTCTTTTCGGACTCAGCCCACTTGCATCT
GAGTG-------G-ATAAACAGCC-TGTTGCTCACACTTAGCCTG--TTC-AGG------
-----------------------------
>LTR7C_chr19_Sltr_fr_555__chr19_1003353910033958__
--------------GCCAAGG---------------------------------------
-----------------------------TCAAGCCATTGTGACCCCTGTGAGCCACATG
TAC---------AG-C------------------CTCCTGGGGTCACAAAGGCTGGAGCA
ACA--GGAGAACCACCAA------A-AAACAGCT--------------------------
------------------AGTTCCTGCCTTAACTTAT-------------TAACCGACCT
TGGA--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CCACCACTGTGATATGTTCCTGCCCTACCCTA
ACTAATCAATTGACG--------TT--GTGA-----------------------------
-----------------------CCTCCCC-CA---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------CCTTGTGGCTATA----AACCTTGTG--------------
---------------------------ACATTCTTCCCC-TGCCCG-AAAAA-ACTG-CC
CC----TAACTGTAACTTTCCACTACCTACCCC-AAACCTATAA-----------AACCA
GTTCCACTC-C--AATCACCCTTCACTGACTCTTTTTTCGGACTCAGCCCGCTTGCATCC
GAGTG-------A-ATAAACAGTCTTGTTGCTCACACTTAGCCTG--TTC-AGGGTGCCT
CTTCAATTAGACGCGC-------------
>LTR7C_chr17_Sltr_fr_504__chr17_52398735240530_+_
------------------------------------------------------------
---------------------------------GCCATTGTGACCCCTGTGACCCACACG
TAC---------AGGC------------------CTCCTGGAGTCACAAAGCCTGGAGCA
ACA--GGAGAACCACTAAAGAAGAC-GAACAGCT--------------------------
------------------AGTTCCTGCCTTAA-TGAT-------------TAACCGACCT
TGCA--------------------------------------------------------
----------------------------------------------------------AC
AGT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CCACC-TTGTGATATGTTCCTGCCCT------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-----------------------------
>LTR7C_chr17_Sltr_fr_509__chr17_52405005241180_+_
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CCACC-TTGTGATATGTTCCTTCCCT------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-----------------------------
>LTR7C_chr17_Sltr_fr_514__chr17_52409145241581_+_
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CCACC-TTGTGATATGTTCCTGCCCTTCCCCA
ACTAATCCATCCACC--------TT--GTGATATC-------------------------
GTGCCTTA------------TGACTTCCCC-CA---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------CCTTGTGACTATG----CACCTTGTA--------------
---------------------------ACATTCTTCCCC-TGCCCA-AAAAA-ACTG-CC
CC----TAACTGTAACTTTCCACTACCTACCCC-AAACCTATAG-----------AACCA
GTTCCACTC-C--CACCACCCTTCGCTGACTCCTTTCTCTGACTCAGCCCACTTGCACCC
AAGTG-------A-ATAAACAGCCTTGTTGCTC-CACTAAGCCTG--CTC-AGGTGGTCT
CTTA---TACGGAGGCGTA-----A--CA
>LTR7d1_chr5_116619010_116619408_h3k27ac_EncodeTxn_SOLO_C_7down___chr5_116619010116619408___1398
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGTACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCCACCTTAACTGAT-----------------------
---GACATTGCACCACAAAAGACATGAAAATAGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTCTAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACACC-TGCCCGCCAGAGAACAACCC
CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG-
GTCCCACCC-C-T-ATCTCCCTT-------------TTCAGACTCAGCCAGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGATGTGCGTG----------
>LTR7d2_chr10_25716421_25722926_2736_ZNF534_ZNF90_KAP1_EncodeTxn_NANOG_7down____chr10_2571642125716832____1411
-ATCAGACCTCTGAGCCTAAG-----------------------CTAAGCCATCATATCC
TTTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAATGAAAATGGCCCGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCAACCC-TGCCCGCCAGAGAACAACCC
CCT-TTTGACTGTAATTTTCCTTTACGTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCACTGACTGTCTTTTCAGACTCAGCCTGCCTGCACCC
AGGTGA-----AA--TAAACAGCATTTTTGCTCACACATAGCCTG--TTT--GGTGGTCT
CTTCACATGGATGCGCATGA---------
>LTR7d2_chr7_20546709_20551693_2427_1_EncodeTxn_7down____chr7_2054670920547109____1399
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACA
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAGATGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GAGAAATTCCTTCT-------------------
---------CCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTGGTG--------------
---------------------------AC-CCCCACTCC-TGCCCACTAGAGAACAACCC
CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG-
GCCCCACGC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC
AAGTGA-----A----AAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACGCGAGTGA---------
>LTR7d2_chr2_194130702_194136554_3182_KAP1_EncodeRepressed_GRO4of7_C_7down___chr2_194136145194136554___1409
TATCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACA
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCGCAAAAGAAATGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GCGAAATTCCTTCTCCTGC--------------
----CTCACCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCACCAAAGAAAAATCC
CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTTGCTGAC--TCTTTTCAGACTCAGCCCCCCTGCACCC
AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAATCCTG--TTT--GGTGGTCT
CTTCACACAGACGCGCAT-A---------
>LTR7d2_chrX_126863047_126868992_4503_ZNF534_KAP1_EncodeTxn_7down____chrX_126863047126863509____1411
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATGCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAATGAAAATGGTCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCTTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCACTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CATCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCACCAGAAAACAACCA
CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG-
GCCCCACGC-C-T-ATCTCCCTTCGCTGACTTTCTTTTCAGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCTTACTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGATGCGCATGA---------
>LTR7d2_chr8_85062831_85069153_3229_ZNF534_KAP1_weakenh_7down____chr8_8506283185063238____1407
-GTCAGGCCTCTGAGCTCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TGCACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCGTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAATGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CAACTTGTG--------------
---------------------------AC-CCCCACTCC-TTCCCACCAGAG---AACCC
CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCACTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTTGCACA-ACGCACATGA---------
>LTR7d2_chr9_100140182100146522_3410_ZNF534_k4me3_TSS_NANOG_wanghigh_GRO2of7__chr9_100146116100146522___1406
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCT
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCT--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAATGAAAATGGCCTGTTCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-T----GCCAGAGAACAACCC
CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTACAA-----------AACG-
GCCCCACCC-C---ATCTTCCTTCACTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGCTGCTCACACAAAGCCTG--CTT--GTTGGTCT
CTTTACACAGATGCGCATG----------
>LTR7d2_chr5_167297631_167303678_3096_ZNF534_TSSflanking_GRO3of7_C_7down___chr5_167303271167303678___1407
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCAGG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCT--------------------------
------------------GGTTCCTGCCTTAAATGAT-----------------------
---GACATTCCACCACAAAAGAAATGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-AGCCCGCCAGAGAACAGCCC
CCC-TTTGACTGTAATTTTCCTTTACCTAACCA-AATCTTATAA-----------AACG-
GCCTCACCC-C-T-CCCT----TTGCTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC
AGGCGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACGCCCATG----------
>LTR7d1_chr12_13259639_13265519_4739_ZNF534_KAP1_EncodeRepressed_NANOG_GRO3of7_C_7down___chr12_1326512013265519___1399
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCATG
TACACACCCAGA------------------------------------------------
-----------------------------TGGCT--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAACGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCAAT-C-TGCCCACCAGAGAACAACCC
CCC-TTT----------TTCCTTTACCTACCCA-AATTCTATAA-----------AATG-
GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTTGGACTCAGCCCACCTGCACCC
AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTTACACAGACGCGCATG----------
>LTR7d1_chr19_54321247_54321646_EncodeRepressed_SOLO_C_7down___chr19_5432124754321646___1399
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACA
TACACATCCAGA------------------------------------------------
-----------------------------TGGCT--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCTTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCTCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------G---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACA-C-TGCCCACCAGAGAACAACCC
CTC-TTT----------TTCCTTTACCTACCCA-AATCCTATAA-----------AATG-
GCCCCACCC-C-T-ATCTCCCTTCGATGACTCTCTTTTTGGACTCAGCCCACCTGCACCC
AGGTGA---------TTAAAAGCTTTACTGCTCACACAAAGCCTG--TTT--AGTGGTCT
CTTCACACGGAAGCGCATG----------
>LTR7d2_chr4_132118178132123891_4549_ZNF534_EncodeTxn_GRO2of7__chr4_132118178132118590____1407
-GTCAGGCCTCTGAGGCCAAG-----------------------CTAAGCC---ATATCC
CCTGTGAC---------------------------------------------CTGCATG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCT--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCTACCACAGAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCTCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACT-C-TGCCCACCAGAGAACACCCC
ACC-TTTGACTGCAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AATG-
GCCCCATCC-C-T-ATCTCCCTTCACTGACTCTCTTTTTTGACTCAGCCCACCTGCACCC
AGGTGA---------TAAACAGTTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGCGCATGA---------
>LTR7d1_chr19_55006829_55012423_3186_ZNF534_k4me3_weakenh_NANOG_GRO1of7_C_7down___chr19_5501201655012423___1397
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCATA------------------------------------------------
-----------------------------TGGCT--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTAC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------A---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACT-C-TGCCCGCCAGAGAACAACCC
CGC-TTT----------TTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C---ATCCCCCTTCGCTGACTCTCTTGTCGGACTCAGCCCACCTGCACCC
AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGCACATG----------
>LTR7d1_chr6_164338769_164344779_3315_ZNF534_KAP1_k27ac_enh_NANOG_44108_SMAD11_GRO4of7_C_7down___chr6_164344371164344779___1397
TGTCAGGCCTCTGAGCCCAAA-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACT
TACACATCCAGA------------------------------------------------
-----------------------------TGGCT--------------------------
------------------GGATCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATC---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCCTGTG--------------
---------------------------AC-CCCCACT-C-TGCCCACCAGAGAACAAACC
CCC-TTT----------TTCCTTTACCTACTCA-AATCCTATAA-----------AACG-
GCCCCACCC-C---ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA---------TTAAAAGCTTTATTGCTCACATAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGATGCACATG----------
>LTR7d1_chr14_9597303195978860_3275_ZNF534_KAP1_EncodeTxn_GRO2of7__chr14_9597303195973430____1398
-GTCAGGACTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCCGTGAC---------------------------------------------CTGCACA
TACGCATCCAGA------------------------------------------------
-----------------------------TGGCT--------------------------
------------------GGTTTCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATACTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACT-C-TGCCCGCCAGAGAACAACTC
CCC-T-T----------TTCCTTTACCTACCCA-AATCCTATAA-----------AATG-
GCACCACCC-C-T-ATCTCCCCTTGCTGACTCTCTTTTCGGACTCAGCCCACGTGCACCC
AGGTGA---------TTAAAAGGTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGCACATGA---------
>LTR7d1_chr16_7814737_7820397_4211_1_EncodeRepressed_GRO3of7_7down____chr16_78147377815094____1357
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCAATCATATCC
CCTGTGGC---------------------------------------------CTGCATG
TACACATCCAGC------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCATTAACTGAT-----------------------
------------------------------------------------------------
---------------------------------------------------------GAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACT-C-TGCCTGCCAGAGAACAACCC
CCC-TTTGACTGTAATTTTCCTTTATGTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACACGCATGA---------
>LTR7d1_chr12_8812977_8813333_h3k27ac_EncodeRepressed_SOLO_7down____chr12_88129778813333____1356
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCT
CCTGTGGC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
------------------------------------------------------------
---------------------------------------------------------GAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACT-C-TGCCCGCCAGAGAACAACCC
CTC-TTTGACTGTAATTTTCCTTTACCTACCCG-AATCCTATAA-----------AACG-
ACCCCACCC-C---ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA---------TTAAAAGCTTTATTGCTTACACAAATCCCG--TTT--GGTGGTCT
CTTCACACGGACGCACATGA---------
>LTR7d1_chr10_116480675_116486518_4892_ZNF534_ZNF90_KAP1_EncodeTxn_7down____chr10_116480675116481083____1408
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCT--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGCCCTGTTCC-------------------
------------TG------------------CT----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGTTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----AACCCTGTG--------------
---------------------------AC-CCCCACT-C-TACCCGCTAGAGAACAACCC
CCC-TTTGACTGTAATTTTCTTTCACCTACCCA-AATCCTATAA-----------AACG-
GTCCCACCC-C-T-ATCTCCCCTCACTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GATGGTCT
CTTTACACGGACACGCATGA---------
>LTR7d1_chr12_8804879_8810576_3190_ZNF534_k4me3_weakenh_NANOG_GRO1of7_7down____chr12_88048798805281____1402
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCTATCATATCC
CCTGTGAC---------------------------------------------CT-----
-ACACATCCAGG------------------------------------------------
-----------------------------TGGCT--------------------------
------------------TGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATAAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--ATGAAATTCCTTCTCCTGG--------------
----CTCACCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCATT-A-TGCCCGCCAGAGAACAACTC
CCC-TTTGACAGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGTGCATGA---------
>LTR7d2_chr21_1689221016898240_4614_ZNF534_KAP1_EncodeTxn_GRO2of7__chr21_1689221016892611____1401
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCATG
TACACATCCAGG------------------------------------------------
-----------------------------TGGCT--------------------------
------------------GGTTCCTGCCTTAACTGAG-----------------------
---GACATTCCACCACCAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAACTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACCTTGTG--------------
---------------------------AC-ACCCAGT-C-TGCCCACCAGAGAACAACTC
CCC-TT----------TTTCCTTTACCTACCCA-AATCCTATAA-----------AAGG-
GCCCCACCC-C-T-ATCTTCCTTTGCTGACTCTCTTTTCAGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGATGGGCATGA---------
>LTR7d2_chr9_115174652_115180335_3138_ZNF534_weakenh_NANOG_GRO3of7_C_7down___chr9_115179932115180335___1393
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
ACTGTGAC---------------------------------------------TTTCATG
TACACATCCAGA------------------------------------------------
-----------------------------TGGTT--------------------------
------------------GGTTCCTGCCTTAAATGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTGGA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TATCTTGTG--------------
---------------------------AC-CCCCACT-C-TGGCCACCAGAGAACAACCC
CGC-TT----------TTTCCTTTATTTACCCA-AATCCTATAA-----------AACG-
TCCCCACCC-T-T-ATCTCCCTTGGCTGACCCTCTTTTCGGACTCAGCCCAGCTGCACCC
AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTC-CATGGATG----------------
>LTR7d2_chr13_63213193_63219132_3448_ZNF534_KAP1_EncodeTxn_GRO3of7_7down____chr13_6321319363213548____1355
-GTCAGGCCTCTGAGCCCAAA-----------------------CTAAGCCATCATATCT
CCTGTGAC---------------------------------------------CTGCATG
TACATATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAA----------------------------
------------------------------------------------------------
----------------------------------------------------CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAACTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGTTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACT-C-TGCCCACCAGAGAACAACCC
CCC-TTTGACTGTAATTTTCCTTCACCTACCCA-AATCCTAT---------------TG-
GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCTTCGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCCCACGGACGTGCATGA---------
>LTR7d2_chr8_888877_889287_enh_SOLO_NANOG_C_7down___chr8_888877889287___1410
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCACA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTTCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CTCCAGT-C-TGCCCGCCAGAGAACAACCC
CCC-TTTGACTGTAATTTTCCTTTATCCACCCA-AATCCTATAA-----------AATG-
GCCCCACCC-C-T-ATCTCCCTTCAATGACTCTCTTTTCGGACTCAGCCCACCTGCATCC
AGATGA-----AA--TAAACAGCTTTATTGCTCACACAAAACCTG--TTT--GGTGGTCT
CTTCACACGGACAAGCATG----------
>LTR7d2_chr14_46012433_46018103_4355_ZNF534_EncodeRepressed_NANOG_C_7down___chr14_4601769746018103___1406
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACA
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTCAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACT-C-TGCTCGCCAGAGAACAACCC
CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AATG-
GCCCCACCC-C-T-ATCTCCCTTCGCT----CTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACACACATG----------
>LTR7d2_chr6_144869847_144870256_h3k27ac_EncodeRepressed_SOLO_NANOG_C_7down___chr6_144869847144870256___1409
TGTCTGGCCTCTGAGCCCAAG-----------------------ATAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACA
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCTGCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACCTTGTG--------------
---------------------------AC-CCCCACT-C-TGCCCGCCAGAGAACAACCC
CC--TTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AATG-
GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAACCCACCTGCCCCC
AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACACGCATG----------
>LTR7d2_chr6_164652142_164658014_3526_ZNF534_EncodeTxn_GRO3of7_C_7down___chr6_164657654164658014___1359
TGTCAGGCCTCCGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCATG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------G-----------------------------------------
-------------------------------------TTCC-------------------
------------TG------------------CC----------TTAA----TTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAT---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACCTTGTG--------------
---------------------------AC-CCCCACT-C-TGCCCGCCAGAGAACAAACC
CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AATG-
GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTTGGACTCAGCCCACCTGCCCCC
AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACAGGGACACGCATG----------
>LTR7d2_chr3_70434672_70440419_3011_ZNF534_ZNF90_EncodeRepressed_GRO4of7_C_7down___chr3_7044001070440419___1406
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACA
TACACATCCATA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--GAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACT-C-TGCCCGCCAGAGAACAACCC
CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AATG-
GCCCCATCC-C-T-ATCTCCCTTTGCTGACTCTATTTTTGGACTCAGCGCACCTGCACCC
AGGTGA-----AA--TAAACAGCTTTATTGCTAACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGT---------------
>LTR7d2_chr12_62729867_62730257_enh_SOLO_FOXP1_NANOG_7down____chr12_6272986762730257____1390
--------------------G-----------------------ATAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTTCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATG---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCCTGTG--------------
---------------------------AC-CCCCACT-C-TGCCCGCCAGAGAACAACCC
CCC-TTTGACTGTAATTTTCCTTTACCTACCCG-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACCTGCATCC
AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGAGGCACATG----------
>LTR7d2_chr5_124303758124309476_3253_ZNF534_KAP1_EncodeTxn_GRO2of7__chr5_124303758124304213____1404
---CAGGCCTCTGAGCTTAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GGCATTCCACCACAAAAGAAATGAAAATGGCCTGTCCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCAGCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACC-C-TGCCCGACAGAGAACAACCC
CCC-TTTGACTGTAATTTTCCTTTACCCA-----AATCTTATAA-----------AGCG-
GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACCCACACCC
AGGTGA------T--TAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGCACATGA---------
>LTR7d1_chr11_36479493653636_4719_ZNF534_ZNF90_KAP1_EncodeTxn_NANOG_GRO2of7__chr11_36479493648306____1357
-GTCAGGCCTCTGAGCCGAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACA
AACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAA----------------------------
------------------------------------------------------------
----------------------------------------------------CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACT-C-TGCCTGCCAGAGAACAACCC
CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T---ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGTCCACCTGCACCC
AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTGT
CTTCACACGGACGCGCATGA---------
>LTR7d2_chr2_203961942_203967634_4721_ZNF534_ZNF90_KAP1_EncodeTxn_GRO4of7_C_7down___chr2_203967278203967634___1356
TGTCAGGCCTCTGAGCCTAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACA
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------AATTCCTGCCTTAA----------------------------
------------------------------------------------------------
----------------------------------------------------CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAGTTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACT-C-TGCCTGCCAGAGAACAACCC
CCC-TTTGACTGTAATTTTCCTTTACATACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C---ATCTCCCTTCGCTGACTCT--TTTCGGACTCAACCCACCTGCACCC
AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACGCACATG----------
>LTR7d2_chr10_80910389_80910748_weakenh_SOLO_NANOG_C_7down___chr10_8091038980910748___1358
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCGTCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGG------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAA----------------------------
------------------------------------------------------------
----------------------------------------------------CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCTCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACT-C-TGCCTGCCAGAGAACAACCC
CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACA-
GCTCCACCC-C---ATCTCCCTTCGCTGACTCTCTTTTCCGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCTTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATG----------
>LTR7d1_chr4_167876312167882021_2857_ZNF534_KAP1_weakenh_NANOG_OCT4_SMAD11_SOX2_TCF4_GRO2of7__chr4_167876312167876709____1397
-GTCAGGCCTCTGAGCCTAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCAGG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAAT-GCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ACT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAA-TTCCTTCTGCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACCTTGTG--------------
---------------------------AC-CCCCATTCC-TGCCCACCAGAGAACAACCC
CCC-TT----------TTTCCTTTACCTACCCA-AATCCTATAA-----------AATG-
GCCCCACCC-C-T-ATCTCCCTTCATTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGT-----TA--AAAGA---TTTATTGCTCACACAAAGCCCG--TTT--GGCAGTCT
CTTCACACGGATGCACATGA---------
>LTR7d2_chr7_121563649_121569668_4421_ZNF534_ZNF90_KAP1_EncodeTxn_NANOG_GRO4of7_C_7down___chr7_121569270121569668___1397
TGTCAGGCCTCTGAGCCTAAG-----------------------CTAAGCCATCATATCA
CCTGTGAC---------------------------------------------CTGCACA
TACACATCCAGA------------------------------------------------
-----------------------------TGACC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTAAAATTCCTTCTGCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACCTTGTG--------------
---------------------------AC-CCCAACTCC-TGCCCGCCAGAGAACAACCC
CCC-TT----------TTTCCTTTACCTACCCA-AATCCTACAA-----------AATG-
GCCCCACCC-C---ATCTCCCTTCGCTGACTCTCTTTTTGGACTCAGCCCACCTGCACCC
AGGTGT-----TA--AAAGC---TTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGATACGCATG----------
>LTR7d2_chr19_5262779552633395_4482_KAP1_EncodeTxn_GRO2of7__chr19_5262779552628192____1392
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
C--GTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------AGTTCCTTCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ACT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--TTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACGTTGTG--------------
---------------------------AC-ACCCACTCC-TGCCCACCAGAGAACAACCC
CCC-TT----------TTTCCTTTACCTACCCA-AATCCTATAA-----------AATG-
GCCCAACCC-C-T-ATCTCCCTTT----ACTCTCTTTTTGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAAG---TTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACACGCATGA---------
>LTR7d2_chr7_147166558_147166914_EncodeRepressed_SOLO_C_7down___chr7_147166558147166914___1356
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCATG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------------------------------------------------
------------------------------------GTTCC-------------------
------------TG------------------TC----------TTAA----TTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTACTTCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACCTTGTG--------------
---------------------------AC-CCCCACTC--TGCCCACCAGAGAA--ACCC
CCC-TT----------TTTCCTTTACCTACCCA-AATCCTATAA-----------AATG-
GCCCCACCC-C---ATCTCCCTTCACTAACTCTCTTTTCAGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCACAAG----------
>LTR7d2_chr1_198034651_198040990_3140_ZNF534_KAP1_EncodeTxn_GRO4of7_7down____chr1_198034651198035056____1402
-GTCAGGCCTCTGAGCCCAAA-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------AGTTCCCGCCTCAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTATTCC-------------------
------------TG------------------CC----------TTAA----TTGATGAT
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACCTTGTG--------------
---------------------------AC-CC-CACTC--TGCCCTCCAGAGAACAACCC
CCC-TT----------ATTCCTTTACCTACCCA-AATCCTATAA-----------AATG-
GCCCCGCCC-C---ATCTGCCTTCACTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--T------TTTTATTGCTCACACAAAGCCTA--TTT--GGTGGTCT
CTTTACACAGATGCACATGA---------
>LTR7d2_chrX_138264358138270033_4392_1_EncodeTxn_NANOG_GRO2of7__chrX_138269633138270033___1400
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGTCATCATATCC
CCTGTGAC---------------------------------------------CTGCACA
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------AGTGCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTACTCCTGG--------------
----CTCAACCTGGCTCAA--AAGCTCCCTCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCTACCAGAGAACAACCC
CCC-TT----------CTTCCTTTACCTACCCA-AATCCTATAA-----------AATG-
GCCCCACCC-C---ATCTCCCTTCGCTGACTCTCTTTTCAGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGTTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGGCGCACATG----------
>LTR7d2_chr2_224296633224302363_4691_ZNF534_KAP1_EncodeTxn_chimeric_GRO2of7__chr2_224296633224297043____1410
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCT--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----AACATTGTG--------------
---------------------------AC-CTCCACTT--TGCCCGCCGGAGGACAACCC
CCC-TT----------TTTCCTTTACTTACCCA-AATCCTATAA-----------AATG-
GCCCCACCC-C-T-ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACACGCATGA---------
>LTR7d2_chrX_57336041_57336451_h3k27ac_weakenh_SOLO_NANOG_44108_7down____chrX_5733604157336451____1410
-GTCAGGCCTCCGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCAGG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCT--------------------------
------------------GGTTCCTACCTTAACTAAT-----------------------
---GACATTCCACCACAAAAGAAGGGAAAATAGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCGTTCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACCTTGAG--------------
---------------------------AC-CCCCATTC--TGCCCGCCAGAGAAGAACCC
CTC-TT----------TTTCCTTTACCTACTCA-AATCCTATAA-----------AATG-
GCCCCACCC-C-T-ATCTCCCTTCATTGACTCTCTTTTCAGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCTTTATTGCTCACAGAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATGA---------
>LTR7d2_chr2_7905140079057072_4373_ZNF534_KAP1_EncodeRepressed_GRO2of7__chr2_7905140079051798____1397
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATGTCC
CCTGTGAC---------------------------------------------CTGCACG
TTCACATCCAGA------------------------------------------------
-----------------------------TTTCC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------AC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTTTCCTGG--------------
----CTCATCTTGGCTCAA--AAGCTCTCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACCTTGTG--------------
---------------------------AC-CCCCAGTC--TGCCCGCCAGAGAACCCCCC
T----T----------TTTCCTTTACCTACCCA-AATCCTATAA-----------AATG-
GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGATGCACATGA---------
>LTR7d2_chr2_224225331_224230986_4575_ZNF534_EncodeRepressed_NANOG_7down____chr2_224225331224225728____1396
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTATGAC---------------------------------------------CTGCACG
TACACATCCAGG------------------------------------------------
-----------------------------TCGCT--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACCTTGTG--------------
---------------------------AC-CCCCACTC--TGCCCGCCAGAGAACAACCC
C----T----------TTTCCTTTACCTACCCA-AATCCTATAA-----------AATG-
GCTCCACCC-C---ATCTCCCTTCGCTGACTCTCTTTTCAGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCTCATGA---------
>LTR7d2_chr11_3398785_3399193_EncodeTxn_SOLO_NANOG_7down____chr11_33987853399193____1408
-GTCAGGCCTCTGAGCTCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AACCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACCTTGTG--------------
---------------------------AC-CCCCATTC--TGCCCGCCAGAGAACAACCC
CCC-TT----------TTTCCTTTACCTACCCA-AATCCTATAA-----------AATG-
GCCCTACCC-C-T-ATCTCCCTTCTCTGACTCTCTTTTC--ACTCAGCCTGCCTGCACCC
ATGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTAT
CTTCACACGGACGCGCATGA---------
>LTR7d2_chr8_10571081_10577329_4734_ZNF534_EncodeTxn_7down____chr8_1057108110571481____1400
-GCCAGGCCTCTGAGCCCAAG-----------------------CTAAACCATCATATCC
CCTGAGAC---------------------------------------------CTGCACG
TACACTTCCAGA------------------------------------------------
-----------------------------TGGCA--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TA------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TAACTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACA-CCC
CCC-TT----------TTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCTCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCAGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATGA---------
>LTR7d2_chr13_9764231897648209_4854_ZNF534_ZNF90_KAP1_EncodeTxn_GRO2of7__chr13_9764231897642715____1395
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCAT-----CC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----AAACTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAACCC
CCC-TT----------TTTCCTTTACCTACCCA-AATTCTATAA-----------AACA-
GCCCCACCC-C---ATCTCCCTTAGCTGACTCTCTTTTCAGACTCAGCCCACCTGCACTC
AAGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCACATGA---------
>LTR7d2_chr6_140257496_140263080_1905_ZNF534_ZNF90_KAP1_EncodeRepressed_NANOG_GRO4of7_C_7down___chr6_140262670140263080___1410
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCATG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---AACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCTCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACCTTGTG--------------
---------------------------AC-CCCCACT-C-TGCCTGCCAGAGAACAACCC
CCC-TT----------TTTCCTTTACCTACCCA-AATCCTGTAA-----------AACA-
GTCCCACCC-C-T-ATGTCCCTTTGCTGACTCTCTTTTCAGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGCACATG----------
>LTR7d2_chrX_33104306_33104707_EncodeTxn_SOLO_FOXP1_NANOG_SMAD11_7down____chrX_3310430633104707____1401
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAT---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TTGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAACCC
CCC-TT----------TTTCCTTTATCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C---ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCTTTATGGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGTATGA---------
>LTR7d2_chrX_86981884_86987487_3116_ZNF534_k27ac_EncodeRepressed_KLF4_NANOG_44108_SMAD11_TCF4_GRO3of7_7down____chrX_8698188486982284____1400
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAT---------------------------------------------CTGCACA
TACACATCCAGA------------------------------------------------
-----------------------------TGGGC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAAACC
CCC-TT----------TTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GTCCCACCG-C---ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACACGCATGA---------
>LTR7d2_chr8_63497054_63497454_EncodeRepressed_SOLO_NANOG_7down____chr8_6349705463497454____1400
-ATCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGGC---------------------------------------------CTGCATG
TACACATCTAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACCTTGTG--------------
---------------------------AT-CCCCACTCC-TGCCTGCCAGAGAACAACCC
CCC-TT----------TTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C---ATCTCTCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCATCC
AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGATGCGCATGA---------
>LTR7d2_chr14_48262396_48268282_3168_ZNF534_TSS_NANOG_SMAD11_SOX2_wanghigh_GRO1of7_C_7down___chr14_4826787248268282___1410
TGTCATGCCTCTGAGCCTAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TAGCC--------------------------
------------------CATTCCTGCCTTAAGTGAT-----------------------
---GACATTCCACCACAAAATAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTAATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGA--------------
----CTCATCCTGGCTTGA--AGGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACATTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGACAACAACCC
CGT-TT----------TTTCGTTTACCTACCCA-AATCTTATAA-----------AACA-
GCCCCACCC-C-T-ATCTCCCTTCACTGACTCTCTTTTCAGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATG----------
>LTR7d2_chr7_78577478_78577880_h3k27ac_weakenh_SOLO_NANOG_44108_SMAD11_SOX2_C_7down___chr7_7857747878577880___1400
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TCGCC--------------------------
------------------AGTTTCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAGAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAACCC
CCC-TT----------TTTCCTTTACCTACCCA-AATCCTATAA-----------AACA-
GCCCCACCC-C-T-ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGTGCATG----------
>LTR7d2_chr6_123582336_123588007_4656_ZNF534_k4me3_weakenh_NANOG_GRO4of7_C_7down___chr6_123587607123588007___1400
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TCGAC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---AACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAACCC
CCC-CT----------TTTGCTTTACCTACCCA-AATCCTATAA-----------AACA-
GCTCCACCC-C-T-ATCTCCCTTCACTGACTCTCTTTTTGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TT---GGTGGTCT
CTTCACACGGACGCACATG----------
>LTR7d2_chr4_138927836_138933543_4578_ZNF534_ZNF90_KAP1_EncodeRepressed_7down____chr4_138927836138928235____1397
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGACC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CT----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAAC----C
CCC-TT----------TTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AG--TAAACAGCTTTATTGCTCACACAAATCCTG--CTT--GGTGGTCT
TTTCACACAGACGTGCATGA---------
>LTR7d2_chr3_187466299_187472000_4418_ZNF534_KAP1_EncodeRepressed_C_7down___chr3_187471594187472000___1405
TGTCAGCCCTCTGAGCCCAAG-----------------------CTAAGCC---ATATCC
CCTGTGAC---------------------------------------------CTGCATG
TACACATCCAGA------------------------------------------------
-----------------------------TGGGC--------------------------
------------------AGTTCCTGCCTTAACTGCT-----------------------
---GACATTCTACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ACT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACCTTGTG--------------
---------------------------AC-CCCCACT-C-TGCCCGCCAGAGAACAACCC
CCC-TT----------TTTCCTTTACCTACCCA-AATCTTATAA-----------AATG-
GCCCCACCC-C-T-GTCTCCCTTCACTGAC--TCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCTTTACTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACGTGCATG----------
>LTR7d2_chr4_23797848_23798248_weakenh_SOLO_NANOG_7down____chr4_2379784823798248____1400
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
TCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACAACGAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCAAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GGG----TACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAACCC
CC--CT----------TTTCCTTTACCTACCCA-AATCTTATAC-----------AACG-
GCCCCACCC-C---ATCTCCCTTCTCTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCTTTACTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACACGCATGA---------
>LTR7d2_chr2_156720084_156725844_4499_ZNF534_KAP1_EncodeTxn_NANOG_GRO3of7_C_7down___chr2_156725433156725844___1410
TGTCAGTCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCATG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTT--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAACCC
CC--TT----------TTTCCTTTACCTACCCA-AATCTTATAA-----------AACG-
GCCCCACCC-C---ATCTCCCTTCGCTGACTCTCTTTTCAGACTCAGCCCGCCTGCGCCC
AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATG----------
>LTR7d2_chr3_192071109_192076858_4453_1_EncodeTxn_NANOG_GRO4of7_C_7down___chr3_192076445192076858___1410
TGTCAGGCCTCTGAGCCCAAG-----------------------TTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CCGCATG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GCC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAACCC
CC--TT----------TTTCCTTTACCTACCCA-AATCTTATAA-----------AACG-
GCCCCACCC-C---ATCTCCCTTGGCTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCT
AGGTGA-----AA--TAAACAGCTTTATTGCTCACGCAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGCGCATG----------
>LTR7d2_chr11_70213950_70214361_weakenh_SOLO_NANOG_SMAD11_C_7down___chr11_7021395070214361___1411
TGTCAGGCCTCTAAGCCCCAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAACCC
CCC-TT----------TTTCCTTTACCTACCCA-AATCTTATAA-----------AAAG-
GCCCCACCC-T---ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCTCGCCTGCACCC
AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--AGTGGTCT
CTTTACATGGACGCAAGTG----------
>LTR7d2_chr9_98273823_98274231_h3k27ac_EncodeRepressed_SOLO_NANOG_C_7down___chr9_9827382398274231___1408
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTATTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACCTTGTG--------------
---------------------------AC-CTCCACTCC-TGCCCGCCAGAGTACAACCC
CCC-TT----------TTTACTTTACCTACCCA-AATATTATAA-----------AACG-
GCCCCACCC-C---ATCTCCCTGCACTGA--CTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGAAGCGAGTG----------
>LTR7d2_chr3_145710495_145716095_3035_ZNF534_KAP1_EncodeTxn_GRO3of7_7down____chr3_145710495145710846____1349
-GTCGGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACA
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------TGTTCCTGCCT-------------------------------
------------------------------------------------------------
---------------------------------------------TAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--ATGAAATTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCCTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACACGCC
CAC-TT----------TTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C---ATCTCCCTTCGCTGACATTCTTTTTGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTC--GGTGGTCT
GTTCACACAGACGCACATGA---------
>LTR7d2_chr1_38425114_38430779_4320_transcribed_ZNF534_k4me3_TSS_NANOG_44108_wanghigh_GRO1of7_7down____chr1_3842511438425524____1410
-GTCAGGTCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACT-C-TGCCCACCAGAGAACAACCC
CCC-TT----------TTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCACTGACTCTGTTTTTGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTC--TTT--GGTGGTCT
CTTCACGCGGACGCACATGA---------
>LTR7d2_chr18_42737046_42742345_2894_1_k27ac_EncodeRepressed_GRO1of7_7down____chr18_4273704642737438____1391
-GTCAGGCCTCTGAGCCCAAG-----------------------CGAAGCTGTCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGG----------------------------
--------------------------CCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ACT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAT---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAACCC
CCC-TT----------TTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTCAGACTCAGCCTGCCTGCAACC
AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTC--TTT--GGTGGTCT
CTTCACACAGACGCGAGTGA---------
>LTR7d2_chr2_173304187_173304589_EncodeTxn_SOLO_NANOG_C_7down___chr2_173304187173304589___1401
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCTTCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCT--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCTTTTTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAACCC
CCC-TT----------TTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCAACC-C-T-ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC
AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCACATG----------
>LTR7d1_chr8_3237992_3243711_3347_1_k4me3_EncodeRepressed_GRO3of7_C_7down___chr8_32433213243711___1378
TGTCAGGCCTGTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCATG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGCAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAACTCCCCTGC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CATCTTGTG--------------
---------------------------AC-CCCCACACC-TGCCCCCCAGAAAACAACCC
CCT-TTT----------TTCCTTTACCTACTCA-AA------------------------
--------------GTCTCCCTTCAGTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----T---AAACA-GCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTGT
CTTCACATGGACGCGAGTG----------
>LTR7d1_chr13_104207593_104213824_2340_ZNF534_KAP1_EncodeRepressed_NANOG_GRO3of7_C_7down___chr13_104213422104213824___1392
TGTCAGGCTTCTGAGTCCAAG-----------------------CTAAGCCATCCTATCC
CCTGTGAC---------------------------------------------CTGCATG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------TC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CC---CACC-TTCCCGCCAGAGAACAACCC
CCT-TTT----------TTCCTTTACCTACCCA-AATCCTATAA-----------AATG-
GCCCCACCC-A-T-ATCTCCCTTCA----CTCTCTTTTCGGACTCGGCCTACCTGCACCC
AGGTGA-----T---TAAAA-GCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACAGGGACGCGAGTG----------
>LTR7d1_chr10_25902389_25902799_EncodeTxn_SOLO_C_7down___chr10_2590238925902799___1409
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACA
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAACGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CATCTTGTG--------------
---------------------------AC-CCCTACTCC-TGCCCGCCAGAGAACAACCC
CCC-TTT----------TTCCTTTACCTACCCA-AATCTTATAA-----------AATG-
GACCCACCC-C-T-ATCTCCCTTCGTTGACTCTCTTTTCGGACTCACCCCACCCACACCC
AGGTGA-----T---TAAAA-GCTTTATTGCTCACACAAAGCCTG--TTT--AGTGGTCT
CTTCACATGGACGCGAGTG----------
>LTR7d1_chr3_31506596_31507006_h3k27ac_weakenh_SOLO_C_7down___chr3_3150659631507006___1410
TATCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCATG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------CATTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCGCAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TAAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCATTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------A---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAACCC
CCC-TTT----------TTCCTTTACCTACCCA-AATTTTATAA-----------AACA-
GCCCCACCC-T-T-ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----T---TAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGTTCT
CTTCACACGGACGCGAGTG----------
>LTR7d1_chr12_30056081_30062516_3142_ZNF534_EncodeTxn_GRO3of7_7down____chr12_3005608130056491____1410
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACA
TACGCATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGGAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTAG--------------
----CTCATCCTGGCTCAG--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACCTTGTG--------------
---------------------------AC-CCCCACTCC-TTCCCGCCAGAGAACAACCC
CCT-TTT----------TTCCTTTACCTACCCA-AATCTTATAA-----------AACC-
GCCCCATCC-C-T-ATCTCCCTTCACTGACTCTCTTTTTGGACTCAGCCCGCCTGCCCCC
AGGTGA-----T---TAAAAAGCTTTATTCCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGAACACGAGTGA---------
>LTR7d1_chr5_45112438_45112846_h3k27ac_EncodeRepressed_SOLO_C_7down___chr5_4511243845112846___1407
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
TCTGTGAC---------------------------------------------CTGCACG
TACACATACAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAT
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATA--------TT--GTGAATTTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCC-ACTCC-TGCCCACCAGAGAAAAACCC
CCC-TTT----------TTCCTTTACCTACCCA-AGTCTTATAA-----------AACG-
GTCCCACCC-C---ATTTCCCTTCGCTGAGTCTCTTTTCAGACTCAGCCTGCCTGCACCC
AGGTGA-----T---T-AAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGAGTG----------
>LTR7d1_chr10_91301350_91307329_2503_ZNF534_EncodeRepressed_C_7down___chr10_9130692291307329___1407
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCATG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAC-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCCA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAACCC
-CC-TTT----------TTCCTTTACCTTCCCA-AATCTTATAA-----------AATG-
GCCCCACCC-C---ATCTCCCTTTGCTGACTTTCTTTTCAGACTCAGCCCTCCTGCAACC
AGTTGA-----T---T-AAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGATGCAAGTG----------
>LTR7d1_chr2_192918303_192924835_2913_ZNF534_EncodeTxn_GRO3of7_7down____chr2_192918303192918721____1399
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCATG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCT--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------CTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTGC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTGGTG--------------
---------------------------AC-CCCCACCCC-TGCCCACCAGAGAATAACCC
-CC-CTT----------TTCCTTTACCTACCCA-AATCTTATAA-----------AACA-
CCCCATCCC-T---ATCTCCCTTCGCTGACTCTCTTTTCAGACTCAGCCCTCCTGCACCC
AGGTGA-----T---T-AAAAGCTTTATGGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACACAAGTGA---------
>LTR7d1_chr9_29902369_29902777_EncodeRepressed_SOLO_C_7down___chr9_2990236929902777___1408
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTACTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAACCC
CCC-TTT----------TTACTTTACCTACCCA-AATCCTATAA-----------AATG-
GCCCCACCC-C-T-ATCTCCCTTCGCTGA--ATCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----T---TAAAAAGCTTTATTGCTCATACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGATGCGAGTG----------
>LTR7d1_chr4_1236388812369679_3258_ZNF534_KAP1_k27ac_TSSflanking_NANOG_GRO2of7__chr4_1236388812364267____1377
----------------------------------------------AAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCAGG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCT--------------------------
------------------GGTTCCTGCCTTAAATGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGTCAGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCCCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CAACTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAACAC
CCC-TTT----------TTCCTTTACCGACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C---ATCTCCCTTCGCTGACTCTCTTTTCAGACTCAGCCTGCCTGCACCC
TGGTGA-----T---TAAAAAACTTTATTGTTCACACAAAGCCTG--TTT--GGCAATCT
CTTCATACAGATACGAGTGA---------
>LTR7d1_chr2_197709362_197709729_TSSflanking_SOLO_C_7down___chr2_197709362197709729___1367
-GTCAGGCCTCTGCACCAAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGTC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGGCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAT
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTTTCCTGG--------------
----CTCATCCTGGTTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACCCC-TGCCCGCCAGAGAAC----C
CCC-TTT----------TTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C---ATCTCCCTTCGCTGACTCTCTTTTCCGACTCAGCCCGCCTGCACCC
AGGTGA-----T---TAAAAAGCTTTATTGCTCACACA----------------------
-----------------------------
>LTR7d1_chrX_55868217_55868626_EncodeRepressed_SOLO_7down____chrX_5586821755868626____1409
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCAGG
TACACATCCAGA------------------------------------------------
-----------------------------TAGCT--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGTTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCTCGCCCC-TGCCCACCAGAGAACAAC-C
CCC-TTT----------TTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C---GTCTCCCTTCCCTGACTCTCTTTTCAGACTCAGCCTGCCTACTCCC
AGGTGA-----T---TAAAAAGCTTCATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGAGTGA---------
>LTR7d1_chr9_131547214_131551936_2158_ZNF534_enh_GRO4of7_7down____chr9_131547214131547620____1406
-GTCAGGCCTCCGAGCCAAAG-----------------------CTAAGCCATCATATCC
CCTGTGAA---------------------------------------------CTGCATG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCG--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGGAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCTCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-TCCCACCCC-TGCCCACCAGAAAAGAAC-C
CCC-TTT----------TTCCTTTACCTACGCA-AATCCTATAA-----------AACG-
GCCCCACCC-C---ATGTCCCTTCGCTGAC--TCTTTTCGGACTCAGCCTACCTGCACCC
AGGTGA-----T---TCAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGAGTGA---------
>LTR7d1_chr3_143116997_143117412_weakenh_SOLO_C_7down___chr3_143116997143117412___1408
TGTCAGGCCTCTGAGCCAAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCATG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCT--------------------------
------------------GGTCCTTGCCTTAACTGAT-----------------------
---GACATTCCACTACAAAAGAAGTGAAAATGG-CAGGTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AT-CCCCCCCCC-TGCCCACCAGAGAACAAC-C
CCC-TTT----------TTCCTTTACCTGCCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T---ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----T---TAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACTGATGCGAGTG----------
>LTR7d1_chr7_100922282_100928020_2913_ZNF534_k27ac_EncodeTxn_GRO3of7_7down____chr7_100922282100922669____1383
--------CTCTGAGCCAAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGC---------------------------
-----------------------CTGAAGTAACTGAA-----------------------
---GA------ATGACAAAAGAAGTGAAAATGGCCTTTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--CTGAAATTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AT-CCCCACCCC-TGCCCACCAGAGAAC--C-C
CCC-TTT----------TTCCTTTACCTACCCA-AATCTTAAAA-----------AATG-
GCCCCACCC-C---ATCTCCCTTCGTTGACTCTCTTTTCGGACTCAGCCTGCCTGTACCC
AGGTGG-----T---TA-AAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGTGAGTG----------
>LTR7d1_chr13_97652418_97652827_EncodeRepressed_SOLO_C_7down___chr13_9765241897652827___1409
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTT--------------
---------------------------AC-CCCCACCCC-TGCCCACCAGAGAACA-CCC
CCC-TTT----------TTCCTTTACCTACCCA-AATCTTATAA-----------AACA-
GCCCCACAC-C-T-ATCTCCCTTCGCTGACTGTCTTTTCAGACTCAGCCCGCCTGCACCC
AGGTGA-----T---TAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACACGAGTG----------
>LTR7d1_chr3_179517069_179522482_2680_ZNF534_EncodeRepressed_GRO5of7_GRO6of7_GRO7of7_7down____chr3_179517069179517479____1410
-GTCAGGCCTCAGAGCCCAAG-----------------------CTAAGCCATCATATTC
CCCGTGAC---------------------------------------------CTGCACA
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAT
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTGC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACCCC-TGCCTACCAGAGAACAACCC
CCC-TTT----------TTCCTTTACCTACCCA-AATCTTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCGCTGACTGTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----T---TAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACATGAGTGA---------
>LTR7d1_chr18_35216028_35222512_3016_ZNF534_weakenh_7down____chr18_3521602835216409____1380
---------------------------------------------TAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCATG
GACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AATCTCCCCCAG---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACCCC-TGCCCGCCAGAGAACAACCC
CCC-TTT----------TTCCTTTACCTACCCG-AATGTTATAA-----------AACA-
GCTCCACCC-C-T-ATCTTCCTTCGCTGACTCTCTTTTCGGATTCAGCCTGCCTGCACCC
AGGTGA-----T---TAAAAAGCTCTATTTCTCACACAAAGACTG--TTT--GGTGGTCT
CTTCACATGGACGCGAATGA---------
>LTR7d2_chr21_26227879_26233487_2979_KAP1_EncodeTxn_NANOG_GRO3of7_C_7down___chr21_2623308426233487___1401
TGTCAGGCCTCTGAGCCTAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------TTGCACA
TACACATCCAGA------------------------------------------------
-----------------------------TAGCT--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAATGAAAATGGCTTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTGC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAACCC
CCC-TTT----------TTCCTTTACCTACCCA-ACTCCTATAA-----------AACG-
GCCCCACTC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACACGAGTG----------
>LTR7d2_chr14_106659969_106660370_EncodeRepressed_SOLO_C_7down___chr14_106659969106660370___1401
TGTCAGGCCTCTGAGCCCAAG-----------------------ATAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACA
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAATGGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTATTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAT
ACT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCTCTCC-TGCCCGCCAGAGAACAACCC
CCC-TTT----------TTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCAGACTCAGCCCGCCTGCCCCC
AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACACGAGTG----------
>LTR7d2_chr9_81009084_81015281_1916_ZNF534_EncodeTxn_GRO3of7_7down____chr9_8100908481009481____1397
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGACATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GATATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGTTGTC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTATAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGTCCGCCAGAGAACAACCC
CCC-TTT----------TTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCT----GGACTCAGCCCGCCTGCACCT
AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACACGAGTGA---------
>LTR7d2_chr7_31466860_31472379_3225_ZNF534_EncodeRepressed_chimeric_C_7down___chr7_3147197731472379___1401
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
ACTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--CTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGCGAACAACCC
CCC-TTT----------TTCCTTTACCTACCCA-AATCCTGTAA-----------GATG-
GCCCCACCC-C-T-ATCTCCCTTCTCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAATCCTG--TTT--GGTGGTCT
CTTCATATGGACACGAGTG----------
>LTR7d2_chr9_3810901_3816765_3267_ZNF534_EncodeRepressed_GRO4of7_C_7down___chr9_38163673816765___1398
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCT--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCACCAGAA---AATCC
CCC-TTT----------TTCCTTTACCTACCCA-AATCCTATAA-----------AACA-
GCCCCACCC-C-T-ATCTCCCTTCACTGACTCTCTTTTTGGACTCAGCCTGCCTGCACCC
AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GATGGTCT
CTTCACACGGAAGCAAGTG----------
>LTR7d2_chr2_3543692835442587_3168_1_k4me3_EncodeTxn_NANOG_wanghigh_GRO2of7__chr2_3544218635442587___1401
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACC
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGGC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGGG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAAAACAACCC
CCC-TTT----------TTCCTTTACCTACCCA-AATCCTATAA-----------AATG-
GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC
AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCAAGTG----------
>LTR7d2_chr4_189925901_189931855_3216_ZNF534_KAP1_EncodeTxn_7down____chr4_189925901189926292____1391
-GTCAGGCCTCTGGGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGTT--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TA------------------CC----------TTAA----CTGATGAC
AAT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTC------------------
----------CTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AT-CCCCACTCC-TGCCCACCAGAGAACAACCC
CCC-TTT----------TTCCTTTACCTACCCA-AATCCTATAA-----------AATG-
GCCCCACCC-C-T-ATCTTCTTTCACTGGCTCTCTTTTCGGACTCAGCCCACCTGTACCC
AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GATGGTCT
CTTCACATGGACGCGAGTGA---------
>LTR7d2_chr9_69404587_69410267_3463_ZNF534_k27ac_weakenh_NANOG_C_7down___chr9_6940990869410267___1359
-----------------------------------------------------CATATCC
CCTGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCT--------------------------
------------------GATTCCT---------GAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTCTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCTGGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CTCTACTCC-TGCCCGCCAGAGAACAACCT
TCC-TTT----------CTCCTTTACCTACCTA-AATCCTATAA-----------AACG-
GCCCCACCC-C---ATCTCCTTTCGCTGACT--CTTTTCGGACTCAGCCGGCCTGCACCC
AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGCGAGTG----------
>LTR7d2_chr2_223188780_223195505_3334_ZNF534_ZNF90_KAP1_EncodeRepressed_GRO5of7_GRO6of7_GRO7of7_C_7down___chr2_223195102223195505___1401
TGTCAGGCCTCTGAGCCTAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCATG
AACACATCCAGA------------------------------------------------
-----------------------------TGGCT--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATAAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCGTCCTGGCTCAA--AAGCTCCCTTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CTCCACTCC-TGCCCACCAGAGAACAACCC
CCC-TTT----------TTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCTTTCGCTGACTCTCTTTTTGGACTCAGCCCGCCTACACCC
AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGATGCGAGTG----------
>LTR7d1_chr4_134012212_134018380_1805_ZNF534_KAP1_EncodeTxn_NANOG_GRO3of7_7down____chr4_134012212134012620____1397
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACACTCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------AGTTCCTGACTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCT-CCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-ACCCACTCC-TGCCCGCCAGAGAACAGCCC
CCC-TTT----------TTCCTTTACCTGCCCA-AGTCCTGTAA-----------AACG-
GTCCCACC--C-T-ATCTCCCTTCGCTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC
AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACATGCATGA---------
>LTR7d2_chr3_78221983_78222362_h3k27ac_EncodeTxn_SOLO_7down____chr3_7822198378222362____1378
-GTCAGACCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGTGC-
---------AGA------------------------------------------------
-----------------------------TGGCT--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACCAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TCAA----CTAATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTTCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACCACCC
CCC-TTT----------TTCCTTTACCTAACCA-AATCCTGTAA-----------AACA-
GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTTGGACTCAGCCCGCCTGCA---
-----------------AACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGTGAGTGA---------
>LTR7d2_chr3_72023126_72028900_3184_ZNF534_ZNF90_KAP1_EncodeRepressed_7down____chr3_7202312672023532____1396
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAATGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--GAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAAC---CC
CCC-TTT----------TTCCTTTACCTACCCA-AATCCTACAA-----------AATG-
GCCCCACCC-C-C-ATCTCCCTTCGCTGACTC--TTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCTTTATTGCTCACAGAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGTGAGTGA---------
>LTR7d2_chr11_127768919_127774895_3312_1_EncodeRepressed_GRO3of7_C_7down___chr11_127774501127774895___1394
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCAAG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAG---TGTAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAG---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCATTCC-TGCCCGCCAGAGAAC---CC
CCC-TTT----------TTCCTTTACCTACCAA-AATCCTATAA-----------AATG-
GCCCCA-CC-C-C-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--ATT--GGCGGTCT
CTTCACACAGACATGAGTG----------
>LTR7d2_chr13_7927408279279821_4787_ZNF534_ZNF90_KAP1_EncodeRepressed_GRO2of7__chr13_7927408279274491____1409
--TCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCATCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------CTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACCTTGTG--------------
---------------------------AC-TCCCACT-C-TGCCTGCCAGAGAACAACCC
CTC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACA-
GCCCCACCC-C-T-ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGTTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACGCGAGTGA---------
>LTR7d2_chr1_79488608_79494123_3448_ZNF534_k4me3_weakenh_C_7down___chr1_7949370979494123___1400
TGTCAGGCCTCTGAGCCCAGG-----------------------CTAAGCCATCATGTCC
CCTGTGAC---------------------------------------------CTGCATG
TACACATCCAGA------------------------------------------------
-----------------------------CGGCT--------------------------
------------------GGTTCCTGCCTTAACTGCT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGTCCTGTTCC-------------------
------------TG------------------CC----------TCAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TAACTTGTA--------------
---------------------------AC-CCCCACT-C-TGCCCGCCAGAGAACAACCC
CCC-TTTGACT-----------TTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCCCTGACTCTCTTTTTGGACCCAGCACACCTGCACCC
AGGGGA-----AA--TAAACAGCTTTATTGCTCACAGAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACACGAGTG----------
>LTR7d2_chr7_93639935_93645552_3199_transcribed_ZNF534_k4me3_TSS_NANOG_GRO1of7_7down____chr7_9363993593640344____1399
-GTCAGGCCTCTGAGCCCAAG-----------------------CTATGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACA
TACACATCCAGA------------------------------------------------
-----------------------------TGGTC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCC-GTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATTCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACT-C-TGCCCGCCAGAGAACAACCC
C-C-CTT---------TTTCCTTTACCTACCCA-AATCCTATAA-----------AATG-
GCCCCACCC-C-T-ATGTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGTTTTATTGCTGACTCAAAGCCTG--TTT--GGTGGTCT
CTTCACACGAACGCGAGTGA---------
>LTR7d2_chr5_1641996916425426_3925_ZNF534_k4me3_TSSflanking_NANOG_wangmod_GRO2of7__chr5_1641996916420378____1409
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCTTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTACTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTA--------------
---------------------------AC-CCCCACT-C-TGCCTGCCAGAGAACAACCC
C-C-TTTGACTGTAATTTTCCTTTACCTACTCA-AATCCTATCA-----------AACG-
GCCCCACCC-C-T-ATCGCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGAGTGA---------
>LTR7d2_chr7_101935024_101935434_h3k27ac_enh_SOLO_NANOG_7down____chr7_101935024101935434____1410
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTTACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACT-C-TGCCCGCCAGAGAACAAACC
CCT-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-TTCTCCCTTCGCTGACTCTCTTTTCAGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
TTTCACACGGACGTGAGTGA---------
>LTR7d1_chr3_186657774_186663690_1570_ZNF534_KAP1_EncodeTxn_GRO1of7_7down____chr3_186657774186658170____1396
-GTCAGGCCTCTGAGCCTAAG-----------------------CTAAGCCATCATATCC
CCTGAGAC---------------------------------------------CTGCACA
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGGCTTAACTGAT-----------------------
---GACATTCCACTACAAAAGAAATGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATAGC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCTTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCTACTCC-TGCCTGCCAGAGAACAACCC
CTC-T----------TTTTCCTTTACGTACCTA-AATCCTATAA-----------AATG-
GCCCCACCC-C---ATCTCCCTTCACTGACTC--TTTTTGGACTCAGCCCACCTGCACCC
AGGTG-------A--TTAAAAGATTTATTGCTCAGACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACACACATGA---------
>LTR7d1_chr1_239101236_239107062_3312_ZNF534_EncodeRepressed_GRO1of7_7down____chr1_239101236239101619____1383
-GTCAGGCCTCTGAGCCTAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTAAATG
TACACATGTAGG------------------------------------------------
-----------------------------TGGCC--------------------------
------------------TGTTCCTGCCTTAACTGAT-----------------------
---GACATTCTACCACAAAAGAAATGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGGC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTTC-----------------
-----------TGGCTCAA--AAGCCCCTTTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CTCTACTCC-TGCCTGCCAGAGAACAACCT
CCC-T----------TTTTCCTTTACTTACCTA-AATCCTATAA-----------AACG-
GTCCTACCC-C---ATCTCCTTTCGCTGACTC--TTTTCGGACTCAGCTTGCCTGCACCT
AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTC-
----ACACAGACACACATGA---------
>LTR7d1_chr9_7818069478186819_3369_ZNF534_ZNF90_EncodeTxn_GRO2of7__chr9_7818069478181102____1407
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACA
TACACATCCAGA------------------------------------------------
-----------------------------TGGCT--------------------------
------------------GGTTCCTGCCTTAACAGAT-----------------------
---GACATTCCACCACAAAAGACATGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCTGAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTA--------------
---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAACCC
TCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATTTTATAA-----------AATG-
GCCCTACCC-C---ATCTCCCTTCTCTGACTC--TTTTCGGACTCAGCCCACCTGCACCC
AGGTG-------A--TTAAAAGCTATATTGTTCACACAAAGCCTG--TTT--GGTAGTCT
CTTCACACAGACACACATGA---------
>LTR7d1_chr18_42991497_42996809_3227_1_EncodeRepressed_7down____chr18_4299149742991957____1408
-GTCATGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCATG
TACACATTCAAA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------TGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACGAAAGAAATGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGACTCAA--AAGCTCCCGTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAACCC
CCC-TTTGACTGTAATTTTCCTCTACCTACCCA-AATCTTATAA-----------AATG-
GCCCCACCC-C---ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCGGCC
AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--TGTGGTCT
CTTCACACAGATGCACATGA---------
>LTR7d1_chr6_137060268_137067121_3083_ZNF534_EncodeTxn_GRO4of7_C_7down___chr6_137066710137067121___1408
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACA
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------AGCTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACGAAAGAAATGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATAAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCTTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGT---------------
---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAACCC
CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTAGGACTCAGCCCACCTGCACCC
AGGTG-------A--TTAAAAGCTTTATTGCACACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCAAGTG----------
>LTR7d2_chr8_112195874_112201403_4669_ZNF534_ZNF90_KAP1_EncodeRepressed_NANOG_7down____chr8_112195874112196275____1401
-GTCAGGTCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAATGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
TTT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATTCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAACCC
TCC-T----------TTTTCCTTTACCTACCCA-AATCCTATAA-----------AACA-
GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCTCCC
AGGTG-------A--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--CATGGTCT
CTTCACACGAACACAAGTGA---------
>LTR7d1_chr12_25163213_25169508_3107_ZNF534_EncodeTxn_GRO3of7_7down____chr12_2516321325163617____1403
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCTAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCGCCACAAAAAAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTTAA--AAGCTCTCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAACCC
CTC-TTTGACGGTGATTTTCCTTTACCTACGCA-AATCTTATAA-----------AACG-
GCCCTACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCATATGGACG----------------
>LTR7d1_chr6_62791671_62797450_2959_ZNF534_KAP1_EncodeRepressed_GRO1of7_7down____chr6_6279167162792025____1354
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGTC---------------------------------------------CTGCACG
TACACATCTAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GAC------------------------------------------------------
------------------------------------------------------------
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTATCCTGG--------------
----CTCTTCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAACCC
ACC-TTTGACTGTAATTTTCCTTTACCTACACA-AATCTTATAA-----------AATG-
GCGCCACCC-C-T-ATCGCCCTTTGCT----CTCTTTTCAGACTCAGCCCACCTGCACCC
AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG---TT--GGTGGGCT
CTTCACATGGACACGAGTGA---------
>LTR7d1_chr5_5076271_5076678_h3k27ac_EncodeRepressed_SOLO_NANOG_C_7down___chr5_50762715076678___1407
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACACCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAATGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATGCTGGCTCAA--AAG--CCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAACTC
CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG-
GCCCCACCC-A-T-ATCTCCCTTCGTTGACTCT--TTTCAGACTCAGCCCGCCTGCATCC
AGGTG-------A--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACGTGTGTG----------
>LTR7d1_chr4_20629771_20635978_4427_ZNF534_ZNF90_KAP1_EncodeRepressed_NANOG_C_7down___chr4_2063556920635978___1409
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTAAT-----------------------
---GACATTCCACCACAAAAGAAATGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACCCC-TGCCTGCCAGAGAACAACCC
GGC-TTTGACTGTAATTTTCCTTTACCTATCCA-AATCTTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC
AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GATGGTCT
CTTCACATGGATGTGTATG----------
>LTR7d2_chr3_890694_896413_4680_ZNF534_EncodeTxn_GRO4of7_C_7down___chr3_896002896413___1401
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCATG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------AGATCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TA------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGTTTCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGTCTGCCAGAGAACAACCC
CTC-T----------TTTTCCTTTACCTACCCA-AATCTTATAA-----------AATG-
GCCCCACCC-C-T-ATCTCTCTTCACTGACTCTCTTTTTGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--CTT--GGTGGTCT
TTTCACATGGATGCACATG----------
>LTR7d2_chr8_8168723_8183856_2383_ZNF534_KAP1_EncodeRepressed_GRO3of7_7down____chr8_81687238169074____1350
-GTCAGTCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCT
CCTGTGAC---------------------------------------------CTGCATG
TACATATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACAT----------------------------------------------------
------------------------------------------------------------
--T---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTTG--------------
----CTCATCCTGGCTCCA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------GC-CCCCACTCC-TGCCTGCCAGAGAACAACCC
CCC-T----------TTTTCCTTTACCTACCCA-AATCCTATAA-----------AATT-
GCCCCACCC-C-T-ATCTCCCTTCACTGACTCTCTTTTTGGACTCAGCCCACCTGTACCC
AGGTGA-----AA--TAAACAGCTTTACTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGATGCATGTGA---------
>LTR7d2_chr8_12481807_12496943_2385_ZNF534_KAP1_EncodeRepressed_chimeric_GRO3of7_C_7down___chr8_1249659212496943___1350
TGTCAGTCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCT
CCTGTGAC---------------------------------------------CTGCATG
TACATATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACAT----------------------------------------------------
------------------------------------------------------------
--T---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTTG--------------
----CTCATCCTGGCTCCA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------GC-CCCCACTCC-TGCCTGCCAGAGAACAACCC
CCC-T----------TTTTCCTTTACCTACCCA-AATCCTATAA-----------AATT-
GCCCCACCC-C-T-ATCTCCCTTCACTGACTCTCTTTTTGGACTCAGCCCACCTGTACCC
AGGTGA-----AA--TAAACAGCTTTACTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGATGCATGTG----------
>LTR7d2_chr3_176061364_176066982_4516_ZNF534_EncodeTxn_GRO4of7_7down____chr3_176061364176061752____1388
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAACCT
CCC-T----------TTTTCCTTTACCTACCCA-AATCCTATAA-----------AATG-
GCCCCACCC-C-T-ATCTCCCTTCACTGAC-------------TCAGCCTGCCTGAACCC
AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGCAAGTGA---------
>LTR7d2_chr21_16914128_16919898_3219_ZNF534_KAP1_EncodeRepressed_7down____chr21_1691412816914528____1400
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCT--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACCAAAGAAATGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGGC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AATCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-AGCCTGCCAGAGAACAATCC
CCC-T----------TTTTCCTTTACCTACCCA-AATCCTATAA-----------AAGG-
GCCCCACCC-C---ATCTCCCTTCCTTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--CTT--GGAGGTCT
CTTCACACGGACGCGCATGA---------
>LTR7d2_chr4_52834802_52835186_h3k27ac_enh_SOLO_FOXP1_NANOG_44108_SMAD11_TCF4_7down____chr4_5283480252835186____1383
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGG------------------------------------------------
-----------------------------TGGCT--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCATCACAAAAGAAATGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGGC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGTCTCAA--AAGCTCCCCTGC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CA---------------------
------------------------------CCCCACTCC-TGCCTGCCAGAGAACAACCC
TCC-T----------TTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C---ATCTCCCT--------TCACTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCTTTATTGCTCGCACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGAGTGA---------
>LTR7d2_chr4_166520700_166526430_3325_ZNF534_EncodeRepressed_7down____chr4_166520700166521091____1391
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CTTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAATGAAAATAGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGGC
GTT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CTCCACTCC-TGCCTGCCAGAGAACAACCC
CCC-T----------TTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C---ATCTCCCTTCACTAACT--CTTTTCAGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGTTTTATTGCTCACACAAAGCCTG--TTT--GCTGGTCT
CTTCACAAGGATG----------------
>LTR7d2_chr2_179051593_179057323_3319_1_EncodeTxn_GRO3of7_C_7down___chr2_179056938179057323___1385
TGTCAGACCTCTGAGCCTAAG-----------------------CTAAGCTATCACATCC
CCTGTGAC---------------------------------------------CTGCACA
TACATATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------AGTTCCTGCCTTAACTAAT-----------------------
---GACATTCCACCACAAAAGA-----AAATAGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGGC
ATC---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGACTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAAC--CCC
CCC-T----------TTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C---ATCTCCCTTCATTGACT--CTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGATG----------------
>LTR7d2_chr2_79211346_79217707_2946_ZNF534_KAP1_EncodeRepressed_GRO4of7_C_7down___chr2_7921730979217707___1398
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATTC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGACT--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACTACAAAAGAAATGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CT------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------CC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------GC-CCCCACTCC-TGCCCGCCAGAGAAC---CC
CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG-
GCCCCACCT-C-T-ATCTCCCTTCACTGACTCTCTTTTCAGACTCAGCCCCCCTGCACCC
AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACTCACATG----------
>LTR7d1_chr2_22970193_22970590_enh_SOLO_NANOG_44108_C_7down___chr2_2297019322970590___1396
TGTCAGGCCTCTGAGCCCAAG------------------------TAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCATT
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGTT-----------------------
---GGCATTCCACCACAAAATAAATGAAAATGGCCCGTTCC-------------------
------------TG------------------AC----------TTAA----CTGATGGC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATGCTGGCTTAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCCCTCC-TGCCTGCCAGAGAACAACCC
CCC-TT----------TTTCCTTTACCTACCCA-AATCCTATCA-----------AATG-
GCCCCACCC---T-ATCTCCCTTTGCTGACTC--TTTTTGGACTCAGCCTGCCTGCACCC
AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACAGGGACGCGTGTG----------
>LTR7d1_chr11_94345725_94351415_4087_ZNF90_KAP1_EncodeTxn_7down____chr11_9434572594346118____1393
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCATG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAATGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGGC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCATTCC-TGCCCGCCAGAGAACAACCC
CCC-TT----------TTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GTCCCACCC---T-ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAACCTGCCTGCACCC
AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--CTT--GGTGGTCT
CTTCAAATGGAC----GTG----------
>LTR7d1_chr7_125917557_125924110_3594_ZNF534_KAP1_k27ac_EncodeTxn_GRO3of7_7down____chr7_125917557125917965____1407
-GCCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
AAT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATGCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCAC-CC-TGCCCGCCAGAGAACAACCC
CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AATG-
GCCCCACCC---C-ATCTCCCTTTGCTGACTCTCTTTTTGGATTTAGCCAGCCTGCACCC
AGGTG-------A--TTGAAAGCCTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATCGACGCTCATGA---------
>LTR7d1_chr8_56439026_56439435_EncodeRepressed_SOLO_7down____chr8_5643902656439435____1409
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------AGTTCCTGCTTTAACTGAT-----------------------
---GACATTCTACCACAAAAGAAGTGAAAATGGCCTGTTCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCGTCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACACC-TGCCCGCCAGAGAACAACCC
CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AATG-
GCCTCACCC-T-T-ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGATG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACCGACGCGCATGA---------
>LTR7d1_chr3_153226150_153232523_3380_ZNF534_EncodeRepressed_GRO7of7_C_7down___chr3_153232111153232523___1409
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAGAAGAAGTGAAAATGGCCTGTTCG-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACACC-TGCCCGCCAGAGAACAACCC
CCC-TTTGACTATAACTTTCCTTTACCTACCCA-AATCTTATAA-----------AATG-
GCCCCACCC-A-T-GTCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTG-------A--TAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATG----------
>LTR7d1_chr14_86731586_86737060_2791_1_EncodeTxn_NANOG_7down____chr14_8673158686731996____1409
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAACCC
TCC-TTTGACTGTAATTTTCCTTTATCTACCCA-AATCTTATAA-----------AATG-
GCCCCACCC-T-T-ATCTCCCTTTGCTGACTCTCTTTTCGGATTCAGCCCACCTGCACCC
AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACAGGGACGCGCATGA---------
>LTR7d1_chr3_141204901_141211729_3245_ZNF534_EncodeTxn_GRO3of7_7down____chr3_141204901141205306____1405
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGGAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAGTTCCTTCT---GG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAACCC
-CC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTCGGACTTAGCCCACCTGCACCC
AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CCTCACATGGACAAGCACGA---------
>LTR7d1_chr13_48056344_48062289_3125_ZNF534_ZNF90_KAP1_EncodeTxn_NANOG_7down____chr13_4805634448056764____1407
-GTCAGGCTTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCGCAAAAGAAATGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAAGCC
CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATC--ATAA-----------AATG-
GCCCCACCC-C-T-ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTG-------A--TTAAAAGCTTTATTGCGCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACGTGCATGA---------
>LTR7d1_chr13_77933223_77939379_1838_ZNF534_ZNF90_KAP1_EncodeTxn_GRO3of7_C_7down___chr13_7793898077939379___1399
TGTCAGGCCTTTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAATGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCA----------A--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCTGCCAGAGGACAACCC
CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AATG-
GCCCCACCC-C-T-ATCTCCCTTTACTGACTCTCTTTCTGGACTCAGCCCACCTGCACCC
AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAACCCTG--TTT--GGTGGTCT
CTTCACACTGACGTGCATG----------
>LTR7d1_chr13_81866095_81872431_2976_ZNF534_ZNF90_KAP1_EncodeRepressed_GRO3of7_7down____chr13_8186609581866504____1409
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------ATGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCT--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCTACCACAAAAGAAATGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ACT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTTC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAACCC
CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AATG-
GCCCCAACC-C-T-ATCTCCCTTCACTGACTCTCTTTTTGGACTCAGCCCACCTGCACCC
AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGATGTGCATGA---------
>LTR7d1_chr5_15702738_15703151_weakenh_SOLO_C_7down___chr5_1570273815703151___1409
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACA
TACACATCCAGA------------------------------------------------
-----------------------------TGGCT--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAACGAAAATGGCCTGTTAC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
GTT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAG--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAACCC
CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTGGCTGACTCTCTTTTCGGACTCAGCTCGCCTGCACCC
AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGCGCATG----------
>LTR7d1_chr4_63984936_63985345_EncodeTxn_SOLO_C_7down___chr4_6398493663985345___1409
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACA
TACACATCCAGA------------------------------------------------
-----------------------------TGGCG--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAATGAAAACGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATTCTGGCTCAA--AAGCTCCCCTAA---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------AAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAACCC
CGC-TTTGACTGTAATTTTCCTTTATCTACCCA-AATCTTATAA-----------AACG-
GCCCCACCC-C-T-ACCTCCCTTAGCTGACTCTCTTTTCGGACTCAGCCCGCTTGCACCC
AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACGCGCATG----------
>LTR7d1_chr4_154918329_154924563_2955_ZNF534_KAP1_EncodeTxn_GRO3of7_C_7down___chr4_154924155154924563___1408
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACA
TACACATCCAGA------------------------------------------------
-----------------------------TGGCT--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTTCACCACAAAAGAAATGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAACCC
CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AATG-
GCCCCACCC-C---ATCTCCCTACGCTGACTCTCTTTTCGGACTCAGCACGCCTGCACCC
AGATG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACATGCTTG----------
>LTR7d1_chrX_96624025_96630448_3323_ZNF534_KAP1_EncodeRepressed_GRO3of7_7down____chrX_9662402596624427____1402
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGTCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGACT--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCTACCACAAAAGAAATGAAAATGGCCTATTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAT---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAA----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAACCC
CTT-T--GACTGTAATTTTCCTTTACCTACCCA-AATCCTGTAA-----------AACG-
GCCCCACCC-C---ATCTCCCTCTGCTGACTCT----TCGGACTCAGTCTGCCTGCACCC
AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACGCGCATGA---------
>LTR7d1_chrX_99158722_99165186_3398_ZNF534_EncodeRepressed_C_7down___chrX_9916478799165186___1399
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACA
TACACATCCAGA------------------------------------------------
-----------------------------TGGCT--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAAGGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GTG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAATCC
CCC-T----------TTTTCTTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGTCTGCCTGAACCC
AGGTG-------A--TGAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGATGCGCATG----------
>LTR7d1_chr2_231569533_231569891_EncodeRepressed_SOLO_7down____chr2_231569533231569891____1347
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CATGTGAC---------------------------------------------CTGCACA
TACACATCCAGA------------------------------------------------
-----------------------------AGGCC--------------------------
------------------GGTTTGTGCCTTAACTGAT-----------------------
---GACAT----------------------------------------------------
------------------------------------------------------------
--T---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACCTTGTG--------------
---------------------------AC-CCCCAC-CC-TGCCCGCCAGAGAACAACCC
CCC-T----------TTTTCCTGTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C---ATCTCCCTTCGATGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTG-------A--TTAAAAGCTTTATCGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATGA---------
>LTR7d1_chr8_75217076_75217474_h3k27ac_enh_SOLO_NANOG_C_7down___chr8_7521707675217474___1398
TGTCAGGCCTCTGGGCCCAAG-----------------------CTAAGTCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
CACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTTCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CCGACGAG
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACCTTGTG--------------
---------------------------AC-CCCAACTCC-TGCCCGCCAGCGAACAGCCC
CCC-T----------TTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C---ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCTGCCTGCACTC
AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGTGCATG----------
>LTR7d1_chr11_23887264_23892921_4440_ZNF534_EncodeRepressed_GRO4of7_C_7down___chr11_2389252623892921___1395
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ACT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCACCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAAC---CC
CCC-T----------TTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACAC-C---ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCTCGCCTATACCC
AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAACCTG--TTT--GGTGGTCT
GTTCACATGGACGTTCATG----------
>LTR7d1_chr2_47698281_47698679_h3k27ac_enh_SOLO_NANOG_C_7down___chr2_4769828147698679___1398
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCATATCC
CCTGAGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGCTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCCCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACCTTGTG--------------
---------------------------AC-CCCCACTCC-AGCCCGCCAGAGAACAACCC
CCC-T----------TTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C---ATCTCCCTTCGCTGACTGTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTA-------A--TTAAAAGCATTATTGCTCACACAAAGCCTG--TTT--AGTGGTCT
CTTCACACGGACGTGCATG----------
>LTR7d1_chr6_76562300_76562692_h3k27ac_TSS_SOLO_FOXP1_NANOG_SOX2_7down____chr6_7656230076562692____1392
---CAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCTTATCC
CCTGTGAC---------------------------------------------CTGCACA
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCTACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAACCC
CCC-T----------TTTTCCTTTACCTACCCA-AATCCTATAA-----------AAAG-
GCCCCACCC-C---ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC
AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACACAC-------------
>LTR7d1_chr8_131740755_131746622_3238_ZNF534_EncodeTxn_7down____chr8_131740755131741151____1395
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGACATCATATCC
CCTGTGAC---------------------------------------------CTGCACA
TACACATCCACA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTTA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC------------GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAACCC
CCC-T----------TTCTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCGCTGACT--CTTTTCAGACTCAGCCTGCCTGCACCC
AGTTG-------A--TTAAAAGCTTTATTACTCACACAAAGCCTG--TTT--AGTGGTCT
CTTCACACGGACACACATGA---------
>LTR7d1_chr8_131310175_131315847_4355_transcribed_ZNF534_k4me3_EncodeTxn_NANOG_SMAD11_wanghigh_GRO1of7_7down____chr8_131310175131310564____1389
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------ATGCACA
TACACATCCAGA------------------------------------------------
-----------------------------TGGCT--------------------------
------------------GGTTCCTGCCTTAAGTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCA----------A--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAACCC
CCC-T----------TTTTCCTTTACCTACCCA-AATCCTATAA-----------AAGG-
GCCACACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCAGACTCAGCCTGCCTGCACCC
AGGTG-------A--TTAAAAACTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACAGGGACATGCATGA---------
>LTR7d1_chr6_141452825_141460680_4854_ZNF534_EncodeRepressed_NANOG_GRO1of7_7down____chr6_141452825141453224____1399
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATTATATCC
CCTGTGAC---------------------------------------------CTGCACA
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CT----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AGGCTACCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAACCC
GCC-T----------TTTTCCTTTACCTACCCA-AATCCTGTAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTGGCTGACTATCTTTTCGGACTCAGCCTGCCTGCACCC
AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGATGCACATGA---------
>LTR7d1_chr9_126074450_126080414_3478_ZNF534_ZNF90_KAP1_EncodeTxn_GRO4of7_C_7down___chr9_126080018126080414___1395
TGTCAGACCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACA
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTTCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAAAA----CC
CCC-T----------TTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTG-------A--TTAATATCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACACGCATG----------
>LTR7d1_chr21_5601124_5601526_SOLO_C_7down___chr21_56011245601526___1399
TGTCAGGCCTCTGAGCCTAAG-----------------------CTAAGCCATCGTACCT
TCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCTTGTTTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCGAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAATCC
CCC-T----------TTTTCCTTTACCTACCCA-AATCCTATAA-----------AATG-
GCCCCATCC-C-T-ATCTACGTTTGCTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC
AGGTG-------A--TTAAAAGCTTTATTGCTTACACGAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACCCCCATG----------
>LTR7d1_chr21_7096350_7096752_SOLO_C_7down___chr21_70963507096752___1399
TGTCAGGCCTCTGAGCCTAAG-----------------------CTAAGCCATCGTACCT
TCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCTTGTTTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCGAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAATCC
CCC-T----------TTTTCCTTTACCTACCCA-AATCCTATAA-----------AATG-
GCCCCATCC-C-T-ATCTACGTTTGCTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC
AGGTG-------A--TTAAAAGCTTTATTGCTTACACGAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACCCCCATG----------
>LTR7d1_chr21_7478128_7478530_SOLO_C_7down___chr21_74781287478530___1399
TGTCAGGCCTCTGAGCCTAAG-----------------------CTAAGCCATCGTACCT
TCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCTTGTTTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCGAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAATCC
CCC-T----------TTTTCCTTTACCTACCCA-AATCCTATAA-----------AATG-
GCCCCATCC-C-T-ATCTACGTTTGCTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC
AGGTG-------A--TTAAAAGCTTTATTGCTTACACGAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACCCCCATG----------
>LTR7d1_chr21_6219444_6219846_SOLO_7down____chr21_62194446219846____1399
-GTCAGGCCTCTGAGCCTAAG-----------------------CTAAGCCATCGTACCT
TCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCTTGTTTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCGAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAATCC
CCC-T----------TTTTCCTTTACCTACCCA-AATCCTATAA-----------AATG-
GCCCCATCC-C-T-ATCTACGTTTGCTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC
AGGTG-------A--TTAAAAGCTTTATTGCTTACACGAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACCCCCATGA---------
>LTR7d1_chr21_7659875_7660277_SOLO_7down____chr21_76598757660277____1399
-GTCAGGCCTCTGAGCCTAAG-----------------------CTAAGCCATCGTACCT
TCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCTTGTTTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCGAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAATCC
CCC-T----------TTTTCCTTTACCTACCCA-AATCCTATAA-----------AATG-
GCCCCATCC-C-T-ATCTACGTTTGCTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC
AGGTG-------A--TTAAAAGCTTTATTGCTTACACGAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACCCCCATGA---------
>LTR7d1_chr3_190144600_190150202_3267_ZNF534_ZNF90_KAP1_EncodeTxn_NANOG_7down____chr3_190144600190145007____1398
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGTCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACCTTGTG--------------
---------------------------AT-CCCCACTCC-TGCCCACCAGAAAACAACCC
CCT-T----------TTTTCCTTTATCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C---ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC
CGGTG-------A--TTAAAAGCTTTATTGCTTACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACATGCATGA---------
>LTR7d1_chr11_94641601_94647311_4553_transcribed_ZNF534_k4me3_EncodeTxn_NANOG_GRO1of7_7down____chr11_9464160194642009____1399
-GTCAGGCCTCTGAGCCCAAG-----------------------CTGAGCCATCATGTCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGTG--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAAAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAACCC
CCT-T----------TTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG-
GCCCCACCC-C-T-ATCTGCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCGTGCACCC
AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTTACACAGACGCACATGA---------
>LTR7d1_chr1_241433889_241439882_3369_ZNF534_ZNF90_KAP1_EncodeRepressed_GRO3of7_7down____chr1_241433889241434289____1399
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGTCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAA----TACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAGCCACCC
CCC-T----------TTTTCCTTTACCTACCCA-AGTCCTATAA-----------AACA-
GCGCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACTTGCACCC
AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACCCACATGA---------
>LTR7d1_chr5_66936361_66936718_weakenh_SOLO_C_7down___chr5_6693636166936718___1348
TGTCAGGCCTCTGAGCCTAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCATG
TACACATCCAGA------------------------------------------------
-----------------------------TGGAC--------------------------
------------------TGTTCCTGCCT-------------------------------
------------------------------------------------------------
---------------------------------------------TAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACCTTGTG--------------
---------------------------AC-CCGTACTCC-TGCCCGTCAGAGAACAACCC
CCT-T----------TTTTCCTTTACCTACCCA-AATCTTATAA-----------AATG-
GCCCCACCC-C-T-ATCTCCCTTCCCTGACTCTCTTTTCGGACTTAGCCCGCCTGCACCC
AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTC--AGTAGTCT
CTTCACAGGGACGTACATG----------
>LTR7d1_chr2_172548349_172548758_h3k27ac_EncodeRepressed_SOLO_7down____chr2_172548349172548758____1358
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCAAG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCT-------------------------------
------------------------------------------------------------
---------------------------------------------TAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAA---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACCCTGTG--------------
---------------------------AA-CCCCACTCC-TGCCAATCAGAGAACAACCC
CCC-T----------TTTTACTTTACCTACCCA-AATCTTATAA-----------AATG-
GCCCCATCC-T-T-ATATCCCTTTGCTGACTCTCCTTTCGGACTTAGCCCGCCTGCACCC
AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGATGTGAGTGA---------
>LTR7d1_chr6_145103186_145108857_4564_ZNF534_KAP1_EncodeTxn_GRO5of7_GRO6of7_GRO7of7_C_7down___chr6_145108459145108857___1398
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCT--------------------------
------------------GGTTCCTGCCTTAACTAAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTCTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACCTGGTG--------------
---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAACCC
CCC-T----------TTTTCCTTTACCTACCCA-AATCCTATAA-----------AATG-
GCCCCACCC-C---ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCGCACGGACGTGCATG----------
>LTR7d1_chr2_38080802_38086512_4488_ZNF534_k4me3_weakenh_NANOG_SMAD11_GRO3of7_C_7down___chr2_3808611538086512___1397
TGTTAGGCCCCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
CACACATCCAGA------------------------------------------------
-----------------------------TCGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACCTTGTG--------------
---------------------------AC-TCCCACTCC-TGCCTGCCAGAGAACAACCC
CCC-T----------TTTTCCTTTACCTACCCA-AATCATATAA-----------AACG-
GCCCCACC----T-GTCTCCCTTGGCTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC
AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GATGGTCT
CTTCACACGGACATGCATG----------
>LTR7d1_chr2_67331517_67337601_3465_transcribed_ZNF534_k4me3_TSS_wanghigh_GRO1of7_7down____chr2_6733151767331914____1397
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
CACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAATTGAT-----------------------
---GACATTCCACCACAAAAGAAATGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGACATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAACCC
CCC-T----------TTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCACTGACTCT--TTTTGGACTCAGCCCACCTGCACCC
AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCGCACAGAAGTGCATGA---------
>LTR7d1_chr12_29275067_29275466_EncodeTxn_SOLO_C_7down___chr12_2927506729275466___1399
TGTCAGGCCTCTGACCCCAAG-----------------------CTAGGCCATCATATCC
CCAGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATC---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAT---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAACCC
ACC-T----------TTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-GTCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGATG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGCGCATG----------
>LTR7d1_chr6_169674740_169675135_EncodeRepressed_SOLO_C_7down___chr6_169674740169675135___1395
TGTCAGGCCTCTGAGCCCAAG-----------------------CTCGGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCATG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCT--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------CG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACTTTGTG--------------
---------------------------AC-CCCTACTCC-TGCCCGCCAGAGAACAACTC
CCC-T----------TTTTCCTTTACCTACCCA-AATCCTATAA-----------AA---
-CCCCACCC-C---ATTGCCCTTTGCTAACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGCGCATG----------
>LTR7d1_chrX_16044720_16050414_4804_ZNF534_ZNF90_KAP1_EncodeTxn_chimeric_GRO3of7_C_7down___chrX_1605001616050414___1398
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAT---------------------------------------------TTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TCGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATAGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAACCC
CCC-T----------TTTTCCTTTACCTACCCA-AATCCTATAA-----------AATG-
GCCCCAACC-C---ATCTCCCTTTGCTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC
AGGTG-------A--TTAAAAGCTTTATTATTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGCACATG----------
>LTR7d2_chr2_170977458_170983386_4819_ZNF534_KAP1_EncodeTxn_NANOG_GRO3of7_C_7down___chr2_170982986170983386___1399
TGTCAGGCCTCTGAGCCCAAG-----------------------CTATGCCATCATATCC
CCGGTGAC---------------------------------------------CTGCATG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCT--------------------------
------------------GGTTCCAGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTTA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAACCC
CCC-T----------TTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTG-------A--TTAAACGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGAATG----------
>LTR7d1_chr5_25445823_25446221_h3k4me3_TSS_SOLO_44108_C_7down___chr5_2544582325446221___1398
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAACCC
CCC-T----------TTTTCCTTTACCTACCCA-AATCCTATAA-----------AACA-
GCCCCATCC---T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATG----------
>LTR7d1_chr4_128640894_128646609_3062_ZNF534_KAP1_EncodeTxn_NANOG_GRO3of7_C_7down___chr4_128646200128646609___1398
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCTATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCT--------------------------
------------------GGTTCCTACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAACTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-TCCCACTCC-TGCCCGCCAGAGAATAACCC
CCC-T----------TTTTCCTTTACCTACCCA-AATCTTATAA-----------AACA-
GCCCCACCC-C-T-ATC-CCCTTTGCTGACTCTCTCTTCGGACTCAGCCCGCCTGCACCC
AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATG----------
>LTR7d2_chr4_170116430_170122158_3295_ZNF534_ZNF90_KAP1_TSSflanking_7down____chr4_170116430170116838____1398
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATGTCT
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGG------------------------------------------------
-----------------------------TGGCT--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GGCATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGACTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CACTACT-C-TGCTTGCCAGAGAATGACCC
CCC-T----------TTTTCCTTTATCTACCCA-AATCTTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTA--TTT--GGTGGTCT
CTTCACACGGACGTGCATGA---------
>LTR7d1_chr11_118717034_118731855_2447_ZNF534_ZNF90_KAP1_EncodeTxn_wanghigh_GRO1of7_C_7down___chr11_118731446118731855___1408
-GTCAGGCCTCTGAGCCCAAA-----------------------ATAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---GTCATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GCC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCTTCCTGGCTCAA--AATCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCTACTCC-TGCCTGCCAGAGAATAACCC
CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AATG-
GCCCCACTC-C-T-ATCTGTCTTTGCTGACTCTGTTTTCGGACTCAGCCCACCTGCACCC
AGGTG-------A--TTAGAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTTACATGGACGCACATG----------
>LTR7d1_chr14_84500250_84505973_4521_KAP1_EncodeTxn_NANOG_GRO4of7_C_7down___chr14_8450556584505973___1408
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCACATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCC-ACTCC-TGCCTGCCAGAGAACAACCC
CCC-TTTGACTGTAATTTTCCTTTACCTATCCA-AATCTTATAA-----------AATG-
GCCCCACCC-C-T-ATCTCTCTTCACTGACTCTCTTTTCAGACTCAGCCTGCCTGCACCC
AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGTCTG--TTT--GGTGGTCT
CTTTACACGGATGCGCATG----------
>LTR7d1_chr20_23764763_23765176_weakenh_SOLO_NANOG_TCF4_7down____chr20_2376476323765176____1407
-GTCAGGACTCTGAGCCTAAG-----------------------CTAAGCCATCATATCC
TCTGTGAC---------------------------------------------TTGCAGG
TACACATCCAGA------------------------------------------------
-----------------------------TTGCC--------------------------
------------------ATTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGAAGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAACCC
CCC-TTTGACTGTAATTTTCCTTTACCTACCCT-AATCTTATAA-----------AACA-
GCCCCACCC-C---ATCTCTCTTTGCTGACTCT-CTTTCAGACTCAGCCTGTCTGCATCC
AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--AGTGGTCT
CTTCACACAGACGCACATGA---------
>LTR7d1_chr5_124497035_124502739_4482_ZNF534_KAP1_TSSflanking_NANOG_44108_GRO1of7_7down____chr5_124497035124497443____1408
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGTC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAATAGAAGTGAAAATGTCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTTAAATTCCTTCTCTTGG--------------
----CTCATCCTGGCTCAC--TAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACT-C-TGCCCGCCAGAGAACAACCC
CCC-TTTGACTGTAATTTTCCCTTACCTACCCA-AATCTTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTGTTTTCAGACTCACCCTGCCTGCACCC
AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--AGTGTTCT
CTTCATACGGATGTGCATGA---------
>LTR7d1_chr12_99715182_99721737_2820_1_k27ac_EncodeTxn_7down____chr12_9971518299715589____1406
-GTCAGGCCTC-GAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTAAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCATAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGACTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAATTC
CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCT--TTTCGGACTCAGCCCGCCTGCACCC
AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCAG--TTT--GGTGGTCT
CTTCACACGGATGCGCATGA---------
>LTR7d1_chr7_49101085_49101493_h3k27ac_enh_SOLO_NANOG_44108_SMAD11_TCF4_7down____chr7_4910108549101493____1408
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATAC
CCTGTGAC---------------------------------------------ATGCACT
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTTCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACT-C-TGCCCGCCAGAGAACAACCC
CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG-
GCTCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCAGCCTGCACCC
AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCACATGA---------
>LTR7d1_chr3_3246093932466915_3206_1_EncodeRepressed_GRO2of7__chr3_3246651032466915___1405
TGTCAGGCCTCTAAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAT
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GAGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAAC---CC
CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG-
GCCCCACCC-C---ATCTTCCTTCGCTGACTCCCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCACATG----------
>LTR7d1_chr8_30035257_30035666_SOLO_NANOG_7down____chr8_3003525730035666____1408
-GTCAGGCCTCTGAGCCCAAG-----------------------GTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCTGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACACAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACT-C-TGCCCACCAGAGAACAACCC
CCC-TTTGACTGTAATTTTCCTTTATCTACCCA-AATCCTACAA-----------AACG-
GCTCCACCC-T-T-ATCTCCCTTCGATGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTG-------A--TTAAAAGCTTTATTTCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATGA---------
>LTR7d1_chr14_7112420771130006_3092_ZNF534_ZNF90_KAP1_EncodeTxn_NANOG_GRO2of7__chr14_7112420771124614____1407
-GTCAGGCCTCTGAGCCTAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CCGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACT-C-TGCCCGCCAGAGAACAACCC
C-C-TTTGACTGTAATTTTCCTTTATCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCTTTTGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACACGCATGA---------
>LTR7d1_chr7_120885700_120891391_4226_ZNF534_ZNF90_KAP1_EncodeTxn_C_7down___chr7_120890984120891391___1407
TGTCAGGCCTCTGAGCCTAAG-----------------------CTAAGCCATCATA-CC
CCTGTGAC---------------------------------------------CTGCACT
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------AGTTCCTGCCATAACTGAT-----------------------
---GACATTGCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACT-C-TGCCCACCAGAGGACAACCC
CCC-TTTGACTGTAATTTTCCTTTATCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCTGTTTGCTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC
AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATG----------
>LTR7d1_chr1_70588437_70593991_3046_ZNF534_ZNF90_KAP1_EncodeRepressed_NANOG_GRO3of7_7down____chr1_7058843770588793____1356
-GTCAGGCCTCTGAGCCCAAG-----------------------CTGAGCCATCATA-CA
CCTGTGAC---------------------------------------------CTGCATA
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACAT----------------------------------------------------
------------------------------------------------------------
--T---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACT-C-TGCCCGCCAGAGAACAACCC
CGC-TTTGACTGTAATTTTCCTTTATCTACCCA-AATCCTATAA-----------AACA-
GCCCCACCC-T-T-ATCTCCCTTTGCTGACTCTCTTTTTGGACTCAGCCCACCTGCACCC
AGATG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTAACATGGCCGCGCATGA---------
>LTR7d1_chrX_138258661_138264347_3027_ZNF534_k4me3_EncodeTxn_NANOG_GRO1of7_7down____chrX_138258661138259059____1398
-GTCAGACCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------ATGCACA
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTGCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAATGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----C----------TCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACT-C-TGCCCGCCAGAGAAAAACCC
CCC-TTTGACTGTAATTTTCCTTTATCTACCCA-AATCCTATAA-----------AATG-
GCCCCACCC-T-T-ATCTCCCTTCGTTGACTCTCTTTTTGGACTCAGCCCACCTGCACCC
AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACACGCATGA---------
>LTR7d1_chr3_164342181_164347849_3077_ZNF90_KAP1_EncodeTxn_GRO7of7_C_7down___chr3_164347441164347849___1408
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCTTCATATCT
CCTGTGAC---------------------------------------------TTGCACG
TGCACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------TC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACT-C-TGCCCGCCAGAGAACAACCC
CCC-TTTGACTGTAATTTTTCTTTATCTACCCA-AATCCTATAA-----------AATG-
GCCCCACCC-T-T-ACCTCCCTTCACTGACTCTCTTTTTGGACTCATCCCGCCTGCACCC
AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGGCGCGCATG----------
>LTR7d1_chr19_20068808_20069207_h3k27ac_weakenh_SOLO_NANOG_SOX2_C_7down___chr19_2006880820069207___1398
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTG----
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------TGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCCATTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCACCCTGTCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACT-C-TGCCCACCAGAGAACAACCC
CCC-TTTGACTGTAATTT------ATCTACCCA-AATCCTATAA-----------AATG-
TCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTTGGACTCAGCCTGCCTGTACCC
AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGACTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATG----------
>LTR7d1_chr2_98192227_98192634_EncodeRepressed_SOLO_C_7down___chr2_9819222798192634___1407
TGTCAGGCCTCTGGGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTACACA
TACACATCCAGA------------------------------------------------
-----------------------------TGGCT--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
GTT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTTCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACT-C-TGCCCGCCAGAGAACAACCC
C-C-TTTGACTGTAATTTTCCTTTATCTACCCA-AATCCTATAA-----------AACG-
CCCCCAACC-T-T-ATCTCCCTTTGCTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC
AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCACATG----------
>LTR7d1_chr1_147833885_147834292_enh_SOLO_NANOG_7down____chr1_147833885147834292____1407
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACA
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCCGG--------------
----CTCATCCTAGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACT-C-TGCCCGCCAGAGAACAACCC
C-C-TTTGACTGTAATTTTCCTTTATCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTTGCTGACTCTCTTTTCAGACTCAGCCCGCTTGCACCC
AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--AGTGGTCT
CTTCACACGGACACACATGA---------
>LTR7d1_chr1_248335766_248341106_2501_1_EncodeRepressed_GRO5of7_GRO6of7_GRO7of7_C_7down___chr1_248340699248341106___1407
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTCAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACAGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACT-C-TGCCCGCCAGAGAACAACCC
C-C-TTTGACTGTAATTTTCCTTTATCTACCCA-AATCCTATAC-----------AACG-
ACCCCACCC-T-T-ATCTCCCTTTGCTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC
AGGTG-------A--TTAAAAGCTTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCAAACGGATGCACAT-----------
>LTR7d1_chr11_122824428_122832822_2198_ZNF534_ZNF90_KAP1_EncodeTxn_7down____chr11_122824428122824830____1402
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGACATCATATCC
CCTGTG--------------------------------------------------CACA
TACATACCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGGT-----------------------
---GATATTCCACTACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACT-C-TGCCCACCAGAGAACAACCC
C-C-TTTGACTGTAATTTTCCTTTATCTACCCA-AATCCTATAA-----------AACG-
ACCCCACCC-T-T-ATCTCCCTTCGCTGACTTTCTTTTCAGACTCAGCCCACCTGCACCC
AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--AGTGGTCT
CTTCAAACAGACGCGCATGA---------
>LTR7d1_chr3_191895384_191901110_4259_ZNF534_ZNF90_KAP1_EncodeRepressed_NANOG_GRO3of7_C_7down___chr3_191900702191901110___1408
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CGGCACA
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------AGTTTCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----TTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CCCATCCTGGCTCAA--AAGCTCTCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACTTTGTG--------------
---------------------------AC-CCCCACT-C-TGCCCGCCAGAGAACAACCC
C-C-TTTGTCTGTAATTTTCTTTTATCTACCCA-AATCCTATAA-----------AATG-
ACCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCAGACTCAGCCTCCCTGCACCC
AGGTG-------A--TCAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACACGCATG----------
>LTR7d1_chr4_1180628411811938_3147_ZNF534_ZNF90_KAP1_EncodeTxn_NANOG_GRO2of7__chr4_1180628411806743____1408
-GTCAGGCCTCTGAGCCTAAG-----------------------CTAAGCCTTCATATCC
CCTGTGAC---------------------------------------------CTGCATG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCAGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCGACT-C-TGCCCGCCAGAGAGCAAACC
CCC-TTTGACTGCAATTCTCCTTTATCTACCCA-AATCCTATAA-----------AACG-
GCCCCATCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC
AGGTG-------A--TTAAAAGTTTTATTGCTCACACAAAGCCTG--TTT--GGTAGTCT
CTTCACACTGACGCGCATGA---------
>LTR7d1_chrX_16179202_16184434_2335_ZNF534_k4me3_EncodeRepressed_NANOG_C_7down___chrX_1618402916184434___1405
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
TCTGTGAC---------------------------------------------CTGCACG
TACATATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ACT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTTCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACT-C-TGCCAGCCAGAGAAC---CC
CCC-TTTGACTGTAATTTTCCTTTATCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTACACCC
AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--AGTAGTCT
CCTCACACTGACGCGCATG----------
>LTR7d1_chr1_53449415_53449824_h3k27ac_enh_SOLO_NANOG_TCF4_7down____chr1_5344941553449824____1408
-GTCAGGTCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ACT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACT-C-TGCCCGCCAGAGAACAACCC
CCC-TTTGACTGTAATTTTCCTTTATCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GTTGGTCT
CTTCACACGGATGCGCATGA---------
>LTR7d1_chr3_161721915_161727777_3273_ZNF534_ZNF90_KAP1_EncodeTxn_NANOG_GRO7of7_C_7down___chr3_161727371161727777___1406
TGTGAGGCCTCTGAGCCCAAG-----------------------TTAAGCCATCATGTCC
CCCGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTTC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----TTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACT-C-TGCCCGCCAGAGAACAACC-
CCC-TTTGACTGTAATTTTCCTTTATCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTCACTGACTCTCTTTTTGGACTCAGCCTG-CTGCACCC
AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTTTTCT
CTTCACACGGATGCGCATG----------
>LTR7d1_chr8_63888201_63888569_h3k27ac_EncodeRepressed_SOLO_NANOG_7down____chr8_6388820163888569____1368
-GTCAGGCCTCTGAGCCCAAG-----------------------GTAAGCCATCATATCC
CTTGTGAC---------------------------------------------CTGCACA
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTTCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACT-C-TGCCTGCCAGAGAACAACCC
CCC-TTTGACTGTAATTTTCCTTTATCTACCCA-AGTCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTCACTGACTCTCTTTTCAGACTCAGCCGGCCTGCACCC
AGGTG-------A--TTAAAAGCTTTATTTCTCACA------------------------
-----------------------------
>LTR7d1_chr13_87186449_87192108_2355_ZNF534_ZNF90_KAP1_k4me3_EncodeTxn_FOXP1_NANOG_GRO3of7_C_7down___chr13_8719170087192108___1408
TGTCAGGCCTCTGAGCCCAAG-----------------------GTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACA
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTTCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACT-C-TGCCTGCCAGAGAACAACCC
CCC-TTTGACTGTAATTTTCCTTTATCTACCCA-AGTCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCAGCCTGCACCC
AGGTG-------A--TTAAAAGCTTTATTTCTCACACAAAGACTG--TTT--GGTGGTCT
CTTTACACAGACGTGCATG----------
>LTR7d1_chr3_170817615_170823761_5821_ZNF534_KAP1_EncodeRepressed_C_7down___chr3_170823356170823761___1405
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACACCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAGAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ACT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAG--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACT-C-TGCCTGCCAGAGAAC---CC
CCA-TTTGACTGTAATTTTCCTTTATCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCTCTGACTCTCTTTTCAGACTCAGCCAGCCTGCACCC
AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGATTT
CTTCACACAGACTCACATG----------
>LTR7d1_chr3_192995645_193001388_4652_ZNF534_ZNF90_KAP1_EncodeTxn_NANOG_7down____chr3_192995645192996056____1408
-GTCAGGCTTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCATG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACT-C-TGCCCGCCAGAGAACAACCC
CCC-TTTGACTGTAATTTTCCTTTATCTACCCA-AATCCTGTAA-----------AATG-
GCCCCACTC-T-T-ATCTCCCTTCACTGACTCTCTTTTCAGACTCAGCCTGCCTGCACCT
GGGTG-------A--TTAAAAGGTTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACATGCATGA---------
>LTR7d1_chr8_48261721_48262129_weakenh_SOLO_NANOG_C_7down___chr8_4826172148262129___1407
TGTCA-GCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCATG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCT--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCGTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACCTTGTG--------------
---------------------------AC-CCCCACT-C-TGCCCACCAGAGAACAACTC
CCC-TTTGACTGTAATTTTCCTTTATCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCTGCCTGTGCCC
AGGCA-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGATCT
CTTCACACGGACATGCATG----------
>LTR7d1_chrX_6272220_6277943_4663_ZNF534_KAP1_EncodeRepressed_GRO5of7_GRO6of7_GRO7of7_C_7down___chrX_62775356277943___1407
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ACT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACCTTGTG--------------
---------------------------AC-CCCCACT-C-TGACCGACAGAGAACAAC-C
CCC-TTTGACTGTAATTTTCCTTTATCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTA--TTT--GGTGGTCT
CTTCACACGGACGCACATG----------
>LTR7d1_chr18_29000350_29000757_EncodeTxn_SOLO_NANOG_SMAD11_C_7down___chr18_2900035029000757___1406
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTTCACG
TACA-ATCCAGA------------------------------------------------
-----------------------------TGGCT--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CCCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACCTTGTG--------------
---------------------------AC-CCCCACT-C-TGCCCACCAGAGAACAAA-C
CCC-TTTGACTGTAATTTTCCTTTATCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGCACATG----------
>LTR7d1_chr10_90384552_90384961_EncodeRepressed_SOLO_NANOG_TCF4_7down____chr10_9038455290384961____1408
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCATG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTTCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCACAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACCTTGTG--------------
---------------------------AC-CCCCACC-C-TGCCCACCAGAGAACAAC-C
CCC-TTTGACTGTAATTTTCCTTTATCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC
AGGTG-------A--TTAAAAGCTTTATTGCTCACACTAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGCACATGA---------
>LTR7d1_chr1_79638762_79644487_4503_ZNF534_EncodeTxn_GRO4of7_C_7down___chr1_7964408379644487___1403
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCAT-TCC
CCTGTGAC---------------------------------------------CTACACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAC-----------------------
---CACAGTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTT---CTGG--------------
----CTCATTCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACCTTGTG--------------
---------------------------AC-CCCCACT-C-TGCCCACCAGAGAACAAC-C
CCC-TTTGACTGTATTTTTCCTTTATCTACCCA-AATCCTATAA-----------AATG-
GCCCCACTT-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTG-------A--TTAAAAGCTTTATTGCTCATACAAAGCTTA--TTT--GGTGGTCT
CTTCACACAGACGCGCATG----------
>LTR7d1_chr5_110530936110535513_2344_1_EncodeTxn_GRO2of7__chr5_110530936110531331____1395
-GTCAGGCCTCTGAGCCTAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCCCG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCAGCCTTAACTGAT-----------------------
---GACATTCCACCACAAA---AGTGAAAATGACCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCCTGTG--------------
---------------------------AC-CCCCACTTC-TGCCCGCCAGAGAACAACCC
CCC-T----------TTTTCCTTTACCTACCCA-AATCCTATAA-----------AATG-
GCCCCACCC-C---ATCTCCCTTCACTGACTCTCTTTTTAGACTCAGCCCGCCTGCACCC
AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--AGTAGTCT
CTTCACACGGACACACATGA---------
>LTR7d1_chr2_208893768_208905467_2916_ZNF534_EncodeRepressed_GRO5of7_GRO6of7_GRO7of7_7down____chr2_208893768208894167____1399
-GTCAGGCCTCTGAGCCTAAG-----------------------CTAAGCCATAATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCT--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCAACACAAAAGAAGTGAAAATGGCTTGTTCC-------------------
------------TA------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GCGAAATTTCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAA----CACCTTGGG--------------
---------------------------AC-CCCTACTCC-TGCCCGCCAGACCACAACCC
CCC-T----------TTTTCCTTTACATACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCACTGACTCTCTTTTCAGACTCAGCCAGCCTGCACCC
AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAACCTG--TTT--GGTGGTCT
CTTCACACAGACGCGCATGA---------
>LTR7d1_chr11_102904000_102909908_3326_ZNF534_ZNF90_KAP1_EncodeRepressed_GRO4of7_C_7down___chr11_102909501102909908___1407
TGTCAGGCCTCTAAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACAACCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATCATCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------CTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAACTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TACCCGCCAGAGAACAACCC
CTT-T--GACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCT-C-T-ATCTCCTTTCACTGACTCTCTTTTCAGACTCAGCCCACCTGCACCC
AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAAACGTGCGTG----------
>LTR7d1_chr6_148639772_148645508_4451_ZNF534_KAP1_EncodeRepressed_NANOG_7down____chr6_148639772148640179____1406
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCCGG--------------
----CTCATCCCGGCTCAG--AAGATCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAACCC
CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG-
GCCCCAC-C-C-C-ATCTCTCTTCACTGACTCTTTTT--GGACTCAGCCCGCCTGCACCC
AGGTG-------A--TTAAAAGCTTTATTGCTCACATAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACGTGCATGA---------
>LTR7d2_chr6_62585932_62591724_4658_ZNF534_KAP1_EncodeTxn_NANOG_7down____chr6_6258593262586380____1397
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCT--GAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGTG--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AGGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACCTTGTC--------------
---------------------------AC-CCCCATTCC-TGCCCACCAGAGAACAACCC
CCC-TT----------TTTCCTTTACCTACCCA-AATCCTACAA-----------AACG-
GCCCCACAC-C-T-ATCTCTCTTCACTGACTCTCTTTTGGGACTCAGCCCGCCTGCACCC
AGGTG-------A--TTAAAAGCTTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGATGCGTGTGA---------
>LTR7d1_chr4_133263579_133268907_3428_1_k27ac_EncodeTxn_C_7down___chr4_133268509133268907___1398
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCACATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAGCTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTTCTCA--------------
----CTCATCCTGGCTTAA--AAGCTCACCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACATTGTG--------------
---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAACCC
CCC-T----------TTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCCCTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC
ATGTG-------A--TTAAAAG-TTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACGCGCATG----------
>LTR7d1_chr21_16631053_16631452_EncodeRepressed_SOLO_7down____chr21_1663105316631452____1399
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CAGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAATTAAAATGGCCTGTTCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCAAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CATCTTGTG--------------
---------------------------AC-CCCCACTCT-TGCCTGCCAGAGAACAACCC
CAC-T----------TTTTCCTTTACCTACCCA-AATCCTATAA-----------AACA-
GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC
AGGTG-------A--TTAAAATCTTTATTGCTCACACAAAGCCTG--TTT--GGTGATCT
CTTCACAGGGATGCGCATGA---------
>LTR7d1_chr3_106922769_106928372_3371_ZNF534_KAP1_EncodeTxn_C_7down___chr3_106927983106928372___1389
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACA
TTCACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCTTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCCTCTCCTGG--------------
----CTC----------AA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCTACTCC-TGCCTGCCAGAGAACAACCC
CCC-T----------TTTTCCTTTTCCTACCCA-AATCCTATAA-----------AACA-
GCCCCACCC-C-T-ATCTCACTTTGCTGATTCTCTTTTTGGACTCAGCCCGCCTGCACCC
AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAATCCTG--TTT--GGTGGTCT
CTTCACAGGGACGCGCATG----------
>LTR7d1_chr2_146539893_146540292_h3k27ac_enh_SOLO_NANOG_44108_SMAD11_TCF4_7down____chr2_146539893146540292____1398
-GTCAGGCCTCTGAGCCCAAG-----------------------CTACGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGG------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAATGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGGC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-GCCCACTCC-TGCCTGCCAGAGAACAACCC
CCC-T----------TTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C---ATCTCCCTTTGCTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC
AGGTG-------A--TTAAAAGCTTTATTGTTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGCGCATGA---------
>LTR7d1_chr11_25579395_25579817_enh_SOLO_NANOG_SMAD11_C_7down___chr11_2557939525579817___1396
TGTCAGACCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
C--GTGAT---------------------------------------------TTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAATGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----TTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAACCC
CCC-T----------TTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C---ATCTCCCTTCGCTGACTCTCTTTTCAGACTCAGCCCGCCTGTACGC
AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACACGCATG----------
>LTR7d1_chr3_20976906_20977305_EncodeTxn_SOLO_NANOG_SMAD11_TCF4_C_7down___chr3_2097690620977305___1397
TGTCAGGCCTCTGGGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGA-GAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--TTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACTTTGTG--------------
---------------------------AC-CCCCATTCC-TGCCCACCAGAGAACAACCC
CCC-T----------TTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C---ATCTCCCTTGGCTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC
AGGTG-------A--TCAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGCTCGCGCATG----------
>LTR7d1_chr3_109176402_109176803_EncodeTxn_SOLO_C_7down___chr3_109176402109176803___1399
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCAGG
TAAACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTTCTGCCTTAACTGAT-----------------------
---GACATTCCGCCACAAAAGAAGTGAAAATGGCCTATTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCATTCC-TGCCCCCCAGAGAACAACCC
CCC-T----------TTTTCCTTTACCTACCCA-AATCCTATAA-----------AACA-
GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTG--GGTGGTCT
CTTCACACGGACGCACAT-A---------
>LTR7d1_chr13_110486602_110486998_enh_SOLO_NANOG_C_7down___chr13_110486602110486998___1394
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCAATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTTCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCAGCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAACCC
CCC-T----------TTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCAGACTCAGCCTGCCTGCACCC
AGGTG-------A--TTAACAGCTTGATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
TTTCACACGGACGC---------------
>LTR7d1_chr4_6528607_6529011_weakenh_SOLO_7down____chr4_65286076529011____1404
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGTCATCATATC-
CCTGTGAC---------------------------------------------CTGCACA
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAACCC
-CC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTTGCTGACTGTCTTTTCAGACTCAGCCGGCCTGCAACC
AGGTG-------A--TTAAAAGCTTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCA------------
>LTR7d1_chr12_60951268_60957619_3267_ZNF534_EncodeTxn_GRO5of7_GRO6of7_GRO7of7_C_7down___chr12_6095721660957619___1403
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAACTATCATATCC
CCTGTGAC---------------------------------------------GTGCACA
TACACATCCAGA------------------------------------------------
-----------------------------CGGCC--------------------------
------------------AGTGCCTGCCTTAATTGAT-----------------------
---GACATTCCACCACAAAAGAAATGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCCTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCATGTG--------------
---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAACCC
--C-TTTGACT--AATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACA-
GCCCCACCC-C-T-ATCTCCCTCCACTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC
AGGTG-------A--TTAAAAGCTTTATTGCTCACAC-AAGTCTG--TTT--GGTGGTCT
CTTCACATGGATGTGCATG----------
>LTR7d1_chr11_133626775_133632692_3454_ZNF534_EncodeTxn_GRO4of7_7down____chr11_133626775133627185____1407
-ATCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCA-AAAAGAAATGAAAATGGCCTGTTCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GGG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCACTAGAGAGAAACCC
--C-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACA-
TCCCCACTC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTG-------A--TTAAAAGCTTTATTGTTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGTGCATGA---------
>LTR7d1_chr3_152597016_152603153_2326_ZNF534_EncodeTxn_NANOG_GRO1of7_7down____chr3_152597016152597424____1406
-GTCAGGCCTCTGAGCCTAAG-----------------------CTAAGCCATCATATCC
CCCGTAAC---------------------------------------------CTGCATG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------GC----------TTAA----TGGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAACCC
--C-TTTGACTATAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG-
GCCCCAACC-C---ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTG-------A--TGAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGTGCATGA---------
>LTR7d2_chr11_116450269_116450679_EncodeRepressed_SOLO_NANOG_7down____chr11_116450269116450679____1410
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCCCG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACAATCCACCACAAAAGAAGTGAAAATGGCCCGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGC--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAAC-C
CCC-TTTGACTGTAATTTTCCTTTACCTATCCA-AATCTTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGATGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGATCT
CTTCACACGGACACGCATGA---------
>LTR7d2_chr7_124729157124734734_3295_ZNF534_KAP1_EncodeRepressed_NANOG_GRO2of7__chr7_124729157124729555____1398
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGTTATCATATCC
CTTGTGAC---------------------------------------------CTGCACA
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCC-----------------
-----------TGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAAC--C-C
CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AATG-
GCCCCACCC-C-T-ATCTCTCTTCACTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACACGCATGA---------
>LTR7d2_chr3_911603_912013_EncodeTxn_SOLO_NANOG_C_7down___chr3_911603912013___1409
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACA
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTCCC-------------------
------------TG------------------CC----------TTAA----CCGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAA----CACCTTGTG--------------
---------------------------AC-CCCCACCC--TGCCCGCCAGAGAACAACCC
CCC-TTTGACTGTAATTTTCCTTTACCTTCCCA-AATCCTATTA-----------AA-G-
GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCCGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATG----------
>LTR7d2_chr15_46680150_46680560_h3k27ac_EncodeTxn_SOLO_NANOG_7down____chr15_4668015046680560____1410
-GTCAGGCCTCTGAGACCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAG---------------------------------------------CTGCACA
TACACATCCAGA------------------------------------------------
-----------------------------TAGCC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCCA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTC--TGCCCGCCAGAGAACAACTC
CCC-TTTGACTGTAACTTTCCTTTATCTACCCA-AACCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTCACTCACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACCCAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGAGTG----------
>LTR7d2_chr6_120924825120930857_2237_ZNF534_KAP1_EncodeTxn_GRO2of7__chr6_120924825120925234____1409
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACA
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------AATTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ACT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACCTGGCG--------------
---------------------------AC-TCTCACTC--TGCCTGCCAGAGAAAAACTC
CCC-TTTGACTGTAATTTTCCTTTATCTACCCA-AATCTTATAA-----------AATG-
GCCCCACCC-T-T-ATCTCCCTCCCCTGACTTTCTTTTCAGACTCAGCCCACCTGCACC-
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACGTGCATG----------
>LTR7d2_chr2_207017218_207023284_5821_ZNF534_KAP1_EncodeTxn_GRO3of7_7down____chr2_207017218207017627____1409
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
ACTGTGAC---------------------------------------------CTGCACA
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ACT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTC-TGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCCTGTG--------------
---------------------------AC-CCCCACTC--TGCCCGCCAGAGAACAACCC
CCC-GTTGACTGTAATTTTCCTTTATCTACCCA-AATCTTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAACCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATG----------
>LTR7d2_chr3_146362086_146367972_3131_ZNF534_ZNF90_KAP1_EncodeTxn_7down____chr3_146362086146362495____1409
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATGTCC
CCTGTGAC---------------------------------------------CTGCACA
TACACATCCAGA------------------------------------------------
-----------------------------TGTCT--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GATATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCAT-CTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGGG--------------
---------------------------AC-CCCCACTC--TGCCCACCAGAGAACAACCC
CCC-TTTGACTGTAATTTTCCTTTATCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-G-T-ATCTCCCTTCTCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACACACATG----------
>LTR7d2_chrX_6308003_6308363_EncodeRepressed_SOLO_7down____chrX_63080036308363____1359
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCATG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCT-------------------------------
------------------------------------------------------------
---------------------------------------------TAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTTTCCTGG--------------
----CTCATCTGGTCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACTTTGTG--------------
---------------------------AC-CCCCACTC--TGCCCGCCAGAGAACAACTC
CCC-TTTGACTGTAATTTTCCTTTATCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTCCGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATG----------
>LTR7d2_chr20_45759334_45765245_1461_ZNF534_ZNF90_KAP1_EncodeRepressed_NANOG_GRO1of7_7down____chr20_4575933445759751____1410
-GTCAGACCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACA
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTTTCCTGG--------------
----CTCATCCTGTCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCACACTC--TGCCCTCCAGAGAACAACTC
CCC-TTTGACTGTAATTTTCCTTTATCTACCCA-AATCCCATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTCACTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCACGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATG----------
>LTR7d2_chr1_150641376_150641787_h3k27ac_enh_SOLO_NANOG_SMAD11_SOX2_7down____chr1_150641376150641787____1410
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACA
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTTTCCTGG--------------
----CTCATCCTGTCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCCTGTG--------------
---------------------------AC-CCCCACTC--TGTCCGCCAGAGAACAACAC
CCC-TTTGACTGTAATTTTCCTTTATCTACCCA-AATCCTATAA-----------AACA-
GCCGCACCC-T-T-ATCTTCCTTCGCTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGCACGAGCATG----------
>LTR7d2_chrX_131712025_131717764_4499_ZNF534_KAP1_EncodeTxn_GRO4of7_7down____chrX_131712025131712446____1410
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTTTCTTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCGACTC--TGCCCGCCAGAGAACAACTC
CCC-TTTGACTATAATTTTCCTTTATCTACCCA-AATCCTATAA-----------AACA-
GCCCCACCT-T-T-ATCTCCCTTCCCTGACTCTCTTTTCAGACTCAGCCCGCCTGCGCCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--AGTGGTCT
CTTCACACGGACGTGCATG----------
>LTR7d2_chr17_76605988_76611511_3491_ZNF534_ZNF90_KAP1_EncodeTxn_NANOG_GRO5of7_GRO6of7_GRO7of7_C_7down___chr17_7661108576611511___1408
TGTCAGGCCTCTGAGCTGAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACGTTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------CG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTGC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCC-GCTC--TGCCCGCCAGAGAACAA-AC
CCC-TTTGACTGTAATTTTCCTTTATCCACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACACAGCCTG--TTT--GGTGGTTT
CTTCACACGGCCGCGCATG----------
>LTR7d2_chr4_68405894_68406295_h3k4me3_TSS_SOLO_FOXP1_MED1_NANOG_44108_SMAD11_SOX2_TCF4_7down____chr4_6840589468406295____1400
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCGTATCC
CCTGTGAC---------------------------------------------TTGCACA
TACACATCCCGG------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTTC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTT---------------------
-------ATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTC--TGCCCGCCAGCGAACAACCC
CCC-TTTGACTGTAATTTTCCTTTATCTACCCA-AATCCTATAA-----------AACG-
GTCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGATGCACATG----------
>LTR7d2_chr13_61088458_61094439_4519_1_k4me3_EncodeTxn_NANOG_GRO3of7_7down____chr13_6108845861088865____1407
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTCCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTTCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AG-CCCCACTC--TGCCCGCCAGAGAACAAC-C
CCC-TTTGACTGTAATTTTCCTTTATCTACCCA-AATCCTATAA-----------AACA-
GCCCCACCC-T-T-ATCTCCCTTTGCTGACT--CTTTTCAGACTCAGCCCGCCTGCACTC
AGGTGA-----AA--TAAACAGCCTTGTGGCTCACACAAAGCCTA--TTT--GGTGGTCT
CTTCACACGGATGCGCATG----------
>LTR7d2_chr6_12667170_12673014_3210_ZNF534_ZNF90_KAP1_EncodeTxn_wangmod_GRO5of7_GRO6of7_GRO7of7_7down____chr6_1266717012667579____1409
-GTCAGGTCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAG
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCCGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------A--CCCCACTC--TGCCCACCAGAGAACAACCC
CCC-TTTGACTGTCATTTTCCTTTATCTACCCA-AATCCTATAA-----------AACA-
GCCCCACCC-T-T-ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCGTGTTCCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGTATG----------
>LTR7d2_chr1_212908311_212908714_h3k27ac_enh_SOLO_NANOG_C_7down___chr1_212908311212908714___1403
-------CCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCTTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTC--TGCCCGCCAGAGAACAACCC
CCC-TTTGACTGTAATTTTCCTTTATCTACCCA-AATCCTATAA-----------AATG-
GCCCCACCC-T-T-ATCTCCTTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACGC
AGGTGA-----AA--TAAACCACCTTGTTGCTCATACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATG----------
>LTR7d2_chr14_87234691_87240791_5947_ZNF534_k4me3_enh_FOXP1_NANOG_C_7down___chr14_8724038487240791___1407
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACA
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAAAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGACGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTC--TGCCTGCCAGAGAACAACT-
CCC-TTTGACTGTAGTTTTCCTTTATCTACCC--AATCCTATAA-----------AACG-
GCTCCACCC-T-T-ATCTCCCTTTGCTGACTCTCTTTTTGGACTCAGCCTGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGCTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCAC----------ATG----------
>LTR7d2_chr2_208215925_208221935_4314_ZNF534_ZNF90_KAP1_EncodeRepressed_C_7down___chr2_208221531208221935___1397
-----GGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCATG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCATAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CATGTTGTG--------------
---------------------------AC-CCCCACTC--TGCCTGCCAGAGAACAACC-
CCC-TTTGACTGTAATTTTCCTTTATCTACCCA-AATCCTATAA-----------AACG-
GCACCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACAC-------CATG----------
>LTR7d2_chr8_18393944_18394351_SOLO_C_7down___chr8_1839394418394351___1407
TGTCAGGCCTCTGAGCCTAAG-----------------------CTAAGCCATCATATCC
C--GTGAC---------------------------------------------CTGCATG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTA-CTGAT-----------------------
---GACATTCCACCACAAAAGATGGGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ACT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--TAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTC--TGCCTGCCAGAGAACAACCC
CCC-TTTGACTGTACTTTTCTTTTATCTATCCA-AATCCTATAA-----------AATG-
GCCCCACCC-T-T-ATCTCCCTTCACTGACTCTCTTTTAGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAGAGTCTG--TTT--GGTGGTCT
CTTCACACGGATGTGCATG----------
>LTR7d2_chr5_162275428_162281160_4597_ZNF534_EncodeTxn_NANOG_GRO4of7_C_7down___chr5_162280751162281160___1407
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCAGG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCT--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAA-AGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ACT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTGC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTC--CCCCT-CCAGAGAACAA-CC
CCC-TTTGACTGTAATTTTCCTTTATCCACCCA-AATCCTATAA-----------AATG-
GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACGCGCATG----------
>LTR7d2_chr3_173353080_173353490_EncodeRepressed_SOLO_NANOG_C_7down___chr3_173353080173353490___1410
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCAGG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGATAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTCA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----TTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTC--TCCCTGCCAGAGAACAACCC
CCC-TTTGACTGTAATTTTCCTTTATCTACCCA-AATCCTATAA-----------AATG-
GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCAGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACACACATG----------
>LTR7d2_chr3_145551229_145556922_4420_ZNF534_k27ac_EncodeTxn_NANOG_GRO7of7_C_7down___chr3_145556513145556922___1409
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAAA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGAGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTC--TGCTTGCCAGAGAACAACCC
CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCAACC-C---ATCTCCCTTCGCTGACTCTCTTTTCAGACTCAGCCTGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGGTGCTCACACAAAGTCTG--TTT--GGTGGTCT
CTTCCCACAGATGCTCATG----------
>LTR7d2_chr4_134677937_134683552_3284_ZNF534_KAP1_EncodeTxn_NANOG_C_7down___chr4_134683146134683552___1405
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCATG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGCAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CATCTTGTG--------------
---------------------------AC-CCCCACTC--TGCCCGCCAGAGAACAACCC
CCC-TTTG----TAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C---ATCTCCCTTCCCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACGTGTATG----------
>LTR7d2_chr12_60979274_60979684_h3k27ac_EncodeTxn_SOLO_C_7down___chr12_6097927460979684___1410
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAACCATCATATCC
CCTGTGGC---------------------------------------------CTGCATG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATG---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTC--TGCCCACCAGAGAACAACCC
CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACA-
GCCCCACCC-C-T-ATCTCCCTTCTCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
CGGTGA-----AA--TAAACAGCTATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGTGCATG----------
>LTR7d2_chr5_170762081170767864_3291_ZNF534_ZNF90_KAP1_k4me3_weakenh_GRO2of7__chr5_170767456170767864___1408
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCACCATATCC
CCTGTGGC---------------------------------------------CTGCATG
TACACATCCATA------------------------------------------------
-----------------------------TGGCT--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTATTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATC---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTAGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTC--TGCCCGTCAGAGAACAACCC
CCC-TTTGACTGTAATTTTCCATTACCTACCCA-AATCCTATAA-----------AATG-
GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCT--TTTCAGACGCAGCCTGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACATGCATG----------
>LTR7d2_chr6_16259012_16264893_3426_ZNF534_k4me3_EncodeRepressed_NANOG_SMAD11_wangmod_chimeric_C_7down___chr6_1626448216264893___1410
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCATG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTC--TGCCCACCAGAGAACAACCC
CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCACATG----------
>LTR7d2_chr1_225810575_225810980_h3k4me3_TSS_SOLO_NANOG_TCF4_C_7down___chr1_225810575225810980___1402
TGTCAGGCCTCTGAGCCGAAG-----------------------CTAAGCCATCATATCC
CCTGTGGC---------------------------------------------CTGCACC
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GTCATTCCACCACAAAA---GTGAAAATGACCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTC--TGCCCGCCAGAGA---ACCC
CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTGGCTGACTCT--TTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATG----------
>LTR7d2_chr3_21189020_21194203_3120_1_GRO4of7_C_7down___chr3_2119380521194203___1398
--TCAGGCCTCTGAGCCCCAG-----------------------CTAAGCCATGATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ACT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGTTCAA--AAGCTCCCCTGC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAC----CACCCTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAACCC
CCT-TTTTCCTT-----------TACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCGCTGACCCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCGTG--TTT--GGTGGTCT
CTTCACATGGATGCCCATG----------
>LTR7d2_chr3_191691054_191691474_enh_SOLO_NANOG_C_7down___chr3_191691054191691474___1411
TATCAGGCCTCTGAGTCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---GACGTTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACACC-TGCCCGCCAGAGAACAACCC
CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTCATAA-----------AACA-
GCCCCACCC-C-T-ATCACCCTTCATGGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGTTCACACAAAGCCTG--TTT--GGTGGTCT
CTTTACATGGATGCACATG----------
>LTR7d2_chrX_30448932_30454861_4785_ZNF534_KAP1_EncodeTxn_NANOG_GRO5of7_GRO6of7_GRO7of7_C_7down___chrX_3045440130454861___1409
TATCAGGCCTCTGAGCCTAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACA
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------AGTTCCTGCCTTAATTGAT-----------------------
---GACATTCCAGCACAAAAGAAGTGAAAATGGCCTGTTCT-------------------
------------TG------------------CC----------TTAA----TTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTTG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACCTTGTG--------------
---------------------------AC-CCCCACT-C-TGCCCGCCAGAGAACAA-CC
CCC-TTTGACTGTAATTTTCCTTTATCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-C-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGTGCATG----------
>LTR7d2_chr9_69823626_69824033_h3k27ac_enh_SOLO_NANOG_C_7down___chr9_6982362669824033___1406
TGTCAGGCCTCTGAGCCCAAA-----------------------CTAAGCCATCATATCG
CCGGTGAC---------------------------------------------CTGCACG
TACACATCTAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAG
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCACCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CATCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAAATC
CCA-TTTGACTGTAATTTTCCTTTATCTATCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTCACTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAGAGCCTG--TTT--GGTGGTCT
CTTCAAATGCACGT---------------
>LTR7d2_chrX_142423376_142428961_2994_KAP1_EncodeTxn_GRO4of7_C_7down___chrX_142428549142428961___1409
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CC-GTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------AGTTCTTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCTTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCCTGTG--------------
---------------------------AC-CCCCCCTCC-TGCCCGCCAGAGAACAACCC
CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCACACCC---C-ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTACTCACACAAAGCCTG--ATT--GGTGGTCT
CTTCACATGGATGTGCATG----------
>LTR7d2_chr3_39577832_39583618_3225_ZNF534_ZNF90_KAP1_EncodeTxn_NANOG_GRO3of7_C_7down___chr3_3958320939583618___1409
TGTTAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTAAC---------------------------------------------CTGCACA
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCA-CACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-TCCCACTC--TGCCAGCCAGAGAACAACCC
CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTGTAA-----------AACA-
GCCCCACCC-C---ATCTCCCTTCGCTGACTCTCTTTTCAGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAATAGCCATGTTGCTCACACAAAGGCTG--TTT--GGTGGTCT
CTTCACAGGGACGCGCATG----------
>LTR7d2_chr10_5470768_5477012_2822_ZNF534_ZNF90_KAP1_EncodeRepressed_GRO1of7_7down____chr10_54707685471177____1409
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCGTATCC
CCTGTGAC---------------------------------------------CTGCACA
TACA-ATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCATAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CT----------TTAA----CTGATGAC
ATA---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAAACC
CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACA-
GCCCCACCC-C---ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACATGCATGA---------
>LTR7d2_chr8_83504703_83510920_3282_ZNF534_EncodeRepressed_GRO4of7_C_7down___chr8_8351052283510920___1398
TGTCAGGCCTCTGAGCCCA-------------------------CTAAGCCATCATATCC
CCTGTTAC---------------------------------------------CTGCACA
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CCGATGAC
ACT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCCTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAACCC
CCC-TTT----------TTCCTTTACCTACCCA-AATCCTATAA-----------AACA-
GCCCCACCC-C---ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACTC
ATGTGA-----AA--TAAACAGAGTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGCACGTG----------
>LTR7d2_chr4_39274463933080_3145_1_k4me3_enh_NANOG_GRO2of7__chr4_39274463927854____1408
-GTCAGGCCTCTGAGCTCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCAGG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------CGTTCCTGCCTTAACTGAC-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGTCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AACCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TAGCTTGTG--------------
---------------------------AC-CCCCACTC--TGCCTGCCAGAGAACAACCC
TCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C---ATCTCCCTTTGCTGACCCTCTTTTCAGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTCGTCT
CTTCACACAGACACGCATG----------
>LTR7d2_chr7_6903791_6908992_4337_ZNF534_EncodeTxn_7down____chr7_69037916904200____1409
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATAGCC
CCTGTGAC---------------------------------------------CTGCATG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
GTT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--ATGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AACCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACCTTGTG--------------
---------------------------AC-ACCGACTC--TGCCTGCCAGAGAACAACCT
CCC-TTTGACTGTAATTTTCCTTTGCCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCT-TTCAGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTC--TTT--GGTGGTCT
CTTCACATGGACGCACATGA---------
>LTR7d2_chr3_130059102_130064974_3265_1_k4me3_EncodeTxn_NANOG_7down____chr3_130059102130059560____1407
-GTCAGGTCTCTGAGCCCAAG-----------------------ATAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACA
TACACATCCAGA------------------------------------------------
-----------------------------TGGCT--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCTCCACAAAAGAAGTGAAAATGGTCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATTCTGGCTCAA--AACCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACCTTCTG--------------
---------------------------AC-CCCCACTC--TGCCTGCCAGAGAACAAACC
CCC-TTTGACTGTAATTTTCCTTTGCCTACCCA-AATCCTATAA-----------AATG-
GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCT-TTCAGACCCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACA--AAGTCTG--TTT--GGTGGTCT
CTTCACATGGACGCACATGA---------
>LTR7d2_chr1_54897904_54903584_4518_ZNF534_ZNF90_KAP1_EncodeTxn_chimeric_GRO5of7_GRO6of7_GRO7of7_C_7down___chr1_5490318654903584___1398
TGTCAGGCCTCTGAGCCCAAG-----------------------CGAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACA
TACACTCCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCCGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACCTTGTG--------------
---------------------------AC-CCCCATTC--TGCCTGCCAGAG---AACCC
CCT-T----------TTTTCCTTTACCTACCCA-AATCCTATAA-----------AATG-
GCCCCAACC-T-T-ATCCCCTTTTGCTGACTTTCTTTTTGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAGAGCCTG--TTT--GGTGGTCT
CTTCACATGGACACACATG----------
>LTR7d2_chr2_192506079_192513182_2305_ZNF534_ZNF90_KAP1_EncodeTxn_NANOG_GRO5of7_GRO6of7_GRO7of7_7down____chr2_192506079192506490____1410
-GTCAGGCCTCTGAGCCTAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACA
TACATATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCTTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTGC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCTCCACC--TGCCTGCCAGAAAACAACCC
CCT-T----------TTTTCCTTTATCTACCTA-AATCCTATAA-----------AACA-
GCCCCACCC-T-T-ATCTCCCTTTGCTGATTCTCTTTTTGGACTCAGCCCAGCTGCACCC
ATGTGA-----AA--TAAACAGCCATATTGCTCACACAAAGCCTG--TTT--GGTAGTCT
CTTCACATGGACACACATGA---------
>LTR7d2_chr4_162709182_162714747_3186_ZNF534_ZNF90_KAP1_EncodeRepressed_NANOG_GRO3of7_7down____chr4_162709182162709583____1401
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGAC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTACACCACAAAAGAAGTGAAAATGGCCTGTTTC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCAAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TAACTTGTG--------------
---------------------------AT-CCCCACTC--TGCCTGCCAGAGAACAACCC
CCC-T----------TTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTTCCTTTGCTGACTCTCTTTTTGGACTTGGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGCACATGA---------
>LTR7d2_chr2_83788947_83794480_3229_KAP1_EncodeTxn_C_7down___chr2_8379407383794480___1406
TGTCAGGCCTCTGAGCTCAAG-----------------------CTAAGCCATCATA-CC
CCTGTGAC---------------------------------------------CTGCACG
TACGCATCGAGA------------------------------------------------
-----------------------------TGGCT--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAT
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAG---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACCTTGTG--------------
---------------------------AC-CCCCACTC--TGCCCGCCAGAGAACAACCC
CCT-TT-GACTGTAATTTTCCTTTACC-ACCCA-AATTCTATAA-----------AACG-
GCCCCACCC-C---ATTTCCCTTCGCTGACTCTCTTTTTGGACTCAGCTCGCCTGCACCG
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGCACATG----------
>LTR7d2_chr6_160286611_160292314_4763_ZNF534_KAP1_EncodeRepressed_NANOG_GRO4of7_C_7down___chr6_160291913160292314___1399
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCATG
TACACATCCAGA------------------------------------------------
-----------------------------TGACC--------------------------
------------------GGTTCCCGCCTTAACTGGT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CGGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACCTTGTG--------------
---------------------------AC-CCCCACTC--TGCCCGCCAGAGGACAACCC
CCC-TT----------TTTCCTTTACCTACGCA-AATCCTATAA-----------AATG-
GCCCCACCC-C---ATTTCTCTTTGCTGACTCTCTTTTCGGACGCAGGCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGCACATG----------
>LTR7d2_chr1_216008143216013869_3371_ZNF534_KAP1_EncodeRepressed_GRO2of7__chr1_216008143216008553____1409
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGCT-----------------------
---GACATTCCACCATGAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACCTTGTG--------------
---------------------------AC-CCCCACTC--TGGCCTCCAGAGAACAACCC
CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C---ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACTTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGCACATGA---------
>LTR7d2_chr3_8113870_8114282_weakenh_SOLO_NANOG_7down____chr3_81138708114282____1410
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCACATCC
CCTGTAAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGATC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------AC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AT-CCCCACTC--TGCCCGCCAGAGAACAACCC
ACC-CTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AATG-
GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACTC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCACATGA---------
>LTR7d2_chr3_8177031_8182716_4543_ZNF534_EncodeRepressed_7down____chr3_81770318177441____1410
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACCTTGTG--------------
---------------------------AC-CCCCACTC--TGCGTGCCAGAGAACAACCC
CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GATCCACCC-C-T-ATCTCCCTGCGCTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCAAACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACATGCATGA---------
>LTR7d2_chr19_52484546_52484943_h3k27ac_EncodeTxn_SOLO_NANOG_chimeric_7down____chr19_5248454652484943____1397
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCGTATAC
CCTGTGAC---------------------------------------------CTGCACA
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACCTTGTG--------------
---------------------------AC-CCCCACTC--TGCCCGCCAGAGAACAACCC
CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCACTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCCAACAAAGCCTG--TTT--GGTGGTCT
CTTCACA----------------------
>LTR7d2_chr4_9730530_9730938_EncodeTxn_SOLO_C_7down___chr4_97305309730938___1408
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCA
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGG------------------------------------------------
-----------------------------TGGCT--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCTCCACAAAAGAAATGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AACCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACCTTGTG--------------
---------------------------AC-CCCCACTC--TGCCCGCCAGAGAACAACGC
CCC-T----------TTTTCCCTTACCTACCCA-AATCCTATAA-----------AACG-
GTCCCACCC-C---ATCTCCCTTCACTGACTCTCTTT-CAGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGCACATG----------
>LTR7d2_chr11_67759685_67765364_4338_ZNF534_k27ac_EncodeTxn_NANOG_GRO4of7_7down____chr11_6775968567760095____1399
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CCGCACA
TACACATCCAGA------------------------------------------------
-----------------------------TGGCT--------------------------
------------------GGTTCCTGCCTTAAGTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AACCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACCTTGTG--------------
---------------------------AC-CCCCACTC--TGCCCACCAGAGAACAACTC
CCC-C----------TTTTCCTTTACCTACCCA-AATCCTATAA-----------AACA-
GCCCCACCC-C---ATCTCCCTTCACTGACTCTCTTTTCAGACTCAGCCCCCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACATAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGATGCGCATGA---------
>LTR7d2_chrY_21037652_21038057_SOLO_7down____chrY_2103765221038057____1399
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCT--------------------------
------------------GGTTCCTGCCTTAACCGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CT----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC---------T--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AATCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACCTTGTG--------------
---------------------------AC-CCCCACTC--TGTCTGCCAGAGAACAACCC
CCT-T----------TTATCCTTTACCTACCCA-AATCCTATAA-----------AATG-
GCCCCACCC-C---ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCTCCTGCACCC
AGGTGT-----AA--TAAACAGCCATGTTACTCACACAAAGCGTG--TTT--GGTGGTCT
CTTCACATGGACGCGCATGA---------
>LTR7d2_chr3_40560896_40566678_3079_ZNF534_ZNF90_KAP1_EncodeRepressed_7down____chr3_4056089640561296____1398
-GTCAGACTTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TCGCT--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------AT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCCAGCTCAA--AAGCTCCTCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACCTTGTG--------------
---------------------------AC-CCCCACTC--TGCCTGCCAGAGAACAACAC
CCC-T----------TTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C---ATCTCCCTTCACTGACTCT--TTTCGGACTCAGCCTGCCTGCACCC
AGGTGA-----AA--TAAACAGCCACGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGATGCGCATGA---------
>LTR7d2_chr17_70723947_70724348_EncodeRepressed_SOLO_C_7down___chr17_7072394770724348___1399
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------GTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TCGCG--------------------------
------------------GGTTCCTGCCTTAACTAAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ACT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------AAG----TACCTTGTG--------------
---------------------------AC-CCCCACTC--TGCCCGCCAGAGAACAAGCC
CCC-T----------TT-TCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C---ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCAGCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAGGTCTG--TTT--GGTGGTCT
CTTCACATGGACGCGCATG----------
>LTR7d2_chr6_16885985_16891647_4516_ZNF534_KAP1_EncodeTxn_NANOG_7down____chr6_1688598516886384____1399
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------CGGCC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTTC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ACT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACCTTGTG--------------
---------------------------AC-CCCCACTC--TGCCCACCACAGAACAACTC
CCC-T----------TTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C---ATCTCCCTTCACTGACTCT--TTTCGGACTCAGCCCGCCTGCACCC
AAGTGA-----AA--TAAGCAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACAAGGACGCGCATGA---------
>LTR7d2_chr2_82398275_82398685_EncodeRepressed_SOLO_NANOG_C_7down___chr2_8239827582398685___1400
TGTCAGGTCTCTGAGCCCGAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ACT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GCC--------TT--GTGACATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACCTTGTG--------------
---------------------------AC-CCCCACT---TGCCCACCAGAGAACAACTC
CCC-T----------TTCTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C---GTCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGCGCATG----------
>LTR7d2_chr18_64681731_64687323_3105_ZNF534_EncodeRepressed_7down____chr18_6468173164682131____1400
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAA---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTAAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCTCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACCTTGTG--------------
---------------------------AC-CCCGACTC--TGCCCGCCAGAGAACAACCC
CCC-T----------TTTTCCTTTACCTACCCA-AATCCTGTAA-----------AACG-
GCCCCACCC-C---ATCTCCCTTCACTGACTTTCTTTTTGGACTCAGCTCGCCCGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCTTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATGA---------
>LTR7d2_chr1_230018264_230018664_h3k27ac_weakenh_SOLO_NANOG_7down____chr1_230018264230018664____1399
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGAAGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACCTTGTG--------------
---------------------------AC-CCCCAC-C--TGCCCGCCAGAGAACAACCC
CCC-T----------TTTCCCTTTACCTTCCCA-AATCCTATAA-----------AACA-
GCCCCAGCC-C---ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AG--TAAACAGCCATGTTGCTCACACAAAGCCTC--TTT--GGTGGTCT
CTTCACACGGACACACATGA---------
>LTR7d2_chr3_54656900_54657297_EncodeTxn_SOLO_C_7down___chr3_5465690054657297___1394
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------CCGCG--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAA---GTGAAAATGGCCTATTCC-------------------
------------TG------------------CC----------TTAA----CTGAAGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACCCTGTG--------------
---------------------------AC-CCCCACTC--TGCCCGCCAGAGAACAACCC
CCC-T----------TTT-CCTTTACCTACCCA-AATCCTATAA-----------AACA-
GCCCCACCC-C---ATCTCCCTTGGCTGAC--TCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTTT
CTTCACACGGACGCGCATG----------
>LTR7d2_chr5_101315240_101320597_2892_ZNF534_EncodeRepressed_7down____chr5_101315240101315641____1400
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATTC
CCTGTGAC---------------------------------------------CTGGACA
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GATATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCCCCCCCAT---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------GAG----TACCTTGTG--------------
---------------------------AC-CCCCACTC--TGCCCGCCAGAGAACAACCC
CCC-T----------TTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C---ATCTCTCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACGCGCATGA---------
>LTR7d2_chr2_58314169_58319388_2025_ZNF534_KAP1_EncodeRepressed_GRO3of7_7down____chr2_5831416958314565____1387
-GTCAGGCCTCTGAGCCCAAG-----------------------GTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTAGACA
TACACATCCAGA------------------------------------------------
-----------------------------TCGCC--------------------------
-------------------------------ACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ACT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACCTTGTG--------------
---------------------------AC-CCCCACTC--TGCCCACCAGAGAACAACAC
CCC-T----------TTTTCCTTTACCTACCCA-AATCCTATAA-----------AATG-
GCCCCACCC-C---ATCTCCCTTCGCTGATTCTCTTTTCGGACTCAGTCTGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTC--GGTGGTCT
CTTCACACAGACGCGCATGA---------
>LTR7d2_chr6_130192311_130198222_4778_ZNF534_ZNF90_KAP1_EncodeTxn_7down____chr6_130192311130192710____1399
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATTC
CCTGTGAC---------------------------------------------CTGCACA
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTTCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGTCCTGTTCC-------------------
------------TG------------------CT----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACCTTGTG--------------
---------------------------AC-CCCCACTC--TGCCCACCAGAGAACAACCC
CCC-T----------TTTTCCTTTACCTTCCCA-AATCCTATAA-----------AATG-
GCCCCACCC-C---ATCTCCCTTCGCTGACTCTCTTTTTGGACTCAGCC-ACCAGCACCC
AGGTAA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGTCGCGCATGA---------
>LTR7d2_chr18_3180378331810056_4313_ZNF534_KAP1_EncodeRepressed_NANOG_GRO2of7__chr18_3180378331804182____1399
-GTCACGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACA
TACACATCCAGA------------------------------------------------
-----------------------------TGGTC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACCTTGTG--------------
---------------------------AC-CCCCACTC--TGCCCGCCAGAGAACAACCC
CCC-T----------TTTTCCTTTACCTACCCA-AATCCTATAA-----------AACA-
GCCCCACCC-----ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GATGGTCT
CTTCACACGGACGCGCATGA---------
>LTR7d2_chr11_15365096_15365507_EncodeTxn_SOLO_C_7down___chr11_1536509615365507___1399
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATAATC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TCGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATAAC
ACT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TG--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACCTTGTG--------------
---------------------------AC-CCACACTC--TGCCCGCCAGAGAATAACCC
CCC-T----------TTTTCCTTTACCTACCCA-CATTCTATAA-----------AACG-
GCCCTACCC-C---ATCTCCCTTAGCTGACTCTCTTTTCAGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAACCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACTCGCATG----------
>LTR7d2_chr7_83833685_83834091_h3k27ac_TSS_SOLO_NANOG_SMAD11_C_7down___chr7_8383368583834091___1400
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATAC
CCTGTGAC---------------------------------------------CTGCACT
TACACATCCAGA------------------------------------------------
-----------------------------TCCCC--------------------------
------------------GGTTCCTGCCTTCACTGAT-----------------------
---GACATTCCACCACGAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACCTCGTG--------------
---------------------------AC-CCCCACTC--TGCCTGCCAGAGAACACACC
CCC-T----------TTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C---ATCTCCCTTCACTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGTTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATG----------
>LTR7d2_chr2_98421606_98422016_EncodeTxn_SOLO_7down____chr2_9842160698422016____1399
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATTATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TCTCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAC----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACCTTGTG--------------
---------------------------AC-CCCCACTC--TGCCTGCCAGAGAACAACCC
CCC-T----------TTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C---ATCTCCCTTCGCTGTCTCTCTTTTGGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TAT--GGTGGTCT
CTTCACACGGACGCGCATGA---------
>LTR7d2_chrX_12939865_12945537_3325_ZNF534_ZNF90_KAP1_EncodeRepressed_NANOG_GRO3of7_7down____chrX_1293986512940276____1410
-GTCAGGCCTCTGAGCTCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAT---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCT--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCG-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAATTC
CC--TTTGACTGTAATTTTCCTTTATCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTTGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACAGGGACACGCATGA---------
>LTR7d2_chr11_119649893_119650304_weakenh_SOLO_NANOG_SMAD11_C_7down___chr11_119649893119650304___1410
TGTCAAGCCTCTGAGCCCAGG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCCGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACCTTGTG--------------
---------------------------AC-CCCCACTCT-TGCCCGCCAGATAACAACCC
CC--TTTGACTGTAATTTTCCTTTATCTACCCA-AATCTTATAA-----------AATG-
GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTTGGACTCAGCCCTCCTGCACCC
AGGTGA-----AA--TAAAAAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACACACATG----------
>LTR7d2_chr8_144953919_144959998_5744_ZNF534_ZNF90_KAP1_EncodeRepressed_NANOG_GRO5of7_GRO6of7_GRO7of7_C_7down___chr8_144959589144959998___1408
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAA-CC
CCC-TTTGACTGTAATTTTCCTTTAACTACCCA-AATATTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCACTGA--CTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACTTGGACGTGCATG----------
>LTR7d2_chr3_170672177_170678262_5703_ZNF534_ZNF90_KAP1_EncodeTxn_GRO4of7_C_7down___chr3_170677851170678262___1410
TGTCAGGGCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
TCTGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CG----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAA----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAA-CT
CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG-
GCCCCACCC-C-T-GTCTCCTTTCACTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACACGCATG----------
>LTR7d2_chr6_109855775_109861579_3393_ZNF534_ZNF90_KAP1_EncodeTxn_C_7down___chr6_109861168109861579___1411
TGTCAGGCCTCTGAGCCCAAG-----------------------CTGAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTACTTCTCCTGG--------------
----TTAATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCCTGTG--------------
---------------------------AC-CCCCACTCC-TGCTCACCAGAGAACAAACC
CCC-TTTGACTGTAATTTTCCTTTACCTGCCCA-AATCTTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGCGGTCT
CTTCACACGGACGCGCATG----------
>LTR7d2_chr10_20119204_20124934_4521_ZNF534_ZNF90_KAP1_EncodeTxn_GRO1of7_C_7down___chr10_2012453420124934___1399
TGTCAGGCCTCTGAGCCCAAG-----------------------CTGAGCCATGATATTC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
AAT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-CC
CCC-T----------TTTTCCTTCACCTATCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C---ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACTCAGACGCAGG------------
>LTR7d2_chr3_20967541_20973231_4394_ZNF534_EncodeTxn_GRO5of7_GRO6of7_GRO7of7_C_7down___chr3_2097282020973231___1408
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------AGTTCCTGCCCTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATC---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAA-CC
CCC-TGTGACTATAATTTTCCTTTATCTACCCA-AATCCTATAA-----------AACG-
ACCCCACCC-C---ATCTCCCTCTGCTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGATGCATG------------
>LTR7d2_chr4_117252107_117257788_4433_ZNF534_KAP1_EncodeRepressed_GRO3of7_7down____chr4_117252107117252508____1401
-GTCAGGCCTCTGAACCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCT--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------AAG----TACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACGA-CC
CCC------CT----TTTTCCTTTACCTACCCA-AATCCTATAA-----------AAAG-
GCCCCACCT-C---ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--TGTGGTCT
CTTCACACAGACGCATGTGA---------
>LTR7d2_chr11_56059270_56059680_h3k27ac_EncodeRepressed_SOLO_C_7down___chr11_5605927056059680___1408
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCCTATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTATTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAA-CC
CCC-TTCGACTGTAATTTTCCTTTCTCTACCCA-AATCGTATAA-----------AATG-
GCCCCACCC-T---ATCTTCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTTGTCT
CTTCACACAGACACATG------------
>LTR7d2_chr15_52738558_52745204_5956_ZNF534_KAP1_EncodeRepressed_NANOG_GRO1of7_7down____chr15_5273855852738987____1409
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TCGCC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCTCCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCAAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACCTTGTG--------------
---------------------------AC-CCCCACT-C-TGCCCACCAGAGAACAACCC
CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AATG-
GCCCCACCC-C---ATCTCCCTTCGCTGACTCTCTCTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAACCTG--TTT--GGTGGTCT
CTTCATGCTGACGCAAGTGA---------
>LTR7d2_chr10_45045463_45045865_SOLO_C_7down___chr10_4504546345045865___1402
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCTAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAAAGAAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTTTCCTGG--------------
----CTCATCCTCACTCA---AAGCTCCCC------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------TACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAACCC
CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AATG-
GCCCCACCC-C---ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACGCGAGTG----------
>LTR7d2_chr11_83442184_83448545_3188_ZNF534_ZNF90_KAP1_EncodeTxn_C_7down___chr11_8344818683448545___1359
TGTCAGGCCTCTGAGTCCAAG-----------------------CTAAGCCATCATATCC
CCTGTTAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---GACA-----------------------------------------------------
------------------------------------------------------------
-CT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TG--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACCTTGTG--------------
---------------------------AC-CCCCACTAC-TGCCCATCAGAGAACAACCC
CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AACCTTATAA-----------AATG-
GCCCCACCC-C---ATCTCCCTTCACTGACTCTCTTTTCAGACTCAGCCCGCCTACACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACAGAAAGCCTG--TTT--GGTGGTCT
GTTCACACGGACACGAGTG----------
>LTR7d2_chr5_161248409_161255013_3138_ZNF534_KAP1_EncodeTxn_7down____chr5_161248409161248819____1406
---CAGGCCCCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCAGG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--CTGAAATTCCTT---CTGG--------------
----CTCATCCTGGTTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACCTTGTG--------------
---------------------------AC-CCCCACCCC-TGCCCATCAGAGAACAACCC
CCC-TTTGATTGTAATTTTACTTTACCTACCCA-AATCTTATAA-----------AATG-
GGCCCACCC-C---ATCTCCCTTCACTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--CAAACAGCCTTGTTGATCACACAAAGCCTG--TTT--GGTGGTCG
CTTCACATGGACGTGAGTGA---------
>LTR7d2_chr2_237606784237612654_3356_ZNF534_ZNF90_KAP1_EncodeRepressed_GRO2of7__chr2_237606784237607195____1411
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACA
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GCC--------TT--GTGAAATTCTTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCTCCTC-TGCCCACCAGAGAACAACCC
CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AATG-
GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTCAGACTCAGCCCACCTGCACCC
ATGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGCTCATGA---------
>LTR7d2_chr9_22658527_22664062_3090_1_EncodeTxn_C_7down___chr9_2266366022664062___1400
TGTCAGGCCTCTAAGCCCAAG-----------------------CTAAGCCATCATAAAC
CCTGTGAC---------------------------------------------CTGCACA
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTAATGAC
ACT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCTTTCTCCTGG--------------
----CTCTTCCTGGCTCAA--AAGCTCCCCTAA---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCC-TACTC-CTCCAACCAGAGAACAACCC
CCC-TT----------TTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACTC-C-T-ATCTCCCTTTGCTGACTCCCTTTTCAGACTCCCTTCACCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTGACATGGACGCGCATG----------
>LTR7d2_chrY_6139215_6144893_4289_KAP1_7down____chrY_61392156139624____1409
-GTCAGGCCTCTGAGCCTAAG-----------------------CTAAGCCATCATAACT
CCTGTGAC---------------------------------------------CTGCACT
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGTCCTGTTCC-------------------
------------TG------------------TC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATTCTGGCTCAA--AAGCTCCACTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCAC-TC-TGCCTGCCAGAGAACAAC-C
CCG-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACA-
ACCCCACCC-C-T-ATCTTCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAGACAGCTTTATTGGTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGTGCATGA---------
>LTR7d2_chrX_93022959_93028634_4479_ZNF534_KAP1_EncodeRepressed_GRO4of7_7down____chrX_9302295993023368____1409
-GTCAGGCCTCTGAGCCTAAG-----------------------CTAAGCCATCATATTT
CCTGTGAC---------------------------------------------CTGCGCT
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGTCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCACTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCAC-TC-TGCCTGCCAGAGAACAAC-C
CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
ACCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCAGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAGACAGCTTTATTGGTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCATATGGACGTGCATGA---------
>LTR7d2_chr8_103645854_103646263_enh_SOLO_NANOG_C_7down___chr8_103645854103646263___1409
--TCAGGCCTCTGAGCCCAAG-----------------------TTAAGCCATCATATCC
CCTGTGGC---------------------------------------------CTGCTCC
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGTCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTGC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACTTTGTG--------------
---------------------------AA-CCCCACAAC-TGCCCACCAGAGAACAACCC
CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACA-
GCCCCACCC-G-T-ATCTCCCTTCACTGACTCTCTTTTCAGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCTTTATTGCTCACAGAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGTGTATG----------
>LTR7d2_chr2_140426394_140432402_3077_1_EncodeRepressed_NANOG_GRO4of7_7down____chr2_140426394140426801____1407
---CAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCATT
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--CTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTTCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACATC-TGCCTGCCAGAGAACAACCC
CTC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACA-
GCCCCACCC-A-T-ATCTTCCTTCGCTGAC--TCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGTGCATGA---------
>LTR7d2_chr2_35818373_35818777_EncodeRepressed_SOLO_NANOG_7down____chr2_3581837335818777____1404
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCAGG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACATAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTT---CTGG--------------
----CCCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAAATC
CCC-TTTGACTGTAATTTTCCTTTAC----CCA-AATCCTATAA-----------ATTG-
GCCCCATCC-C-T-ATCTCCCTTCCCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGTGCATGA---------
>LTR7d2_chr6_80509796_80515803_2811_KAP1_EncodeTxn_NANOG_GRO5of7_GRO6of7_GRO7of7_C_7down___chr6_8051539380515803___1410
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCATG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---GATATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----TTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACACC-TGCCCGCCAGAGAATAA-CC
CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AATG-
GCCCCACCC-C-T-ATCTCCCTTCCCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
ACATGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTTACATGGACACACATG----------
>LTR7d2_chr10_89329769_89330178_EncodeTxn_SOLO_C_7down___chr10_8932976989330178___1409
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
--TGTGAC---------------------------------------------CTGCATG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CCGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACACC-TGCCCACCAGAGAACAACCC
CCC-TTTGACAGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AATG-
GCCCCACCC-C-T-ATCTCCCTTCCCTGACTTTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACTTGCATG----------
>LTR7d2_chr5_98752537_98752948_h3k27ac_enh_SOLO_NANOG_C_7down___chr5_9875253798752948___1411
TGTCAGACCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCAGG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CCGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCAACACC-TGCCCGCCAGAGAACAACCC
CCC-TTTGACTGTAATTTTCCTTTACCTATCCA-AATCCTATAA-----------AACT-
TCCCTACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CATCTCACGGACGTGCATG----------
>LTR7d2_chr12_44450052_44456067_3051_1_EncodeTxn_GRO3of7_7down____chr12_4445005244450463____1407
-GTCAGGCTTCTGAGTCCAAG-----------------------CTAAGCCATCATAGCC
CCTGTGAC---------------------------------------------CTGCACA
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---GACATTCTACCACAAAAGAAGTGAAAATGGCCAATTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCAACACC-TGCCCACCAGAGAACGACCC
CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AATG-
GCCCCACCC-C-T-ATCTCTCTTTGCTG----TCTTTTCGGACTCAGCCCACCTTTACCC
GGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGATGTGCATGA---------
>LTR7d2_chr3_178207403_178207808_h3k27ac_EncodeTxn_SOLO_7down____chr3_178207403178207808____1405
-GTCAGGCTTCTGAGCCCAAG-----------------------ATAAGCCATCACATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTAATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTATG--------------
---------------------------AC-CCCCACACC-TGCCTGCCAGAGAACCACCC
CAC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------ATT--
GCCCCACCC-C-T-ATCTCCCTTTGCTGCCTCTCTTTTCGGACTCAGCCCACCTGGACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACACG--------------
>LTR7d2_chr18_35356140_35361791_2942_ZNF90_KAP1_EncodeRepressed_GRO3of7_C_7down___chr18_3536138435361791___1407
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCT
CCTGTGAC---------------------------------------------CTGCATG
TACACATCCAGA------------------------------------------------
-----------------------------TGACT--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAATAAGTGAAAATGACCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
AAT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCT----GAGAACAACCC
CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AATG-
GCCCCGCCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGTCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCATATGGACGCGCATG----------
>LTR7d2_chr9_75351145_75357575_3057_ZNF534_KAP1_EncodeRepressed_GRO5of7_GRO6of7_GRO7of7_C_7down___chr9_7535716475357575___1411
TGTCAGATCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTTCATG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCT--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GTCATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCACCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAA----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAACCC
CCG-TTTGACTGTAATTTTCCTTTACCTACACA-AATCTTATAA-----------AACA-
GCCCCACCC-C-T-ATCTCCCTTCACTGATTCTCTTTTCAGACTCAGCCTGCCTGCACCC
AAGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCAAATGGACACACATG----------
>LTR7d2_chr3_146353817_146359463_2887_KAP1_EncodeTxn_GRO5of7_GRO6of7_GRO7of7_7down____chr3_146353817146354226____1407
---CAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACA
TACACATCCAGA------------------------------------------------
-----------------------------TGGCT--------------------------
------------------GGTTCCTGCCTTAGCTGAT-----------------------
---GACATTCCACCACAGAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCATCAGAGAACAACCC
C---TTTGACTGTAATTTTCCTTTACCTATCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTTTCTGACTCTCTTTTCAGACTCAGTCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCAAACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGATGCACATGA---------
>LTR7d2_chr20_38592396_38598799_2915_ZNF534_KAP1_EncodeRepressed_NANOG_C_7down___chr20_3859838838598799___1409
TGTCAGGCCTCTGAGCCCAAG-----------------------CTTAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCT--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAT
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCGGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-TCCCACTCC-TGCCCGCCAGAGAACAACCC
C---TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTCGGATTCAGCCTGCCTGCATCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGATGCACATG----------
>LTR7d2_chr9_122535746_122536148_EncodeRepressed_SOLO_C_7down___chr9_122535746122536148___1399
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCT--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTCA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAACCC
C---TTT----------TTCCTTTACCTACCCA-AATCTTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCCCTTTTCCGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACATGAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCACATG----------
>LTR7d2_chr8_128914459_128920320_3249_ZNF534_ZNF90_KAP1_EncodeTxn_GRO1of7_7down____chr8_128914459128914868____1408
-GTCAGGCCTCTGAGCCCAAA-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCA--------------------------
------------------GGTTCCTGCCTTAACTAAT-----------------------
---GACATTCCACCACAAAAGAAATGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAACTTCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGA---ACCC
CCT-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AATG-
GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCAGACAAAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGTCTG--TTT--GGTGGTCT
CTTCACACGGACATGCATGA---------
>LTR7d2_chr4_179720525179726896_3376_ZNF534_KAP1_EncodeRepressed_GRO2of7__chr4_179720525179720933____1407
-GTCAGGCCTCTGAGCCCAAG-----------------------TGAAGCCATCATATCC
CCTGTGGC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AATCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTA--------------
---------------------------AC-CCCCACTC--TGCCCACCAGAGA---ACCC
CCA-TTTGACTGTAATTTTCCATTACCTTCCCA-AATCTTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCTACCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGTCTG--TTT--AATGGTCT
CTTCACATGGACACACATGA---------
>LTR7d1_chr17_57017124_57017526_enh_SOLO_7down____chr17_5701712457017526____1401
-GTCAAGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTATGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAATGAAAATGGCCTGTTAC-------------------
------------TG------------------CC----------TTAA----CTGATGGC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAACCC
CCC-TTT----------TTCCTTTACCTACCCA-AATCCTATGA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACGCGAGTGA---------
>LTR7d2_chr6_1875414418759870_3389_ZNF534_k4me3_EncodeTxn_wangmod_GRO2of7__chr6_1875948018759870___1390
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCATG
TACACATCCGGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GATTCCTGCCTTAATTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGACTGTTCC-------------------
------------TG------------------CC----------TTAA----CGGATGGC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCA----------A--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAACCC
CCC-TTT----------T-CCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAATAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGATGCACATG----------
>LTR7d2_chr12_80783123_80788892_3404_ZNF534_EncodeTxn_chimeric_C_7down___chr12_8078848880788892___1400
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGCCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CGGATGGT
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAAAAAACAACCC
CCC-TTT----------T-CCTTTACCTATCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTCGAACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCATACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATG----------
>LTR7d2_chr14_4825519948260940_3297_ZNF534_k27ac_TSS_NANOG_wanghigh_GRO2of7__chr14_4826054148260940___1399
TGTCAGGCCTCTGGGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCT--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GGCATTCCACCACAAAAGAAATGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGGC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCTTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCTACTCC-TGTCTGCCAGAGAACAACCC
CCC-TTT----------TTCCTTTATGTACCCA-AATCTTATAA-----------AACA-
GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTT--CGGACTCGGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGATGTGAGTG----------
>LTR7d2_chr8_90589149065195_4610_ZNF534_KAP1_EncodeTxn_GRO2of7__chr8_90647949065195___1401
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGGC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTAAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TTCCTGCCAGAGAACAACCC
CGC-TTT----------TTCCTTTACTTACCCA-AATCCTATAA-----------AACA-
GCCCCACCC-C-T-GTCTCCCTTCGCTGACTCTCTTCTCGGACTCAGCCCGCTTGCACCC
AGGTGA-----AA--TAAACAGCCCTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGATGCGCATG----------
>LTR7d2_chr15_62296471_62296867_TSS_SOLO_NANOG_SMAD11_7down____chr15_6229647162296867____1396
-GTCAGGCCTCTGAGCCGAAG-----------------------CTAAACCATCATATCC
CCTGTGAC---------------------------------------------CTGCACA
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAATGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-CGCCTGCCAGAGAACAACCC
CCC-TTT----------TTCCTTTACCTACCCA-AATCCTATGA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCTTTATTGCTCACGCAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGATGCG--------------
>LTR7d2_chr1_239030861_239031261_EncodeTxn_SOLO_NANOG_7down____chr1_239030861239031261____1400
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAATGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGGC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AGGCTCCCATAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAACTC
CCC-TTT----------TTCCTTTACCTACCCA-AATCCTATAA-----------AACA-
GCCCCACCC-C-T-GTCTCCCTTTGCTGACTCTCTTTTCGAACTCAGCCTGCCTACACCC
AGGTGA-----AA--TAAACAGCTTTATCGCTCACGCAAAGCCTG--TTT--GGTGGTCT
CTTCCCATGGATGCGCATG----------
>LTR7d2_chr9_2528817625294101_3195_1_EncodeTxn_wangmod_GRO2of7__chr9_2528817625288591____1399
---CAGGCGTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CTTGTGAC---------------------------------------------TTGCATG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCA--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAATGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATAAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--ACCCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAACAC
CCC-TTT----------TTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-ATTTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTTCCCCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACACGCATGA---------
>LTR7d2_chr4_130767409_130773268_3284_ZNF534_KAP1_k27ac_weakenh_NANOG_GRO1of7_7down____chr4_130767409130767810____1401
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCAAG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCT--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAATGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGGC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GCGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTCGTG--------------
---------------------------AC-CCCCACTAC-TGCCTGCCAGAGAACAACCC
CCC-TTT----------TTCCTTAACCTACCCA-AATCCTATAT-----------AACG-
GCCCCACTC-C-T-ATCTCCCTTCGCTGACTCTGTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTTTTGCTCACACAAAGCCTG--TTT--GGTGATCT
CGTCACATGGACGCGCATGA---------
>LTR7d2_chr4_11653569_11659254_3136_1_EncodeTxn_GRO5of7_GRO6of7_GRO7of7_C_7down___chr4_1165885911659254___1395
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCATG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------TGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAATGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCTTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCC------------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAAC--CCC
CC--TTT----------TTCCTTTACCTACACA-AATCCTATAA-----------AACG-
GCCCCACAC-C-T-ATCTCCCTTAGCTGACTCTCTTTTCAGGCTCAGCCCGCCTGCACCC
AGGTAA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCACATG----------
>LTR7d2_chr7_120776623_120782885_4490_ZNF534_EncodeTxn_GRO5of7_GRO6of7_GRO7of7_C_7down___chr7_120782486120782885___1399
-GTCAGGCCTCTGAGCCTAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCATG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTGC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCATTCC-TGCCCGCCAGAGAAAAACCC
CC--TTT----------TTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTAGCTGACTCTCTTTTCGGACTCAGCTCGCCTGTACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTA--TTT--GGTGGTCT
CTTCACACAGACGCGCATG----------
>LTR7d2_chr3_45313431_45313830_h3k27ac_enh_SOLO_NANOG_C_7down___chr3_4531343145313830___1398
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATTCAGA------------------------------------------------
-----------------------------TGGCT--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-CGCCTGCCAGAGAAC---CC
CCC-TTT----------TTCCTTTACCTACTCA-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTCGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATG----------
>LTR7d2_chr6_138329818_138330218_h3k27ac_weakenh_SOLO_C_7down___chr6_138329818138330218___1400
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATGTCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCT--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CT-ATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAACCC
CCC-TTT----------TTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCTGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACGTGCATG----------
>LTR7d2_chr9_25668929_25675217_4348_ZNF534_EncodeTxn_wangmod_7down____chr9_2566892925669329____1400
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------AGTTCCTGCCTCAACTGAT-----------------------
---GACATTCCACCACAAAACAGGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CTCCTTGTG--------------
---------------------------A--CCCCACTCC-TGCCTGCCAGAGAACAATCC
CCC-TTT----------TTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-G-T-ATCTCCCTTCAATGATTCTCTTTTCGGACTCAGCCTGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGCTGCTCACACAAAGCCTT--TTT--GGTGGTCT
CTTCACACCGAAGCGCATGA---------
>LTR7d2_chr2_37205224_37205635_h3k27ac_enh_SOLO_NANOG_44108_SMAD11_7down____chr2_3720522437205635____1401
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
CACACATCCAGA------------------------------------------------
-----------------------------TGGTC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCAGGCAGAGAACAACCC
CCT-TTT----------TCCTTTTTTCTACCCA-AATCCTATAA-----------AATG-
GCCCCACCC-C-T-ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAGCAGCCTTGTTGCTCATGCAAAGCCTG--TTT--GGTGGTCT
CTTCATACAGACGCGCATGA---------
>LTR7d2_chr5_40252645_40253046_EncodeRepressed_SOLO_C_7down___chr5_4025264540253046___1401
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGTC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCT--------------------------
------------------GGTTCCTGCCTTTACTGAT-----------------------
---GACATTCCACCACAGAAGAAATGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAACCC
CCC-TTT----------TCCCTTTATCTACCCA-AATCCTATAA-----------AATG-
GCCCCACCC-C-T-ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGTCCACCTGCACCC
AGGTGA-----AA--TAAAAAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATG----------
>LTR7d2_chr3_61692473_61692874_enh_SOLO_NANOG_C_7down___chr3_6169247361692874___1401
TGTCAGGCCTATGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAATGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCT-TGCCTGCCAGAGAACAACCC
CCG-TTT----------TTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-ACCTCGCCTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGTACCC
AGGTGA-----AA--TAAACAGCCTTGCTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATG----------
>LTR7d2_chr4_186044023_186049672_3037_ZNF90_KAP1_EncodeTxn_chimeric_GRO4of7_C_7down___chr4_186049275186049672___1397
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACGTTCCACCACAAAATAAATGAAAATGGCCTGTTTC-------------------
------------TG------------------CC----------TTAA----CTGATGAT
TTT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCTGCCGGAGAACAACCC
CTC-TTT----------TTCCTTTATCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCG----CTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACACACATG----------
>LTR7d2_chr7_22703358_22709313_4710_ZNF534_k4me3_enh_NANOG_chimeric_GRO1of7_7down____chr7_2270335822703765____1407
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCATA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTCGTG--------------
---------------------------AC-CCCCACTCC-TGCCCGACAGAGAACAACCC
CTT-TTT----------TTCCTTTACCTACCCA-GATCCTATAA-----------AATG-
GCCCCACCC-C-C-ATCTCCCTTTGCTGACTCTCTT--CGAACTCAGCCTGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCACATGA---------
>LTR7d1_chr14_61133252_61139160_4641_ZNF534_ZNF90_KAP1_EncodeTxn_GRO4of7_C_7down___chr14_6113875761139160___1398
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATTATATCC
CCTGTGAC---------------------------------------------CTTCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGTC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAATGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAG
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTAAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCAACTCC-TGCCTGCCAGAGA---ACCC
CCC-TTT----------TTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTAGCTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--AGTGGTCT
CTTCACGTGGACACGAGTG----------
>LTR7d1_chr12_73001848_73007727_1993_ZNF534_EncodeRepressed_NANOG_GRO3of7_C_7down___chr12_7300731773007727___1410
TGTCAGGCCTCTGAGCCCAAA-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACA
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAAAGAAAACGGCCTGTTTC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAACCC
CCC-TTTGACTGTAATTTTTGTTTACCTACCCA-AATCCTATAA-----------AATG-
GCCCCACCC-C---ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAATAGCCTTGTTGCTCACACAAAGACTG--TTT--GGTGGTCT
CTTCACATGGACACGAGTG----------
>LTR7d1_chr6_80647676_80653384_1757_ZNF534_EncodeRepressed_C_7down___chr6_8065298380653384___1401
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATTATATCC
CCTGTGAC---------------------------------------------CTGCATG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGTTCAA--AAGCTCCCCCGC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCAACCC-TGCCCGCCAGAGAACAATCC
CCC-TT----------TTTCCTTTACCTACCCA-AATCTTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCTTG--TTT--GGTGGTCT
CTTCACACAGACATGCATG----------
>LTR7d2_chr10_1349016_1354570_2706_1_EncodeTxn_GRO4of7_7down____chr10_13490161349420____1400
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCAGG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------AGTTTCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--ATGAACGTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTGC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC--CCCACCCC-TGCCTGCCAGAGAACAACCC
CCC-TT----------CTTCCTTTACCTACCCA-AATCTTATAA-----------AACA-
GCCCCACCC-C-T-ACCTCCCTTCGCTGACTCTCTTTTTGGACTCAGCCCGCCTGCAACC
AGGTGA-----AA--TAAACAGCCATGTTGCTCCCACAAAGCCTG--TTT--GGTGGTCC
TTTCACACGAACGTGCATGA---------
>LTR7d2_chr4_157596585_157597000_weakenh_SOLO_C_7down___chr4_157596585157597000___1408
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCAGG
TACACAGGCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------AGTTCCTGCCTTAACCGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------CTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTGC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACCCC-TGCCCGCC-GAGGGCAACCC
CCT-TT-GACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG-
GCCCCACCC-C-T-TTCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC
AGGTGA-----AA--T-AACAGCCTTGTTGCTCACACAAATCCTG--TTC--GGTGGTCT
CTTCACAGGGACGCGCATG----------
>LTR7d2_chr11_5160297_5166117_3254_ZNF534_TSSflanking_NANOG_chimeric_GRO5of7_GRO6of7_GRO7of7_C_7down___chr11_51657065166117___1411
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATGTCC
CCTGTGAC---------------------------------------------CTGCATA
TACACATACAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------AGTTTCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAACCC
CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACA-
GCCCCACTC-C-T-ATCTCCCTTTGCTGACTCTCTTTTTGGACTCAGCCTGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTTACACAAAGCCTG--TTT--GGTAGTCT
CTTCATATGGACGCGCATG----------
>LTR7d2_chr2_116183753_116189710_3107_KAP1_EncodeTxn_C_7down___chr2_116189300116189710___1410
TGTCAGGCCCCTGAGCCCAAG-----------------------CTAAGCTATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------AGTTCCTG-CTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAA----CACCTTGTG--------------
---------------------------AC-CCCCACCCC-TGCCCGCCAGAGAACAACCC
CCC-TTTGAGTGTAATTTTCCTTTAGCTACCCA-AATCTTATAA-----------AATG-
GCCCTACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTTGGACTCAGCCTGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACGCAAAGCCTG--TTT--GGTGGTCT
CTTCAAAAGGACACGCATG----------
>LTR7d2_chr3_174232028_174232438_h3k27ac_enh_SOLO_FOXP1_NANOG_44108_C_7down___chr3_174232028174232438___1409
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTCA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------CT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------GAG----CACCTTGTG--------------
---------------------------AC-C-CCACTC--TGCCCGCCAGAGAACAACCC
CCC-TTTGACTGTAATTTTCCTTTGCCTACCCA-AATCCTATAA-----------AACG-
GCCCCATCC-C-T-ACCTCCCATCGTTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AG--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTGT
CTTCACACAGACGCGCATG----------
>LTR7d2_chr13_54127418_54133158_3099_1_k4me3_weakenh_NANOG_SMAD11_wanghigh_C_7down___chr13_5413276154133158___1390
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGTCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----TTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CGCCTTTTG--------------
---------------------------AC-C-CCACTC---------------------C
CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------GACG-
GCCCTATCC-C-T-GTCTCCCTTGGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAAACGCGCATG----------
>LTR7d2_chr5_144611352_144616900_2412_1_EncodeTxn_GRO4of7_C_7down___chr5_144616491144616900___1409
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACA
CACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTTC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----ATCATCCTGGCTCAA--AAGCTCCCTTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTCGTG--------------
---------------------------AC-C-CCACTCC-TGCCCTCCAGAGAACAACCC
CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATATTATAA-----------AATG-
GCCCCA-CC-C-C-ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCAGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--TGTGGTCT
CTTCAAACAGAAATGCATG----------
>LTR7d2_chr9_3500329335009333_3295_ZNF534_enh_GRO2of7__chr9_3500329335003704____1411
-GCCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCATG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAATGAAAGTGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CGCCCCCCC-TGCCCGCCAGAGAACAACCC
CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTGGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCT
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACGCGCATGA---------
>LTR7d2_chr1_82955311_82961594_4405_ZNF534_EncodeRepressed_7down____chr1_8295531182955724____1411
-GTCAGGCCTCGGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGCC---------------------------------------------CTGCATG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GATATTCCACCATAAAAGAAATGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAT----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCTCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACTTTGTG--------------
---------------------------AC-CCCTACTCC-TGCCCGCCAGAGAACAACCC
GCC-TTGGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG-
GCCCCACCC-C-T-ACCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCCTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACACGCATGA---------
>LTR7d2_chr5_126673078_126673480_enh_SOLO_7down____chr5_126673078126673480____1401
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCACCATATCC
CCTGTGAC---------------------------------------------CTGCATG
TACCCATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCAAAAAAGAAATGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCACCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CAACTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAACCC
CCC-T----------TTTTCCTTTACCTACCCA-AATCCTATAA-----------AACT-
GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACACGCATGA---------
>LTR7d2_chr15_92511307_92517425_3349_ZNF534_ZNF90_KAP1_NANOG_7down____chr15_9251130792511769____1409
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGTCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--TTGAAATTCCTTCTCCAGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAACCC
C---TTTGACTGTAATTTTCCTTCACCTACCCA-AATCTTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCGCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCGCACAAAGCCTG--TTT--GGTAGTCT
CTTCACACCGACACACATGA---------
>LTR7d2_chr3_118733396_118733806_EncodeTxn_SOLO_NANOG_C_7down___chr3_118733396118733806___1410
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
CACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAATGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATAAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--ATGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCATTCC-TGCCCGCCAGAGAACAACCC
CCA-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTGTAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGT-A-----AA--TAAACAGCCTTGTTGCTCACACACAGCCTG--TTT--AGTGGTCT
CTTCACACGGACGCACGTG----------
>LTR7d1_chr11_37969219_37969623_EncodeTxn_SOLO_C_7down___chr11_3796921937969623___1404
TGTCAGGCCTCTGAGCCTAAG-----------------------CTAAGTCATCATATCC
CCTGTGAC---------------------------------------------CCGCACG
TACACATCCAGA------------------------------------------------
-----------------------------CGGCT--------------------------
------------------CGTTCTTGCCTTAACTGAT-----------------------
---GACATTCTACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------GC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC---------T--GTGAAATTCCTTCTCCTGG--------------
----ATCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCTACTCC-TGCCTGCCAGAGAACAACCC
CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AATG-
GCCCTACCC-C-T-ATCTCCTTTTGCTGA--CTCTTTTTGGACTCAGCCCGCCTGCACCC
AAGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACG----------------
>LTR7d1_chr2_57227242_57235205_2902_ZNF534_EncodeRepressed_7down____chr2_5722724257227641____1399
-GTCAGGTCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CTTGTGAC---------------------------------------------CCACACA
TACACATCCAGA------------------------------------------------
-----------------------------TGGCT--------------------------
------------------GGTTGCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAATGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTC--------------------
--------TCCTGGCTCAA--AAGCTCCTCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCTACCAGAGAACAAACC
CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AATG-
GCCCCACCC-C-T-GTCTCCCTTCGCTGA--CTCTTTTTGGACTCAGCCCGTCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACCAATGCAAGTGA---------
>LTR7d2_chr11_29973188_29973618_EncodeTxn_SOLO_C_7int___chr11_2997318829973618___1391
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TATATGCCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------TGTTCCTGCCTTAACTGAT-----------------------
---GACATTCTACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----TTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACT--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTGC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CATCTTGTG--------------
---------------------------AC-CCCCACCCC-TGCCCACCAGAGAACAACCC
CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AAT------A-----------AATG-
TCCCCACCC-C-T-ATCTCCTTTC----A--CTCTTTTTGGACTCAGCCCACCTACACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTAGTCT
CTTCACACCGA------------------
>LTR7d2_chr3_163907530_163913988_3271_ZNF534_KAP1_EncodeTxn_NANOG_7down____chr3_163907530163907935____1405
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACAACCAGA------------------------------------------------
-----------------------------GGGCC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCATCACAAAAGAAATGAAAATGGCC-ATTCC-------------------
------------TG------------------AC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCACCAGAGA---ACCC
CCG-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AATG-
GCCCCACCC-C-T-ATCTCCTTTCACTGA--CTCTTTTTGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACGCACATGA---------
>LTR7d1_chrX_114051229_114051630_EncodeTxn_SOLO_FOXP1_NANOG_7down____chrX_114051229114051630____1401
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------AC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAACCC
CCC-TTT----------TTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGAGTGA---------
>LTR7d1_chr10_50503342_50503701_weakenh_SOLO_7down____chr10_5050334250503701____1359
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CCGCATG
TACACATCCAGA------------------------------------------------
-----------------------------TAGCC--------------------------
------------------GGTTCCTGCCTTAACTGA------------------------
------------------------------------------------------------
--------------------------------------------------------TGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCAGGCTCTA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAACCC
C-C-TTTGACTGTAATTTTCCTTTACCTACCCA-CATCTTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACACAGCCTG--TTT--GGTGGTCT
CTTCACACGGATATGAGTGA---------
>LTR7d2_chr9_25675972_25676379_TSSflanking_SOLO_7down____chr9_2567597225676379____1404
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATGTCC
CCTGTGAC---------------------------------------------CCACATG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCT--------------------------
------------------GGTTCTTTCCTTAACTGAC-----------------------
---GACATTCCACCACACAACAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTGC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTCGTG--------------
---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAACCC
CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AAACTTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCACTGAC--TCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACAAAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACACG--------------
>LTR7d1_chr11_81802232_81802643_h3k27ac_EncodeRepressed_SOLO_7down____chr11_8180223281802643____1411
-GTCAGGCTGCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCATG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAATGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATAAG
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGACTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAATCC
CCC-TTTGACTGTAATTTTGCTTTACCTACCCA-AATCTTATAA-----------AACG-
GCCCTAACC-C-T-ATCTCCCTTCACTGTATCTCTTTTTGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCATAGGGACATGAGTGA---------
>LTR7d1_chr19_54894297_54900597_1746_ZNF534_EncodeTxn_chimeric_C_7down___chr19_5490018554900597___1411
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGGC---------------------------------------------CTGTATG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACGAAAGAAATGAAAATGGCCTGTTCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--ATGAAATTCCTTCTCCTGG--------------
----CTCATCCCGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AA-CCCCACTCC-TGCCCGCCAGAGAACAACCC
CCT-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCGCACTC-C-T-ATCTCCCTTTGCTGACTCTCTTTCTGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAATCCTG--TTT--GGTGGTCT
CTTCACACGGACGTGAGTG----------
>LTR7d1_chr4_178207120_178213342_3572_ZNF534_ZNF90_KAP1_EncodeRepressed_7down____chr4_178207120178207531____1411
-GTCAGGCCTCTGACCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCT--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACTAAGGAAATGAAAATGGCCAGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGGC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAACCC
CCG-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTTGGACTCAGCCCACCTGCACCC
GGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAACCTG--TTT--GGTGGTCT
CTTCACATGGAAGTGCATGA---------
>LTR7d2_chr5_81953304_81959235_4379_ZNF534_ZNF90_KAP1_EncodeRepressed_7down____chr5_8195330481953661____1357
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATT---------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTC--TGCCCACCAAAGAACAACCC
CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTTGCTGACTC--TTTTTGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACAGGGATGTGAGTGA---------
>LTR7d1_chr18_75093813_75094223_EncodeTxn_SOLO_C_7down___chr18_7509381375094223___1410
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAG-CATCATATCC
CCTGTGAC---------------------------------------------CTGCATG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAATGAAAATTGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
AAT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAACCC
CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG-
GCCCCACCC-C-G-ATCTCCCTTCGCTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC
AAGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGTGCATG----------
>LTR7d1_chr11_71505505_71505914_h3k27ac_EncodeTxn_SOLO_7down____chr11_7150550571505914____1408
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATGTCC
TCTGTAAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ACT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CTCCACTCC-TGTCTGCCAGAGAACAACCC
CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCTTTCGCTG---CTCTTTTCAGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACCGATGCGAGTGA---------
>LTR7d1_chr2_184168918_184169332_EncodeTxn_SOLO_C_7down___chr2_184168918184169332___1411
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATACCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACGGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTCATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAACCC
CGC-TTTGACTGTAATTTTCCTTTACCTAACCA-AATCTTATAA-----------AACG-
GCCCCACCC-C-T-ATGTCCCTTCGCTGACTCTCTTTTCCGACTCAGCCCTCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGATGCGAGTG----------
>LTR7d1_chrX_43007080_43007491_SOLO_NANOG_44108_SMAD11_SOX2_C_7down___chrX_4300708043007491___1411
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GATATTCCACAACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----TTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAACCC
CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
TTTCACACGGACGCGAGTG----------
>LTR7d1_chr3_21377907_21382955_2230_1_EncodeRepressed_GRO4of7_C_7down___chr3_2138254721382955___1407
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CTTGTGAC---------------------------------------------CTGCACG
TGCACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AACCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAA----CC
CCC-TTCAAGTGTAATTTTCCTTTACCTACCCA-AATCTTGTAA-----------AATG-
GCCCTACCC-T-T-ATCTCCCTTCCCTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GCTGGTCT
CTTCACAGGGCCGCGAGTG----------
>LTR7d1_chr19_46273189_46278852_2961_ZNF534_KAP1_k4me3_TSSflanking_GRO3of7_C_7down___chr19_4627843946278852___1411
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCG--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTTC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GGGAAATTCCTTCTCTTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACCCC-TGCCAGCCAGAGAACAACCC
CCC-TTTGACTGTAATTTTCCTTTACATACCCA-AATCTTGTAA-----------AACG-
GCCCCACCC-C-T-ATCTCCGTTCCCTGACTCTCTTTTCCGACTCAGCCCGCCTGCACCC
AGGTGA-----AG--TAAACAGCCCTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGAGTG----------
>LTR7d1_chrX_116720317_116726712_3022_ZNF534_KAP1_EncodeTxn_NANOG_44108_GRO5of7_GRO6of7_GRO7of7_C_7down___chrX_116726299116726712___1411
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC
CCTGTGAC---------------------------------------------CTGCATG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGCTCTGTTCC-------------------
------------TG------------------CC----------TTAA----CCGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAACCC
CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTCATAA-----------AATG-
GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTTGGACTCAGCCTGCCTGCACCC
ATGTGA-----AA--TAAACAGCCTCGTTGGTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCATACGGATGCAAGTG----------
>LTR7d1_chr7_148309416_148315615_3175_ZNF534_KAP1_EncodeRepressed_GRO5of7_GRO6of7_GRO7of7_C_7down___chr7_148315206148315615___1409
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATC--ATTT
CCTGTGAC---------------------------------------------CTGCATG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTCAT-----------------------
---GACATTCCACTACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCCTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAACCC
CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG-
GCCTCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTTGGACTCAGCCTGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGCAAGTG----------
>LTR7d1_chr11_6801847_6802255_EncodeRepressed_SOLO_7down____chr11_68018476802255____1408
-GTCAGGCCTCTGAGCCCAGG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCATG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------AGTTTCTGCCTTAACTGAT-----------------------
---GATATTCCACCACAAAAGAAATGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCTTGGCTCAA--AAGCTCCTCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GTG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAA---CCC
CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTCATAA-----------AATG-
GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTTGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACTCAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGATGCGAGTGA---------
>LTR7d1_chr3_166500605_166506418_3203_ZNF534_KAP1_EncodeTxn_GRO4of7_C_7down___chr3_166506020166506418___1398
TGTCAGGCCTCTCAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCATG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAATGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGGC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------AAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACTACCC
CCC-TTT------------CCTTTACCTACCCA-AATCCTATAG-----------AATG-
GCTCCACCC-C---GTCTCCCTTCGCTGACTCTCTTTTTGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCTTG--TTT--GGTGGTCT
TTTCACATGGATGTGAGTG----------
>LTR7d1_chr6_86598252_86603901_3127_ZNF534_EncodeTxn_GRO4of7_C_7down___chr6_8660349486603901___1407
TGTCAGGCCTCTGAGCCTAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCATG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAG---TGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCT-GTG--------------
---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAACCT
CCC-TTTGACTGTAATTTTCCTTTACCTATCCA-AATCTTATAA-----------AATG-
GCCCCACCC-C-C-ATCTCCCATTGCTGACTCTCTTTTCAGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAGCAGCCTTGTTGCTCACACAAAGCCTG--TTT--GATGGTCT
CTTCACATGGATGTTAGTG----------
>LTR7d1_chr11_131254535_131260279_3358_ZNF534_KAP1_EncodeTxn_GRO1of7_C_7down___chr11_131259868131260279___1411
TGTCAGGCCTCTGAGCCTAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCATG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAATGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAC----CAACTGGTG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAACCC
CTC-TTTGAATATAATTTTCCTTTACCTACCCA-TATCTTATAA-----------AATG-
GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCAGACTCAGCCTGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTCTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACATGAGTG----------
>LTR7d1_chr21_17899676_17900086_EncodeRepressed_SOLO_NANOG_C_7down___chr21_1789967617900086___1410
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTTTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGGC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCAT-CTGACTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAACCC
CCC-TTTGACTGTAATTTTCCTTTATCTACCCA-AATCTTATAA-----------AATG-
GCCCTACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCAGACTCAGCCTGCCTGCACCC
AGGTGC-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACGCGAGTG----------
>LTR7d1_chr11_83419135_83423556_2442_ZNF534_KAP1_EncodeTxn_GRO4of7_7down____chr11_8341913583419545____1409
-GTCCGGCATCTGAGTCCAAG-----------------------CTAAGCCATCCTATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------AGTTCCTGCTTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGCTCC-------------------
------------TG------------------CC----------TTAA----CTGATGTC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACACC-TGCCCGCCAGAGAACAACCC
CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AATG-
GCCCCACCC-C-T-GTCTCCCTTCGCTGAC--TCTTTTCAGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACACGAGTGA---------
>LTR7d1_chr14_85732437_85738601_3090_ZNF534_k4me3_EncodeRepressed_NANOG_GRO5of7_GRO6of7_GRO7of7_C_7down___chr14_8573819085738601___1411
TGCCAGGCCTTTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------CGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---AACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-TCCCACTCC-TGCCCACCAGAGAACAACCC
CCC-TTTGACCGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AATG-
GCCCCACCT-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCAAATTGACGCGAGTG----------
>LTR7d1_chrX_2850526_2850930_EncodeRepressed_SOLO_NANOG_7down____chrX_28505262850930____1404
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCGTCATATCC
CCTGTGAC---------------------------------------------CTGCATG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTAATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTTCG--------------
---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAACCC
CCC-TTTGACTGTAATTTTCCTTGACCTACCCA-AATCTTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCT
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACG----------------
>LTR7d1_chr12_9962437_9968690_3068_ZNF534_EncodeTxn_GRO4of7_C_7down___chr12_99682709968690___1409
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATGC
CCTATGAC---------------------------------------------CTGCATG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCGTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--CTGAAATTCCTTCTCCTGG--------------
----CTCATCTTGGCTCAA--AAGCTCCCCTAT---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTT--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAACCC
CCC-TTTGA-TGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACA-
GCCCCACCC-C---ATCTCCCTTCGCTGACTCTCTTTGCAGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--TGTGGTCT
CTTCACACGGATGCGAGTG----------
>LTR7d1_chr1_231829672_231835648_3227_ZNF534_EncodeRepressed_NANOG_C_7down___chr1_231835237231835648___1411
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCAAG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TG--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAAAGAACAACCC
CCC-TTTGACTGTAATTTTCCTTTATCTACCCA-AATCTTATAA-----------AACA-
GCGCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCTTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--AGCGGTCT
CTTCACACGGACGCGAGTG----------
>LTR7d2_chr3_35874404_35880025_4481_ZNF534_KAP1_EncodeRepressed_GRO5of7_GRO6of7_GRO7of7_C_7down___chr3_3587966735880025___1357
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAA--CATCATATCC
CTTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GA-------------------------------------------------------
-----------------------------------------------------------A
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--ATGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTC--TGCCCACCAGAGAACAACAC
CCC-TTTGACTGTAATTTTCCTTTATCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCTTTACTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGTGAGTG----------
>LTR7d2_chr1_54020110_54020467_EncodeTxn_SOLO_C_7down___chr1_5402011054020467___1357
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGACC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GA-------------------------------------------------------
-----------------------------------------------------------C
ACT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTC--TGCCCGCCAGAGAACAACCC
CCC-TTTGACTGTAATTTTCCTTTATCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCT--TTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCTTTATTGCTCACATAAATCCTG--TTT--GGTGGTCT
CTTCACACGGATGCGAGTG----------
>LTR7d2_chr21_44341537_44341947_h3k27ac_EncodeRepressed_SOLO_NANOG_C_7down___chr21_4434153744341947___1410
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCACCATGTCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCT--------------------------
------------------GGTTCTCGCCTTAACTGAT-----------------------
---GACATTCCACCATAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATAAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-TCCCACTC--TGCCCGCCAGAGAACAACCC
CCC-TTTGACTATAATTTTCCTTTATCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTCACTGACTCTCTTTTCAGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCTTGATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACACGAGTG----------
>LTR7d2_chr1_48209002_48214821_3046_ZNF534_k4me3_enh_NANOG_44108_C_7down___chr1_4821441248214821___1409
TGTCAGGCCTCTGAGCCTAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------TGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCCGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTTG--------------
----CTCATCCTGGCTCAA--AAGCCCCCCTGC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CTCCACTC--TGCCCGCCAGAGAACAATCC
CCC-TTTGACTGTAATTT-CCTTTATCTACCTA-AATTCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTAGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTAGTCT
CTTCACACAGATGCGAGTG----------
>LTR7d2_chr1_7689481376900387_3290_ZNF534_KAP1_EncodeTxn_NANOG_GRO2of7__chr1_7689997776900387___1410
TGTCAGGCCTCTGAGCCCAAT-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GATTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AATCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CTCCACTC--TGCCCACCAGAGAACAACCC
CCC-TTTGACTGTAATTTTCCTTTATCTACCCA-AATCCTATAA-----------AACA-
GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCAGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCTGTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACACGAGTG----------
>LTR7d2_chr15_94750749_94756464_4470_ZNF534_ZNF90_KAP1_EncodeTxn_GRO3of7_7down____chr15_9475074994751160____1411
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACAGTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGACATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTGC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCTCCAGAGAACAACCC
CCC-TTTGACTGTAATTTTCCTGTATCTACCCA-AATCTTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTGTTTTCGGACTCAGCCTGCCTGCACCC
AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCAAACAGACGCGAGTGA---------
>LTR7d2_chr2_188168688_188174691_3123_ZNF534_weakenh_NANOG_C_7down___chr2_188174286188174691___1405
TGTCAGTCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACA
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTTCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCC-------------------------
------------TG------------------CC----------TTAA----CTGATGGC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTTTCCTGG--------------
----TTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAACCC
CCC-TTTGACTGTAATTTTCCTTTATCTACCCA-AATTTTATAA-----------AACA-
GCCCTACCC-T-T-ATCTCCCTTGGCTGATTCTCTTTTCGGAGTCATCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGAGTG----------
>LTR7d2_chr9_11038673_11039079_enh_SOLO_NANOG_7down____chr9_1103867311039079____1406
-GTCAGGCCTCTGAGCCTAAG-----------------------CTAAGTCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------CGTTTCTGCCTTAACTGGT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGCCCTGTTCC-------------------
------------TG------------------CC----------TTAA----TTGATGAC
GTT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-TCCCACTCC-TGCCCACCAGAGAACAACCC
CTC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTTGCTGACTCTTTTTTCGGACTCGGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACTCG--------------
>LTR7d2_chr5_104031710_104037313_3297_ZNF534_EncodeTxn_7down____chr5_104031710104032118____1408
-GTCAGGCTTCTGAGCTCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGTC--------------------------
------------------GGTTCCTGCCTTAACTGAG-----------------------
---GACATTCCACCACAAAATAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
--T---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTGGTG--------------
---------------------------AC-ATCCACTC--TGCCCACCAGAGAACAACCC
CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATGGTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTTGCTGACTGTCTTTTCTGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACAGAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGTGAATGA---------
>LTR7d1_chrX_16227870_16228276_EncodeRepressed_SOLO_7down____chrX_1622787016228276____1404
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCATATCC
-------C---------------------------------------------CTGCACA
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCTTGTTCC-------------------
------------TG------------------CC----------TGAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCTTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACCCC-TGCCAGCCAGAGAACAA-CC
CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AATG-
GCCCCACCC-C-T-ATCTCCCTTTGCTGACTGTCTTTTTGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGTGAGTGA---------
>LTR7d1_chr8_57941798_57942211_EncodeRepressed_SOLO_C_7down___chr8_5794179857942211___1411
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACA
TACACATCCAGA------------------------------------------------
-----------------------------TGGCT--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGTTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACTTTGTG--------------
---------------------------AC-CCCCACCCC-TGCCAGCCAGAGAACAA-CC
CCC-TTCGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCTGCCTGCAACC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGATGTGAGTG----------
>LTR7d2_chr18_57857373_57857769_EncodeRepressed_SOLO_7down____chr18_5785737357857769____1396
--TCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACA
TACACATCCAGA------------------------------------------------
-----------------------------TAGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAAGTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACCCC-TGCCCGCCAGAGAACAA-CC
CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AATG-
GCCCCACCC-C-T-ATCTCCCTTCGC-------------GGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACGAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGTGCATGA---------
>LTR7d2_chr3_90082984_90086728_1507_1_k4me3_EncodeRepressed_NANOG_7down____chr3_9008298490083400____1410
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACA
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTGC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-CC
CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG-
GCCTCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTTT
CTTCACAGGGATGTGCATGA---------
>LTR7d1_chr6_23029012_23029421_h3k27ac_TSSflanking_SOLO_7down____chr6_2302901223029421____1409
---CAGGCCTCTGAGCCCAAA-----------------------CTAAGCCATCATAACC
CCTGTGAC---------------------------------------------CTGCACA
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------AGTTCCTGCCCTAACTGAT-----------------------
---GACATTCCACCACAAAACAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAATCC
CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AATG-
GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTTTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACGTGAGTGA---------
>LTR7d2_chr11_123865322_123871065_3018_KAP1_EncodeTxn_C_7down___chr11_123870666123871065___1398
TGTCAGGCCTCTGAGCCCA-G-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACA
TACACACCTAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------AGTTCCTGCCTTAACCAAT-----------------------
---GACAGTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AACGTCCCCTGC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAACCC
CAC-TTC----------TTCCTTTACCTACCCA-AATCTTATAA-----------AATG-
GCCCCA-CC-C-T-ATCTCCCTTTGCTGACTGTCTTT-CGGACTCAGCCCGGTTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCGG--TTT--GGCGGTCT
CTTCACACAGACGTCCATG----------
>LTR7d2_chr6_153442518_153442929_h3k27ac_enh_SOLO_NANOG_C_7down___chr6_153442518153442929___1411
TGTCAGGCTTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACA
TACACATCCAGA------------------------------------------------
-----------------------------TGGTC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAATGAAAATGGTCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAACCC
CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCCCTGACTATCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAGACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACGCGCATG----------
>LTR7d1_chr21_2816143428166924_2848_1_k4me3_EncodeRepressed_GRO2of7__chr21_2816143428161842____1407
-GTCAGGCCT-TGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACA
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCAGCCAGAGAACAA-CC
CCC-TTTGACT--AATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCACCACCC-C-T-ATCTCCCTTCACTGACTCTCTTTTCAGACTCAGCCCGCCTGCATCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAATCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGAGTGA---------
>LTR7d2_chr22_3483460834840024_2649_1_k4me3_EncodeTxn_GRO2of7__chr22_3483460834835022____1409
-GTCAGGTCTCTGAGCTCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACA
TACACATCCAGA------------------------------------------------
-----------------------------TGGCT--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCCCAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGTTGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAA-CC
CCA-TTTGACTGTAATTTTCCTTTACCTACCCA-AATATTATAA-----------AACG-
GCCCCACCC-C---ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCATCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACAGGGACGCGCATGA---------
>LTR7d2_chr12_72709003_72714311_2935_1_EncodeTxn_C_7down___chr12_7271395872714311___1350
TGTCAGGTCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACA
TACACTTCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATT---------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAA--AAGTTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACCCC-TACCTGCCATAGAACAA-CC
CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C---ATCTCCCTTCACTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACA-CCTTGTTGCTCATGTAAAGCCTG--TTT--GGTGGTCT
CTTCACAGGGAC-----------------
>LTR7d2_chrX_29975546_29981247_2113_1_EncodeRepressed_7down____chrX_2997554629975946____1400
-GTCAGGCCTCTGAGCCCAAG-----------------------TTAAGCCATCACATCC
CCTGTGAC---------------------------------------------CTGCACA
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAGAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGTC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTC--------------------
--------TCCTGGCTCAA--AAGCTCCCTTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACCCC-TGCCCGCCAGAGAACAA-CC
CCC-TTTGACTGTAATTTTCCTTTATCTACCCA-AATCCTATAA-----------AACA-
GCCCCACCC-C-T-ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATGA---------
>LTR7d2_chrX_30103613_30109253_3199_1_EncodeRepressed_GRO4of7_7down____chrX_3010361330104012____1399
-GTCAGGCTTCTGAGCCCAAG-----------------------CTAAGCCATCGTATCC
CCTGTGAC---------------------------------------------CTGCACA
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTACTGCCTTAACTGAT-----------------------
---GACATTCCTCCAAAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTC--------------------
--------TCCTGGGTCAA--AAGCTCCCTTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACCCC-TGCCCGCCAGAGAACAA-CC
C-C-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGTCGCGCATGA---------
>LTR7d2_chr13_6120568261211279_2425_1_k4me3_EncodeTxn_NANOG_GRO2of7__chr13_6120568261206083____1401
-GTCAGGCCTCTGAGCCTAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACA
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAAGTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTACTGG--------------
----CTCGTCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AG-CCCCACTCC-TGCCCACAAGAGAACAA-CC
CCC-CT---------TTTTCCTTTACCTACCCA-AATTCTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGATGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTA--TTT--GGTGGTCT
CTTTACAGGGACGCGCGTGA---------
>LTR7d1_chr1_112809667112815325_2652_ZNF534_k4me3_enh_wanghigh_GRO2of7__chr1_112809667112810079____1410
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACT
TACACTTCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---CACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTTG----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTGC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCCACCAGAGAACAA-CC
CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACA-
GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCCTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAATCCTG--TTT--GGTGGTCT
CTTCACACGGACGTGAGTGA---------
>LTR7d1_chr2_184759632_184760011_EncodeRepressed_SOLO_NANOG_7int____chr2_184759632184760011____1379
-GTCAGGCCTCTGAGCCCAAG-----------------------CT-------CATATCC
CCTGTGAC---------------------------------------------CTGCACC
TATACATCCAGA------------------------------------------------
-----------------------------TGACC--------------------------
------------------------TGAAGTAACTGAA-----------------------
---GA------ATCACAAAAGAAGTGAAAATGGCCAGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACC-------------------
--------------------------------CCACTCC-TGCCCGCCAGAGAACAA-CC
CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACA-
GCCCCACCT-C-T-ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCATAGGGACGTG--------------
>LTR7d1_chr14_83961579_83961993_h3k27ac_EncodeTxn_SOLO_NANOG_7down____chr14_8396157983961993____1406
-GTCAGGCCTCTGAGACAAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCACA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATCCCTTTTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCAAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTTTG--------------
---------------------------AC-CCCCACCAC-TGCCTGCCAGAGAACAA-CC
CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C---ATCTCCCTTCACTGACTCTCTTTTCGGCCTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGTCTG--TTT--GGTGGTCT
CTTCACACGGACGCGC---A---------
>LTR7d1_chr9_31440339_31440748_EncodeRepressed_SOLO_NANOG_7down____chr9_3144033931440748____1409
-GTCAGGCCTCTGAGCCAAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCAGG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCCGGCTCAA--AAGCTCCCCAAA---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACCCC-TGCCCCCCAGAGAACAA--C
CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C---ATCTCCCTTCACTGACTCTCTTTTTGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGATCT
CTTCACACGGACGTGAGTGA---------
>LTR7d1_chr1_35390272_35390664_h3k27ac_enh_SOLO_NANOG_C_7down___chr1_3539027235390664___1391
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTCTGAC---------------------------------------------CTGCAGG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCAACACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACTTTGTG--------------
---------------------------AC-CCCCACTCC-TGCTCGCCAGAGAACAA-CC
CCC-CT---------TTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG-
GCCCCACCC-C---ATCTCCCTTCACTGACT--CTTTTCAGACTCAGACCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGAC-----------------
>LTR7d1_chrX_147138030_147138442_EncodeTxn_SOLO_7down____chrX_147138030147138442____1408
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCATA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAGAAGAAGTGAAAATGGTCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----TTCTTCCTGGCTCAA--AAGCTCTCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----GACCTTGTG--------------
---------------------------AC-CCCCACCCT-TGCCCGCCAGAGAACAA-CC
CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTACAA-----------AATG-
GCCCCACCC-C---ATCTCCCTTCACTGACTCTCTTTTAGGACTCAGCCCACCTGCACCC
AGATGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGGCT
CTTCACACGGACACGAGTG----------
>LTR7d1_chr9_10884982_10890707_2892_KAP1_EncodeRepressed_GRO5of7_GRO6of7_GRO7of7_7down____chr9_1088498210885376____1394
-GCCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGCGAC---------------------------------------------CTGCATG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCT--------------------------
------------------GGTTCTTGCCTTAACTGAT-----------------------
---GACATTCTACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCAACCC-TGCCCCGCAGAGAACAA-CC
CTC-TT----------TTTCCTTTACCTACCCA-AATCTTATAA-----------AACA-
-----ACCC-C-T-ATCTCCCTTAGCTGACTCT--TTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGTTCACACAAAGCCTG--TTT--AGTGGTCT
CTTCACATAGACGCGCGTGA---------
>LTR7d1_chr6_38921759_38922167_EncodeRepressed_SOLO_C_7down___chr6_3892175938922167___1408
TGTCAGGTCTCTGAGCCAAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCATG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTTTCCTGG--------------
----CTCATCCTAGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACCCC-TGCCCGCCAGAGAACAA-CC
CCT-TT----------TTTCCTTTACCTACCTA-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-GTCTCCCTTCGCTGACTCT--TTTCGGACTCAGCTCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGCGCGTG----------
>LTR7d1_chr12_87907290_87912900_2780_1_EncodeTxn_GRO5of7_GRO6of7_GRO7of7_C_7down___chr12_8791249087912900___1408
TGTCAGGCCTCTGAGCCAAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCGTA
TACACATCCAGA------------------------------------------------
-----------------------------TGGCT--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGGAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTTTCCTGG--------------
----CTCCTCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCCTGTG--------------
---------------------------AC-CCCCACCCC-TGCCCACCAGAGAACAA-CC
CCT-TT----------TTTCCTTTACCTACCCA-AATCCTATAA-----------AACA-
GCCCCACCC-T-T-ATCTCCCTTCACTGACTCT--TTTCGGACTCAGCCTGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGAGAGTG----------
>LTR7d1_chr15_24685360_24691027_2990_1_k4me3_EncodeTxn_C_7down___chr15_2469062724691027___1399
TGTCAGGCCTCTGAGCCTAAG-----------------------CTAAGCCATCACATCC
CCTGTGAC---------------------------------------------CTGCATG
TATGCATCCAGA------------------------------------------------
-----------------------------TGGC---------------------------
-----------------------CTGCCTTAACTGAT-----------------------
---GA------TCCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAACTCCCCCGC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACCCC-TGCCTGCCAGAGAACAA-CC
CCC-TT----------TTTCCTTTACCTACCCA-AATCTTATAA-----------AACG-
GCCCCACCC-C---ATCTCCCTTTGCTGACTCTCTTTTTGGACTCGGCCCGCCTGCACCC
AGGTGA-----AA--TAAGCAGTCTTGTTGCTCACAGAAAGCCTG--TT---GGTGGTCT
CTTCACACAGACACGAGTG----------
>LTR7d1_chr1_112820145112826054_1748_ZNF534_KAP1_k4me3_enh_NANOG_wanghigh_GRO2of7__chr1_112825661112826054___1393
TGTCAGGCCTCTGAGC----------------------------CCAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCATG
TATGCATCCAGG------------------------------------------------
-----------------------------TGGC---------------------------
-----------------------CTGAAGTAACTGAA-----------------------
---GA------ATCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTAG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCTACCAGAGAACAA-CT
CCT-TT----------TTCCCACTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCCTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAGCAGCCTTGTTGCTCACACAAAACCTG--TTT--GGTGGTCT
CTTCACAGCAACGCGAATG----------
>LTR7d1_chr4_83234495_83234897_EncodeRepressed_SOLO_7down____chr4_8323449583234897____1389
-GTCAGGACTCTGAGCCTAAG-----------------------CTAAGCCATCATATCC
CTAGTGAC---------------------------------------------CTGCATG
TATACATCCAGA------------------------------------------------
-----------------------------TGGC---------------------------
-----------------------CTGCCTTAACTGGT-----------------------
---GA------GCCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCTC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACCCC-TGCCCACCAGAGAAAAA-CC
CCC-TT----------TTTCCTTTACCTACCCA-AATCTTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCCCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGTGCGTGA---------
>LTR7d1_chrY_13097143_13097544_SOLO_7down____chrY_1309714313097544____1401
-GTGAGGTCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCATG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCT--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAT
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--CTGAAATTCCTTCTCTGGG--------------
----CTCATCCTGGCTCAA--AAGCTTCCCAGC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCGTGTG--------------
---------------------------AC-CCCCACCCC-TGCCAGCCAGAGAACAA-CC
CCT-CT----------TTTCCTTTACCTACCCA-AATCTTATAA-----------AATG-
GCCCCACCC-C-T-ATCTCCTTCCACTGACTCTCTTTTCCGACTCAGCCCGCCTGTACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGACTG--TTT--GGTGGTCT
CTTCACACAGACATGAGTGA---------
>LTR7d1_chr2_126382198_126382599_EncodeRepressed_SOLO_C_7down___chr2_126382198126382599___1400
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCGGTGAC---------------------------------------------CTGCACG
TGCACATCCAGA------------------------------------------------
-----------------------------TGGCT--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACACTCCACCACAAAAGAAGTGACAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CAGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATTCTGGCTCAA--AAGCTCCCCTGC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACCCC-TGCCCGCCAGAGAACAA-CC
CCC-TT----------TTTCCTTTACCTACCCA-AATCTTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCACTAACTCTCTTTTCAGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACACGAGTG----------
>LTR7d1_chr14_48278478_48278865_EncodeTxn_SOLO_C_7down___chr14_4827847848278865___1374
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGG----------------------------
--------------------------CCCTAACTGAA-----------------------
---GA------ATCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATTCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-TCCCACCCC-TGCCCACCAAAGAACAA-C-
CCC-TT----------TTTCCTTTACCTACCCA-AATCCTATAT-----------AACA-
GCCGCACCC-C---GTCTCCCTTCGCTGACTCTCTTTTCAGACTCAGCCCACCTGTACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
ATTCACATGGA------------------
>LTR7d1_chr9_102729838_102730248_EncodeRepressed_SOLO_C_7down___chr9_102729838102730248___1399
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCAGG
TACACATTCAGA------------------------------------------------
-----------------------------TGGTC--------------------------
------------------TGTTCCTGCCTTAACTGAT-----------------------
---GACTTTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCATGGCTCCA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CTTCACCCC-TGCCCACCAGAGAACAA-CC
CCC-TT----------TCTCCTTTA-CTACCCA-AATCCTATAA-----------AATG-
GCCCCACCC-C-T-ATCTCCCCTCGCTGACTCTCTTTTCAGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGCAGTCT
GTTCAGATGGACACGAGTG----------
>LTR7d1_chr5_166740058_166744650_3099_ZNF534_EncodeTxn_GRO5of7_GRO6of7_GRO7of7_C_7down___chr5_166744251166744650___1398
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCAAG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCG--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----ATGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCATCCC-TGCCCGCCAGAGAACAA-CC
CCC-TC----------TTTCCTTTACCTACCCA-CATCTTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTTGCTGAC--TCTTTTCAGACTCAGCCCATCTGCACCC
AGGTGA-----AA--TAAACAGCCTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGCGAGTG----------
>LTR7d1_chr8_57874485_57874894_EncodeRepressed_SOLO_C_7down___chr8_5787448557874894___1409
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCATG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTTCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACCCC-TGCCAGCCAGAGAACAC-CC
CCC-TT----------TTTCCTTTACCTACCCA-AATCTTATAA-----------AACG-
GCCCCACCC-C---ATCTCCCTTCGCTGACTCGCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAATAGGCTTGCTGCTCACACAAAGCGTG--TTT--GGTGGTCT
CTTCACACAGGCGCGAGTG----------
>LTR7d1_chr1_182445466_182445875_EncodeTxn_SOLO_C_7down___chr1_182445466182445875___1409
TGTCAGGCTTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACTTTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCCTTTTCTGG--------------
----CTCATCCTGGCTCAA--AA-CTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACCCC-TGCCCGCCAGAGAACAC-CC
CCC-TT----------TTTCCTTTACCTACCCA-AATCTTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCACTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTTCTCACACAAAGCCTG--TTT--AGTGGTCT
CTTCACACGGACGCGAGTG----------
>LTR7d1_chr3_97272463_97277550_2549_1_k27ac_weakenh_C_7down___chr3_9727715997277550___1380
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGA----------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCG--------------------------
------------------GGTTCCTGCCTTAACTAAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GCGAAATTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACCCC-TTCCCGCCAGAGAACAC-CC
CCC-TT----------TTTCCTTTACCTACCCA-AATCTTATAA-----------AATG-
GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCATCTGCACCC
AGGTGA-----AA--TAAATAGCCTTGTTGCTCACACAAAGCCTG--T------------
-----------------------------
>LTR7d1_chr4_172955660_172962312_3038_ZNF534_EncodeRepressed_C_7down___chr4_172961900172962312___1409
TGTCAGGCCTCTGAGCCAAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TG--GTGAAATTCATTTTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACCCT-TGCCAGCCAGAGAACAC-CC
CCC-TT----------TTTCCTTTACCTACCCA-AATCCTATAA-----------AATG-
GCACCACCC-C---ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
TGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCTTG--TTT--GGTGGTCT
CTTCACACAGACATGCGTG----------
>LTR7d1_chr3_173155218_173161544_1581_ZNF534_EncodeTxn_C_7down___chr3_173161127173161544___1410
TGTCAGGCCTCTGAACCAAAG-----------------------CTAAACCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGTC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACAACAAAACAAGTGAAAATGTCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACCCC-TGCCAGCCAGAGAACAC-CC
CTC-TT----------TTTCCTTTACCTACCCA-AATCCTATAA-----------AATG-
GCCCCACCC-C-T-ATCTCCCTTCCCTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCT
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGATGCATGTG----------
>LTR7B_chr1_2ltr_int_fr_17__chr1_1356084113561228_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACAGAAG------------
------------------------------------------------------------
----------ATCCACAAAATAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCCGCCCCACC
CTAACTGAT------ACGAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATA--------TT-----------------------------------
------------------------CTCCCCCGCCCTTAAG--------------AAGGTA
CTT-------------------------------TGTAA--T------------------
-----------------------------------------------ATTCTC-C-----
---------------ACCCTT---------GAGAATGAACTTTATA--------------
------------------------------------------------------------
-----------------------CGCCTATCCC-AAACCTATAAGAACTATTGATAAT--
-------CC-C---ACCACCCTTTGCTGACTCCTTTTTCGGACTCAGCCCGCCTGCACCT
AGGTGA-----AA--TAAACAGCC-TGTTGCTCACACAAAGCCTGT-TT---GGTGGTCT
CTTCATACAGACGCACGTGA--CA-----
>LTR7B_chr22_2ltr_int_fr_965__chr22_3906256039062970__
-------CCTCTGAGCTGAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACA
TATACATCCACC------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAATAAGTGAAAATAAC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTTTTCCTGCCCCACC
CTAACTGAT------ATGAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATA--------TT-----------------------------------
------------------------CTCCCCCGCCCTTAAG--------------AAGGTA
CTT-------------------------------TGTAA--T------------------
-----------------------------------------------ATTCTC-CCC---
-------------AGACTCTT---------GAGACTGTACTTTGTA--------------
------------------------------------------------------------
-----------------------CGCCTATCCC-AAACCTATAAGAACTAATGATGAT--
-------CC-C---ACCACCATTTGCTGAGTCCTTTTTCGGACTCAGCCCGCCCACACCC
AGATGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TT---GGTGGTCT
CTTCACACAGACGTGCGTGA---------
>LTR7B_chr10_2ltr_int_fr_152__chr10_100380920100381305_+_
-GTCAGGCCTCTGAGCCCAAA-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCATG
TATACATACAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGAGATTTGTTCCTGCCCCACC
CTAACTGAT------ACGAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATA--------TT-----------------------------------
------------------------CTCCCCCGCCCTTAAG--------------AAGGTA
CTT-------------------------------TGTGA--T------------------
-----------------------------------------------ATTCT--CCC---
---------------GCCCTT---------GAGAATGTACTTTGTA--------------
------------------------------------------------------------
-----------------------CGCCTATCCC-AAACCTATAAGAACTAATGATAAT--
-------CC-C---ACCACCCTTTGTTGACTCCTTTTT-AGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TATACAGCCTTGTTGCTCACACAAAGCCTGT-TT---GGTGGTTT
CTTCACACGGATGCATGTGA--CA-----
>LTR7B_chr2_Sltr_795__chr2_177902063177902451_+_
-GTTAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATGATATCC
CCTGTGAC---------------------------------------------TTGCAAG
TATACATCCAGA------------------------------------------------
-----------------------------TGGTCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC
CTAACTGAT------ACGAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATA--------TT-----------------------------------
------------------------CTCCCCCGCCCTTAAG--------------AAGGTA
CTT-------------------------------TGTAA--T------------------
-----------------------------------------------ATTCTC-CCC---
---------------GCCCTT---------AAGAATGTACTTTGTA--------------
------------------------------------------------------------
-----------------------TGCCTATCCC-AAACCTATAAGAAACAATGATAAT--
-------CC-C---ACCACCCTTTGCTGACTCCTTTTTCAGACTCAGCCTGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TT---GGTAGTCT
CTTCACACGGATGTGTGTGA--CA-----
>LTR7B_chr18_Sltr_623__chr18_30233433023765__
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGCCAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTTATTTGTTTCTGCTCCACC
----CTGAT------ACGAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATA--------TT-----------------------------------
------------------------CTCCC-CACCCTTAAG--------------AAGGTA
CTT-------------------------------TGTAA--T------------------
-----------------------------------------------ATTCCC-CCC---
---------------GCCCTT---------AAGAATGTACCTTGTA--------------
------------------------------------------------------------
-----------------------CACCTATCCC-AAACCTATAAGAAGTCATGATAAT--
-------CC-C---ACCACCCTTTGCAGACTCCTTTTTCGGACTCAGCCCATCTGCACCC
AGGTGA-----GA--TAAACAGCCTTGTTGCTCACACAAAGCCTGT-TT---GGTGATCT
CTTCACATGGACGCGTGTGA--C------
>LTR7B_chr4_Sltr_1233__chr4_4253270742533093_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------TTGCATG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATGCACAA---AAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CGGATGAC
ATT---------------------------------------------------------
-------------------------------CCACTATTGTGATTTGTTCCTGCCCCACC
CTAACTGAT------ACGAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATA--------TT-----------------------------------
------------------------CTCCCTCACCCTTAAG--------------AAGGTA
CTT-------------------------------TGTAA--T------------------
-----------------------------------------------ATTCCC-CCC---
---------------GCCCTT---------AAGAATGTACTTTGTA--------------
------------------------------------------------------------
-----------------------CGCCTATCCC-AAACCTATGAGAACTAATGATAAT--
-------CC-C---ACCACCCTTTGCTGACTCCTTTTTTGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTGT-TT---GGTGATCT
CTTCACACGGACGTGCGTGA--CA-----
>LTR7B_chr4_2ltr_int_fr_1175__chr4_145256564145256982__
TGTCAGGCCTCTGACCCCAAG-----------------------CTAAGCCATCATATTC
CCTGTGAC---------------------------------------------CTGCAAG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCATAAAAGAAGTGAAAATAAC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC
CTAACTGAT------ATGAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATA--------TT-----------------------------------
------------------------CTCCCCTGCCCTTAAG--------------AAGGTA
CTC-------------------------------TGTGA--T------------------
-----------------------------------------------ATTATC-CCC---
---------------GCCTTT---------GAGAATGTACTTTGTA--------------
------------------------------------------------------------
-----------------------CGCCTATCCC-AAACCTATAAGAATTAATGATAAT--
-------CC-C---ACCACCCTTTGCTGACTCCTTTTTTGGACGCAGCCTGCCTGTACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGTCTGT-TT---GGTGGTCT
CTTCACATGGACACACATGA--C------
>LTR7B_chr17_Sltr_597__chr17_3991741439917823_+_
-GTCAGGCCTCTGAACCCAAG-----------------------CTAAGCCATCATATTC
CCTGTGAC---------------------------------------------CTGCATG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAATGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC
CT----GAT------ACAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATA--------TT-----------------------------------
------------------------CTCCCCTGCCCTTAAG--------------AAGGTA
CTT-------------------------------TGTAA--T------------------
-----------------------------------------------ATT-TC-TCC---
---------------ACCCTT---------GAGAATGTACTTTGTA--------------
------------------------------------------------------------
-----------------------AGCCTATCCC-AAACATATAAGAACTAATGATAAT--
-------GC-C---ACCACCCTTTGCTGACCCCTTTTTTGGACTCAGCTTGCCTGCACC-
-------------------CAGCCTTGTTGCTCATATAAAGCCCGT-TT---CGTGGTCT
CTTCACATGGACGCACGTGA--CA-----
>LTR7B_chrX_Sltr_1835__chrX_8060430280604687_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACT
TACACATCCAGA------------------------------------------------
-----------------------------TGGCCGGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAGGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCACTGTGATTTGTTCCTGCCCCACC
CTAACTGAT------ATGAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATA--------TT-----------------------------------
------------------------CTCCCCCGCCCTTAAG--------------AAGGTA
CTT-------------------------------TGTAA--T------------------
-----------------------------------------------ATTCTC-CCC---
---------------GCCCTT---------AAGAATGTATTGTGTA--------------
------------------------------------------------------------
-----------------------CTCCTATCCC-AAACCTAT----ACTAATGATAAT--
-------CC-C---ACCACCCTTTGCTGGCTCCTTTTTTGGACTCAGCCTGCCTGCACCC
AGGTGA-----AA--TAAACTGCCTTGTTGCTCACGCAAAGCCTGT-TT---GGTGGTCT
CTTCACACGAACGCGTGTGA--CA-----
>LTR7B_chr7_2ltr_int_fr_1531__chr7_143105117143105505_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCATG
TATACAGCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------GTCCACAAAAGAAGGGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC
CTAACTGAT------AAGAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATA--------TT-----------------------------------
------------------------CCCCCCCGCCCTTAAG--------------AAGGTA
CTT-------------------------------TGTAA--C------------------
-----------------------------------------------ATTCTC-CCC---
---------------ACCCTT---------AAGAATATACTTTGTA--------------
------------------------------------------------------------
-----------------------CGCCTATCCC-AAACCTATAAGAACTAATGATAAT--
-------CC-C---ACCACCCTTTGCTGACTCCTTTTTTGGACTCAGCCTGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGCTGCTCACACAAAGCCTG--TT---GGTGGTCT
CTTCACACAGACGTGCGTGA--CA-----
>LTR7B_chr15_Sltr_519__chr15_8333080883331264_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCCCG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATG---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC
CTAGCTGAT------ACGAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATA--------TT-----------------------------------
------------------------CTCCCCAGCCCTTAAG--------------AAGGTA
CTT-------------------------------TGTAA--T------------------
-----------------------------------------------ATTCTC-CCC---
-------------ACGCCCTT---------GAGAATGTACTTTGTA--------------
------------------------------------------------------------
-----------------------CGCCTATCCC-AAACCTATAAGAACTAATGATAAT--
-------CC-C---ACCACCCTTTGCTGACTCCTTTTTCGGACTTAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTGT-TT---GGTGGTCT
CTTCACACGGACATGCGTGA--CA-----
>LTR7B_chr3_Sltr_1084__chr3_3958648939586872__
TGTCAGGCTTCTGAGCCCAAA-----------------------CTAAGCCATCATATCC
CCTGTGAT---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATACACAAAAA-AGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGGTTTGTTCCTGCCCCACC
CTAACTGAT------AC-AT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATA--------TT-----------------------------------
------------------------CTCCCCGACCCTTAAG--------------AAGATA
CTT-------------------------------TGTAA--T------------------
-----------------------------------------------ATTCTC-CCC---
---------------GCCCTT---------TAGAATGTACTTAGTA--------------
------------------------------------------------------------
-----------------------CGCCTATCCC-AAACCTATAAGAACTAATGATAAT--
-------CC-C---ACCACCCTTTGCTGACTCCTTTTTCTGACTCAGCCCGCCTGCACC-
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTGT-TT---GGTGGTCT
CTTCACACAGATGCGTGTGA--C------
>LTR7B_chrX_Sltr_1782__chrX_1621687316217254__
TGTCAGGCCTCTGAGCCCAAG-----------------------CTCAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCATG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACGGAAG------------
------------------------------------------------------------
----------ATCCACAAAATCACTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC
----CTGAT------AC-AT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATA--------TT-----------------------------------
------------------------CTCCCCTGCCCTTAAG--------------AAGGTA
CTT-------------------------------TGTAA--T------------------
-----------------------------------------------ATTCTC-CCC---
---------------GCCCTT---------GAGAATGTACTTTGTA--------------
------------------------------------------------------------
-----------------------CGCCTATCCC-AAACCTATAAGAACCAGTGATAAT--
-------CC-C---ACCACCCTTTGCTGACTCCTTTTTCGGACTCAGCCTGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTAACACAAAGGCTGT-TT---GGTGGTCT
CTTCACACAGATGCGTGTGA--C------
>LTR7B_chr8_2ltr_int_fr_1590__chr8_109301077109301497_+_
-GTCAGGTCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TATGCATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAACAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAGAATAGT--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCACTGTGATTTGTTCCTGCCCCACC
CTAACTGAT------AGGAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATA--------TT-----------------------------------
------------------------CTCCCCGATCCTTAAG--------------AAGGTA
CTT-------------------------------TGTAA--T------------------
-----------------------------------------------ATTCTC-CCC---
-------------GCGCCCTT---------AAGAATGTACTTTGTA--------------
------------------------------------------------------------
-----------------------CACCTATCCC-AAACCT-TAAGAACTAATGATAAT--
-------CC-C---ACCACCCCTTGCTGACTCCTTTTTCGGACTCAGCTCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGTTCACACAAAGCCTGT-TT---GGTGGTCT
CTTTACACAGATGCGCCAGA--CA-----
>LTR7B_chr17_Sltr_594__chr17_3163208731632458_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
TCTGTGAC---------------------------------------------C------
---------AGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAATAAGTGAAAATAGC--------------------------
---------------------------------C----------TGAA----CTGATGGC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC
CTAACTGAT------ACAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATA--------TT-----------------------------------
------------------------CTCCCCCACCCT------------------------
------------------------------------------------------------
------------------------------------------------------------
---------------ACCCTT---------GAGAATGTCCTTTGTA--------------
------------------------------------------------------------
-----------------------CGCCTATCCC-AAACCTGTAAGAACTAATGATAAT--
-------CC-C---ACCACCCTTTGCTGACTCCTTTTTCGGACTCAGCCCACCTGCACCC
AGTTGA-----AA--TAAACAGCCTTGTTGCTCACAAAAAGCCTGT-TT---GGTGGACT
CTTCACACAGATGCGCATGA--CA-----
>LTR7B_chr7_Sltr_1575__chr7_8832029088320683_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCCGTAAC---------------------------------------------CTGCATG
TATATATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGCAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC
CTAACTGAT------ACAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATA--------TT-----------------------------------
------------------------CTCCCCCACCCT------------------------
------------------------------------------------------------
------------------------------------------------------------
---------------GCCCTT---------GAGAATGTACTTTGTA--------------
------------------------------------------------------------
-----------------------CGCCTATCCC-AAACCTATAAGAACTAATGATGAT--
-------CC-C---ACCACCCTTTGCTGACTCCTTTTTCGGACTCAGCCCGCCTGCACCC
AGATGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTGT-TT---GGTGGACT
CTTCACACAGACACGCATGA--CA-----
>LTR7B_chr8_Sltr_1589__chr8_108420632108421085__
TGTCAGGCCTCTGAGCCCAAG-----------------------TGAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACA
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCTGCAAAATAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTGCC-CACC
TTAACTGAT------AC-AT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATA--------TT-----------------------------------
------------------------CTCCCCTGCCCTTAAA--------------AAGATA
CTT-------------------------------TGTAA--T------------------
-----------------------------------------------ATTCTC-CCC---
-------------ACACCCTT---------AAGAATGTACTTTGTA--------------
------------------------------------------------------------
-----------------------CACCTATCCC-AAACCTATAAGAACTAATGATAAT--
-------CT-C---ACCACCCTTTGCTGACTCCTTTTTCGGGTTCAGCCCCCCTGCACCC
AGGTGA-----AA--TAAAAAGCCTTGTTGCTCACACAAAGCCTGC-TC---A-TGGTCT
CTTTACACAGATGTGCATGA--C------
>LTR7B_chr11_Sltr_243__chr11_3777420337774621_+_
-GTCAGGCTTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CATGTGAC---------------------------------------------CTGCACT
TATATATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAACAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCA---TGATTAGTTCCTGCCCCACC
CTAACTGAT------ACGAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATA--------TT-----------------------------------
------------------------CTCCCCCGCCCTTAAG--------------AAGGTA
CTT-------------------------------TGTAA--T------------------
-----------------------------------------------ATTCT--CCC---
-------------ACACACTT---------AAGAATGTACTTTGTA--------------
------------------------------------------------------------
-----------------------CACCTATCCC-AAACCTATGAGAACTAATGATAAT--
-------CC-C---ACCACCCTTTGCTGACTCCGTTTTTGGACTCAGCCCGCCTACACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTTACACAAAGCCTGC-TT---CGTGGTCG
CTTCACACAGATGCGCGTGA--CA-----
>LTR7B_chr10_Sltr_189__chr10_60080346008421_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------TTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC
CTAACTGAT------ACGAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATG--------TT-----------------------------------
------------------------CTCCCCTGACCTTAAG--------------AAGGTA
CTT-------------------------------TGTAA--T------------------
-----------------------------------------------ATTCTC-CCC---
---------------ACCCTT---------GTGAATGTACTTTGTA--------------
------------------------------------------------------------
-----------------------TGCCTATCCC-AAATCTATAAGAACTAATGATAAT--
-------CC-C---ACCACCCTTTGCTGAATCCTTTTTCGGACTCAGCCCGCCCGCACCT
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TT---GGTGGTCT
CTTCACACGGATGCGTGTGA--CA-----
>LTR7B_chr11_Sltr_280__chr11_9387936193879814_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAT---------------------------------------------CTGCACA
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAA------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCATGATTGTGATTTGTTCCTGCCCCACC
CTAACTGAT------ACGAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATA--------TT-----------------------------------
------------------------CTCCCCCACGCTTAAG--------------AAGGTA
CTT-------------------------------TGTAA--T------------------
-----------------------------------------------ATTCTC-CCC---
---------------ACGCTT---------GAGAATGTCCTTTGTA--------------
------------------------------------------------------------
-----------------------TGCCTATCCC-AAACCTATAAGAACTAATGATTAT--
-------CC-C---ACCACCCTTTGCTGACTCCTTTTTCGGACGCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TT---GGTTGTCT
CTTCACATGGATGCACGTGA--CA-----
>LTR7B_chr3_Sltr_1023__chr3_155021306155021691__
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCTATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGGAG------------
------------------------------------------------------------
----------ATCCACAAAATAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC
CTAACTGAT------ATGAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATA--------TT-----------------------------------
------------------------CTTGCCCGCCCTTAAG--------------AAGTTA
CTT-------------------------------TGTAA--T------------------
-----------------------------------------------ATTCTC-ACT---
---------------GCCCTT---------GAGAATGTACTTTGTA--------------
------------------------------------------------------------
-----------------------TGCCTATCCC-AAACCTGTAAGAACTAATGATAAT--
-------CC-C---ACCACCCTTTGCTGACTCCTTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TT---GGTGGTCT
CGTCACACGGATGCATGTGA--C------
>LTR7B_chr5_Sltr_1360__chr5_6292871262929099_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGAATG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAATAAGTGAAAATAGT--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC
CTAACTGAT------ATGAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATA--------TT-----------------------------------
------------------------CTGCCCCACCCTTAAG--------------AAGGTA
CTT-------------------------------CGTAA--T------------------
-----------------------------------------------ATTCTC-TCC---
---------------ACCCTT---------AAGAAGGTGCTTTGTA--------------
------------------------------------------------------------
-----------------------TGCCTATCCC-AAACCTATAAGAACTAATGATAAT--
-------CC-C---ACAACCCTTTGCTGACTCCTTTTTCGGACTCAGCCCCCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TT---GGTGATCT
CTTCACATGCATGCATGTGA--CA-----
>LTR7B_chr5_2ltr_int_fr_1283__chr5_115650820115651207_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CAAAGCCAGCATATGC
CCTGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGACCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGAGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTGCCCCATC
CTAACTGAC------ATGAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATA--------GT-----------------------------------
------------------------CTCCCCTGCCCTTAAG--------------AAGGTG
CTT-------------------------------TGTAA--T------------------
-----------------------------------------------ATTCTC-CCC---
-------------AG-CCCTT---------AAGAATGTACTTTGTA--------------
------------------------------------------------------------
-----------------------TGCCTATCCC-AAACCTATAAGAACTAATGATAAT--
-------CC-T---ACTACCCTTTGCTGACTTCTTTTTTGGACTCAGCCCGCCGGCACCC
AGGTGA-----AA--TAAACAGCCTTATTGCTCACACAAAGCCTGC-TT---GGTGCTCT
CTTCACACAGACGCGTGTGA--CA-----
>LTR7B_chr11_Sltr_252__chr11_6082375760824299_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATTTTC
CCTGTGAC---------------------------------------------CTGCATG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGT--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC
CTAACTGAC------ACAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATA--------TT-----------------------------------
------------------------CTCCCCTGCCCTTAAG--------------AAGGTA
CTT-------------------------------TGTAA--T------------------
-----------------------------------------------ATTTAC-CCT---
-------------A--CCCTT---------AAGAAGGTACTTTGTT--------------
------------------------------------------------------------
-----------------------CGCCTATCCC-AAACCTGTAAGAACTAATGATAAT--
-------CC-C---ACCACCCTTTACTGACTCCTTTTTCGGACTCAGCCCACCTGCACCT
GGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTGT-TT---GATGGTCT
CTTCACACGGACGCGCATGA--CA-----
>LTR7B_chr2_Sltr_854__chr2_3473677334737161_+_
-GTCAGGCCTCTGAGTCTAAG-----------------------CTAAGCCATCGTATCC
CCTGTGAC---------------------------------------------ATGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC
CTAACTGAT------ACGAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATA--------TT-----------------------------------
------------------------CTCCCCTGCCCTTAAG--------------AAGGTA
CTT-------------------------------TGTAA--T------------------
-----------------------------------------------ATTTTC-CCC---
-------------A--CCCTT---------GAGAATGTACTTTGTA--------------
------------------------------------------------------------
-----------------------CGCCTATCCC-AAATCTATAAGAACTAATGATAAT--
-------CC-C---ACCACCCTTTGCTGACTCCTTTTTTGGACTCAGCCCACCTGCGCCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTGT-TT---GGTGGTCT
CTTCACATGGACGCGCATGA--CA-----
>LTR7B_chr16_Sltr_fr_531__chr16_1026042210260806__
-GTCAGGTCCCTGAGCCCAAG-----------------------CTAAGCCATCGTATCC
CCTGTGAC---------------------------------------------CTGCACG
TATATATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------AGCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC
CTAACTGAT------AC-AC----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATA--------TT-----------------------------------
------------------------CTCCCCCGCCCTTAAG--------------AAGGTA
CTT-------------------------------TGTAA--T------------------
-----------------------------------------------ATTCTC-CCC---
-------------G--CCCTT---------AAGAATATACTTTGTA--------------
------------------------------------------------------------
-----------------------CGCCTATCCT-AAACCTA-AAGAACTAGTTATAAT--
-------CC-C---ACCAGCCTTTGCTGACTCCATTTT-GGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTGT-TT---GATGGTCT
CTTCACACGGACGCGTGTGA--C------
>LTR7B_chr1_2ltr_int_fr_99__chr1_3790781537908201_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCATG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAACTGAAAACAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC
CTAAGTGAT------AGGCT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATG--------TT-----------------------------------
------------------------CTCCCCCGCCCTTAAG--------------AAGGTA
CTT-------------------------------TGTAA--T------------------
-----------------------------------------------ATTCTC-CCC---
-------------CG-CCCTT---------AAGAATGTACTTTGTA--------------
------------------------------------------------------------
-----------------------CACCTATCCC-AAACGTATAAAAACTAATGATAAT--
-------CC-C---ACCAACCTTTGCTGACTCCTTTCTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCCTGTTGCTCACACAAAGCCTG--TT---GGTGGTCT
CTTCACAAGGATGCGTGTGA--CA-----
>LTR7B_chrY_2ltr_int_fr_1873__chrY_1005337010053754__
TGTCAGATCTCTGAGCCCAAG-----------------------CTAAGTCATCATATCA
CCTGTGAC---------------------------------------------CTGCAAG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTGCTGCCCCACC
CTAACTGAT------ATGAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATA--------TT-----------------------------------
------------------------CTCCCTCTCCCTTGAG--------------GAGGTA
CTT-------------------------------TGTAA--T------------------
-----------------------------------------------ATTCTC-CCC---
-------------CG-CCCTT---------AAGAAGGTACTTTGTA--------------
------------------------------------------------------------
-----------------------CACCTATCCC-AAACCTATAAGAACTAATGATAAT--
-------CC-C---ACAACCCTCAGCTGACTCCTTTTTCAGACTCA----GCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TT---GGTGGTCT
CTTCACACGGACATGCATGA--C------
>LTR7B_chr6_Sltr_fr_1460__chr6_4337019843370576_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTATGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAGGCAACTGAAG------------
------------------------------------------------------------
----------AGCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC
CTAACTGAC------AGGAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATA--------TT-----------------------------------
------------------------CTCCCCCTCCCTTAAG--------------TAGGTG
CTT-------------------------------TGTAA--T------------------
-----------------------------------------------ATTCTC-CCC---
-------------CG-CCCTT---------AAGAATGTACTTTGTA--------------
------------------------------------------------------------
-----------------------CACCTATCCC-AAACCTATAAGAACTAATGATAAT--
-------TC-C---ACCACCCTCTGCTGACTCCTTTTTCGGACTCAACCCGCCTGCACCC
AGGTAA-----GA--TAAACAGCCTTGTTGCTCACACGAAGCCTG--TT---GGTGGTCT
CTTCACACG--------------------
>LTR7B_chr10_2ltr_int_fr_177__chr10_3213846432138852__
TGCCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTAAC---------------------------------------------CTGCATG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATTCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTGCCCTACC
CTTACTGAT------AC-AT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACA--------TT-----------------------------------
------------------------CTGCCCCACCCTTAAG--------------AAGGTA
ATT-------------------------------TGTAA--T------------------
-----------------------------------------------ATTCTC-CCC---
-------------AG-CCCTT---------AAGAAGGTACTTTGTA--------------
------------------------------------------------------------
-----------------------TGCCTATCCC-AAACCTATAAGAACTAATGATAAT--
-------CC-C---ACCACCCTTTGCTGACTCCTTTTTTGGACTCAGCCTGCCTGCACCC
AGGTGA-----AA--TATACAGCCTTGTTGCTCACACAAAGCCTG--TT---GGTGGTCT
CTTCACACGGACCCGCGTGA--C------
>LTR7B_chr4_2ltr_int_fr_1231__chr4_408910409299__
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCATG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCATCATTGTGATTTGTTCCTGCCCCACC
CTAACTGAT------AT-AT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------T-----------------------------------
------------------------CTCCCCCACCCTTAAG--------------AAGGTA
CTT-------------------------------TGTAA--T------------------
-----------------------------------------------ATTCTC-CCC---
-------------AG-CCCTT---------AAGACGGTACTTTGTA--------------
------------------------------------------------------------
-----------------------TGCCTATCCC-AAACCTGTAAGAACTAATGATAAT--
-------CC-C---ACCACCCTTTGCTGACTCCTTTTTTGGCCTCAGCCCATCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACA-AGCCTG--TT---GGTGGTCT
CTTCATATGGACACGCCTGA--C------
>LTR7B_chr1_2ltr_int_fr_94__chr1_3020367830204065_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAAGAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC
CTAACTGAT------ACGAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATA--------GT-----------------------------------
------------------------CTCCCCCACCATTAAT--------------AAGGTA
CTT-------------------------------TGTAA--T------------------
-----------------------------------------------AGTCTC-CCC---
--------------G-CCCTG---------GAGAATGTACTTTGTA--------------
------------------------------------------------------------
-----------------------CGCCTATCCC-AAACCTATAAGAACTAATGATAAT--
-------CC-C---ACCACCCTTCGCTGACTCCTTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AG--TAAACAGGCTTGTTGCTCACACAAAGCTTG--TT---GGTGGTCT
CTTCACATGGACTCATGTGA--CA-----
>LTR7B_chr2_Sltr_763__chr2_121177498121177883__
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCATG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGCGATTTGTTCCCGCCCCACC
CTAACTGAT------ACGAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------A----------GT-----------------------------------
------------------------CTCCCCCACCCTTAAG--------------AAGGTA
CAT-------------------------------TGTAA--T------------------
-----------------------------------------------ATTCTC-CCC---
-------------TG-CCCTT---------AAGAATGTATTTTGTA--------------
------------------------------------------------------------
-----------------------CGCCTATCCC-AAACCTATAAGAACTAATGATAAT--
-------CC-C---ACCACAGTTTGCTGACTCTCTTTTCTGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGTCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACACGCGTGA--C------
>LTR7B_chr1_2ltr_int_fr_51__chr1_210187604210188020_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACA
TGTACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAATGGAAG------------
------------------------------------------------------------
----------ATCCATAAAAGACGTGAAAACAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCGTGTCCCACC
CTAACTGAT------AC-AT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATA--------TT-----------------------------------
------------------------CTCCCCCGCCCTTAAG--------------AAGGTA
CTT-------------------------------TGTAA--T------------------
-----------------------------------------------ATTCTT-CCC---
-------------CG-CCCTT---------AAGAATGTACTT------------------
------------------------------------------------------------
----------------------------ATCCC-AAACCTATAAGAACTAATGATAAT--
-------CC-C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC
AGGTGA-----AA--TAAATAGCCTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCGTGA--CA-----
>LTR7B_chr12_Sltr_fr_385__chr12_84949088495326_+_
-GTCAGGCCTCTGAGCTTAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACA
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAATTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTGTCCCACC
CTAACTGAT------AC-AT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATA--------TT-----------------------------------
------------------------CTCCCCCACCTTTAAG--------------AAGGTA
CTT-------------------------------TGTAA--T------------------
-----------------------------------------------ATTCTT-CCC---
-------------CG-CCCTT---------AAGAATGTACTTTGTA--------------
------------------------------------------------------------
-----------------------CACCTATCCC-AAACCTATAAGAACTAATGATAAT--
-------CC-C---ACCACCCTTTGCTGACTTTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACATGCATGA---------
>LTR7B_chr10_Sltr_fr_164__chr10_120106603120107028__
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAATTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----TTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTGTCCCACC
CTAAATGAT------AC-AT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATA--------TT-----------------------------------
------------------------CTCCCCCACCCTTAAG--------------AAGGTA
CTT-------------------------------TGTAA--T------------------
-----------------------------------------------ATTCTT-CCC---
-------------TG-CCCTT---------AAGAATGTACTTTCTA--------------
------------------------------------------------------------
-----------------------TGCCTATCCC-AAACCTATAAGAACTAATGATAAT--
-------CC-C---ACCACACTTTGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GCTGGTCT
CTTCACACAGACATGTGTG----------
>LTR7B_chr16_2ltr_int_fr_554__chr16_3085945230859878_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCACATCC
CCTGTGAC---------------------------------------------CTGCATG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
GTT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTGCCCCACT
CTAACTGAT------ACGAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATA--------TT-----------------------------------
------------------------CTCCCCCACCTTTAAG--------------AAGGTA
CTT-------------------------------TGTAA--T------------------
-----------------------------------------------ATTCTT-CCC---
-------------TG-CCCTT---------GAGAATGTACTTTGTA--------------
------------------------------------------------------------
-----------------------CACCTATCCC-AAACCCATAAGAACTAATGATAAT--
-------CC-C---ACCACCCTTTGCTGATTCTGTTTTCGGACTCTGCCAACCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAAATGCACATGA--CA-----
>LTR7B_chr10_2ltr_int_fr_198__chr10_8656630186566658__
TGTCAGGCCTCTGAGCTCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TGTACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGACGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCTTGCCCAACC
CCAACTGAT------ATGAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATA--------TT-----------------------------------
------------------------CTCCCCTGCCCTTAAG--------------AAGGTA
C-----------------------------------------------------------
------------------------------------------------------------
----------------------------------------TTTGTA--------------
------------------------------------------------------------
-----------------------CACATATCCC-AAACCTGTAAGAACTAATGATAAT--
-------TC-C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGCCT
CTTCACACAGACATGTGTGA--C------
>LTR7B_chr10_Sltr_160__chr10_110371739110372090__
TGTCAGGCCTTTGAGCC-AAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAAAAGTGAAAATAGC--------------------------
---------------------------------T----------TTAA----CCGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC
CTAAGAGAT------ACAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATA--------TT-----------------------------------
------------------------CTCCCCCACCCTTGAG--------------AATGTA
C-----------------------------------------------------------
------------------------------------------------------------
----------------------------------------TTTTTA--------------
------------------------------------------------------------
-----------------------TGCCTATCCC-AAACCTGTGAGAACTAATGATAAT--
-------CC-C---ACCACCCTTTGCTGACTCCTTTTTCGGACTCAGCCTGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--T-T--GGTGGCCT
CTTCACACGGACGTGAGGGA--C------
>LTR7B_chr22_Sltr_fr_969__chr22_4513043645131006_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAC----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC
CT----GAT------ACGGT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATA--------TT-----------------------------------
------------------------CTCCCCCGCCCTTAAG--------------AAGGTA
C-----------------------------------------------------------
------------------------------------------------------------
----------------------------------------TTTATA--------------
------------------------------------------------------------
-----------------------CGCCTATCCC-AAACCCGAGACAACTAATGATAAT--
-------CC-C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGTTCCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--T-T--GGTGGTCT
CTTCACACGGACGCGCGTGA--CA-----
>LTR7B_chr1_Sltr_83__chr1_237488520237488901_+_
-GTCAGGCCTTTGAGCCCA---------------------------AAGGCTGGATGTAC
ACTGTGAC---------------------------------------------CTGCACG
TGTACATCCACA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAGGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CCGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGCTCCTGTCCCACC
CTAACTGAT------AC-AT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATA--------TT-----------------------------------
------------------------CTCCCCCACCCTTAAG--------------AAGGTA
CTT-------------------------------TGTAA--T------------------
-----------------------------------------------ATTCTC-CCC---
-------------CG-CCCTT---------AAGAATGTACTTTGTA--------------
------------------------------------------------------------
-----------------------CACCTACCCC-AAACCTATAAGAACTAATGATAAT--
-------CC-C---ACCATCCTTCGCTGACTCCTTTTTCAGACTCAGCCCGCCTGCACTC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TT---GGTGGACT
CTTCTCACGGACGCGCGTGA--CA-----
>LTR7B_chr19_Sltr_695__chr19_4894989548950286__
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCGTCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCCGGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATGGTGATTTGTTCCTGCCCCACT
CTAACTGAT------ATGAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATA--------TT-----------------------------------
------------------------CTCCCCCCCACTTAAG--------------AAGGTA
CTT-------------------------------TGCAA--T------------------
-----------------------------------------------ATTCTC-CC----
-------------CA-CTCTT---------GAGAATGTAATTTGTA--------------
------------------------------------------------------------
-----------------------CACCTATCCC-AAACCTATAAGAACTAATGATAAT--
-------CC-C---ACCACCCTTTGCTGACTCCCTTTTCAGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGTCTG--TTA--GGTGGTCT
CTTTGCACGGACACGTGTGA--C------
>LTR7B_chr18_2ltr_int_fr_632__chr18_4246184142462228_+_
-GTCAGGCCTTTGAGCCCAAG-----------------------CTAAGCCATCATACC-
CCTGTGAC---------------------------------------------CTACACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAATTGAAG------------
------------------------------------------------------------
----------ATCCACAAAATAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CGGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCCACCCCACC
CTAACTGAT------AC-AT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATA--------TT-----------------------------------
------------------------CTCCCCCACCCTTAAG--------------AAGGTA
CTT-------------------------------CGGAA--T------------------
-----------------------------------------------GTTCTC-TCC---
-------------CG-CTCTT---------AAGAATGTGCTTTGTA--------------
------------------------------------------------------------
-----------------------TGCCTATCCC-AAACCTGTAAGAACTAATGATAAT--
-------CC-C---ACCACCCTTTGCTGACTCTTTTTTTTGACTCAGCCCATCTGCACTC
AGGTGA-----AA--TAAACAGCCTTGTTACTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGATGTGCGTGA--CA-----
>LTR7B_chr5_2ltr_int_fr_1359__chr5_5702206857022454__
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCACATCT
CCTGTGAC---------------------------------------------CTGCATG
TATACATCCAGA------------------------------------------------
-----------------------------CGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCAACATTGTGATTTGTTTCTGCCCCACC
CTAACTGAT------ACGAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATA--------TT-----------------------------------
------------------------CTACCCCCACCTTAAG--------------AAGGTA
CTT-------------------------------TGTAA--T------------------
-----------------------------------------------ATTCTC-CCC---
-------------CG-CCCTT---------GAGAATGCGCTTTGTA--------------
------------------------------------------------------------
-----------------------TGCCTATCCC-AAACCTATAAGAACTAATGATAAT--
-------CC-C---ACCACCCTTTGCTGACTCCTTTTTCTGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTACTCACACAAAGCCCA--TT---GGTGGTCT
CTTCACATGGACGTGCGAGA--C------
>LTR7B_chr19_2ltr_int_fr_709__chr19_5512280555123222_+_
-GTCGGGCCTCCGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGGC---------------------------------------------CTGCACA
TATACATGAAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCAAAAAAGAAGCGAAAATAGT--------------------------
---------------------------------C----------TTAC----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CTACCATTGTGATTTGTTCCCGCCCCACC
CTAACTGAT------ACGAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATA--------TT-----------------------------------
------------------------CTGCCCCGCCTTTAAG--------------AAGGTA
CTT-------------------------------TGTAA--T------------------
-----------------------------------------------ATTCTC-CCT---
--------------G-CCCTT---------GAGAATGTACTTTGTA--------------
------------------------------------------------------------
-----------------------CGCCCATCCC-AAACCTATAAGAACTAATGATAAT--
-------CC-C---AC----CTTTGCTGACTCTGTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAATAGCCTTTTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGTGCGTGA--CA-----
>LTR7B_chr12_Sltr_295__chr12_110408746110409133_+_
-GTCAAGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGGC---------------------------------------------CTGCACG
TACATATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAATTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAGGTAAAAATAGA--------------------------
---------------------------------C----------TTAA----CTGATAAC
GAT---------------------------------------------------------
-------------------------------ACACCATTGTGATTTGTTCCTGCCCCACC
CTAACTGAT------ATGAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATA--------GT-----------------------------------
------------------------CTACCCTGCCCTTAAG--------------AAGGTA
CTT-------------------------------TGTAA--T------------------
-----------------------------------------------ATTCTC-CCC---
-------------CT-CCCTT---------AAGAATATACTTTGTA--------------
------------------------------------------------------------
-----------------------TGCCTATCCC-AAACCTATAAGAACTAATGATAAT--
-------CC-C---ACCACCCTTAGCTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC
AGGTGA-----AA--TAAACAGACTTATTGATCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGTGCATGA--CA-----
>LTR7B_chr12_Sltr_292__chr12_108444573108444956__
TGTCAGACCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCATG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGGAGCAACTGAAG------------
------------------------------------------------------------
----------ATGCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCCACTCCACC
CTAAGTGAT------A--------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------TA--------TT-----------------------------------
------------------------CTCCCCCGCCCTTGAG--------------AAGGTG
CTT-------------------------------TGTAA--T------------------
-----------------------------------------------ATTCTC-CC----
-------------CG-CCCTT---------GAGAATGTACTTTGTA--------------
------------------------------------------------------------
-----------------------CGTCTACCCC-AAACCTATAAGAACTAATGATAAT--
-------CC-C---ACTATCCTTTGCTGACTCCTTTTTTGGACTCAGCTCGCCTGCACCC
AGGTGA-----AA--TA----GCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTGT
CTCCACATGGACGTGCGTGA--C------
>LTR7B_chr19_Sltr_fr_705__chr19_5454498954545455_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCCTATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATTCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCACTGTGACTTGTTCCCGCCCCA--
CTAACTGAT------ATATT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------A-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------------------------A---------------------
-----------------------------
>LTR7B_chr5_Sltr_fr_1300__chr5_126667096126667814__
-GTCAGGCCTCTCAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCATG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------AACTATGAAA----------------------------------------
------------------------------------------------------GATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATCTGTTCCTGCCCCACC
CTAACTGAT------CCAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATA--------TT-----------------------------------
------------------------CTCCCCCACCCTTAAG--------------AAGGTA
CTT-------------------------------TGTAA--T------------------
-----------------------------------------------ATTCTC-CC----
-------------CG-ACCTT---------GAGAATGTACTTTGTG--------------
------------------------------------------------------------
-----------------------CACTTATCCC-AAACCTATAAGAACTAATGATAAT--
-------CC-C---ACCACTCTTTGCTGACTCTCTTTTTGGACTCAGCTCACCTGCACCC
AGGTGA-----AA--AA----GCTTTATTGCTCAAAAAA---------------------
-----------------------------
>LTR7B_chr2_Sltr_907__chr2_8920319489203580__
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCACATCC
CCTGTGAC---------------------------------------------CTGCATG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAACAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAATAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTTTTCCTGCCCCACC
CTAACTGAT------ACGAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------A-----------------------------------------------
--------------------------------CCCTTAAA--------------AAGGTA
CTT-------------------------------TGTAA--T------------------
-----------------------------------------------ATTCTC-CC----
-------------CG-CCTTT---------GAGAATGTACTTTGTA--------------
------------------------------------------------------------
-----------------------TGCCTATCCC-AAACCTATATGAGCTAATAATAAT--
-------CC-C---ACCACCCTTTGCTGACTCCTTTTTCGGAC-CAGCCCGCCTGCACTC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAGAGCCTG--TT---GGTGGTCT
CTTTACATGGACACACGTGA--C------
>LTR7B_chr2_Sltr_908__chr2_8997920589979591_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCACATCC
CCTGTGAC---------------------------------------------CTGCATG
TATCCATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAACAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAATAAGCGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTTTTCCTGCCCCACC
CTAACTGAT------ACGAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------A-----------------------------------------------
--------------------------------CCCTTAAA--------------AAGGTA
CTT-------------------------------TGTAA--T------------------
-----------------------------------------------ATTCTC-CC----
-------------CG-CCTTT---------GAGAATGTACTTTGTA--------------
------------------------------------------------------------
-----------------------TGCCTATCCC-AAACCTATATGAGCTAATAATAAT--
-------CC-C---ACCACCCTTTGCTGACTCCTTTTTCGGAC-CAGCCCGCCTGCACTC
AGATGA-----AA--TAAACAGCCTTGTTGCTCACACAGAGCCTG--TT---GGTGGTCT
CTTTACACGGACACACGTGA--CA-----
>LTR7B_chr5_Sltr_1347__chr5_2346785923468326__
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CTTGTGAC---------------------------------------------CTGCATG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATACC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCAATGCGATTTGTTCCTGCCCCACC
CTAACTGAT------ACAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATA--------TT-----------------------------------
------------------------CTCCCCCACCCTTAAG--------------ACGGTA
TTT-------------------------------TGCAA--T------------------
-----------------------------------------------ATTCTC-CC----
-------------TG-CCCTT---------GAGATTGTACTTTGTA--------------
------------------------------------------------------------
-----------------------TGTCTATCCC-AAACCTGTAAGAACTAATGATAGT--
-------CC-C---AGCACCCTTTACTGACCCCTTTTTCGGACTCAGCCCACCTGCACCC
ACGTGA-----AA--TAAAGAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTTACATGGATGCACGTCA--C------
>LTR7B_chr6_Sltr_1449__chr6_2648986526490252_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGACCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAACTAGC--------------------------
---------------------------------T----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CTACCATTGTGATTTGTTGCTGCCCCACC
CTAACTGAT------ACGAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATA--------GT-----------------------------------
------------------------TTCCCCGGCCCTTAAG--------------AAGGTA
CTT-------------------------------TGTAA--T------------------
-----------------------------------------------ATTCTC-CCC---
-------------CA-CCCTT---------AAGAATGTACTTTGTA--------------
------------------------------------------------------------
-----------------------CACCTATCCC-AAACCTATAAGAACTAGTGATAAC--
-------CC-C---ACCACCCTTTGCTGACTCATTTTTCGGACTCAGCTCGCCTGCACCC
AGGTGA-----AA--TAAATAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACAGTGACAGGTGTGA--CA-----
>LTR7B_chr19_Sltr_670__chr19_2191858721919010_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACCGAAT------------
------------------------------------------------------------
----------ATCCACAAAGGAAGTGAAAATAGC--------------------------
---------------------------------C----------GTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC
CTAACTGAT------ACGAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATA--------TT-----------------------------------
------------------------CTCCCCTGCCCTGAAG--------------AAGGTA
CTT-------------------------------TGTAA--T------------------
-----------------------------------------------AGTCTCTCCC---
-------------CA-CCCGT---------GAGAATGTACTTTGTA--------------
------------------------------------------------------------
-----------------------CACCTATCCC-AAACCTATAAGAACTAATGATAAT--
-------CC-C---ACCACGCTTTGCTGACTCCTTTTTTGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACAGGGATGTGCATGA--CA-----
>LTR7B_chr4_Sltr_1238__chr4_6235460362354957__
TGTCAGGCCTCTGAGCCCAAA-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CAGCATG
TGTACATCCAGA------------------------------------------------
-----------------------------TGTCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCACTGTGATTTGTTCCTGACCCACC
CTAACTGAT------ACGAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATA--------TT-----------------------------------
------------------------CT----------------------------------
------------------------------------------------------------
-----------------------------------------------------TCCC---
-------------CG-CCCTT---------AAGAAGGTACTTTGTA--------------
------------------------------------------------------------
-----------------------CGCCCATCCT-AAACCTATGAGAACTAATGATAAT--
-------CC-C---ATCACCCTTTGCTGACTCCTTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TT---GGTGGTCT
CTTCACAGCGACGCGCATGA--C------
>LTR7B_chr1_2ltr_int_fr_116__chr1_5342433753424766_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATTGCATCC
CCTATGAC---------------------------------------------TTGCACA
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATCGTGATTTTTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA---------------------------------------------
------------------------------------------------------------
CTTTGTAATCTCCCCCACCCTTAAGAAGGT------------------------------
---------------------------------------------------------TCT
TTGTAA-TCTCCCCA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCT-G
CCCGCAAAACATTGCTCTTAACTTCAC---------------------------------
-----------------------CGCCTATCCCAAAACCTGTAAGAACTAATGATAAT--
-------C--C---ACCACCCTTTGCTGACTCTCTTTTCAGACTCAGCCCACCTGCACAC
AAGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGCGCATAA---------
>LTR7B_chr6_2ltr_int_fr_1401__chr6_126848846126849274_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATGGCATCC
CCTGTGAC---------------------------------------------TTGCACA
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA---------------------------------------------
------------------------------------------------------------
CTTTGTAATCTCCCCCACCCTTAAGAAGGT------------------------------
---------------------------------------------------------TCT
TTGTAA-TCTCCCCA-TCCTT---------GAGAATGTACTTTGTGAGATCCACCCCT-G
CCCGCAAAACATTGCTCTTAACTTCAC---------------------------------
-----------------------CGCCTATCCCAAAACCTATAAGAACCAATGATAAT--
-------C--C---ACCACTCTTTGCTGACTCTCTTTTCAGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGCGCATGA---------
>LTR7B_chr9_2ltr_int_fr_1728__chr9_9453987194540297_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTACACA
TATACACCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA---------------------------------------------
------------------------------------------------------------
CTTTGTAATCTCCCCCACCCTTAAGAAGGT------------------------------
---------------------------------------------------------TCT
TTGTAA-TCTCCCCA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCTT-G
CCCGCAAAACATTGCTCTTAACTTCAC---------------------------------
-----------------------CGCCTATCCCAAAACCTGTAAGAACTAATGATAAT--
-------C--C---ACCACTCTTTGCTGAC--TCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AG--TAAACAGCCATGTTGCTCACACAAAGTCTC--TTT--GGTGGTCT
CTTCACACGGACGCGCATGA---------
>LTR7B_chr16_Sltr_fr_560__chr16_5667432656674780__
TGTCAGGCCTCTGAACCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACA
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATC---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTTCCCCGCC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA---------------------------------------------
------------------------------------------------------------
CTTTGTAATCTCCCCCACCCTTAAGAAGAT------------------------------
---------------------------------------------------------ACT
TTGTAA-TCTCCCCA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCT-G
CCCACAAAACATTGCTCTT-----CAC---------------------------------
-----------------------CGCCTGTCCCAAAACCTACAAGAACTAATGATAAT--
-------C--C---ACCACCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGCGAATG----------
>LTR7B_chr13_Sltr_fr_408__chr13_4661670546617133__
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA---------------------------------------------
------------------------------------------------------------
CTTTGTAATCTCCCCCACCCTTAAGAAGGT------------------------------
---------------------------------------------------------TCT
TTGTAATTCTCCTCA-CCCTT---------GAGAATGTACTTTGTGAGATCCACTCCT-G
CCCGCAAAACATTGCTCTTAACTTCAC---------------------------------
-----------------------CGCCTATCCCAAAACCTATAAGAACTAATGATAAT--
-------C--C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACCAGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGAACGCGCATG----------
>LTR7B_chr13_Sltr_fr_409__chr13_4662627946626706_+_
-GTCAGACCCC-GAGCCCAAG-----------------------CCAAGCCATCACATCC
CCTGTGAC---------------------------------------------TTAAACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAGAGAAGTAAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA---------------------------------------------
------------------------------------------------------------
CTTTGTAATCTCCCCCACCCTTAAGAAGGT------------------------------
---------------------------------------------------------ACT
TTGTAATTCTCCTTA-CCCTT---------GAGAATGTACTTTGTGAGATCCACTCCT-G
CCCGCAAAACATTGCTCTTAACTTCAC---------------------------------
-----------------------CGCCTATCCCAAAACCTATAAGAACTAATGATAAT--
-------C--C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CCTCACATGGACGTGCATGA---------
>LTR7B_chr5_2ltr_int_fr_1309__chr5_136301374136301833_+_
-GTCAGGCCTCTGAACCCAAG-----------------------CCAAGCCATCACATCC
CCTGTGAC---------------------------------------------TTGTACG
TATACATCCAGA------------------------------------------------
-----------------------------TAGCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAATAAT--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA---------------------------------------------
------------------------------------------------------------
CTTTGTAATCTCCCCCACCCTTAAGAAGGT------------------------------
---------------------------------------------------------ACT
TTGTAATCTCCCCAA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCT-G
CCCGCAAAACATTGCTCTTAACTTCAC---------------------------------
-----------------------CGCCTATCCCAAAACCTATAAGAACTAATGATAAT--
-------C--C---ACCACCCTTCACTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGTTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACACGCATGA---------
>LTR7B_chr18_Sltr_fr_621__chr18_2723059227231051_+_
-GTAAGGCCTCTGAACCCAAG-----------------------TCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA---------------------------------------------
------------------------------------------------------------
CTTTGTAATCTCCCCCACCCTTAAGAGGGT------------------------------
---------------------------------------------------------ACT
TTGTAATCTCCCCTA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCT-G
CCCGCAAAACATTGCTCTTAACTTCAC---------------------------------
-----------------------CGCCTATCCCAAAACCTATAAGAACTAATGATAAT--
-------C--C---ACCACCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACGTGCATGA---------
>LTR7B_chr1_Sltr_fr_22__chr1_158102432158102891__
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTAAC---------------------------------------------TTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCAACAAAAGAAGTAAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGCTGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA---------------------------------------------
------------------------------------------------------------
CTTTGTAATCTCCCCCACCCTTAAGAAGGT------------------------------
---------------------------------------------------------ACT
TTTTAATCTCCCCCA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCT-G
CCCGCAAAACATTGCTCTTAACTTCAC---------------------------------
-----------------------TGCCTATCCCAAAACCTGTAAGAACTAATGATAAT--
-------C--C---ACCACCCTTTGCTGACTCTCTTTTAGGACTCAGCCTGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--AGTGGTCT
CTTCACACAGATGCACATG----------
>LTR7B_chr12_Sltr_fr_293__chr12_110049329110049773__
TGTGAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA---------------------------------------------
------------------------------------------------------------
CTTTGTAATCTCCCCCACCCTTA---AGGT------------------------------
---------------------------------------------------------ACT
TTGTAATCTCCCCCA-CCCTT---------GAGAATGTACTTCGTGAGATCCACCCCT-G
CCCGCAAAACATTGCTCTTAACTTCAC---------------------------------
-----------------------CGCCTATCCCAAAACCTGTAAGAACTAATGATAAT--
-------C--C---ACCACCCTTTGCTTACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACA----------------------
>LTR7B_chr14_Sltr_fr_463__chr14_5067913950679598__
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACATGCAGA------------------------------------------------
-----------------------------TGTCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTTCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA---------------------------------------------
------------------------------------------------------------
CTTTGTAATCTCCCCCACCCTTAAGAAGGT------------------------------
---------------------------------------------------------ACT
TTGTAATCTCCCCCA-CCCTT---------GAGAATGTACTTTGTGAGATCCACTCCT-G
CCCGCAAAACATTGCTCTTAACTTCAC---------------------------------
-----------------------CGCCTATCCCCAAACCTATAAGAACTAATGATAAT--
-------C--C---ACTACCCTTTGCTGACTCTCTTTTCGGACTCAGCCTACCTGCACAC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAGGCCTG--TTC--GGTGGTCT
CCTCACACAGACGCACATG----------
>LTR7B_chr4_Sltr_fr_1215__chr4_1902794319028402__
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCTGTCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCGCAAAAGAAGTAAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA---------------------------------------------
------------------------------------------------------------
CTTTGTAATCTCCCCCACCCTTAAGAAGGT------------------------------
---------------------------------------------------------ACT
TTGTAATCTCCCCCA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCT-G
CCCGCAAAACATTGCTCTTATCTTCAC---------------------------------
-----------------------CGCCTATCCCAAAACCTATAAGAACTAATGATAAT--
-------C--C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCTTCCTGCACCC
AGGTGA-----AA--TAAACAACCATGTTCCTCACACGAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATG----------
>LTR7B_chrX_Sltr_fr_1741__chrX_109829043109829502_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCATG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAAGAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTTCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA---------------------------------------------
------------------------------------------------------------
CTTTGTAATCTCCCCCACCCTTAAGAAGGT------------------------------
---------------------------------------------------------ACT
TTGTAATCTCCCCCA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCT-G
CCCGCAAAACATTGCTCTTACCTTCAC---------------------------------
-----------------------CGCCTATCCCAAAACCTATAAGAACTAATGATAAT--
-------C--C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACCGACGCGCATGA---------
>LTR7B_chr3_Sltr_fr_1056__chr3_182742731182743158__
TGTCAGGCCTTTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACATTCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA---------------------------------------------
------------------------------------------------------------
CTTTATAATCTCCCCCACCCTTAAGAAGGT------------------------------
---------------------------------------------------------TCT
TTGTAATTCTCCCCA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCT-G
CCCGCAAAACATTGCTCTTAACTTCAC---------------------------------
-----------------------GGCCTATCCCAAAACCTATAAGAACTAATGATAAT--
-------C--C---ACCAC-CTTTGCTGACTCTCTTTTTGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACAAAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACACGCACG----------
>LTR7B_chr6_2ltr_int_fr_1406__chr6_131402925131403357_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCATG
TATACATCCATA------------------------------------------------
-----------------------------TGGCCTGAAGTAACCGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA---------------------------------------------
------------------------------------------------------------
CTTTGTAATCTCCCCCGCCTTTAAGAAGGT------------------------------
---------------------------------------------------------TCT
TTGTAATTCTCCCCA-CCCTT---------GACAATGTGCTTTGTGAGATCCACCCTT-G
CCCGCAAAGCATTGCTCTTAACTTCAC---------------------------------
-----------------------CGCCTATCCCAAAACCTATAAGAACTAATGATAAT--
-------C--C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACACGCATGA---------
>LTR7B_chr12_2ltr_int_fr_299__chr12_1161483911615294__
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTCAC---------------------------------------------TTGCATG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAG---TACAAATAGC--------------------------
---------------------------------C----------TTAA----ATGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTTCCCCACT
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA---------------------------------------------
------------------------------------------------------------
CTTTGTAATCTCCCCCACCCTTAAGAAGGTACTTTGTAA--T------------------
---------------------------------------------------CTCCCTACT
TTGTAATTCTCCCCA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCT-G
CCCGCAAAACACTGCTCTTAACTTCAC---------------------------------
-----------------------CGCCTATCCCAAAACCTATAAGAACTAATGATAAT--
-------C--C---ACCACACTTTGCTGA--CTCTTTTGGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCACATG----------
>LTR7B_chr17_2ltr_int_fr_611__chr17_7525262175253051_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATGGCATCC
CCTATGAC---------------------------------------------TTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGATGTAAAAATAGC--------------------------
---------------------------------C----------TTAC----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCAGCATTGTGATTTGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA---------------------------------------------
------------------------------------------------------------
CTTTGTAATCTCCCCCACCCTTAAGAAGGTTCTTCGT-----------------------
------------------------------------------------------------
----AATTCTCCCCA-CCCTT---------GAGAATGTACTTTGTGAGATCCATCCCT-G
CCCGCAAAACATTGCTCTTAACTTCAC---------------------------------
-----------------------CGCCTATCCCAAAACCTATAAGAACTAATGATAAT--
-------C--C---ACCACACTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCATCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGCGCATGA---------
>LTR7B_chr16_Sltr_fr_535__chr16_1898988918990353__
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATTGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATATATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCATC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA---------------------------------------------
------------------------------------------------------------
CTTTGTAATCTCCCCCACCCTTAAGAAGGTACTTTGTAA--T------------------
---------------------------------------------------CTCCCCTCT
TTGCAATTCTCCCCA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCT-G
CCTGCAAAACATTGCTCTTAACTTCAC---------------------------------
-----------------------CGCCTATCCCAAAACCTATAAGAACTAATGATAAT--
-------C--C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGCGCATG----------
>LTR7B_chr16_Sltr_fr_538__chr16_2144023421440688_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATTGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACACAAGAAGTAAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTAACTCTT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA---------------------------------------------
------------------------------------------------------------
CTTTGTAATCTCCCCCACCCTTAAGAAGGTACTTTGTAA--T------------------
---------------------------------------------------CTCCCCTCT
TTGTAATTCTCCCCA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCT-G
CCTGCAAAACATGGCTCTT-----CAC---------------------------------
-----------------------CCCCTATCCCAAAACCTGTAAGAACTAATGATAAT--
-------C--C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATGA---------
>LTR7B_chr16_Sltr_fr_541__chr16_2249821522498669__
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATTGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACACAAGAAGTAAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTAACTCTT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA---------------------------------------------
------------------------------------------------------------
CTTTGTAATCTCCCCCACCCTTAAGAAGGTACTTTGTAA--T------------------
---------------------------------------------------CTCCCCTCT
TTGTAATTCTCCCCA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCT-G
CCTGCAAAACATGGCTCTT-----CAC---------------------------------
-----------------------CCCCTATCCCAAAACCTGTAAGAACTAATGATAAT--
-------C--C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATG----------
>LTR7B_chr16_Sltr_fr_548__chr16_2941889529419348_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATTGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACACAAGAAGTAAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTAACTCTT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA---------------------------------------------
------------------------------------------------------------
CTTTGTAATCTCCCCCACCCTTAAGAAGGTACTTTGTAA--T------------------
---------------------------------------------------CTCCCCTCT
TTGTAATTCTCCCCA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCT-G
CCTGCAA-ACATGGCTCTT-----CAC---------------------------------
-----------------------CCCCTATCCCAAAACCTGTAAGAACTAATGATAAT--
-------C--C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTA--TTT--GGTGGTCT
CTTCACACGGACGCGCATGA---------
>LTR7B_chr16_Sltr_fr_540__chr16_2187250221872956_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATTGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACACAAGAAGTAAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTAACTCTT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA---------------------------------------------
------------------------------------------------------------
CTTTGTAATCTCCCCCACCCTTAAGAAGGTACTTTGTAA--T------------------
---------------------------------------------------CTCCCCTCT
TTGTAATTCTCCCCA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCT-G
CCTGCAAAACATGGCTCTT-----CAC---------------------------------
-----------------------CCCCTATCCCAAAACCTGTAAGAACTAATGATAAT--
-------C--C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATGA---------
>LTR7B_chr16_Sltr_fr_550__chr16_2952069129521144_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATTGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACACAAGAAGTAAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTAACTGTT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA---------------------------------------------
------------------------------------------------------------
CTTTGTAATCTCCCCCACCCTTAAGAAGGTACTTTGTAA--T------------------
---------------------------------------------------CTCCCCTCT
TTGTAATTCTCCCCA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCT-G
CCTGCAA-ACATGGCTCTT-----CAC---------------------------------
-----------------------CCCCTATCCCAAAACCTGTAAGAACTAATGATAAT--
-------C--C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--AGTGGTCT
CTTCACACGGACGCGCATGA---------
>LTR7B_chr16_Sltr_fr_552__chr16_3026067330261126_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATTGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACACAAGAAGTAAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTAACTGTT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA---------------------------------------------
------------------------------------------------------------
CTTTGTAATCTCCCCCACCCTTAAGAAGGTACTTTGTAA--T------------------
---------------------------------------------------CTCCCCTCT
TTGTAATTCTCCCCA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCT-G
CCTGCAA-ACATGGCTCTT-----CAC---------------------------------
-----------------------CCCCTATCCCAAAACCTGTAAGAACTAATGATAAT--
-------C--C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATGA---------
>LTR7B_chr16_Sltr_fr_543__chr16_2254367922544133__
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCACTGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACACAAGAAGTAAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTAGTTTCTGCCCCACC
CTAACTCTT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA---------------------------------------------
------------------------------------------------------------
CTTTGTAATCTCCCCCACCCTTAAGAAGGTACTTTGTAA--T------------------
---------------------------------------------------CTCCCCTCT
TTGTAATTCTCCCCA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCT-G
CCCGCAAAACATGGCTCTT-----CAC---------------------------------
-----------------------CCCCTATCCCAAAACCTGTAAGAACTAATGATAAT--
-------C--C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACCGACGCGCATG----------
>LTR7B_chr16_Sltr_fr_574__chr16_7021296070213414_+_
-GTCTGGCATCTGAGCCCAAG-----------------------CCAAGCCATTGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACACAAGAAGTAAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTAACTGTT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATA---------------------------------------------
------------------------------------------------------------
CTTTGTAATCTCCCCCACCCTTAAGAAGGTACTTTGTAA--T------------------
---------------------------------------------------CTCCCCCCT
TTGTAATTCTCCCCA-CCCTT---------CAGAATGTACTTTGTGAGATCTACCCCT-G
CCCACAAAACATGGCTCTT-----CAC---------------------------------
-----------------------CCCCTATCCCAAAACCTGTAAGAACTAATGATAAT--
-------C--C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TGAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGTGCATGA---------
>LTR7B_chr7_Sltr_fr_1559__chr7_5057882750579286_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGACA------------
------------------------------------------------------------
----------ATCCACAAAAGCAGTAAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCACTGTGATTTGTTTCTGCCCCATC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA---------------------------------------------
------------------------------------------------------------
CTTTGTAATCTCCCCCACCCTTAAGAAGGTACTTTGTAA--T------------------
---------------------------------------------------CTCCCCTCC
TTGTAATTCTCCCCG-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCT-G
CCCACAAAACATTGCTCTTAACTTCAC---------------------------------
-----------------------CGCCTATACCAAAACCTATAAGAACTAATGATAAT--
-------C--C---ACCACCCTTTGCTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC
AGGTGA-----AG--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGCGCATGA---------
>LTR7B_chr19_2ltr_int_fr_693__chr19_4705498147055408__
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCA
CCTGAGAC---------------------------------------------TTGCAGG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTCTTCCTGCCCCAC-
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA---------------------------------------------
------------------------------------------------------------
CTTTGTAATCTCCCCCACCCTTA-------------------------------------
---------------------------------------------------------TCT
TTGTAATTCTCCCCA-CCCTT---------GAGAATGTACTGTGTGAGATCCACCCCT-G
CCCGCAAAACATTGTTCTTAACTTCAC---------------------------------
-----------------------CGCCTATCCCAAAACCTCTCAGAACTAATGATAAT--
-------C--C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCTGCCTGCAGCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATG----------
>LTR7B_chr17_Sltr_fr_604__chr17_6732833867328797_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATTGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCTCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA---------------------------------------------
------------------------------------------------------------
CTTTGTAATCTCCCCCACCCTTAATAACGTACTTTCTAA--T------------------
---------------------------------------------------CTCCCCTCT
TTGTAATTCTCCCCA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCT-G
CCCACAAAACATTGCTCTTAACTTCAC---------------------------------
-----------------------TGCCTATCCCAAAACCTGTAAGAACTAATGATAAT--
-------C--C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCAGCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTAGTCT
CTTCACATGGATGCGCATGA---------
>LTR7B_chr16_2ltr_int_fr_586__chr16_88379728838400__
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTATGAC---------------------------------------------TTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAAATGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAATAGC--------------------------
---------------------------------C----------TTAG----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CGAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA---------------------------------------------
------------------------------------------------------------
CTTTGTAATCTCCCCCACCCTTAAGAAGGTTCTTTGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CTCTT---------GAGAATGTACTTTGTGAGATCCACTCCT-G
CCCACAAAACATTGCTCTTAACTTCAC---------------------------------
-----------------------CGCCTATCCCAAAACCCATAAGAACTAATGATAAT--
-------C--C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATG----------
>LTR7B_chr1_Sltr_fr_20__chr1_150580686150581114__
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CGAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA---------------------------------------------
------------------------------------------------------------
CTTTGTAATCTCCCCCACCCTTAAGAAGGTTCTTTGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCT-G
CCCACAAAACATTGCTCTCAACTTCAC---------------------------------
-----------------------CACCTATCCCAAAACCTGTAAGAACTAATGATAAT--
-------C--C---ATCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTGT
CTTCACACAGACGCGCATG----------
>LTR7B_chr4_Sltr_fr_1196__chr4_167929306167929734__
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTATGAC---------------------------------------------TTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACT
GGAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA---------------------------------------------
------------------------------------------------------------
CTTTGTAATCTCCCCCACCCTTAAGAAGCTTCTTTGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCT-G
CCCGCAAAACATTGCTCTTAACTTCAC---------------------------------
-----------------------CGCCTATCCCAAAACCTGTAAGAACTAATGAAAAT--
-------C--C---ACTACCCTTTGCTGACTCTCTTTTCGGACTCAGCCAACCTGCACCC
AGGTGA-----AA--TAAACAGCCACGTTGCTCCCACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGATGCGCATG----------
>LTR7B_chr1_Sltr_fr_122__chr1_5774313257743560_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTATGAC---------------------------------------------TTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATCGTGATTTGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA---------------------------------------------
------------------------------------------------------------
CTTTGTAATCTCCCCCACCCTTAAGAAGGTTCTTTGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCT-G
CCTGCAAAACATTGCTCTTAACTTCAC---------------------------------
-----------------------CACCTATCCCCAAACCTATAAGAACTAATGATAAT--
-------C--C---ATCACCCTTTGCTGACTCTCTTTTCGGACTCAGCTCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACAGAAAGCCTG--TTT--GGTGGTCT
CTCCACACGGATGCGCGTGA---------
>LTR7B_chr3_2ltr_int_fr_1017__chr3_148151529148151957_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC
CCTATGAC---------------------------------------------TTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CAAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA---------------------------------------------
------------------------------------------------------------
CTTTGTAATCTCCCCCACCCTTAAGAAGGTTCTCTGTAA--T------------------
---------------------------------------------------TCTCTC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCT-G
CCCGCAAAACATTGCTCCTAACTCCAC---------------------------------
-----------------------CACCTATCCCAAAACCTATAAGAACTAATGACAAT--
-------C--C---ACCACCTTTTGCTGACTTTCTTTTCCGACTAAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGCTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGCGCATGA---------
>LTR7B_chr1_2ltr_int_fr_82__chr1_236937494236937922__
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC
CCTATGAC---------------------------------------------TTGCATG
TATACATCCAGA------------------------------------------------
-----------------------------TGTCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCTACAAAAGAAGTAAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCTCCACC
CGAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA---------------------------------------------
------------------------------------------------------------
CTTTGTAATCTCCCCCACCCTTAAGAAGGTTCTTTGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGCGAGATCCACCCCT-G
CCCGCAAAACATTGCTCTTAACTTCAC---------------------------------
-----------------------TGCCTATCCCAAAACCTATAAGAACTAATGATAAT--
-------C--C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGTCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATG----------
>LTR7B_chr12_2ltr_int_fr_335__chr12_1702693517027363__
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCATG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA---------------------------------------------
------------------------------------------------------------
CTTTGTAATCTCCCCCATCCTTAAGAAGGTACTTTGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCT-G
CCCGCAAAACATTGCTCTTAACTTCAC---------------------------------
-----------------------CACCTATCCCAAAACCTATAAGAACTAATGATAAT--
-------C--C---ACTACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCCGCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTAACACGGACGCGCATG----------
>LTR7B_chr14_2ltr_int_fr_474__chr14_7370333973703768_+_
-GTCAGACCTCTGAGCCCAAG-----------------------CTAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA---------------------------------------------
------------------------------------------------------------
CTTTGTAATCTCCCCCACCCTTAAGAAGGTTCTTTTTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGCTCCACCCCT-G
TCTGCAAAACATTGCTCTTAACTTCAG---------------------------------
-----------------------CGCCTATCCCAAAACCTATAAGAACTGATGATAAT--
-------C--C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTACTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGTGCATGA---------
>LTR7B_chr2_Sltr_fr_836__chr2_222847921222848380__
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACA
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAATAGC--------------------------
---------------------------------C----------TTAC----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACAATTGTGATTTGTTCCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA---------------------------------------------
------------------------------------------------------------
CTCTGTAAACTCCCCCACCCTTAAGAAGGTACTTTGTAA--T------------------
---------------------------------------------------CTCCTT---
-------------CA-CCCTT---------AAGAATGTACTTTGTGAGATCCAGCCCT-G
CCCGCAAAACATTGCTCTTAACTTCAC---------------------------------
-----------------------CGCCTATCCCAAAACCTGTAAGAACTGATGATAAT--
-------C--C---ACCAGCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTG--GGTGGTCT
TTTCACACGGACGCGCATG----------
>LTR7B_chr8_2ltr_int_fr_1587__chr8_104285912104286339_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAATAGC--------------------------
---------------------------------C----------TTAA----CAGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA---------------------------------------------
------------------------------------------------------------
CTTTGTAATCTCCCCCACCCTTAAGAAGGTTCTTTGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GACAATGTACTTTGTGAGATCCACC-CT-G
CCCACAAAACATTGCTCTTAACTTCAC---------------------------------
-----------------------TGCCTATCCCAAAACCTATAAGAACTAATGATAAT--
-------C--C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGTTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGATGCACATGA---------
>LTR7B_chr12_Sltr_fr_371__chr12_70205957021052__
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACA
TATACAACCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTGCCCTACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA---------------------------------------------
------------------------------------------------------------
CTTTGTAATCTCCCCCACCCTTAAGAAGGTACTTTGTAA--T------------------
---------------------------------------------------C-CCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCT-G
CCCACAAAACATTGCTCTTAACTTCAC---------------------------------
-----------------------CGCCTATCCCAAAACCTATAAGAACTAATGATAAT--
-------C--C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGG-GA-----AA--TAAACAGCCTTGTTGCTCACACAGAGCCTG--TCT--GGTGGTCT
CTTCACACGGACGCACATG----------
>LTR7B_chr2_Sltr_fr_826__chr2_208190520208190979__
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC
CCTGTGAC---------------------------------------------TTGCACA
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTAAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAATAGT--------------------------
---------------------------------C----------TTAA----GTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTTCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTG---------------------------------------------
------------------------------------------------------------
CTTTGTAATCTCCCCC-CGCTTAAGCAGGTACTTTGTAA--T------------------
---------------------------------------------------CTCCCC---
-------------CA-CCCTT---------GAGCATGTAGTTTGTGAGATCCACCCCT-G
CCCACAAAACATTGCTCCTAACTCCAC---------------------------------
-----------------------CGCCTATCCCAAAACCTATAAGAACTAATGATAAT--
-------C--C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGTTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACGCACATG----------
>LTR7B_chr21_Sltr_fr_949__chr21_3004070030041128_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC
CCTGTGAC---------------------------------------------TTGCACA
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
AAT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA---------------------------------------------
------------------------------------------------------------
CTTTGTAATCTCCCCCACCCTTAAGAAGGTTCTTTGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCT-G
CCCGTAAAACATTGCTCTTAACTTCAC---------------------------------
-----------------------CATCTATCTCAAAACCTATAAGAACTAATGATAAT--
-------C--C---ACCACCCTTTACTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCACATGA---------
>LTR7B_chr20_Sltr_fr_931__chr20_46597764660204_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA---------------------------------------------
------------------------------------------------------------
CTTTGTAATCTCCCCCACCCTTAAGAAGGTTCTTTGTAG--T------------------
---------------------------------------------------TCTCCT---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCT-G
CCGGCAAAACGTTGCTCTTAACTTCAC---------------------------------
-----------------------CGCCTATCCCAAAACCTATAAGAACTAATGACAAT--
-------C--C---ACCACCCTTCGCTGACTCTTTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGCGGTCT
CTTCACACGGACGCACATGA---------
>LTR7B_chr14_2ltr_int_fr_458__chr14_4654400646544465_+_
-GTCAGGTCTCTGATCCCAAG-----------------------CCAAGCCATCACATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAATAAC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ACT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTCACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA---------------------------------------------
------------------------------------------------------------
CTTTGTAATCTCTGCCACCCTTAAGAAGCTTCTTTATAA--T------------------
---------------------------------------------------TTTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCT-G
CCTGCAAAACATTGCTCTTAACTTCAC---------------------------------
-----------------------CACCTATCCCAAAACCTCTAAGAACTAATGATAAT--
-------C--C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTTACACGGACACGCATGA---------
>LTR7B_chr13_Sltr_fr_401__chr13_3060090730601365_+_
-GTCAGGCCTCTGATCCCAAG-----------------------CCAAGCCATCACTTCC
CCTGTGAC---------------------------------------------TTGCATG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAATAAC--------------------------
---------------------------------C----------TTAA----CTAATGAC
ATT---------------------------------------------------------
-------------------------------CTACCACTGTGATTTGTTTCTGCCCCACC
CTCACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA---------------------------------------------
------------------------------------------------------------
CTTTGTAATCTCCGCCACCCTTAAGAAGGTTCTTTATAA--T------------------
---------------------------------------------------TTCCCC---
-------------CA-CCCTT---------GAGAATGTAATTTGTGAGATCCACCGCT-G
CCCGCAAAACATTGCTCTTAACTTCAC---------------------------------
-----------------------CACCTATCCCAAAACCTATAAGAAGTAATGATAAT--
-------C--C---ACCACCCTTTGCTGACTCTCTTTTCTGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAATAGCCATGTTGCTCACACAAAGCCTG--TTT--GGT-GTCT
CTTCACATGGACACGCATGA---------
>LTR7B_chr2_Sltr_fr_771__chr2_1316926413169724__
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC
CCTGTGAC---------------------------------------------TTGCATG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAATAAC--------------------------
---------------------------------C----------TTAA----CCGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTCACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA---------------------------------------------
------------------------------------------------------------
CTTTGTAATCTCCACCACCCTTAAGGAGGTTCTTTATAA--T------------------
---------------------------------------------------TTCCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACC-----
CCTGCAAAACATTGCTCTTAACTTCAC---------------------------------
-----------------------CGCCTATCCCAAAACCTATAACAACTAATGATAAT--
-------C--C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTTCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACACGCATG----------
>LTR7B_chr20_Sltr_fr_922__chr20_2523151325231972_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTCACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA---------------------------------------------
------------------------------------------------------------
CTTTGTAATCTCCACCACCCTTAAGAAGATTCTTTATAA--T------------------
---------------------------------------------------TTCCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCA-G
CCCGCAAAACATTGCTCTTAACTTCAC---------------------------------
-----------------------CGCCTATCCCAAAACCTATAAGAACTAATGATAAT--
-------C--C---ACCACCCTTTGCTGACTCTCTTTTCGGGCTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGATCT
CTTCACAGGGACGCGCATGA---------
>LTR7B_chr5_Sltr_fr_1352__chr5_3471112834711588__
TGTCAGGCCTCTGAGCCCAGG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACA
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAATAAC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTCACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA---------------------------------------------
------------------------------------------------------------
CTTTGTAATCTCTGCCACCCTTAAGAATGTTCTTTATAA--T------------------
---------------------------------------------------TTCCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCT-G
CCGGCAAAACATTGCTCTTAACTTCAC---------------------------------
-----------------------TGCCTATCCCAAAACCTATAAGAACTAATGAAAAT--
-------C--C---ACCACCCTTTGCTGAGTCTCTTTTCGGACTCAACCCGCCTGCACCC
AGGTGA-----AA--TAAATAGCCATGTTGCTCACATAAAGCCTG--TTT--GGTTGTCT
CTTCACACGGACGCGCATG----------
>LTR7B_chr2_Sltr_fr_815__chr2_194502313194502772_+_
-GTCAGGCCTCCGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACT
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAATAAC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTCACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA---------------------------------------------
------------------------------------------------------------
CTTTGCAATCTCCGCCACCCTTAAGATGGTTCTTTATAA--T------------------
---------------------------------------------------TTCCCC---
-------------AA-CCCTT---------GAGGATGTACTTTGTGAGATCCATCCCT-G
CCCGCAAAACATTGCTCTTAACTTCAC---------------------------------
-----------------------CACCTATCCCAAAACCTATAAGAACTAATGATAAT--
-------C--C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGTCTG--TTT--GGTGGTCT
CTTCACGTGGACGCGCATGA---------
>LTR7B_chr8_Sltr_fr_1626__chr8_4980184949802308_+_
-GTCAGGCCTCTGAGCGCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATGCATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAACAAGTAAAAATAAC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTTTGATTTGTTTCTGCCCCACC
CTCACTGAA-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA---------------------------------------------
------------------------------------------------------------
CTTTGTAATCTCTGCCACCTTTAAGAAGTTTCTTTATAA--A------------------
---------------------------------------------------TTCCCC---
-------------CA-CCCTT---------GAGAATATACTTTGTGAGATCCACCCCT-G
CCTGTAAAACATTGCTCTTAACTTCAC---------------------------------
-----------------------CACCTATCCCAAAACCTATAAGAACTAATGATAAT--
-------C--C---ACCACACTTTGCTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
TTTCACATGGACGCACATGA---------
>LTR7B_chr1_Sltr_fr_121__chr1_5752439757524855__
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCGTGGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAATAAC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA---------------------------------------------
------------------------------------------------------------
CTTTGTAATCTCCGCCACCCTTAAGAAGGTTCTTTATAA--T------------------
---------------------------------------------------TTCCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCAACCCT-G
CCCACAAAACATTGCTCTTAACTTCAT---------------------------------
-----------------------CGCCTATCCCAAAACCTGTAAGAACTAATGATAAT--
-------C--C---ACCACACTTTGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACATCTATG-TGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTCCACATGGACGTGCATG----------
>LTR7B_chr2_Sltr_fr_905__chr2_8652084386521292_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCTTGAAGTAACTGAAG------------
------------------------------------------------------------
----------AACCACAAAAGAAGTAAAAA------------------------------
-----------------------------------------------------TGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTCACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA---------------------------------------------
------------------------------------------------------------
CTTTGTAATCTCCGCCACCCTTAAGAAGGTTCTTTATAA--T------------------
---------------------------------------------------TTCCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCT-G
TCCGCAAAACATTGCTCTTAACTTCAC---------------------------------
-----------------------CGCCTATCCCCAAACCTATAAGAACTAATGATAAT--
-------C--C---ACCACCCTTTGCTGACTCTCTTTTTGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCTTTATTGCTCATACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGCGCATGA---------
>LTR7B_chr2_2ltr_int_fr_835__chr2_218179458218179886__
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAATACC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTGTCTGCCTCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA---------------------------------------------
------------------------------------------------------------
CTTTGTAATCTCCCGTACCCTTAAGAAGGTTCTTTGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTATGAGATCCACCCCT-G
CCCACAAAACATTGCTCTTAACTTCAC---------------------------------
-----------------------CGCCTATCCCAAAACCTATAAGAACTAATGATAAT--
-------C--C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACCAGCACCC
AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGCACATG----------
>LTR7B_chr20_2ltr_int_fr_919__chr20_1975634819756776__
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGTCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAACATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCCGCCCCACC
CTAACTAAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA---------------------------------------------
------------------------------------------------------------
CTTTGTAATCTCCCCCACCCTTAAGAAGGTTCTTTGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCT-G
CCCACAAAACATTGCTCTTAACTTCAC---------------------------------
-----------------------CGCCTATCTCAAAACCTATAAGAACTAATAATAAT--
-------C--C---ACCACTCTTTGCTGACTCTCTGTTTGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATG----------
>LTR7B_chr8_Sltr_fr_1614__chr8_133607498133607927_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC
CTAACTAAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA---------------------------------------------
------------------------------------------------------------
CTTTGTAACCTCCCCCACCCTTAAGAAGGTTCTTTGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCT-G
CCGGCAAAACATTGCTCTTAACTTCAC---------------------------------
-----------------------CGCCTATCCCAAACCCTATAAGAACTAATAATAAT--
-------C--C---ACCACTCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGCGTATGA---------
>LTR7B_chr4_2ltr_int_fr_1186__chr4_163093170163093602_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACA
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTGCCCCACT
CTAACTAAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA---------------------------------------------
------------------------------------------------------------
CTTTGTAATCTCCCCCACCGTTAAGAAGGTTCTTTGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCT-G
CCCGCAAAACATTGCTCTTAACTTCAT---------------------------------
-----------------------CGCCTATCCCAAAACCTATAAGAACTAATAATAAT--
-------C--C---ACCACTCTTTGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCTTTATTGTTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACACGCATGA---------
>LTR7B_chr16_Sltr_fr_566__chr16_6197078661971275_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTATGAC---------------------------------------------TTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTAAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAACAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTTCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA---------------------------------------------
------------------------------------------------------------
CTTTGTAATCTCCCCCACCCTTAAGAAGGTACTTTGTAA--T------------------
---------------------------------------------------CTCCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACC-CT-G
CCCGCAAAACATTGCTCTTAACTTCAC---------------------------------
-----------------------CGCCTATCCCAAAACTTATAAGAACTGATAATAAT--
-------C--C---ACCACCCTTTGCTGACTCTCTTTTTGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTGT
CTTCACACGGACGTGCATGA---------
>LTR7B_chr17_Sltr_fr_619__chr17_83527728353232__
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCATG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAATAGC--------------------------
---------------------------------T----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA---------------------------------------------
------------------------------------------------------------
CTTTGTAATCTCCCCCACCCTTAAGAAGGTACTTTGTAA--T------------------
---------------------------------------------------CTCCCC---
-------------CA-CCCTT---------GAGAATGTACTCTGTGAGATCCACCCCT-G
CCCGCAAAACATTGCTCTTAACTTCAC---------------------------------
-----------------------TGCCTATCCCAAAACCTATAAGAACTAATGATAAT--
-------C--C---ACCACCCTTTGCTGACTCT--TTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTA--TTT--GGTGGTCT
CTTCACACGGACGCGCATG----------
>LTR7B_chr4_Sltr_fr_1142__chr4_1137507711375536_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTCAC---------------------------------------------TTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGTCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCGTTGTGATTTGTTCCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA---------------------------------------------
------------------------------------------------------------
TTTTGTAATCTCCCCCACCCTTAAGAAGGTACTTTGTAA--T------------------
---------------------------------------------------CTCCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCT-G
CCCGCAAAACATTGCTCTTAACTTCAC---------------------------------
-----------------------CGCCTATCCCAAAACCTATAAGAACTAATGATAAT--
-------C--C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACCCGCACCC
AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGAAGCGCATGA---------
>LTR7B_chr18_Sltr_fr_626__chr18_3195474731955206_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
AATGCATCCAGA------------------------------------------------
-----------------------------TGGCTTCAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCTACAAAAGAAGTAAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA---------------------------------------------
------------------------------------------------------------
TTTTCTAATCTCCCCCACCCTTAAGAAAGTACTTTCTAA--T------------------
---------------------------------------------------CTCCCC---
-------------CA-CCCTT---------GAGAATGTACGTTGTGAGATCCACCCCT-G
CCCGCAAAGCATTGCTCTTAACTTCAC---------------------------------
-----------------------CGCCTATCCCAAAACCTGTAAGAACCAATGATAAT--
-------C--C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGTGAGTGA---------
>LTR7B_chr19_2ltr_int_fr_683__chr19_3626479336265220__
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAATCCATCGCATCC
CCTGTGAC---------------------------------------------TTGAACA
TATACA-CCAGA------------------------------------------------
-----------------------------TGGTCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGACATCAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CTACCATTGTGATTTGTTCCTTCCCCACC
CTATCTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA---------------------------------------------
------------------------------------------------------------
CTTTGTAATCTCCCCCACCCTTAAGATGTTTCTTTGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCGACCCCT-G
TCCGCAAAACATTGCTATCAACTTCAC---------------------------------
-----------------------CACCTATCCCAAAACCTATAAGAACTAATGGTAAT--
-------C--C---ATCTCCCTTTGCTGACTCTCTTTTCAGACTCAGCCCACCTGCACCC
AGTTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGGGCATG----------
>LTR7B_chr21_Sltr_fr_944__chr21_2059293020593358__
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATTGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTAAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAACAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTACCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA---------------------------------------------
------------------------------------------------------------
CTTTGTAATCTCCCCCACCCTTAAGAAGTTTCTTTGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCC-T-G
ACCGCAAAACATTGCTCTTAACTTCAC---------------------------------
-----------------------CACCTAACCCAAAACCTATAAGAACTAATGGTAAT--
-------C--C---ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
CAGTGA-----AA--TAAACAGCCAAGTTTCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACACGCATG----------
>LTR7B_chr2_2ltr_int_fr_860__chr2_3659910036599525_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
C--GTGAC---------------------------------------------TTGCACA
TATACACCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAATAGC--------------------------
---------------------------------C----------TTAA-----GGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA---------------------------------------------
------------------------------------------------------------
CTTTGTAATCTCCCCCACCCTTAAGAAGTTTCTTTGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCT-G
CCCGCAAAACATTGCTCTTAACTTCAC---------------------------------
-----------------------CGCCTGACCCAAAACCTGTAAGAACTAATGATAAT--
-------C--C---ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCATCC
AGGTGA-----AA--TAAACAGCCGTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCACATGA---------
>LTR7B_chr1_Sltr_fr_21__chr1_150640169150640581_+_
-GTCAGGCCTCTGAGCCCAAA-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACACCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATT--GATTTGTTCCTGTCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA---------------------------------------------
------------------------------------------------------------
CTTTGTAATCTCCCCCACCCTTAAGAAAGTTCTTTGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCT-G
CCCGCAAAACATTGCTCTCAACTTCAC---------------------------------
-----------------------CGCCTATCCCAAAACCTATAAGAATTAATGATAAT--
-------C--C---ATCTCCCTTCGCTGACTCTCTTTTCG--------------GCACCC
AGGTGA-----AA--TAAATACCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGCCT
CTTCACACGGACGCACATGA---------
>LTR7B_chr2_2ltr_int_fr_787__chr2_164295826164296258_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATTGCATCC
CCTCTGAC---------------------------------------------TTGCACG
TATACACCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCGCAAAAGAAGTAAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGCTCCTGCCCCACC
CTAACTGAT-------CAAC----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA---------------------------------------------
------------------------------------------------------------
CTTTGTAATCTCCCCCACCATTAAGAAGGTTCTTTGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCATGCCT-G
CCCACAAAACATTGCTCTTAACTTCAC---------------------------------
-----------------------CGCCTAACCCAAAACCTATAAGAACTAATGATAAT--
-------C--C---ATCTCCCTTCGCTGATTCTCTTTTTGGACGCAGCCTGCCTGCACCC
AGGTGC-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGCACATGA---------
>LTR7B_chr2_2ltr_int_fr_896__chr2_7796514077965568_+_
-GTCAGGCCTCTGAGACCAAG-----------------------CCAAGCCATCACATCC
CCTGTGAC---------------------------------------------TTGCACA
TATACATCCAGA------------------------------------------------
-----------------------------TGGTCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAGAAGATGTAAAAATATC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA---------------------------------------------
------------------------------------------------------------
CTTTGTAATCTCCCCTACCCTTAAGAAGGTTCTTTGTAA--T------------------
---------------------------------------------------TCTCTC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCT-G
CCCACAAAACATTGCTCTTAACTTCAC---------------------------------
-----------------------CGCCTATCCCAAAACCTGTAAGAACTAATGATAAT--
-------C--C---ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCTTTACTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGCACATGA---------
>LTR7B_chr5_Sltr_fr_1287__chr5_116947064116947489_+_
-GTCAGGCCTCCGAGCCCAAG-----------------------CCAAGCCATCTCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAATAGC--------------------------
---------------------------------C----------TGAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA---------------------------------------------
------------------------------------------------------------
GTTTGTAATCTTCCC-ACCCTTAAGAAGGTTCTTTGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCT-G
CCCACAAAACATTGCTCTTAACTTCAC---------------------------------
-----------------------CGCCCATCCCAAAACCTGTAAGAACTAATGATAAT--
-------C--C---ATCTCCCTTCGCTGACTC--TTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCATGCTGCTCACACAAAACCTG--TTT--GGTGGTCT
CTTCACACGGACACACATGA---------
>LTR7B_chr2_Sltr_fr_765__chr2_124387363124387821__
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA---------------------------------------------
------------------------------------------------------------
CTTTGTAATCTCCCCCACCCTTAAGAAGGTACTTTGTAA--T------------------
---------------------------------------------------CTCCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACC-CT-G
CCCGCAAAACATTGCTCTTAACTTCAC---------------------------------
-----------------------CGCCTAACCCAAAACCTATAAGAACTAATGATAAT--
-------C--C---ATCTCCCTTCGCTGACTCTCTTTTCGGATTCAGCCCACCTACACCC
AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTAGTCT
CTTCACATGGACGCGCATG----------
>LTR7B_chr5_Sltr_fr_1286__chr5_116761470116761929_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CTTGTGAC---------------------------------------------TTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTAAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAACAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATC---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTGCCCTACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA---------------------------------------------
------------------------------------------------------------
CTTTGTAATCTCCCCCACCCTTAAGAAGGTACTTTGTAA--T------------------
---------------------------------------------------CTCCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACC-CT-G
TCCACAAAACATTGCTCTTAACTTCAC---------------------------------
-----------------------CGCCCATCCCAAAACCTGTAAGAACTAATGATAAT--
-------C--C---ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CCTCACATGGACGCGCATGA---------
>LTR7B_chr3_Sltr_fr_977__chr3_108377864108378321_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAG-CATCGCATCC
CCTGTGAT---------------------------------------------TTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTAAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA---------------------------------------------
------------------------------------------------------------
CTTTGTAATCTCCCCCACCCTTAAGAAGGTACTTTGTAA--T------------------
---------------------------------------------------CTTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACC-CT-G
CCCACAAAACATTGCTCTTAACTTCAC---------------------------------
-----------------------CGCCTAACCCAAAACCTATAAGAACTAATGATAAT--
-------C--C---ATCACCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGATGCACATGA---------
>LTR7B_chrX_Sltr_fr_1828__chrX_7273065772731115_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTAAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAACAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA---------------------------------------------
------------------------------------------------------------
CCTCGTAATCTCCCCCACCCTTAAGAAGGTGCTTTGTAA--T------------------
---------------------------------------------------CTCCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTCAGATCCACC-CT-G
CCCGCAAAACATTGCTCTTAACTTCAC---------------------------------
-----------------------CACCTAACCCAAAACCTGTAAGAACTAATGATAAT--
-------C--C---ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACGCGCATGA---------
>LTR7B_chr12_Sltr_fr_354__chr12_4603590746036335__
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACACCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTGCCCCACT
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA---------------------------------------------
------------------------------------------------------------
CTTTGTAATCTCCCCCACCCTTAAGAAGGTTTGTTGCAA--T------------------
---------------------------------------------------TCTCTC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCT-G
CCCACAAAACATTGCTCTTAACTTCAC---------------------------------
-----------------------CGCCTATCCCAAAATCTATAAGAACTAATGATAAT--
-------C--C---ATCTCCCTTCGCTGACTCTCTTTTTGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACAAGGACGCGCATG----------
>LTR7B_chr20_Sltr_fr_920__chr20_2106036521060793__
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC
CCTGTGAC---------------------------------------------TTGCATG
TATACACCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGATG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA---------------------------------------------
------------------------------------------------------------
CTTTGTAATCTCCCCCACCCTTAAGAAGGTTCTCTGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAATGCACTTTGTGAGATCCACCCCT-G
CCCACAAAACATTGCTCTTAACTTCAC---------------------------------
-----------------------TGCCTAACCCAAAACCTATAAGAACTAATGATAAT--
-------C--C---ATCTCCCTTCGCTGACTCTCTTTTCGAACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACACGCATG----------
>LTR7B_chr3_2ltr_int_fr_996__chr3_128834514128834942__
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------ATGCGCG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGGAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACTATTGTGATTTGTTCCTGCCCCACC
ATAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA---------------------------------------------
------------------------------------------------------------
CTTTGTAATCTCCCCCACCCTTAAGAAGGTTCTTTGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCT-G
CCCACAAAACATTGCTCTTAACTTCAC---------------------------------
-----------------------CGCCTATCCCAAAACCTGTAAGAACTAATGATAAT--
-------C--C---ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGTGCATG----------
>LTR7B_chr7_Sltr_fr_1555__chr7_3465482534655262_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------AATCACAAGAGAAGTGAAAAGGGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC
CTAACTGAT-------CAAG----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA---------------------------------------------
------------------------------------------------------------
CTTTGTAATCTCCCCCACCCTTAAGAAGGTTCTTTGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCT-G
CCCGCAAAACATTGCTCTTAACTTCAC---------------------------------
-----------------------CGCCTATCCCAAAACGTATAAGAACTAATGATAAT--
-------C--C---ACCACCCTTTGCTGACTCTCTTTTCAGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGCTCT
CTTCACACGGACGCGCATGA---------
>LTR7B_chr13_2ltr_int_fr_433__chr13_8391341383913838__
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC
CCTGTGAC---------------------------------------------TTGCAGG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAA---GTAAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC
CTAACTGAA-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA---------------------------------------------
------------------------------------------------------------
CTTTGTAATCTACCCCACCCTTAAGAAAGTTCTTTGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CTGTT---------GAGAATGTACTTTGTGGGATCCACCCCT-G
CCCACAAAACATTGCTCTTAACTTCAC---------------------------------
-----------------------TGCCTATCCCAAAACCTATAAGAACTAATGATAAT--
-------C--C---ACCACCCTTTGCTGACTCTCTTTTTGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCATGGTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCACATG----------
>LTR7B_chr1_Sltr_fr_43__chr1_1995900419959432__
TGCCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TGTACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATACACCAAAGAAGAAAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA---------------------------------------------
------------------------------------------------------------
CTTTGTAATCTCCCCCACCCTTAAGAAGATTCTTTGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CTCTT---------GAGAATGTACTTTGTGAGATCCACCCCT-G
CCCGCAAAACATTGCTCTTAACTTCAC---------------------------------
-----------------------TGCCTATCCCAAAGCCTATAAGAACTAATGATAAT--
-------C--C---ACCACCCTTTGCTGACTCTCTTTTCAGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATG----------
>LTR7B_chr10_Sltr_172__chr10_2345730923457737__
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA---------------------------------------------
------------------------------------------------------------
CTTTGTAATCTCCCCCACTCTTAAGAAGGTTCTTTGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CTCTT---------GAGAATGTACTTTGTAAGATCCACCCCT-A
CCCGCAAAACATTGCTCTTAACTTCAC---------------------------------
-----------------------TGCCTATCCCAAAACCTACAAGAACTAATGATAAT--
-------C--C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGCACGTGCATG----------
>LTR7B_chr5_2ltr_int_fr_1362__chr5_702471702899_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA---------------------------------------------
------------------------------------------------------------
CTTTGTAATCTCCCCCACCCTTAAGAAGGTTCTTTGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGAGCCACCCCT-G
CCCACAAAACATTGCTCTTAACTTCAC---------------------------------
-----------------------TGCCTATCCCAAAACCTATAAGAACTAATGACAAT--
-------C--C---ACCACCCTTTGCTGACTCTCTTTTTGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TACACAGCTTTATTCCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATGA---------
>LTR7B_chr3_2ltr_int_fr_1034__chr3_166829299166829713__
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATTGCATCC
CCTGTGAC---------------------------------------------TTGCATG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAACAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATCTGTTCGTGCCCCACC
CTAACTGAT-------CAA-----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
--------TCTCCCCCACCCTTAAGAAGGTACTCT--AA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCT-G
CCCTCAAAACATTGCTCTTAACTTCAC---------------------------------
-----------------------CACCTATCCCAAAACCTATAAGAACTAATGATAAT--
-------C--C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGTTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTTACATGGACACACATG----------
>LTR7B_chr6_2ltr_int_fr_1476__chr6_7766600077666441__
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTAAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAACAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACTATTGTGATTTGTTCCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA---------------------------------------------
------------------------------------------------------------
CTTTGTAATCTCCCCCACCCTTAAGAAGGTTCTTTGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGACCCACCCCT-G
CCCGCAAAACATTGCTCTTAACTTCAC---------------------------------
-----------------------CGCCTATCCCGAAACCTATAAGAACTAATGATAAT--
-------C--C---ACCACCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTTACATGGACACACATG----------
>LTR7B_chr1_Sltr_fr_84__chr1_237504169237504595__
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCTTCGCATCC
CCTGTGAC---------------------------------------------TTGCATG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CGAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA---------------------------------------------
------------------------------------------------------------
CTTTGTAATCTCCCCCACCCTTAAGAAGGTTCTTTGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCT-G
CCCGCAAAATATTGCTCTTAACTTCAC---------------------------------
-----------------------TGCCTATCCCAAAACCTATAAGAGCTAATGATAAT--
-------C--C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTG-------A--TTAAAAGC-TTATTGCTCACACAAAGCCTG--TTT--AGTAGTCT
CTTCACACAGACGTGCATG----------
>LTR7B_chr13_Sltr_fr_440__chr13_9806185398062318__
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCATG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------A--CACAAAAGAAGTAAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA---------------------------------------------
------------------------------------------------------------
CTTTGTAATCTCCCCCACCCTTAAGAAGGTTCTTTGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAATGTATTTTGTGAGATCCACCCCT-G
CCTGCAAAACATTGGTCTTAACTTCAC---------------------------------
-----------------------CGCCTATCCCAAAACCTGTAAGAACTAATGATAAT--
-------C--C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTG-------A--TTAAAAGC-TTATTGCTCACACAAAGCCTG--TTT--GGTGGTCC
CTTCACATGGATGCGCATG----------
>LTR7B_chr2_Sltr_fr_881__chr2_6407570464076162_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTAAGTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA---------------------------------------------
------------------------------------------------------------
CGTTGTAATCTCCCCCACCCTTAAGAAGTTTCTTTGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACGCCT-G
CCCGCAAAACATTGCTCTTAACTTCAC---------------------------------
-----------------------CGCCTATCCCAAAACCTATAAGAACTAATGATAAT--
-------C--C---ACCAACCTCTGCTAACTCTCTTTTCAGACTCAGCCCGCCTGCACGC
AGGTG-------A--TTAAAAGC-TTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCGTGA---------
>LTR7B_chr8_Sltr_fr_1650__chr8_91850519185479_+_
-GTCAGGCCTCTGAGCACAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------G-----------------------------------------------
------------------------------------------------------------
---------------CACCCTTAAGAAGGTTCTTTGTAA--T------------------
---------------------------------------------------TCTCTC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCT-G
CCTGCAAAACATTGCTCTTAACTTCAC---------------------------------
-----------------------CGCCTAGTCCAAAACCTATAAGAACTAATGATAAT--
-------C--C---ACCAGCCTTTGCTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC
AAGTG-------A--TTAAAAGC-TTATTGCTCACACAAAGCCTG--TTT--GGTGGTTT
CTTCACACGGACGCGCATGA---------
>LTR7B_chr4_Sltr_fr_1245__chr4_7645671176457137__
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAT---------------------------------------------TTGCACG
TATACACCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTACCTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA---------------------------------------------
------------------------------------------------------------
CTTTGTAATCTCCGCCACCCTTAAGAAGGTTCTTTGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCT-G
CCTGCAAAACACTGCTCTTAACTTCAC---------------------------------
-----------------------CGCCTATCCCAAAACCTATAAGAACTAATGATAAT--
-------C--C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTG-------A--TTAAAAGC-TTATTGCTCACCCAAAGCCTA--TTT--GGTGGTCT
CTTTACACGGACGCGCATG----------
>LTR7B_chr19_Sltr_fr_684__chr19_369601369994__
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCGTCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAT
ATT---------------------------------------------------------
-------------------------------CCACTATTGTGATTTGTTTTTGCCCCACC
CTAAGTGAT-------CAAG----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA---------------------------------------------
------------------------------------------------------------
CTTTGTAATGTCCCCCACCCTTAAGAAGGTTCT---------------------------
------------------------------------------------------------
-----------------------------------------TTGCGAGATCCACCCCT-G
CCCGCAAAACATTGCTCTTAACTTCAC---------------------------------
-----------------------CACCTATCCCAAAACCTATAAGAACAATTGATAAT--
-------C--C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCAC-C
AGGCG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--AG--GCTT
CTTCACACGGATGTGCCTG----------
>LTR7B_chr11_Sltr_fr_269__chr11_8019828880198715__
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCTATCCCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTTTTCCTGCCCCATG
CTAACTGAT-------CAGT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA---------------------------------------------
------------------------------------------------------------
CTTCGTAATCTCCCCCACCCTTAAGAAGGTTCTTTGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAGTGTACTTTGTGAGATCCACCCCT-G
CCCACAAAACATTGCTCTTAACTTCAC---------------------------------
-----------------------CGCCTATCCCAAAACCTATAAGAACTAATGATAAT--
-------C--C---ACCACCCTTTGCTGACTCTTTTTTCGGACTCAGCCTGCCTGCACCC
AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACAGGGACGCGCATG----------
>LTR7B_chr16_Sltr_fr_563__chr16_6057739160577788_+_
-GTCAGGCCTCTGAGCCTAAG-----------------------CCAAGCCATCGCATCT
TCTGTGAC---------------------------------------------TTGCACG
TATGCATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGGAACTGAAG------------
------------------------------------------------------------
----------ATCTACAAAAGAAGTAAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATAGTGATTTGTTCCTGCACTACC
TTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA---------------------------------------------
------------------------------------------------------------
CTT-------------------------------TGTAA--T------------------
---------------------------------------------------TCTCCG---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCT-G
CCTGCAAAACATTGCTCTTAACTTCAC---------------------------------
-----------------------CGCCTATCTTAAAACTTGTAAGAACTAATGATAAT--
-------C--C---ACCACATTTTGCTGACTCTCTTTTCGGACTCAGCCTACCTGCACCC
AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACGCACATGA---------
>LTR7B_chr2_2ltr_int_fr_866__chr2_4503975945040152__
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ACT---------------------------------------------------------
-------------------------------CCACCAATGTGATTTGTTCCTGCCCCACC
CTAACTGAT-------TAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA---------------------------------------------
------------------------------------------------------------
CTT-------------------------------TGTAA--T------------------
---------------------------------------------------CTCCCC---
-------------CA-CCCTT---------GAGAATGTACT----GAGATCCACCCCT-G
CCTGCACAACATTGCTCTTAACTTCAC---------------------------------
-----------------------CACCTATCCCAAAACCTATAAGAACTAATGATAAT--
-------C--C---ACCACCCTTTGCTAACTCTCTTTTCGGACTCGGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCTATGTTGCTCACACAAAGCCTG--TTT--GCTGGTCT
CTTCACACGGACGCGCATG----------
>LTR7B_chr16_Sltr_fr_582__chr16_8438100584381395__
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ACT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCGCACT
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA---------------------------------------------
------------------------------------------------------------
CTT-------------------------------TGTAA--T------------------
---------------------------------------------------CTCCCC---
-------------CA-CCCTT---------AAGAAGGTACTCTGAAAGATCCACCCCT-G
CACGCAAAACGT-------AACTTCAC---------------------------------
-----------------------CGCCTATCCCCAAACCTATAATAACTAATGATAAT--
-------C--C---ACCACCCTTTGCCGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATG----------
>LTR7B_chr7_2ltr_int_fr_1549__chr7_2978499229785389_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATTGCATCC
CCTGTGAC---------------------------------------------CTGTACA
TATATATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCCGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA---------------------------------------------
------------------------------------------------------------
CTT-------------------------------TGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCT-G
CCCGCAAAACATTGTTCTTAACTTCAC---------------------------------
-----------------------CGCCTATCCCAAAACCTATAAGAACTAATGATAAT--
-------C--C---ACCACCCTTTGCTGACTCTCTTTTTGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACGCGCATGA---------
>LTR7B_chrX_Sltr_fr_1840__chrX_9069069990691127_+_
-GTCAGGCCTCTGAGACCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACATCCAAA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA---------------------------------------------
------------------------------------------------------------
CTT-------------------------------TGTAA--T------------------
---------------------------------------------------CTCCCC---
-------------CA-CCCTT---------GGGAATGTACTTTGTGAGATCCACCCCT-A
CCCGCAAAACATTGCTCTTAACTTTAT---------------------------------
-----------------------CGCCTATCCCAAAACCTATAAGAACTAATGATAAT--
-------C--C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATGA---------
>LTR7B_chrY_Sltr_fr_1894__chrY_42728664273294_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACA
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GCA---------------------------------------------
------------------------------------------------------------
CTT-------------------------------TGTAA--T------------------
---------------------------------------------------CTCCCT---
-------------CA-CCCTT---------GGGAATGTACTTTGTGAGATCCACCCTT-A
CCCGTAAAACATTGCTCTTAACTTTAT---------------------------------
-----------------------CGCCTATCCCAAAACCTATAAGAACTAATGATAAT--
-------C--C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGGTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATGA---------
>LTR7B_chr1_2ltr_int_137__chr1_7887218778872619_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CTTGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------CGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCTCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAA-T-----------------------------------
------------------------CTCCCCCACCCTTAAG--------------AAGGCT
------------------------------------------------------------
--------------------------------------CTTTGTAAT----TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGCGATCCACCCCTTG
TCCACAAAACATTGCTCCTAATTCCAC---------------------------------
-----------------------CATCTACCCCAAAATCTATAAGAACTAATGATAAT--
-------CC-C---ATCACACTTTGCTGACTCCTTTTTCAGACTCAGCCAGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
TTTCACATGGACACGTGAGA--CA-----
>LTR7B_chr13_2ltr_int_fr_411__chr13_4887202848872459__
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACA
TGTACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAACAACTAAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAA-T-----------------------------------
------------------------CTCCCCCACCCTTAAG--------------AAGATT
------------------------------------------------------------
--------------------------------------CTTTGTAAT----TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG
TGCACAAAACATTGCTCCTAACTCCAC---------------------------------
-----------------------CGCCTA-CCCAAAACCTGTAAGAACTAATGATAAT--
-------CC-C---ATCACCCTTTGCTGACTCCTTTTTTAGACTCAGCCTGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACATAAAGCCTG--TTT--TGTTGTCT
CTTCACACAGATGTGTGAGA--C------
>LTR7B_chr4_Sltr_fr_1174__chr4_142365974142366339_+_
----------------------------------------------------TCATATCT
CCTGTGAC---------------------------------------------CTGCACA
TGTATGTCCAGA------------------------------------------------
-----------------------------TCACCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTAATTTGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAA-T-----------------------------------
------------------------CTCCCTCACCATTAAG--------------AAGGTT
------------------------------------------------------------
--------------------------------------CTTTGTAAT----TCTCCC---
-------------CA-CACTT---------CAGAATGTACTTTGTGAGATCCACCCCCTG
CCTGCAAAACATTGCTTCTAACTCCAC---------------------------------
-----------------------CGCCTATCCCAAAACCTATAAGAACTAATGATAAT--
-------CC-----ACCACCCTTTGCTGACTCCTTTTTCGGACTCAGCCGGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACAAAAA--------------------
-----------------------------
>LTR7B_chr14_2ltr_int_fr_475__chr14_7558607175586497__
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTCTGAC---------------------------------------------TTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TCGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAA---AGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCATCATTGTGATTTGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAA-T-----------------------------------
------------------------CTCCCCCACCCTTAAG--------------AAGGTT
------------------------------------------------------------
--------------------------------------CTTTGTAAT----TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCACTG
TCTGCAAAACATTGCTCCTAAC-CCAC---------------------------------
-----------------------CGCCTATCCCAAAACCTGTAAGAATTAATGATAAT--
-------TC-C-----CGCCCTTTGCTGACTCCTTTTTCGGATTCAGCCTGCCTGCACCC
AGGTGA-----AA--TAAGCAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACGTGGATGCGTGAGA--C------
>LTR7B_chr15_Sltr_498__chr15_3437606134376491_+_
-GTCAGGCCTGTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCAGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACGAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCATCATTGTGATTTGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAG-T-----------------------------------
------------------------CTCCCCCACCCTTGAG--------------AAGGTT
------------------------------------------------------------
--------------------------------------CTTTGTAAT----TCTCCC---
-------------CA-CCCTT---------AAGAATGTACTTTGTGAGATCCACCC-CTG
CCCGCAAAACATTGCTCCTAACTCCAC---------------------------------
-----------------------CGCCTATCCCAAAACCTGTAAGAACTAATGATAAT--
--------C-C---ACCACCCTTTGCTGACTACTTTTTTGGACTCAGCCCGCCTACACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCATATGGACACGAGAGA--CA-----
>LTR7B_chr10_Sltr_163__chr10_118963598118964030__
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CAGCATG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCTACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAA-T-----------------------------------
------------------------CTCCCCCACCCTTAAG--------------AGGGTT
------------------------------------------------------------
--------------------------------------CTTTGTAAT----TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGAGCCACCCTCTG
CCCGAAAAACATTGCTCCTAACTCCAC---------------------------------
-----------------------CGCCTATCCCAAAACCTATAAGAACTAATGATAAT--
-------CC-C---ACCACCCTTTGCTGACTCCTTTTTCGGACTCAGCCCCCCCGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCGCAAAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACAGGTGAGA--C------
>LTR7B_chr10_Sltr_191__chr10_6590417165904599__
TGTCAGTCCTCTGAGCTCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------GTGCACA
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATA----------------------------
--------------------------------------------------------TGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTG----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------TAAT----CTCCCC---
-------------CA-CCCTT---------GAGAATGTACTTCATGAGATCCACCCCCTG
CCCGCAAAACATTGCTCCTAACTCCAC---------------------------------
-----------------------CACCTATCCCAAAACCTATAAGAACTAATGATAAT--
-------C--C---ACCACCCTTTGCTGACTCCTTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AG--TAAACAGACTTCTTGCTGACACAAAGCCTG--CTT--GGTGGTCT
CCTCACACGGATGCGTGAGA--C------
>LTR7B_chr7_Sltr_1539__chr7_150461858150462322__
TGTCAGGCCTCTGAGCTCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------ATGCACA
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTAATTAAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTTA-T-----------------------------------
------------------------CTCCCCCACCCTTAAG--------------AAGGTT
------------------------------------------------------------
--------------------------------------CTTTATAAT----CTCCCC---
-------------TA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG
CCCACAAAACACTGCTCCTAACTCCAC---------------------------------
-----------------------CGCCTATCCCAGAACCTATAAGAACTAATGATAAT--
-------CC-C---ACCACCCTTTGCTGACTCCTTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCTTCTTGCTCACACAAAGCCTG---TT--GGTGGTCT
CTACACATGGACATGTGAGA--C------
>LTR7B_chr2_Sltr_805__chr2_188230383188230846__
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACA
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATACACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAA-T-----------------------------------
------------------------CTCCCCCACCCTTAAG--------------AAGGTT
------------------------------------------------------------
--------------------------------------CTTTGTAAT----CTCCCC---
-------------AA-CCCTT---------GAGCATGTACTTTGTGAGATCCACCCCCTG
CCCACAAAACATTGTTCCTAACTCCAC---------------------------------
-----------------------TGCCTATCCCAAAACCTATAAGAACTAATGATAAT--
-------CC-C---ACCACCCTTTGCTGACTCCTTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAATAGCCTTGTTGCTCACACAAAACCTG--TCT--GGTGGTCT
CTTCACATGGACACGTGAGA--C------
>LTR7B_chr1_Sltr_2__chr1_103965565103966003__
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATTATATTC
CTTTTGAC---------------------------------------------CTGCATG
TGTACATCCAGG------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAA------------
------------------------------------------------------------
----------ATTCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAA-T-----------------------------------
------------------------CTCCCCCACCCTTAAG--------------AAGGTT
------------------------------------------------------------
--------------------------------------CTTTGTAAT----TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTGTGTGAGATCCATCCCCTG
CCCACAAAACATTGCTCCTAACTCCAC---------------------------------
-----------------------AGCCGATCCCAAAACCAATAAGAACTAATGATAAT--
-------CC-C---ATCTCCCTTCGCTGACTCCCTTTTCAGACTCAGCCTGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACACGTGAGA--C------
>LTR7B_chr3_Sltr_992__chr3_125641484125641918__
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
C-----------------------------------------------------------
------------------------------------------------------------
---------------------------------CTGAAGCAATTGAAG------------
------------------------------------------------------------
----------ATCCACGAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAA-T-----------------------------------
------------------------CTCCCCCACCCTTAAG--------------AAGGTT
------------------------------------------------------------
--------------------------------------CTTTGTAAT----CTCCCC---
-------------CA-CCATT---------GAGAATGTACTTTGTGAGATCCACCCCCTG
CCCACAAAACATTGCTCCTAACTCCAC---------------------------------
-----------------------TGCCTATCCCAAAACCTATAAGAACTAATGATAAT--
-------CC-C---ACCACCCTTTGCTGACTCCTTTTTTGGACTCAGCCTACCTGCACCC
AGGTGC-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--T-T--GGTGGTCT
CTTCACACGGACGCGTGTGA--C------
>LTR7B_chrX_Sltr_1788__chrX_2343814023438568__
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCAAG
TAGACATCCAAA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------CTCCAGAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
AAT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAA-T-----------------------------------
------------------------CTCTCCCACCCTTAAG--------------AAGGTT
------------------------------------------------------------
--------------------------------------CT--------------------
--------------A-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG
CCCCCAAAACTTTGCTCCTAACTCCAC---------------------------------
-----------------------CGCCTATCCCAAAACCTATAAGAACTAATGATAAT--
-------CC-----ACCACCCTTTGCTGACTCCTTTTTTGGACTCAGCCTGCCTGCACCC
AGGTGA-----AA--TAAACAGCTTTGTTGCTCACATAAAGCCTG--T-T----TGGTCT
CTTCACACAGACACGTGAGA--C------
>LTR7B_chr3_Sltr_1115__chr3_79333767933840__
TGTAAGGCCTCTGAGCCCAAG-----------------------CTAAACCATCATATCC
CCTGTGAC---------------------------------------------CTGCACA
TATACATCCAGG------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAA------------
------------------------------------------------------------
----------GTCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------T----------TTAA----CTGATGAC
GTT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTTCTTCGTAA-T-----------------------------------
------------------------CTCCCCGACCCTTAAG--------------AAGGTT
------------------------------------------------------------
--------------------------------------CTTTGTAAT----CTCCCG---
-------------CA-CCCTT---------GAGAATGTACTCTGTGAGATCCACCCCCTG
CCCACAAAACATTGCTCCTAACTCCAC---------------------------------
-----------------------CGCCTATCCCAAAACCTATAAGAACTAATGATAAT--
-------CC-C---ACCACCCTTTGCTGACTCCTTTTTTGGACTCAGCCTGCCTGCACCC
AGGTGA-----AA--TAAACAACCTTGTTGCTCACACAAAGCCTG--T-T--GGTGGTCT
CTTCACACGGACATGCGTGA--C------
>LTR7B_chr19_Sltr_fr_713__chr19_65058126506242_+_
--TCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATTGTAACC
CCTATGAC---------------------------------------------CTGCTCG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAAAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTGCGGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAA-T-----------------------------------
------------------------CTCCCCCACCCTTAAG--------------AAGGTT
------------------------------------------------------------
--------------------------------------CTTTGTAAT----TCTCCC---
-------------CA-CTCTC---------AAGAATGTACTTTGTGAGATCCAC-CCCTG
CCCCCAACACATTGCTCCTAACTCCAC---------------------------------
-----------------------CGCCTCTCCCAAAACCTATAAGAACCAATGATAAT--
-------CC-C---ACCACCCTTTGCTGACTCCTTTTTCCCACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGCCT
CTTCACACGGACACGTGAGA--CA-----
>LTR7Y_chr1_Sltr_fr_129__chr1_9465942894660299_+_
-GTCACGCCTCTGAGCCCAAG-----------------------CTAAGTCATCATATCC
CCAATGAC---------------------------------------------CTGCATG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAA-T-----------------------------------
------------------------CTCCCCCACCCTTAAG--------------AAGGTT
------------------------------------------------------------
--------------------------------------CTTTGCAAT----TCTCCC---
-------------CA-CCCTT---------AAGAATGTACTTTGTGAGATCCACGCCCTG
ACCCCAAAACATTGCTCCTAACTCCAC---------------------------------
-----------------------CGCCTATCCCAAAACCTATAAGAACCGATGATAAT--
-------CC-C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC
AGGTGA-----AA--TAAACAGCATTTTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACACGTGAGA--CA-----
>LTR7B_chr16_Sltr_581__chr16_7841327178413703__
TGTCAGGCCTCTGAGCCCAGG-----------------------CTAAGCCATCATATCC
CCAGTGAC---------------------------------------------CTGCTCG
TATGCATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCCCCATTGTGATTTGCTTCTGTCCCTAC
CTAACTGAT-------CAAC----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAA-T-----------------------------------
------------------------CTCCACCACCTTTAAG--------------AAGGTT
------------------------------------------------------------
--------------------------------------CTTTGTAAT----TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCGCTG
CCCCAAAAACATTGCTCCTAACTCTAC---------------------------------
-----------------------CGCCTATGCCAAAACCTCTAAGAACTAATGACAAT--
-------CC-C---ATCACCCTTTGCTGACTCCTTTTTCAGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGTTCACACAAACCCTG--TTT--GGTGGTCT
CTTCACATGGACACGTGAGA--C------
>LTR7B_chr13_Sltr_424__chr13_6262416862624599_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CGAAGCCATCATATCC
CCAGTGAC---------------------------------------------CTGCACA
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAGCTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTAATTTGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAA-T-----------------------------------
------------------------CTCCCCCACCCTTAAG--------------AAGGTT
------------------------------------------------------------
--------------------------------------CTTTGTAAT----TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG
CCCGCAAAACATTGCTCCTAACTCCAC---------------------------------
-----------------------CGCCTGTCCCAAAACCTATAAGAACTAATGATAAT--
--------C-C---ACCACCCTTTGCTGAGTCCTTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCAGACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACACATGAGA--CA-----
>LTR7B_chr18_Sltr_638__chr18_5360013553600566__
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCAGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAAGAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTAATTTGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GCACTTTGTAA-T-----------------------------------
------------------------CTCGCCCACCCTTAGG--------------AAGTTT
------------------------------------------------------------
--------------------------------------CTTTGTAAT----TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCGACCACCTG
CCCGCAAAACATTGCTCCTAACTCCAC---------------------------------
-----------------------TGCCTATCCCAAAACCTATAAGAACTGATGATAAT--
--------C-C---ATCACCCTTTGCTGACTCCTTTTTCGGATTCAGCCCACCTGCACCC
AGATGA-----AA--TAAACAGACTTGTTGCTCACACAAAGCCTG--TTT--GATGGTCT
CTTCACACGGATACATGAGA--C------
>LTR7B_chr5_Sltr_fr_1337__chr5_1736203817362479__
-GTCAGGCCTCTGAGCCCAAG-----------------------CGAAGCCATCATATCC
CC-GCGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCATAAAAGAACTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATAAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTAATTTGTTTCTGCCCCACC
GTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTGA-T-----------------------------------
------------------------CTCCCCCACCTTTAAG--------------AAGCTT
------------------------------------------------------------
--------------------------------------CTTTGTAAT----TCTCCC---
-------------CA-CCCTT---------GAGAACGTACTTTGTGAGATCCACCCCTTG
CCTGCAAAACATTGCTCCTAACTCCAC---------------------------------
-----------------------CGCCCATCCCAAAACCTATAGGAACTCATGATAAT--
-------CC-C---ATCACCCTTTGTGGACTCCTTTTTCAGACTCAGCCTGCCTGCACCT
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--T-T--GGTGG--T
CTTCACACGGATGT---------------
>LTR7B_chr4_Sltr_1141__chr4_112755344112755771__
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCAGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTAATTTGTTTCTGCCCCACC
----CTGAT-------AAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAA-T-----------------------------------
------------------------CTCCCCCACCCTTAAG--------------AAGTTT
------------------------------------------------------------
--------------------------------------CTTTATAAT----TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCC-TG
CCCGCAAAACGTTACTCCAAACTCTAC---------------------------------
-----------------------CGCCTATCCCAAAACCTGTAAGAACTAATGATAAT--
-------CC-C---ACCACCCTTTGCTGACTCCTTTTTCGGACTCAGCCTGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACATGTGAGA--C------
>LTR7B_chr3_Sltr_fr_1039__chr3_170032497170032918_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCGTCATATCC
CCAGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------CGGCCTTAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACGAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTATTGCTGCCCCAAC
CTGACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAA-T-----------------------------------
------------------------CTCCCCCACCCTTAAG--------------AAGGTT
------------------------------------------------------------
--------------------------------------CTTTGTAAT----TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCC-TG
CCCGCAAAACATTGCTCCTAACTCCAC---------------------------------
-----------------------CGACTATCCCAAAACCTGTAAGAACTAATGATAAT--
--------C-C---ACCATCCTTTGCTGACTCCTTTTTCGGACTCAGCCCACCTGCACCC
AGGT-A-----AA--TAAACAGCCTTGTCGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGATAC---------------
>LTR7B_chr6_2ltr_int_fr_1390__chr6_117664773117665200__
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCAGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCAC---AGAAGTGAAAATAGC--------------------------
--------------------------------------------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGTCTCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
---------------------------------------------------------GTT
------------------------------------------------------------
--------------------------------------CTTTGTAAT----TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCC-CTG
CCCCCAAAACATTGCTCTTAACTCCAC---------------------------------
-----------------------CACCTATCCCAAAACCTATAAGAACCAATGATAAT--
-------CC-C---ACCACCCT-TGCTGACTCCTTTTTCAGACTCAGCCCACCAGCACCC
AGTTGA-----AA--TAAACAGCCATGTTGCTCACAGAAAGCCTG--TTT--GGTGATCT
CTTCACACGGACACATGAAA--C------
>LTR7B_chr3_Sltr_1077__chr3_3346348533463944__
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCAGTCAC---------------------------------------------C-GCACA
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCAC---AGAAGTGAAAATAGC--------------------------
--------------------------------------------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CTACCATTGTGATTTGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
---------------------------------------------------------GAA
------------------------------------------------------------
--------------------------------------CTTTATAAT----CTCCCC---
-------------CA-TCCTT---------AAGAATGTACTTTGTGAGATCCACCCCCTG
CCCCCAAAACATTGCTCTTAACTCCAC---------------------------------
-----------------------CGCCTATCCCAAAACCTATAAGAACCAATGATAAT--
-------CC-C---ACCACCCT-TGCTGACTCCTTTTTCAGACTCAGCTCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACACATGAGA--C------
>LTR7B_chr1_Sltr_52__chr1_211528463211528890__
TGTCAGACCTCAGAGCCTAAG-----------------------CTAAGCCATCATATCC
CCAGTGAC---------------------------------------------CTGCTTG
TGTACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCAC---AGAAGTGAAAATAGC--------------------------
--------------------------------------------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
---------------------------------------------------------GTT
------------------------------------------------------------
--------------------------------------CTTGATAAT----TCGCCC---
-------------CA-CCCTT-----------GAATGTACTTTGTGAGATCCACCCTCTG
CCCCAAAAACATTGCTCTTAACTCCAC---------------------------------
-----------------------CTCCTATCCCAAAACCTATAAGAACCAATGGTAAT--
-------CC-C---ACAACCCT-TGCTGCCTCCTTTTTTGGACTCAGCCTGCCTGCACCC
AGGTGA-----AA--TAAACAGCTATGCTGCTCACACAAAGCCTG--TTT--GGTGATCT
GTTCACACGGACACGTGAGA--C------
>LTR7B_chr17_Sltr_601__chr17_5501853155018959__
TGTCAGGGCTCTGAGCCTAAG-----------------------CTAAGCCATCATATCC
CCAGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCAC---AAAAGTGAAAATAGC--------------------------
--------------------------------------------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
---------------------------------------------------------GTT
------------------------------------------------------------
--------------------------------------CTTTGTAAT----TCTCCC---
-------------CA-TCCTT---------GAGAATGTATTTTGTGAGATCCACCCCCTG
CCCCCAAAACATTGCTCTTAACTCCAC---------------------------------
-----------------------CGCCTATCCCAAAACCTGTAAGAACCAATGATAAT--
-------CC-C---ACCACCCT-TGCTGACTCCTTTTTTGGACTCAGCCTGTTTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTTAAACAAAGCCTC--TTT--GGTGGTCT
CTTCACACGGATGCATGAAA--C------
>LTR7B_chr5_Sltr_fr_1320__chr5_149607515149608267__
TGTCAGGCCTCTGAGCACAAG-----------------------CTAAGCCATCATATCC
CCAGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCAC---AGAAGTGAAAATAGC--------------------------
--------------------------------------------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
---------------------------------------------------------GTT
------------------------------------------------------------
--------------------------------------TTTTATAAT----TCTCCC---
-------------CA-CCGTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG
CCCCCAAAACATTGCTCTTAACTCCAC---------------------------------
-----------------------CGCCTATCCCAAAACCTGTAAGAACCAATGATAAT--
-------CC-C---ACCACCCT-TGCTGACTCCTTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAAGAGCCTTGTTGCTCACACAAATCCTG--TTT--GGTGGTCT
CTTCACATGGATGCGTGAGA--C------
>LTR7B_chr10_Sltr_190__chr10_61935616194021__
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCAGTGAC---------------------------------------------CTGCACA
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATTCAC---AGAAGTGAAAATCGC--------------------------
--------------------------------------------TTAA----CTGATGAT
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCAAC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
---------------------------------------------------------GTT
------------------------------------------------------------
--------------------------------------CTTTGTAAT----TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTCTGAGATCCACCCACTG
CCCCCAAAACATTGCTCTTAACTCCAC---------------------------------
-----------------------CGCCTATCCCAAAACCTATAAGAACCAATGATAAT--
-------CC-C---ACCACCCT-TGCTGACTCCTTTTTTGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TCAACAGCCTTGTTGCTCACATAAAGCCTG--TTT--GGCAGTCT
CTCCACACGGACACCTGAGA--C------
>LTR7B_chr3_Sltr_982__chr3_1127048111270941__
TGTCAG-TCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCAGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCTTGCAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCGC---AGAAGTGAAAATAGC--------------------------
--------------------------------------------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
---------------------------------------------------------GTT
------------------------------------------------------------
--------------------------------------CTTTGTAAT----TCTCAC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTA
CCCCCAAAACATTGCTTTTAACTCCAC---------------------------------
-----------------------CGCCTATCCCAAAACCTATAAGAACCAATGATAAT--
-------CC-C---ACCACCCT-TGCTGACTCTCTTTTTGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTAGTCT
CTTCACACGGACACATGAGA--C------
>LTR7B_chr11_Sltr_255__chr11_6448384164484301__
TGTCAGACCTCTGAGCCTAAG-----------------------CTAAGCCATCATACCC
CCAGTGAC---------------------------------------------CTGCACT
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ACCCAC---AGAAGTGAAAATAGC--------------------------
--------------------------------------------TTAA----CTGATGGC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCTCCACC
CTAACTGAT-------CAAC----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
---------------------------------------------------------GTT
------------------------------------------------------------
--------------------------------------CTTTGTAAT----TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTA
CCACCAAAACATTGCTCTTAACTCCAC---------------------------------
-----------------------CACCTATCCCAAAACCTATAAGAGCTAATGATAAT--
-------CC-C---ACCACCCT-TGCTGACTCCTTTTTTGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACACGTGAAA--C------
>LTR7B_chr3_Sltr_1009__chr3_142284604142285031__
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCAGTGAC---------------------------------------------CTGCACA
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCAC---AGAAGTGAAAATAGC--------------------------
--------------------------------------------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACA
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
---------------------------------------------------------GTT
------------------------------------------------------------
--------------------------------------GTTTGTAAT----TCTCCT---
-------------CA-CCCTT---------GAGAAGTTACTTTGTGAGATCCACCCCCTG
TCCCCAAAACATCGCTCTTAACTCCAC---------------------------------
-----------------------CGCCTATCCCAAAACCTATAAGAACTAATGATAAT--
-------CC-C---ACCACCCT-TGCTGACTCGTTTTTTGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACACGTGAAA--C------
>LTR7B_chr18_Sltr_628__chr18_3256929032569717_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCGTCATATCC
CCAGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCAC---AGAAGTGAAAATAGC--------------------------
--------------------------------------------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------TCACTATTGTGATTTGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
---------------------------------------------------------GTT
------------------------------------------------------------
--------------------------------------ATTTGTAAT----TCTCCC---
-------------CA-CTCTT---------GAGAATGTACTTTGTGAGATCCA-CCGCTG
CCCCCAAAACATTGCTCTTAACTCCAC---------------------------------
-----------------------CGCCTATCCCAAAATCTATAAGAACTAATGATAAT--
-------CC-C---ATCACCCT-TGCTGACTCCTTTTTCGGACTCCGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCTTTGTTGCTCACACAAAGCCTG--TTT--GGTGATCT
CTTCACACGGACACGTGAAA--CA-----
>LTR7B_chr3_Sltr_fr_984__chr3_112989563112989980_+_
--TCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCAGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------AGGCC---------TGAAG------------
------------------------------------------------------------
----------ATCCAC---AGAAGGGAAAACAGC--------------------------
--------------------------------------------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCTATC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
---------------------------------------------------------GTT
------------------------------------------------------------
--------------------------------------CTTTGTAAT----TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCTACCCTCTG
CCCCTAAAACATTGCTCTTAACTCCAC---------------------------------
-----------------------CGCCTGTCCCAAAACCTATAAGAACTAATGATAAT--
-------CC-C---ACCACCTT-TGCTGACTCTCTTTTGGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGACTG--TTT--GGTGATCT
CTTCACATGGATGAGTGAAA--CA-----
>LTR7B_chr6_Sltr_1474__chr6_6979740069797828_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCAGTGAC---------------------------------------------CTTCACG
TATACATCCAGC------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCAC---AGAAGTGAAAATAGC--------------------------
--------------------------------------------TTAG----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
---------------------------------------------------------GTT
------------------------------------------------------------
--------------------------------------CTTTGTAAT----TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCTACCCCCTA
CCCCCAAAACATTGCTCTTCACTCCAC---------------------------------
-----------------------CTCCTATCCGAAAAACTGTAAGAACCAATGATAAT--
-------CC-C---ACCACCTT-TGCCGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
ATGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCATGAGA--CA-----
>LTR7B_chr3_Sltr_1000__chr3_129219362129219790_+_
-GTCAGGCCTCTGAGCCCTAG-----------------------CTAAGCCATCATATCC
CCAGTGAC---------------------------------------------TTGCACA
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCAC---AGAAGTGAAAATAGC--------------------------
--------------------------------------------TTAA----CCGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
---------------------------------------------------------GTT
------------------------------------------------------------
--------------------------------------CTTTGTAAT----TCTCCC---
-------------TA-CCTTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG
CCCCCAAAACATTGCTCCTAACTCTAC---------------------------------
-----------------------AGCCTATCCCAAAACCTATAAGAACTAATGATAAT--
-------CC-C---ACCGCCCTGTGCTAACTCCTTTTTCGGACTCAACCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAGAGCCTG--TTT--GGTGGTCT
CTTCACCCGGACACATGAGA--CA-----
>LTR7B_chr7_2ltr_int_fr_1506__chr7_106533200106533658__
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCAGTGAC---------------------------------------------CTGCACA
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCAC---AGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAG----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTAACTGAT-------CAGT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAA-C-----------------------------------
------------------------CTCCCCCACCTTTAAG--------------AAGGTT
------------------------------------------------------------
--------------------------------------CTTTGTAGT----TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGATATCCACCCCCTG
CCCCCAAAACATTGCTCTTAACTCCAC---------------------------------
-----------------------TGCCTATCCCAAAACCTATAAGAACCAATGATAAT--
-------TC-C---ACCACCCTTTGCT---CTCTTTTTCAGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACACGTGAGA--C------
>LTR7B_chr15_Sltr_509__chr15_5201712952017591__
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCGTATCC
CCAGTGAC---------------------------------------------CTGCACA
TATACATCCAGA------------------------------------------------
-----------------------------TGACCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCAC---AAAAATGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCATCATTGTGATTTATTTCTGCCCCAAC
CTAACTGAT-------CAGT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAA-T-----------------------------------
------------------------CTCCCCCACCCTTAAG--------------AAGGTT
------------------------------------------------------------
--------------------------------------CTTTGTAAC----TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG
CCCCCAAACCATTGCTCTTAACTCCAC---------------------------------
-----------------------TGCCTATCCCAAAACCTGTAAGAACTAATGATAA---
-------TC-C---ACCACCCTTTGCTGACTCCTTTTTCAGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTTTTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACACGTGAGA--C------
>LTR7B_chr7_Sltr_1540__chr7_150887243150887702__
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCAGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAAATGAAG------------
------------------------------------------------------------
----------ATCCAC---AAAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
GTAATTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAA-T-----------------------------------
------------------------CTCCCCCACCCTTAAG--------------AAGGTT
------------------------------------------------------------
--------------------------------------CTTTGTAAT----TGTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCATCCC-TG
CCCCTAAAACATTGCTCTTAACTCCAC---------------------------------
-----------------------CTCCTATCCCAAAACCTATAAGAACCAATGATAAT--
-------CC-C---ACCACCCTTTGCTGACTGTCTTTTCAGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTACTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACTGACGCATGAGA--C------
>LTR7B_chr12_Sltr_355__chr12_4603657946037041_+_
-GTCAGGCCTCTGAGCCTAAG-----------------------CTAAGCCATCATATCC
CCAGTGAC---------------------------------------------CTGCAGG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAA-AAAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
TTT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTATTTCTGTCCCAAC
CTAACTGAT-------CTAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAA-T-----------------------------------
------------------------CTCCCCCACCCTTAGG--------------AAGGTT
------------------------------------------------------------
--------------------------------------CTTTATAAT----CTTCCC---
-------------CA-CCCTT---------AAGAAGATTCTTTGTGAGATCCGCCCCATG
CCCTCAAAACATTGCTCTTAACTCCAC---------------------------------
-----------------------CGCCTATTCCAAAACCTATGAGAACCAATGATAAT--
-------CC-----ACCACCCTTTGCTGACTCCTTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACACATGAAA--CA-----
>LTR7B_chr14_Sltr_465__chr14_5095272050953181_+_
-GTCAGGCCTCTGAGCCTAAG-----------------------CTAAGCCATCATATCC
CCAGTGAC---------------------------------------------CCGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCTTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCATAAAAAAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------TCACCATTGTGATTTATTTCTGCCACAAC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAA-T-----------------------------------
------------------------CTCCCTCACCCTTAGG--------------AAGGTT
------------------------------------------------------------
--------------------------------------CTTTATAAT----CTCCCC---
-------------CA-CCCAT---------AAGAAGGTTCTTTGTGAGATCCACTCC-TG
CCCCCAAAACATTGCTCCTAACTCCAC---------------------------------
-----------------------CGCCTATCCCCAAACCTGTAAGAACTAATGATAAT--
-------CC-----ACCACCCTTTGCTGACTCCTTTTTCAGACTCAGCCCACCTGTACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT---GTGGTCT
CTTCACACAGACACATGAAA--CA-----
>LTR7B_chr2_Sltr_821__chr2_200862214200862677_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCAGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAAAAGTAAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTATTTCTGCCCCAAC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATACTTTGTAA-T-----------------------------------
------------------------CTCCCCCACCCTTAGG--------------AAGGTT
------------------------------------------------------------
--------------------------------------CTTTATAAT----CTCCCC---
-------------CA-CCCTT---------AAGAAGGTTCTTTGTGAGATCCGCCCCCTG
CTCCCAAAACATTGCTCTTAACTCCAC---------------------------------
-----------------------CGCCTATCCCAAAACCTATAAGAACTAATGATAAT--
-------CC-----ACCACCCTTTGCCGACTCCTTTTTCTGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTA---GTGGTCT
CTT--CACAGACACGTGAAA--CA-----
>LTR7B_chr4_Sltr_1253__chr4_8453845084538883_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCAGTGAC---------------------------------------------CCACACG
TATATATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTATTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAA-T-----------------------------------
------------------------CCCCCCCACCCTTAAG--------------AAGGTT
------------------------------------------------------------
--------------------------------------CTTTGTAAT----TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG
CCTGCAAAACATTGATCCTAACTCCAC---------------------------------
-----------------------CGCCTATCCCCAAACCTATAAGAACTAATGATAAT--
-------CC-----ACCACCCTTTGCTGACTCCTTTTTCGGACACAGCCTGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGATGCATGAAA--CA-----
>LTR7B_chr8_Sltr_1646__chr8_8548992285490353_+_
-GTTAGGCCTCTAAGCCCAAG-----------------------CTAGGCCATCATATCC
CCAGTGAC---------------------------------------------CTACACA
TATACATCTAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTATTTCTGCCCCAAC
CTAACTGAT-------CAGT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAA-T-----------------------------------
------------------------CTCCCCCACCCTTAAG--------------AAAGTT
------------------------------------------------------------
--------------------------------------CTTTGTAAT----TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCATCCCCGG
CCTTCAAAACATTGCTCCTAACTCCAC---------------------------------
-----------------------CATCTATCCCAAAACCTATGAGAACTAACGATAAT--
-------CC-----ACCACCATTTGCTGACTCCTTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGTCATGTTGCTCACGCAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACACGTGAGA--CA-----
>LTR7B_chr21_Sltr_948__chr21_2862146928621901__
TGTCAGGCCCCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCAGTGAC---------------------------------------------CTGCACA
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAAAAGTGAAAACAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTATTTCTGCCCCAAC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATACTTTGTAA-T-----------------------------------
------------------------CTCTCCCACCCTTAAG--------------AAGGTT
------------------------------------------------------------
--------------------------------------CTTTGTAAT----TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG
CCCCCAAAACATTGCTCTTAATTCCAC---------------------------------
-----------------------CGCCTATCCCAACACCTATAAGAACCAATGATAAT--
-------CC-C---ACCACCCTTTGCTGACTCCTTTTTTGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGTGAAA--C------
>LTR7B_chrX_Sltr_1767__chrX_134945033134945465_+_
-GTTAGGTCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCAGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAATCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAAAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTATTTCTGCCCCAGC
CTAACTGAT-------CAAA----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAA-T-----------------------------------
------------------------CTCCCCCACCCTTAGG--------------AAGGTT
------------------------------------------------------------
--------------------------------------CTTTATAAT----CTCCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCGCCCCGTG
CCCCCAAAACATTGCTCTTAACTCCAC---------------------------------
-----------------------CGCCTATCCCAACACCTATAAGAACCAATGATAAT--
-------CC-C---ACCACACTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCAAACAAAGCCTG--TTT--GGTTGTCT
GTTCACACGGATGCGTGAGA--CA-----
>LTR7B_chr2_Sltr_870__chr2_5397333953973802_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCAGTGAC---------------------------------------------CTGCATG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAAAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATAAC
ATT---------------------------------------------------------
-------------------------------TCACCATTGTGATTTGTTTCTGCCCCACC
CTAACAGAT-------GAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAA-T-----------------------------------
------------------------CTCCCCCACCCTTAGG--------------AAGTTT
------------------------------------------------------------
--------------------------------------CTTTGTATT----TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG
CCCCCAAAACATTGCACTTAACTCCAC---------------------------------
-----------------------CACCTATTCCAAAACCTATAAGAACTAATGGTAAT--
-------CC-C---AACACCCTTTGCTGACTCCTTTTTCAGACTCAGCCTGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCCCACGGACGCGCGAGA--CA-----
>LTR7B_chr1_Sltr_fr_110__chr1_4533635445336787_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
TCAGTAAC---------------------------------------------CTGCACT
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCTACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATCAC
ATT---------------------------------------------------------
-------------------------------CCACCACTGTGATTTGTTTCTGCCCCACG
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTGGTAA-T-----------------------------------
------------------------CTCCCCCACCCTTAAG--------------AAGGTT
------------------------------------------------------------
--------------------------------------CTTTATAA-----TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG
CCCCCAAAACATTGCTCTTAACTCCAA---------------------------------
-----------------------TGCCTATCCCAAAACCTATAAGAACTAATGATAAT--
-------TC-C---ACCACCCTTTGCTGACTCCTTTTTTAGACTCAGCCTGTCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCAGACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACACACGTGA---------
>LTR7B_chr22_Sltr_959__chr22_1893812018938550__
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CTTGTGAC---------------------------------------------CTGCACG
GATACATCCAGA------------------------------------------------
-----------------------------TGGGCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAGAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTCATAA-T-----------------------------------
------------------------CTCCCCCACCCTTAAG--------------AAGGTT
------------------------------------------------------------
--------------------------------------CTTGGTAAT----TCTCCC---
-------------CA-CCCTT---------GAGAAGGTACTTTGTGAGATCCA-CCCCTG
CCCCCAGAACATTGCTCTTAACTCCAC---------------------------------
-----------------------TGCCTATCCCAAAACCTGTAAGAACTAATGATAAT--
-------CC-C---ACCACCCTTTGCTGACTCCTTTTTTGGACTCAGCCTGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCATACAAAG-CTG--GTT--GGTGGTCC
CTTCACAGGGACACATGAGA--C------
>LTR7B_chr22_KI270734v1_random_Sltr_970__chr22_KI270734v1_random_163419163849__
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CTTGTGAC---------------------------------------------CTGCACG
GATACATCCAGA------------------------------------------------
-----------------------------TGGGCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAGAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTCATAA-T-----------------------------------
------------------------CTCCCCCACCCTTAAG--------------AAGGTT
------------------------------------------------------------
--------------------------------------CTTGGTAAT----TCTCCC---
-------------CA-CCCTT---------GAGAAGGTACTTTGTGAGATCCA-CCCCTG
CCCCCAGAACATTGCTCTTAACTCCAC---------------------------------
-----------------------TGCCTATCCCAAAACCTGTAAGAACTAATGATAAT--
-------CC-C---ACCACCCTTTGCTGACTCCTTTTTTGGACTCAGCCTGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCATACAAAG-CTG--GTT--GGTGGTCC
CTTCACAGGGACACATGAGA--C------
>LTR7B_chr3_2ltr_int_fr_1072__chr3_2755337227553803__
TGTCAGGCTTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACC
TACACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTTTGATTTGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAA-T-----------------------------------
------------------------CTCCCCCACCCTTAAG--------------AAGGTT
------------------------------------------------------------
--------------------------------------CTTTGTAAT----TCTCCC---
-------------CA-TCCTT---------GAGAATGTACTTTGTGAGTTCTACCCCCTG
CCTGCAAAACATTGCTCCTAACTCCAC---------------------------------
-----------------------CACCTATCCCAAACCCTATAAGAACTAACGATAAT--
--------C-C---ACCACTCTTTGCTGACTCCTTTTTCAGACACAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGCTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACAAGGACATGTGAGA--C------
>LTR7B_chr3_2ltr_int_fr_1073__chr3_2759900227599433_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAT---------------------------------------------CTGCACC
TACACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAAGTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGGC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCTCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGAAA-T-----------------------------------
------------------------CTCCCGCACCCTTAAG--------------AAGGTT
------------------------------------------------------------
--------------------------------------CTTTGTAAT----TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCTCTG
CCCGCAAAACATTGCTCTTAACTCCAC---------------------------------
-----------------------CGCCTATCCCAAAACCTATAAGAGCTAATGATAAT--
--------C-C---ACCACCCTTTGCTGACTCCTTTTTCGGACTCAGCCCGCCTGCACCC
GGGTGA-----AA--TAAACAGCCTTGCTGTTCACACAAATCCTG--TTT--GGTGGTCT
CTTCACACGGACGCTTGAGA--CA-----
>LTR7B_chrX_2ltr_int_fr_1837__chrX_8272676682727197_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCATG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAACAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCTACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAA-T-----------------------------------
------------------------CTCCCCCACCCTTAAG--------------AAGGTT
------------------------------------------------------------
--------------------------------------CTTTGTAAT----TCTCCC---
-------------CA-CTCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG
CCTGCAAAACATTGTTCCTAACTCCAC---------------------------------
-----------------------CACCTATCCCAAAACCTATAAGAACTAATGATAAT--
--------C-C---ACCACCCTTTGCTGACTCCTTTTTCAGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCTTATTGCTCACACAAAACCTG--TTT--GGTGGTCT
CTTCACACAGACGCGTGAGA--CA-----
>LTR7B_chr6_Sltr_1431__chr6_158343885158344350_+_
-GTCAGGCCCCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATCGTGATTTGTTTCTTCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAA-T-----------------------------------
------------------------CTCCCCCACCCTTAAG--------------AAGTTT
------------------------------------------------------------
--------------------------------------CTTTGTAAT----CTCCTC---
-------------CA-CCCTT---------AAGAATGTTCTTTGTGAGATCCACCCCCTG
CCCGCAAAACATTGCTCCTAACTCCAC---------------------------------
-----------------------CACCTATCCCAAAACCTATAAGAACTAATGATAAT--
--------C-C---ACCACCCTTTGCTGACTCTTTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TGT--GGTGGTCT
CTTCACACAGACGTGTGAGA--CA-----
>LTR7B_chr4_Sltr_1229__chr4_3502182435022255__
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCATA
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAACAACTAAAC------------
------------------------------------------------------------
----------ATCCACAAAATAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAA-T-----------------------------------
------------------------TTCCC---CCCTTAAG--------------AAGGTT
------------------------------------------------------------
--------------------------------------CTTTGTAAT----TCTCCC---
-------------CA-CCCTT---------GAGAATGTATATTGTGAGATCCACCACCTG
CCAGCAAAACATTGCTCCTAACTCCAC---------------------------------
-----------------------CGCCTGTCCCAAAACCTGTAAGAACTAATGATAAT--
-------CC-C---ACCACCCTTCGCTGACTCCTTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGCTGTTCACACAAATCCTG--T-T--GGTGGTTT
CTTCACAAGGACGCGTGAGA--C------
>LTR7B_chr9_Sltr_1695__chr9_3337753233377963__
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCATG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAATTGAAG------------
------------------------------------------------------------
----------ATCCACAGAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCA---TCGTGATTTGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAA-T-----------------------------------
------------------------CTCCCCCACCCTTAAG--------------AAGTTT
------------------------------------------------------------
--------------------------------------CTTTGTAAT----TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATTCACCCCTTG
CCCGCAAAACACTGCTCCTAACTCCAC---------------------------------
-----------------------CGCCTATCCCAAAACCTATAAGAACTAATGATAAT--
-------CC-C---AGCACCCTTTGCTGACTCCTTTTTCGGACTGAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCATG--T-T--GGTGGTCT
CTTCACACGGATGCGCGTGA--C------
>LTR7B_chr3_2ltr_int_fr_1005__chr3_136223285136223714__
TGTCAGGCCTCTGAGCCCAAG-----------------------TTAAGCCATCATATCC
CCTGTGAT---------------------------------------------CTGCACG
TATAAATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATTAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTTTTTCTGCTCCACC
CTAACTGAT-------CGAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAA-T-----------------------------------
------------------------CTCCCCCACCCTTAAG--------------AAGGTT
------------------------------------------------------------
------------------------------------------GTAAC----TCTCCC---
-------------CA-CCCTT---------AAGAATGTACTTTGTGAGATCCACCCCCTG
CCTGCAAAACATTGCTCCTAACTCCAC---------------------------------
-----------------------TGCCTATCCCAAAACCTGTAAGAACTAATGATAAT--
-------CC-C---ACTACCCTTTGCTGATTCCTTTTTCGGACTCACTCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TT---GGTGGTCC
CTTCACACGGACACATGTGA--C------
>LTR7B_chr8_Sltr_1604__chr8_121815816121816289__
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCATA
TATACATCCAGC------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAA-AGAAGTGAAAATGGC--------------------------
---------------------------------C----------TTAA----CTGAGGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTCTTTCTGCCCCACT
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAA-T-----------------------------------
------------------------CTCCCCCACCCTTAAG--------------AAGTTT
CTT-------------------------------TGTAA--TCTCACCCACCCTTAAGAA
GGT------------------------------TTTTG----GTAAT----TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG
CCTGCAAAACATTGCTCCTAATTCCAC---------------------------------
-----------------------CGACTATCCCAAAACCTGTAAGATCTAATGATAAT--
-------CC-C---ACCACCCTTTGCTGACTCCTTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGATGCTCACACAAAGCCTG--TTT--GGTGGTCC
CTTCACACGGATGCACGTGA--C------
>LTR7B_chr1_2ltr_int_fr_67__chr1_228682353228682714__
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------------------------------------------TGAT
CTG---------------------------------------------------------
-------------------------------CCAACATTATGATTTGTTTCTGCCCCACC
CTAACTGAT-------CAAC----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTG----------------------------------------
------------------------------------------------------------
------------------------------------TAA--TCTCCACCACCCTT-----
-------------------------AAGAAGTTTCTTT----GCAAT----CTCCCC---
-------------CA-CCCTT---------GAGAAGATACTTTGTGAGATCCACCCCCTG
CCTGGAAAACATTGCTCCTAACTCCAC---------------------------------
-----------------------CGCCTATCCCAAAACCTGCAAGAACTAATGATAAT--
--------CCC---ACCACCCTTTGCTGACTCTCTTTTTGGACTCAGCCCACCTACACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGAAGCATGAGA--C------
>LTR7B_chr1_Sltr_fr_72__chr1_229418824229419191_+_
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------GGCCGGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTG----------------------------------------
------------------------------------------------------------
------------------------------------TAA--TCTCCCCCACCCGT-----
-------------------------AAGAAAGTTCTTT----GTAAT----TCTCCT---
-------------CA-CCCTT---------GAGAATGTACTTAGTGAGATCCACCCCCTG
CCCACAAAACATTGCTCCTAACTCCAC---------------------------------
-----------------------CGCCTATCCCCAAACCTATAAGAACTAATGATAAT--
--------CC----ACCACCCTTTGCTGACTCTCTTTTTGGACTCAGTCCCCCTGCACCT
AAGTGA-----AA--TAAACAGCTTTGTTGCCCACACAAAGCCTG--TTT--GGTGATCT
CTTCACACGGACACGTGAGA--CA-----
>LTR7B_chr5_Sltr_fr_1376__chr5_9386959793869997_+_
------------------------------------------------------------
------------------------------------------------------------
-----------A------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----ATGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTG----------------------------------------
------------------------------------------------------------
------------------------------------TAA--TCTCCCCCACCCTTAAGAG
GGTTCTCTGTAATCTCCCCCACCATAAGAAGGTTCTTT----GTAAT----TCTCCC---
-------------CA-CCTTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG
CCCGCAAAACATTGCTCCTAACTCCAC---------------------------------
-----------------------TGCCTATCCCAAAACCTGTAAGAACTAATGATAAT--
--------CCC---ACCACCCTTTGCTGATTCTCTTTTCGGGCTCAGCCCGCCTGCGCCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGCGTGAGA--CA-----
>LTR7B_chr12_Sltr_368__chr12_6933248869332914_+_
-ATCAGGCCTCTCAGCCCAAG---------------------------------------
-------C---------------------------------------------TA-----
-----AGCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCACAGTGATTTGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTG----------------------------------------
------------------------------------------------------------
------------------------------------TAA--TCTCACCAACCCTTAAGAA
GGTTCTTTGTAATCTCCCCACCCTTAAGAAGGTTCTTT----GTAGT----TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG
CCCACAAAACATTGCTCCTAACTCCAC---------------------------------
-----------------------CGCCTATCCCAAAACCTTTAAGAACTAATGATAAT--
--------CC----ACCACCCTTTGCTGACTCTCTT--CAGACTTAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTACTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACAGGGACGCGTGTAA--CA-----
>LTR7B_chr15_Sltr_508__chr15_4973379049734255__
TGTCAGGTCTCTGAGCCCAAG---------------------------------------
-------C---------------------------------------------CTGCAGG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------T----------TTAG----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCACTGTGATTTGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTG----------------------------------------
------------------------------------------------------------
------------------------------------TAA--TCTCCCTCACCCTTAAGAA
GGTTCTTTGTAATCTCCCCACCCTTAAGAAAGTTCTTT----GTAAT----CTCCCC---
-------------CA-CCCTT---------AAGAATGTACTTTGTGAGATCCACCCCCCG
CCCACAAAACATTGCTCCTAACTCCAC---------------------------------
-----------------------CACCTATCCCAAAACCTATAACAACTAATGATAAT--
--------CCC---ACCACTCTTTGCTA--TCTTTT--TGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAAGAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACAGGGATGCGCGTGA--C------
>LTR7B_chr1_Sltr_90__chr1_248210437248210931_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------TTAAGCCATCATATCC
CTTGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTAACTGAT-------CAGT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTG----------------------------------------
------------------------------------------------------------
------------------------------------TAA--TGTCCCCCACCCTTAAGAA
GGTTCTTTGTAATCTCCCCACCCTTAAGAAGGTTCTTT----GTAAT----TCTCCC---
-------------CA-CCCTT---------GAGAGTGTACTTTGTGAGATCCACCACCTG
CCCCCAAAACATTGCTCCTAACTCCAC---------------------------------
-----------------------TGCCTATCCCAAAACCTGTAAGAACTAATGATAAT--
--------CCC---ACCACACTTTGCTGATTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACACTTGAGA--CA-----
>LTR7B_chr15_Sltr_503__chr15_4128267841283105__
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACA-AAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
--------------------------------CACCATTGTGATTTGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTG----------------------------------------
------------------------------------------------------------
------------------------------------TAA--T------------------
-------------CTCCCCACCCTTAAGAAGGTTCTTT----GTAAT----TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG
CCCACAAAACATTGCTCCTAACTCCAC---------------------------------
-----------------------CGCCTATCCCAAAACCTGTAAGAACTAATGATAAT--
--------CC----ACCACCCTTTGCTGACTCTCTTTTCCGACTCATCCCACCTGCACCC
AGGTGA-----AA--TAAACAGGCTTGTTGTTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACACGTGAC----------
>LTR7B_chr6_Sltr_1434__chr6_158888752158889215__
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGCCAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAGGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCAAAATTGTGATTTGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTG----------------------------------------
------------------------------------------------------------
------------------------------------TAA--TCTCCCCCACCCTTAAGAA
GGTTCTTTATAATCTCCCCACCCTTAAGAAGGTTCTTT----GTAAT----TCTCCC---
-------------CA-CCCTT---------GAGAATGTTCTTTGTGAGATCCACCCCCTG
CCCACAAAACATTGCTCCTAACTCCAC---------------------------------
-----------------------CGCCCATCCCAAAACCTCTAAGAACCAATGATAAT--
--------CCC---ACCGCCCTTTGCAGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGAATGCGTGAGA--C------
>LTR7B_chr2_Sltr_fr_756__chr2_106618322106618750__
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCAGATCC
CCTGTGAC---------------------------------------------CTGCAC-
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTG----------------------------------------
------------------------------------------------------------
------------------------------------TAA--TCTCCCCC-----------
-------------------ACCCTTAAGAAGGTTCTTT----GTAAT----TCTCCC---
-------------CA-CCCTG---------GAGAATGTACTGTGTGAGATCCACCCCCTG
CCCACAAAACATTGCTCCTAACTCCAC---------------------------------
-----------------------CGCCTATCCCAAAACCTCTAAGAACTAATGATAAT--
--------CCC---ACCACACTTTGCTGACTCTCTT--CGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAACCTG--TTT--GGTGCTCT
CTCCACACCGACGTGTGAG----------
>LTR7Y_chr11_Sltr_fr_203__chr11_122692867122693353__
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCT
CCTGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTG----------------------------------------
------------------------------------------------------------
------------------------------------TAA--TCGCCCCCACCCTTAAGAA
GGTTCTTTGTAGTCTCCCCACCCTTGAGAAGGTTCTTT----GTCAT----TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG
CCCACAAAACATTGCTGCTAACTCCAC---------------------------------
-----------------------TGCCCATCCCAAAACCTCTAAGAACTAATGATAAT--
--------CCC---ACCACCCTTTGCTGACTCTCTTTTCGGACTCTCCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACACCACCTG--TTT--GGTGGTCT
CTTCACTCG---------GA--CA-----
>LTR7B_chr5_2ltr_int_fr_1369__chr5_7688658876887017__
--TCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTAATTTGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTG----------------------------------------
------------------------------------------------------------
------------------------------------TAA--TCGCCCCAACCCTT-----
-------------------------AAGAAGGTTCTTT----GCAAT----TCTCCC---
-------------TA-TCCTT---------GAGAATGTACTTCGTGAGATCCACCCCCTG
CCTGCAAAAAATTGCTCCTAACTCCAC---------------------------------
-----------------------CGCCTATCCCAAAACCTATAAGAACTAATGATAAT--
---------CC---ACCACCCTTTGCTGACTCTCTTTTTGGACTCAGCCCACCTGCACCC
AGGTAA-----TA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACATATGAGA--C------
>LTR7B_chr4_Sltr_1239__chr4_6251438962514850_+_
-GTCAGGCCTCTGAGCCCCAG-----------------------CTAAGCCATCATATGT
CCTGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATCGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCTCCATTGTGATTTGTTTCTGCTCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTG----------------------------------------
------------------------------------------------------------
------------------------------------TAA--TCTCCCCGACCCTTAAAAA
GATTCTTTGTAATCTCCCCACGCATAAGAAGGTTCTTT----GCA-T----TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTCCTGAGATCCACCCCCTG
CCCACAAAACATTGCTCCTAACTCCAC---------------------------------
-----------------------CGCCTATCCCAAAACCTATAAGAACTAATGGTAAT--
--------CCC---ACCACCC-TCGCTGACTCTCTTTTTGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAACCTG--TTT--GGTGGTCT
CTTTACATGAACACATGAGA--CA-----
>LTR7B_chr2_Sltr_903__chr2_8383416483834595_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCG
CCTGTGAC---------------------------------------------CTGCACG
TGTACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAATAAGTGAAAATAGA--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTG----------------------------------------
------------------------------------------------------------
------------------------------------TAA--TCTCCCCCACCCTTAAGAA
GGTTCTTTG----------------------------------TAGT----TCTCCC---
-------------CA-CCCTT---------GAGAATGTGCTTTGTGAGAGCCACCCCCTG
CCCACAAAACATTGCTCCTAACTCCAC---------------------------------
-----------------------CACCTCTCCCAAAACCTTTAAGAACTAATGATAAT--
--------CCC---ACCACCCTTTGCTGACTCTCTTTTTGGACTCAGCCCACCTGCACCC
GGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--T-T--GGTGGACT
CTTTACACGGACACATGAGA--CA-----
>LTR7B_chr4_Sltr_1251__chr4_8255879982559260_+_
-GTCAGGCTTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAA---AGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCATCATTGTGATTTGTTTCTTCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTG----------------------------------------
------------------------------------------------------------
------------------------------------TAA--TCTCCCCCACCCTTAAGAA
GGTTCTTTGTAATTTCCCCACCCCTAAAAATGTTCTTT----GTAAT----TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG
CCTGCAAAACATTGCTCCTAACTCCAC---------------------------------
-----------------------CGCCTATCCCAAAACCTACAAAAACTAATGATAAT--
--------CCC---ACCACCCTTTGCTGACTCCTTTTTCGGACTCAGCCCACATGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--T-T--GGTGGACT
CTTCACACGGACCCATGTGA--CA-----
>LTR7B_chr1_Sltr_69__chr1_228956163228956626__
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
CGTACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAATAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACT
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTG----------------------------------------
------------------------------------------------------------
------------------------------------TGA--TTTTCTCCACCCTTAAAAA
GATTGTTTGTAATCTCCCCACCCTTAAGAAGATTCTTT----GTAAT----GCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG
CCCACAAAACATTGCTCCTAACTCCAC---------------------------------
-----------------------CGCCTATCCCCAAACCTACAAGAACTAATGATAAT--
--------CCC---ACCATGCTT-GCTGAGTCTCTTTTTGGACTCAGCCCGCCTGCACAC
AGGTGA-----AA--TAAACAGCCTTGTGTCTCACACAAAGCCTA--TTT--GGTGGTCT
CTTCATATGGACACATGAGA--C------
>LTR7B_chr10_Sltr_179__chr10_4332056443321025_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCGTCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTAATTTGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTG----------------------------------------
------------------------------------------------------------
------------------------------------TAA--TCTCCCCCACCCTTAAGAA
GGTTCTTTATAATCTCCCCACCCTTAAGAAGGTTCTTT----GTAAT----TCTCCC---
-------------CA-CCCTT---------GAGAACGTACTTTTCGAGATCCACCCCCTG
CCCACAAAACATTGCTTCTAACTCCAC---------------------------------
-----------------------TGCCTATCCCCAAACTTATAAGAACTAATGATAAT--
--------CCC---ACCACCCTTTGCTGA--CTCTTTTCAGACTCAGCCCGCCTGCACAC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACACATGAGA--CA-----
>LTR7B_chr1_Sltr_146__chr1_9157373691574195__
TGTCAGGCCTCTGAGCCCACG-----------------------CTAAGCCATCATATCC
CCAGTGAC---------------------------------------------CTGCAGG
TGTACATCCAGA------------------------------------------------
-----------------------------TGGTCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ACCC---AAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCATC
CTAACTGGT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTG----------------------------------------
------------------------------------------------------------
------------------------------------TAA--CCTCCCCCACCCTTAAGAA
GATTCTTTATAATCTCCCCACGATTAAGAAGTTTCTTT----GTAAT----TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCA-CCCCTG
CCCCCAAAACATTGCTCCTAACTCCAC---------------------------------
-----------------------CGCCTATCCCAAAACCTATAAGAACTAATGATAAT--
--------CCC---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGGGGTCT
CTTCACACGGACGCGTGAGA--C------
>LTR7B_chr17_Sltr_fr_617__chr17_8039979480400230_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCAGGGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAGGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCATC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTG----------------------------------------
------------------------------------------------------------
------------------------------------TAA--TCTCTCCCACCCTTAAGAA
GGTTCTTCGTAA--------------------TTCTTT----GTAAT--------CC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG
CCTGCAAAACATTGCTCCTAACTCCAC---------------------------------
-----------------------CGCCTATCCC-AAACCTACAAGAACTAATGATAAT--
--------CCC---ACCACACTTTGCTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGATGCGTGTGA--C------
>LTR7B_chr12_Sltr_301__chr12_122453063122453492__
TGTCAGGCCTCTGAGCCCAAA-----------------------CTAAGCCATCATATCT
CCTGTG-----------------------------------------------CTGCACG
AATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCACTGTGATTTGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTA----------------------------------------
------------------------------------------------------------
------------------------------------TAA--TCTCCCCCACCCTTAAGAA
GGT------------------------------TCTTT----GTAAT----TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG
CCTGCAAAACATTGCTCCTAACTCCAC---------------------------------
-----------------------CGCCTATCCCAAAACCTAAAGGAACTAGTGGTAAT--
--------CAC---GCCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGCTGCACACACAAACCCTG--TTT--GGTGGTCT
CCTCACAC-AACGCATGAGA--C------
>LTR7B_chr5_Sltr_1341__chr5_180421303180421731__
TGTCAGGCCTCTGAGCCCAGG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CGGCACC
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGTCCCAAC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTGG----------------------------------------
------------------------------------------------------------
------------------------------------TAA--TCTCCCCCACCCTTAAGAA
GGT------------------------------TCTTT----GTAAT----TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG
CCTGCAAAACATTGCTCCTAACACCAC---------------------------------
-----------------------CGCCTATCCCAAAACCTATAAGAACCA-TGATAAT--
--------C-C---ACCACCCTTTGCTGACCCT--TTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTGACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCATGAAA--C------
>LTR7B_chr5_Sltr_1353__chr5_3526854335269048__
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TTTACATCCACA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTCTCTGCCCCACC
CTCACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTG----------------------------------------
------------------------------------------------------------
------------------------------------TAA--TCTCTGCCACCCTTAAGAA
GGTTCTTTATAATCTCCCCACCCTTAAGAAGGTTCTCT----GTAAT----TCTCCC---
-------------CA-CCCTT---------GAGAACGCACTTTGTGAGATCCACCCCCAG
CCTGCAAAACATTGCTCCTAACTCCAC---------------------------------
-----------------------CGCTTATCCCAAAACCTATAAGAACTAATGATAAT--
--------CCC---ACCACCCT-TGCTGACTGTCTTTTTGGACTCAGCCTGCCTGCACCC
AGGTGC-----AA--TAAACAGACTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACGTGGACGCATGAGA--C------
>LTR7B_chr7_Sltr_1582__chr7_9715392597154379__
TGTCAGGCCTCTTAACCCAAG-----------------------CTAAGCCAT-------
--TGTGAC---------------------------------------------CTGCACA
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAAATGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACT
CTAACTCAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTG----------------------------------------
------------------------------------------------------------
------------------------------------TAA--TCTCCCCCACCCTTAAGAA
GGTTCTTTGTAATCTCCCCACCCTTAAGAAGGTTCTTT----GTAAT----TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTATGAGATCCACCCCCTG
CCTGCAAAACATTGCTCCTAACTCCAC---------------------------------
-----------------------CGCCTATCCCAAAACCTATAAGAACTAATGATAAT--
--------CCC---ACCACCCTTTGCTGACTCTCTTTTTGGACTCAGCCTGCCTGCACTC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGATGCATGTGA--C------
>LTR7B_chr8_Sltr_1633__chr8_6737801067378442_+_
-GTCAGGCCTCTGAGCCCAAA-----------------------CTAAGCCATCATATAA
CCTGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGCAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACT
CTAACTAAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTG----------------------------------------
------------------------------------------------------------
------------------------------------TAA--TCTCCCCCACCCTTAAGAA
GGTTCTTTGTAATTCTCCCACCCTTGAGAATG----------------------------
-------------------------------------TACTTTGTGAGATCCACCCCC-A
CCCGCAAACCATTGCTCTTAACTCCAC---------------------------------
-----------------------TGCCTATCCCAAAACCTGTAAGAACTAATGATAAT--
--------CCC---ACCACCCTTTGCTGACTCTCTTTTTGGACTCAGCCTGCCTGCATCC
AGGTGA-----AG--TAAACAGCCTCGTTGCTCACACAAAGCCTG---TT--GGTGGTCT
CTTCACACGGACGCATGTGA--CA-----
>LTR7B_chr1_Sltr_28__chr1_169057140169057547__
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGGCATCATATCC
CCTGTGAC---------------------------------------------GTGCACG
TATGCATCCAGA------------------------------------------------
-----------------------------TGGACTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGGAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTG-CCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTG----------------------------------------
------------------------------------------------------------
------------------------------------TAA--TCTCCCCCATCCTTAAGAA
GATTCTTTGTAATTCTCCC-----------------------------------------
--------------A-CTCTT---------GAGAATGTACTTTGAGAGGACCAC--CCTG
TCTGCAAAACATTGCTCCTAACTCCAC---------------------------------
-----------------------CGCCCATCCCAAAACCTATAAGAACTAATGATAAT--
--------CCC---ACAACCCTTTGCTGACTCTCTTTTCAGACTCAGCCCCCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTG----------------------------CT
CTTCACATGGATGCGTGTGA--C------
>LTR7B_chr2_Sltr_892__chr2_7490193074902390__
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAACCATCATATTC
CCTGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAC------------
------------------------------------------------------------
----------ATCCACAAA---AGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTTTGATTTGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTG----------------------------------------
------------------------------------------------------------
------------------------------------TAA--TCTCCCCCACCCTTAAGAA
GGTTCTTTGTAATCTCCCCACCCTTAAGAAGGTTCTTT----GTAAT----TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACTTCCTG
CCTGCAAAACATTGCTCCTAACTCCAC---------------------------------
-----------------------CGCCTATCCCAAAACCTATAAGAACTAATGATAAG--
--------CCC---ACCACCCTTTGCTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GATGGCCT
CTTCACACGGACGCGTGAGA--C------
>LTR7B_chr4_Sltr_1252__chr4_8363668883637152_+_
-ATCAGGCCTCTGAGCCCAGG-----------------------CTAAGCCATCATATCC
CCTATGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTG----------------------------------------
------------------------------------------------------------
------------------------------------TAA--TCTCCCCCACCCTTAAGAA
GGTTCTTTGTAATTTCCCCACCCCTAAAAATGTTCTTT----GTAAT----TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG
CCTGCAAAACATTGCTCCTAACTCCAC---------------------------------
-----------------------CGCCTATCCCAAAACCTGTAAGAACTAATGATAAT--
--------CCC---ACCACTCTTTGCTGAGTCTCTTTTCGGACTCAGCCCGCCTGCATCC
AGGTGG-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGCGGACT
CTTCACACGGACGCGGGAGA--CA-----
>LTR7B_chr8_Sltr_1619__chr8_1836202318362489_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
TCCATGAC---------------------------------------------CTGCATG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGACGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCAACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTG----------------------------------------
------------------------------------------------------------
------------------------------------TAA--TCTTCCCCACCCTTAAGAA
GGTTCTTTGTAATCTCCCCACCCTTAAGAAGGTTCTTT----GTAAT----TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG
CCTGCAAAACGTTGCTCCTAACTCTAC---------------------------------
-----------------------TGCCTATCCCAAAACCTGTAAGAATGAATGATAAT--
--------CCC---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGG-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGGCT
CTTCACATGGACGCGGGAGA--CA-----
>LTR7B_chr17_Sltr_608__chr17_71422117142701__
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGGCATCACATCC
CCTGTGAC---------------------------------------------CTGCACG
TATACATCCAGG------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAAAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTGACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTGCTTTG----------------------------------------
------------------------------------------------------------
------------------------------------CAA--TCTCTCCCAACCTTAAGAA
GGTTCTTTGTAATCTCCCCACCCTTAAGAAGGTTCTTT----GTAAT----TCTCCC---
-------------CA-CCCAT---------G----TATACTTTGTGAGATCCACTCCCTG
CCTGCAAAACATTGCTCCTAACTCCAC---------------------------------
-----------------------CGCCTATCCCAACACCTGTAAGAGCTAGTGATAAT--
--------CCC---ACCACTCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACGC
AGGTGA-----AA--TAAATAGCCTTGTTGCTCACACAAAGCCTG--TTC--GGTGGGCT
CTTCACTCGGACGCACGTGA--C------
>LTR7B_chr14_Sltr_468__chr14_5313589853136326_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCT
CCTGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TTACCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAA---AAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTAATTTGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTGCTTTG----------------------------------------
------------------------------------------------------------
------------------------------------TAA--TTTCCCCCACCCTTAAGAA
GGTTCTTTGTAATC---------------------------------------TCCC---
-------------CA-CCCTT---------GAGAATGTACTTTATGAGATCCACCCCCTG
CCCGCAAAACATTGCTCCTACCTCCAC---------------------------------
-----------------------CACCTATCCCAAAACCTGTAAGAACTAATGATAAT--
--------C-C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAACCTG--TTT--GGTGGTCT
CTTCACACGGACGCATGAGA--CA-----
>LTR7B_chr16_Sltr_553__chr16_3045455930455010__
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATA---
-CCGTGAC---------------------------------------------CTGCACA
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTAACTGTT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTG----------------------------------------
------------------------------------------------------------
------------------------------------TAA--TCTCCCCCACCCTTAAGAA
GGTACTTTGTAATCTCCCAACCCTTAAGAAGGTTCTTT----GTAAT----TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCC-TG
CCCGCAAAACATGGCTCTT-----CAC---------------------------------
-----------------------CCCC-ATCCCAAAACCTGTAAGAACTAATGATAAT--
--------C-C---ACCACCCTTTGTTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTTT
CTTCACATGGACGCGTGAGA--C------
>LTR7B_chr16_Sltr_555__chr16_3125223531252691__
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCATG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCTTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGTCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTG----------------------------------------
------------------------------------------------------------
------------------------------------TAA--TCTCCCCCACCCTTAAGAA
GGTACTTTGTAATCTCCCGACCCTTAAGAAGGTTCTTT----GTAAT----TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCC-TG
CCCGCAAAACATGGCTTTT-----CAC---------------------------------
-----------------------CCCCTATCCCAAAACCTGTAGGAACTAATGATAAT--
--------C-C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACGAAGCCCG--TTT--GGTGGTCT
CTTCACATGGACACGTGAGA--C------
>LTR7B_chr11_2ltr_int_fr_228__chr11_1864325418643683_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TCGCCTGAAGCAACTGACG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTG----------------------------------------
------------------------------------------------------------
------------------------------------TAA--TCT-CCCCACCCTTAAGAA
GGT------------------------------TCTTT----GTAAT----TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCATCCGCTG
CCCACAAAACAGTGTTCCTAACTCGAC---------------------------------
-----------------------TGCCTATCCCAAAACCTATGAGAACTAATGATAAT--
--------C-C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACCTGAACCC
AGGTGA-----AA--TAA-CAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACACATGAAA--CA-----
>LTR7B_chr16_Sltr_571__chr16_6689661666897052_+_
-GTCCGGCCTCTAAGCCCAAG-----------------------CTAAGCCATCATATCC
CTTGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TCACCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAGAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTG----------------------------------------
------------------------------------------------------------
------------------------------------TAA--TCTGCCCCACCCTTAAGAA
TGT------------------------------TCTTT----GTAAT----TCTCCC---
-------------CA-CCCTT---------GAGAAGGTACTTTGTGAGATCCACTCCCTG
CCTGCCAAACGTTGCTCCTAACTCCAC---------------------------------
-----------------------CGCCTATCCCAAAACCTGTAAGAACTAATGATAAT--
--------C-C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACTTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACACGTGAGA--CA-----
>LTR7B_chr9_Sltr_fr_1662__chr9_105285473105285881__
--------------------------------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TCACCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGACAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCACTGTAATTTGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTCTG----------------------------------------
------------------------------------------------------------
------------------------------------TAA--TCTTCCCCACCCTTAAAAA
GGT------------------------------TCTTT----GTAAT----TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCACTG
CCCGCAAAACGTTGCTCCTAATTCCAC---------------------------------
-----------------------CACCTATCCCAAAACCTATAAGAACTAATGATAAT--
--------C-T---ACCACCCTTTGCTGACTCT--TTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGCGTGAGA--C------
>LTR7B_chr17_Sltr_610__chr17_7472449974724930__
TGTCAGGCCTTTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------AGCCACAAAAGATGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATCAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTAACTGGT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTG----------------------------------------
------------------------------------------------------------
------------------------------------TCA--TCTCCCCTACCCTTAAGAA
GGT------------------------------TCTTT----TCTAT----TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCA-TCCCTG
CCCGCAAAACATTGCTCCTAACTCCAC---------------------------------
-----------------------TGCCTATCCCCAAACCTGTAAGAACCAATGATAAT--
--------C-C---ACTGCTCTTTGCTGACTCTCTTTTCGGATTCAGCCTGCCTGCACCC
AGGTGA-----AA--TAAACAGCCACGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACACATGAGA--C------
>LTR7B_chr6_Sltr_1441__chr6_167029689167030151__
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCAGTGTC---------------------------------------------CTGCACG
TGTACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAATTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCTACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTG----------------------------------------
------------------------------------------------------------
------------------------------------TAA--TCTCCCCCACCCTTAAGAA
GGT------------------------------TCTTT----ATAAT----CTCCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTAAGATCCAACCCCTT
CCCTCAAAACATTGCTCTTAACTCCAC---------------------------------
-----------------------CACCTATCCCAAAACCTGTAAGAACTAATGATAAT--
--------C-C---ACAACCCTTTGCTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGACTG--TTT--GGTGGTCT
CTTCAGACAGACACATGAGA--C------
>LTR7B_chr7_Sltr_1567__chr7_7086008170860512_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TCTACATCCAGA------------------------------------------------
-----------------------------TCTCCTAAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTTCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATACTTTG----------------------------------------
------------------------------------------------------------
------------------------------------TAA--TCTCCCCCACCCTTAAGAA
GGT------------------------------TCTTT----GTAAT----TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCATCCCCTG
CCCGCAAAACATTGCTCCTAACTCCAC---------------------------------
-----------------------TGCCTGTCCCAAAACCTATAAGAAGTAATGATAAC--
--------C-C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCAGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGATCT
CTTCACACGGACTCGTGAGA--CA-----
>LTR7B_chr7_Sltr_1568__chr7_7117444871174876__
TGTCAGGCCTCTGAGCCCACG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTACACG
TCTACATCCAGA------------------------------------------------
-----------------------------TCGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAA---AGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GCACTTTG----------------------------------------
------------------------------------------------------------
------------------------------------TAA--TCTCCCCCACCCTTAAGAA
GGT------------------------------TCTTT----GTAAT----TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCATCCCCTG
CCCGCAAAACATTGCTCCTAACTCCAC---------------------------------
-----------------------CGCCCATCCCGAAACCTATAAGAATTAATGATAAC--
--------C-C---ACCACGCTTTGCTGACTCTCTTTTGGGACTCAGCCGGCCTGCACCC
AGATGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--AGTGGTCT
CTTCACACGGACACGTGAGA--C------
>LTR7B_chr11_2ltr_int_fr_244__chr11_3973412639734557_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCTTATCC
CTTGTGAC---------------------------------------------CTGCATG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCGTTGTAATTTGTTTCTGCCCAATC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTG----------------------------------------
------------------------------------------------------------
------------------------------------TAA--TCTCCCCCACCCTTAAAAA
GGT------------------------------TCTTT----GTAAT----TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG
CCCACAAAACATTGCTCCTAACTCCAC---------------------------------
-----------------------CGCCTATCCCAAAACCTATAAGAACTAATGATAAT--
--------C-C---ACCACCCTTTGCTGACTTTCTTTTTGGACTCAGCCTGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGTTCACATAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACATGTGAGA--CA-----
>LTR7B_chr12_Sltr_351__chr12_4078540640785808__
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCA--------
------------------------------------------------------------
------TCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTAATTTGTTTCTGCCCCATC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTG----------------------------------------
------------------------------------------------------------
------------------------------------TAA--TCTCCCCCACCCTTAAGAA
GGT------------------------------TCTTT----GTAAT----TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCACTG
CCCACAAAACATTGCTCCTAATTCCAC---------------------------------
-----------------------CACCTATCCCAAAACCTACAAGAACTAATGATAAT--
--------C-C---ACCACCCTTTGCTGACTTTCTTTTTGGACTCAGCCCGCCCGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACAGGTGAGA--C------
>LTR7B_chr16_Sltr_546__chr16_2557131425571745__
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGTGATCATATCC
CCTGTGAC---------------------------------------------CTGCACA
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGCAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAT
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCACCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTG----------------------------------------
------------------------------------------------------------
------------------------------------TAA--TCTCCCCCACCCTTAAGAA
GGT------------------------------TCTTT----GTAGT----TCTCCC---
-------------CA-CCATT---------GAGAATGTACTTTGTGAGATCCACCCGCTG
CCCGCAAAACATTGCTCCTAACTCCAC---------------------------------
-----------------------CGCCTATCCCAAAATCTATAGGAACTAATGATAAT--
--------C-C---ACCACCCTTTGCTGACTCTCTTTTTGGACTCAGCTCACCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CCTCACATGGACATGTGAGA--C------
>LTR7B_chrY_Sltr_1889__chrY_2114730821147737_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATTATATTC
CCTGTGAC---------------------------------------------ATGAACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCTGAAAACAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCATGATTGTGAA--GTTTCTACCCCACC
CTAACCGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTG----------------------------------------
------------------------------------------------------------
------------------------------------TAA--TCTCCCCCACCATTAAGAA
GGT------------------------------TCTTT----GTAAT----TCTCCC---
-------------GA-CCCCT---------GAGAATATACTTTGTGAGATCCACCCACTG
CCCACAAAACATTTCTCCTAACTCCAC---------------------------------
-----------------------CGTCTATCCCAAAAGCTATAAGAACTAATGATAAT--
--------C-C---ACCACCCTTTGCTGACTCTCTTTTTGGACTCAGCTCACCTGCACCC
TGGTGA-----AA--TAAACAGCC-TGTTGCTCACACAAAGCTTG--TTT--GGTGACCT
CTTCACATGGATGTATGAGA--CA-----
>LTR7B_chr11_Sltr_214__chr11_1155168611552117__
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
TCTATGAC---------------------------------------------CT-CACG
TATATATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCGCCATTGTGATTTGTTTCTGCCCAACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTG----------------------------------------
------------------------------------------------------------
------------------------------------TAA--TCTCCCCCACCCTTAAGAA
GGT------------------------------TCTTT----GTAAT----TCTCCC---
-------------CA-CCCTG---------GAGAATGTACTTTGTGAGATCCACCCCCTG
CTCGCAGAACATTGCTCCTAACTCCAC---------------------------------
-----------------------CGCCTATCCCAAAACCTATAAGAACTAATGATAAT--
--------C-C---ACCACCCTTTGCTGACTCTCTTTTTGGACTCAGCCCGCCTGCATCC
TGGTGA-----AA--TAAACAGCCATGTTGCCCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGAAGCGTGAGA--C------
>LTR7B_chr15_Sltr_fr_497__chr15_3119887431199303_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CTTGTGAC---------------------------------------------CTGCACA
TACATATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------AGCCACAAAAGAAGTGA-AATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCGC-ACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTG----------------------------------------
------------------------------------------------------------
------------------------------------TAA--TTTCCCCCACCCTTAAGAA
GTT------------------------------TCTTT----GTAAT----TCTCCC---
-------------CA-CCCTT---------GAGAATTTACTTTGTGAGATCCACCCCTTG
CTCACAAAACATTGCTCCTAACTCCAC---------------------------------
-----------------------CGCCTATCCCAAAACCTATAAGAACTAGTGACAAT--
--------C-C---ATCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCTCCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACGCAAAGCCTG--TTT--GCTGGTCT
CTTCACATGGACACATGAGA--C------
>LTR7B_chr6_Sltr_1419__chr6_145358411145358842__
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CTTATGAC---------------------------------------------CTGCACG
TATATATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGTTGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTG----------------------------------------
------------------------------------------------------------
------------------------------------TAA--TCTCCCCCACCCTTAAGAA
GAT------------------------------TCTTT----GTAAT----TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG
CTCGCAAAACATTGCTCCTAACTCCAC---------------------------------
-----------------------CGCCTATCCCAAAACCTATAAGAACTAATGATAAT--
--------C-C---ACCACCCTTTGCTGACTCTCTTTTCAGACTCAGCCCCCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACGCAAAGCCTG--TTT--GGTGGTCT
CTTCACAGGGACGTGTGAGA--C------
>LTR7B_chr1_Sltr_40__chr1_195719871195720303_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAGGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
CATACATCCACA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC
CTAACTGAT-------CAAC----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTATA----------------------------------------
------------------------------------------------------------
------------------------------------TAA--TCTCCCCCACCCTTAAGAA
GAT------------------------------TCTTT----GTAAT----TCTCCC---
-------------CA-CCCTT---------GAGGATGTACTTTGTGAGATATACCCCCTG
CCCGCAAAACATTGCTCCTAACTCCAC---------------------------------
-----------------------CGCCTATCCCAAAACCTATAAGAACTAATGATAAT--
--------C-C---ATCACTTTTTACTGACTCGCATTTTGGACTCAGCCTGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACAGGGACGTGTGAGA--CA-----
>LTR7B_chrX_Sltr_1778__chrX_153682523153682989_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACA
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTAACTGAT---------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTG----------------------------------------
------------------------------------------------------------
------------------------------------TAA--TCTCCCCCACCCTTAAGAA
AGT------------------------------TCTTT----GTAAT----TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCTCCTG
CCCACAAAACATTGCTCCTAACTCCAG---------------------------------
-----------------------CGCCTATCCCAAAACCTATAAGAACTAATGATAAT--
--------C-C---ATCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC
AGGTAA-----AA--TAAACAGCCTTGTTGCTCACACAGAGCCTG--TTT--GGTAGTCT
CTTCACATGGACGTGTGAGA--CA-----
>LTR7B_chr10_Sltr_181__chr10_4559082745591263_+_
-GTCAGGCC--TGAGCCCAAG-----------------------CTAAGCCAACATATCC
CCTGTGAC---------------------------------------------CTGCACT
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGT--------------------------
---------------------------------C----------TTAA----CTGATGAC
GTT---------------------------------------------------------
-------------------------------CCACCATTGTGATTGGTTTCTGCCCCACC
CTAACTGAT-------AAAC----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTG----------------------------------------
------------------------------------------------------------
------------------------------------TAA--TCTCCCCCACCCTTAAGAA
GGT------------------------------TCTTT----GTAAT----TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGTTCCACCCCTTG
CCCGCAAAACATTGCTCCTAACTCCAC---------------------------------
-----------------------CACCT------AAACCTATAAGAACTAATGATAAT--
--------C-C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGTCTGCCTGCACCC
AGGTGA-----AA--CAGACAGCCTTGCTGCTCCCACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGCCTGAGA--CA-----
>LTR7B_chr12_Sltr_302__chr12_124075022124075453_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGGGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCGTTGTGATTTGTTTCTGCCCCACC
CTAACTGAT-------CAGC----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTG----------------------------------------
------------------------------------------------------------
------------------------------------TAA--TCTCCCCCACCCTTAAGAA
GGT------------------------------TCTTT----ATAAT----TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG
CCTGCAAAACATTGCTCCTAACTCCAC---------------------------------
-----------------------CACCTATCCCCAAACCTCTAAGAACTAGTGATAAT--
--------C-C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGTCTGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGCGTGAGA--CA-----
>LTR7B_chr11_Sltr_231__chr11_23387692339200__
TGTCAGGCCTCTGGGCCCAAG-----------------------CTAAACCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCCGAAGCAACCAAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATCTGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTCTG----------------------------------------
------------------------------------------------------------
------------------------------------TAA--TCTCCCCAACCCTTAAGAA
GGT------------------------------TCGTT----GTAAT----TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTCTGCGAGATCCACCCCCTG
CTGGCAAAACATTGCTCCTAACCCAAC---------------------------------
-----------------------CGCCTACCCCAAAACCTGTAGGAACTAATGATAAT--
--------C-C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TACACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
TTTCACACGGACATGTGAGA--C------
>LTR7B_chr12_Sltr_374__chr12_7281700472817431__
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTG-----TGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTTCTTTA----------------------------------------
------------------------------------------------------------
------------------------------------TAA--TCTCCCCAACCCTTAAGAA
AGT------------------------------TCTTT----GTAAT----TCTCCC---
-------------CA-CCCTT---------AAGAATATACTTCATGAGATCTAACCCCTG
CTGGCAAAACATTGCTCCTAACTCCAC---------------------------------
-----------------------TGCCTACCCCAAAACTTATAAGAACTAATGATAAT--
--------C-C---ACCACCCTTTGCTGACTCTCTTTTTGGACTCAGCCTGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTTCTCACACAGAGCCAG--TTT--GGTGGTCT
CTTTACATGGATGTGTGAGA--C------
>LTR7B_chr6_Sltr_fr_1389__chr6_117657216117657960_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAAGTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGCTATTTGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTG----------------------------------------
------------------------------------------------------------
------------------------------------TAA--TCTCCCCCACCCTTAAGAA
GGT------------------------------TCTTT----GTAAT----TCTCCC---
-------------AA-CCCTT---------GAGAATGTACTTTGCGAGATCCACCCCCTG
CCTGCAAAACATTGCTCCTAACTCCAC---------------------------------
-----------------------TGCCTATCCCAAAACCTGTAAGAACTAATGATAAT--
--------C-C---ACCACCCTTTGCTGACTCTCTTTTTGGACTCAGCCCACATGCACCC
AGGTGA-----AA--TAAATAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGATGTGTGAGA--CA-----
>LTR7B_chr5_2ltr_int_fr_1382__chr5_9901652399016954__
TGTCAGGCCTCTGAACCCAAG-----------------------CTAAGTCATCATATCC
CTTGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTG----------------------------------------
------------------------------------------------------------
------------------------------------TCA--TCTCCCCCACCCTTAAGAA
GGT------------------------------TCTTT----GTAAT----TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG
CCAGCAAAATATTGCTCCTAACTCTGC---------------------------------
-----------------------TGCCTATCCCAAAACCTATAGGAACTAATGATAAT--
--------C-C---ACCACCCTTTGCTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACACATGAGA--C------
>LTR7B_chr1_Sltr_31__chr1_1715132117151751__
TGTCAGGCCTCTGAGTCCAAG-----------------------CTAAGCTATCATATGC
CCTGTGAC---------------------------------------------CTGCACG
TGTACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ACACACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTG----------------------------------------
------------------------------------------------------------
------------------------------------TAA--TCTCCCCCACCCTTAAGAA
GGT------------------------------TCTTT----GTAAT----TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCAACCCCTG
CCTGCAAAACATTGCTCCTAACTCCAC---------------------------------
-----------------------TGCCTATCCCACAACTTATAAAAACTAATGATAAT--
--------C-C---ATCACCCTTTGCTGACT--CTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTA--TTT--GGTGGTCT
CTTCACATGGACACATGAGA--C------
>LTR7B_chr7_2ltr_int_fr_1527__chr7_138329255138329687_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTGTGTCATTGTATCC
CCTGTGAC---------------------------------------------CTGCACG
TCTACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTG----------------------------------------
------------------------------------------------------------
------------------------------------TAA--TCTCCCCAACTCTTAAGAA
GGT------------------------------TCTTT----GTAAT----TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCATCCCCTG
CCTGCAAAACATTTCTCCTAACTCCAC---------------------------------
-----------------------CACCTATTCCAAAACCTATAAGAACTAATGATAAT--
-------CC-C---GCCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--CGTGGTCT
TTTCACACGGACGCGTGAGA--CA-----
>LTR7B_chr20_Sltr_932__chr20_4762261147623013__
TGTCAGGCCTCTGAGACCAAG---------------------------------------
-------C---------------------------------------------CTGCACA
TATACATCCAGA------------------------------------------------
-----------------------------TGGTCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGA--TGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTG----------------------------------------
------------------------------------------------------------
------------------------------------TAA--TCTCCCCCACCCTTAAGAA
GGT------------------------------TCTTT----GTAAT----TCTCCC---
-------------TA-CCCTT---------GAGAATGTACTTTGTGAGATCTAACCCC-G
CCCGCAAAACATTGCTCCTAACT-CAC---------------------------------
-----------------------TGCCTATCCCAAAACCTATAAGAACTAATGATAAT--
-------CC-C---ACCACCCTTTGCTGACTCTCTTTTTGGACTCAGCCTGCCTGTACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGTCTG--------GTGGTCT
CTTCACACGGACGCACGTGA--C------
>LTR7B_chr10_2ltr_int_fr_178__chr10_3540829435408752__
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATTC
CCAGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTAAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAAGAGC--------------------------
---------------------------------C----------TTAA----CTGATGAT
ATT---------------------------------------------------------
-------------------------------CTACCATTGTGATTTGTTTCTGCCCTACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATACTTTGTAA-T-----------------------------------
------------------------CTCCCCCACCCTTAAG--------------AAGGTT
CTT-------------------------------CATAA--TCTCCCCCACCCTTAAGAA
GGT------------------------------TCTTT----GTAAT----TCTCCC---
-------------CG-CCCTT---------GAGAATG-----TGCGAGATCCACCCCCTG
CCCCCAAAACATTGCTCTTAACTCCAC---------------------------------
-----------------------TGCCTATCCCAAAACCTGTAAGAACTAATGATAAT--
-------CC-C---ACCACCCTTTGCTGACTCTCTTTTCTGACTCAGCCTGCCGGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--TGTGGTCT
CTTCACATGCACATGTGAGA--C------
>LTR7B_chr3_Sltr_999__chr3_128968890128969350_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCAGTGAC---------------------------------------------CTGCATG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTAACT-AT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAA-T-----------------------------------
------------------------CTCCCCCACACTTAAG--------------AAGGTT
CTT-------------------------------TATAA--TCTCCCCCACCCTTAAGAA
GGT------------------------------TTTTT----GTAAT----TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG
CCCCCAAAACATTGCTCTTAACTCCAC---------------------------------
-----------------------TGCCTATCCCAAAACCTGTAAGAACTAATGATAAT--
-------CC-C---ACCACCCTTTGCTGACTCTCTTTTCAGACTCAGCCTGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTACTTACACAAAGCCTG--TT-----TGGTCT
CTTCACACGGACATGTAAGA--CA-----
>LTR7B_chr1_Sltr_25__chr1_162316530162316961__
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCAGTGAC---------------------------------------------CTGCACA
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAAC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGCTTCTGCCC-ACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAA-T-----------------------------------
------------------------CTCCCCCA----------------------------
--------------------------------------------------CCTTTAAGAA
GGT------------------------------TCTTT----GTAAT----TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG
CCCCTAAAACATTGCTCTTAACTCCAC---------------------------------
-----------------------TGCCTATCCCAAAACCTCTAAGAACTAATGATAAT--
-------CC-C---ACCACCCTTTGCTGACTCTCTTTTGGGACTCAGTCTGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGGGGTCT
CTTCACATGGACATGTAAGA--C------
>LTR7B_chr11_2ltr_int_fr_227__chr11_1452426114524693_+_
-GTCAGGCCTCTGAGCTCAAG-----------------------CTAAGCCATCATATCC
CCAGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATTCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGACGAA
GTT---------------------------------------------------------
-------------------------------CCACCAT--TGATTTATTTCTGCCCCAAC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAA-T-----------------------------------
------------------------CTCCCCC-----------------------------
-------------------------------------------------ACCCTTAAGAA
GGT------------------------------TCTTT----GTAAT----TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG
CCCCCAAAACATTGCTCTTAACTCCAC---------------------------------
-----------------------TGCCTATCCCAAAACCTCTAAGAACTAATGATAAT--
-------CC-----ACCACCCGTTGCTGACTCTCTTTTTGGACTCAGCCCGTCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTAGTCT
CTTCACACGGACACGTAAGA--CA-----
>LTR7B_chr13_Sltr_405__chr13_4141011341410558__
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAACCATCATATCC
CCAGTGAC---------------------------------------------CTGCAAG
TATACATGCACA------------------------------------------------
-----------------------------TGACCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ACCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTAACTGAT-------CAGT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAA-T-----------------------------------
------------------------CTCCCCCACCC-------------------------
--------------------------------------A--TCTCCACTACCCTTAAGAA
GGT------------------------------TCTTT----GTGAT----TCTCTC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG
CCCCCAAAACATTGCTCTTAACTCCAC---------------------------------
-----------------------CGCCTATTCCAAAACCTGTAAGAACTAATGAGAAT--
-------CC-C---ACCACCCTTTGCTGACTCTCTTTTTGGACTCAGCCTGACTACACCC
AGGTGA-----AA--TAAGCAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACATGTGAGA--C------
>LTR7B_chr17_Sltr_616__chr17_8015328080153743_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCACCATATCC
CCAGGGAC---------------------------------------------CTGCACA
TGTACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACCGAAG------------
------------------------------------------------------------
----------ATACACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACA
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAA-T-----------------------------------
------------------------CTCCCCTACCCTTAAG--------------AAGTTT
CTT-------------------------------TATAA--TCTCCCACACCCTTAAGAA
GGT------------------------------TCTTT----GTAAT----TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCTCCCCCTG
CCCCCAAAACATTGCTCTTAACTCCAC---------------------------------
-----------------------CGCCTATCCCAAAACCTATAAGAACTAATGATAAT--
-------CC-C---ACCAC-CTTTGCTGACTCTCTTTTTGGACTCAGCCTGCCTGCACCC
AGGTGA-----AA--TAAGCAGCCGTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACAAGGACACGTGAGA--CA-----
>LTR7B_chr11_2ltr_int_fr_284__chr11_9502459995025062__
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCAGTGAC---------------------------------------------CTGCACA
TACACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAA-T-----------------------------------
------------------------CTCCCCCACCCTTACG--------------AAGTTT
CTT-------------------------------TATAA--TCTCCCCCACCCTTAAGAA
GTT------------------------------TCTTT----GTAAT----TCCCCC---
-------------CA-CCCTC---------GAGAATGTACTTTGTGAGATCCACCCCCTG
CCCCCAAAACATTGCTCTTAACTCCAC---------------------------------
-----------------------CACCTATCCCAAAACCTGTAAGAACTAATGATAAT--
-------CC-C---ACCACCCTTTGCTGACTCTCTTTTTGGACTTAGCCCGCCTGCACCC
AGGAGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTC--TTT--GGGGGTCT
CTTGACACGGACACGTGAGA--C------
>LTR7B_chrX_2ltr_int_fr_1756__chrX_117417846117418308_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCAGTGAC---------------------------------------------CTGCAGG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGT-ATTTGTTTCTGCCCCACT
CTAACTGAC-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAA-T-----------------------------------
------------------------CTCCCCCACCCTTAAG--------------AAGGTT
CTT-------------------------------TATAA--TCTCCCCCACCCTTAAGAA
GGT------------------------------TCTTT----GTAAT----TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG
CCCCCAAAACATTGCTCTTAACTCCAC---------------------------------
-----------------------CATCTATCCCAAAACTTATAAGAACTAATGATAAT--
-------CC-C---ATCACCCTTTGCTGACTCTCTTTTTGGACTCAGCCCACATGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGTGTG--TTT--GGTGGTCT
CTTCATACGGACATGTGAGG--CA-----
>LTR7B_chrY_Sltr_1890__chrY_2195161121952074__
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CTTGTGAC---------------------------------------------CTGCACG
TGTACATCCAGA------------------------------------------------
-----------------------------TGGCCTGTAGCAACTGAAG------------
------------------------------------------------------------
----------ATCTACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGAGTTGTTTCTGCCCTACT
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTAATTTGTAA-T-----------------------------------
------------------------CTCCCCCACCCTTAAG--------------AAGGTT
CTT-------------------------------TATAA--TCTCCCTCACCCTTAAGAA
GGT------------------------------TCTTT----GTTAT----TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG
TCCCCAAAACATTGCTCTTAATTCCAC---------------------------------
-----------------------TGCCTATCCCAAAACATATAAGAACCAATGATAAT--
-------CC-C---ACCACCCTTTGCTGACTCTCTTTTTGGACTCAGCCTGCCTGCCACC
AGCTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGGGGTCT
CTTCACACGGACACGTGAGA--C------
>LTR7B_chrY_Sltr_1891__chrY_2263431622634779_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CTTGTGAC---------------------------------------------CTGCACG
TGTACATCCAGA------------------------------------------------
-----------------------------TGGCCTGTAGCAACTGAAG------------
------------------------------------------------------------
----------ATCTACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGAGTTGTTTCTGCCCTACT
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTAATTTGTAA-T-----------------------------------
------------------------CTCCCCCACCCTTAAG--------------AAGGTT
CTT-------------------------------TATAA--TCTCCCTCACCCTTAAGAA
GGT------------------------------TCTTT----GTTAT----TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG
TCCCCAAAACATTGCTCTTAATTCCAC---------------------------------
-----------------------TGCCTATCCCAAAACATATAAGAACCAATGATAAT--
-------CC-C---ACCACCCTTTGCTGACTCTCTTTTTGGACTCAGCCTGCCTGCCACC
AGCTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGGGGTCT
CTTCACACGGACACGTGAGA--CA-----
>LTR7B_chrY_Sltr_1892__chrY_2356141023561873__
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CTTGTGAC---------------------------------------------CTGCACG
TGTACATCCAGA------------------------------------------------
-----------------------------TGGCCTGTAGCAACTGAAG------------
------------------------------------------------------------
----------ATCTACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGAGTTGTTTCTGCCCCACT
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTAATTTGTAA-T-----------------------------------
------------------------CTCCCCCACCCTTAAG--------------AAGGTT
CTT-------------------------------TATAA--TCTCCCTCACCCTTAAGAA
GGT------------------------------TCTTT----GTTAT----TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG
TCCCCAAAACATTGCTCTTAACTCCAC---------------------------------
-----------------------TGCCTATCCCAAAACATATAAGAACCAATGATAAT--
-------CC-C---ACCACCCTTTGCTGACTCTCTTTTTGGACTCAGCCTGCCTGCCACC
AGCTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGGGGTCT
CTTCACACGGACACGTGAGA--C------
>LTR7B_chrY_Sltr_1893__chrY_2610874426109207_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CTTGTGAC---------------------------------------------CTGCACG
TGTACATCCAGA------------------------------------------------
-----------------------------TGGCCTGTAGCAACTGAAG------------
------------------------------------------------------------
----------ATCTACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGAGTTGTTTCTGCCCCACT
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTAATTTGTAA-T-----------------------------------
------------------------CTCCCCCACCCTTAAG--------------AAGGTT
CTT-------------------------------TATAA--TCTCCCTCACCCTTAAGAA
GGT------------------------------TCTTT----GTTAT----TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG
TCCCCAAAACATTGCTCTTAACTCCAC---------------------------------
-----------------------TGCCTATCCCAAAACATATAAGAACCAATGATAAT--
-------CC-C---ACCACCCTTTGCTGACTCTCTTTTTGGACTCAGCCTGCCTGCCACC
AGCTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGGGGTCT
CTTCACACGGACACGTGAGA--CA-----
>LTR7B_chr18_2ltr_int_fr_627__chr18_3200048332000946_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCAGTGAA---------------------------------------------CTGCACA
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACTATTGTGATTGGTTTCTGCCCCACC
TTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAA-T-----------------------------------
------------------------CTCCCTCACCCTTAAG--------------AAGGTT
CTT-------------------------------TATAA--TCTCTCCCACCCTTAAGAA
GGT------------------------------TCTTT----GTAAT----TCTCCC---
-------------CG-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG
CCCCCAAAACATTGCTCTTAATTCCAC---------------------------------
-----------------------CGCCTATCCCAAAACCTATAAGAACTAATGATAAT--
-------CC-C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCAGCCTGCACCC
AGGTAA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACACGTGAGA--CA-----
>LTR7B_chr1_Sltr_126__chr1_6513726165137680_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAG-----------
CCTGTGAC---------------------------------------------CTGCGTG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAG---TGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCATCATCGTGATTTGTTTCTGACCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAA-T-----------------------------------
------------------------CTTCCCCA----------------------------
--------------------------------------------------CCCTTAAGAA
GGT------------------------------TCTTT----ATAAT----TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACTCCCTG
CCCGCAAAACATTGCTCCAAACTCCAC---------------------------------
-----------------------CGCCTATCCCAAAACCTGTAAGAACTAATGATAAT--
--------C-C---ACCACACTTCGCTGACTCTCTTTTCAGACTCAGCCCGCCCGCACCC
AGGTGA-----AA--TAAACAGCCATGT-GCTCACACAAGCCCTA--TTT--GGTGGTCT
CTTCACACGGGCACGTGAGA--CA-----
>LTR7B_chr17_Sltr_fr_606__chr17_6742481567425185_+_
-GTCAGGCCTCTCAGCCCAAG-----------------------CTAAG-----------
CATGTGAC---------------------------------------------CTTCGTG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAG---TGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCATCATTGTGATTTGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAA-T-----------------------------------
------------------------CTTCCCCA----------------------------
--------------------------------------------------CCCTTAAGAA
GTT------------------------------TCTTT----ATAAT----TCTCCC---
-------------CA-CCCTT---------AAGAATGTACTTTGTGAGATCCACCCCCTG
CCTGCAAAACATTCCTCCAAATTCCAC---------------------------------
-----------------------CGCCTATCCCAAAACCTGTAAGAACTAATGATAAT--
--------C-C---ACCACACTTCGCTGACTCT--TTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGT---------------------T--G-------
-----------------------------
>LTR7B_chr16_Sltr_534__chr16_1540930215409727_+_
-GTCCGTCCTCTGAGCTCAAG-----------------------CTAAGCCATCATATC-
CCAGTGAC---------------------------------------------CTGCACA
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTTACTGAAG------------
------------------------------------------------------------
----------ATCCAC--AAG---TGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------GCACCATTGTGATATGTTACTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAA-T-----------------------------------
------------------------CTCCC--A----------------------------
--------------------------------------------------CCCTTAAGAA
GGT------------------------------TCTTT----TTAAT----TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCA-CCCCTG
CCCGCAAAACATTGCTCCAAACTCCAC---------------------------------
-----------------------CACCTATCCCCAAACCTGTAAGAACTAATGATAAT--
--------C-C---ACCACCCTTTGCTGACTCCTTTTTTGGACTCAGCCCGCCTGCACTC
AGGTGA-----AA--TAAACAGCCATGTTGCTCATACAAAGCCTG--TTT--GGTGGCCT
CTTCACACGGACACGTGAGA--CA-----
>LTR7B_chr3_Sltr_1087__chr3_42050154205444_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCACCATATCC
CCAGTGAC---------------------------------------------CTGCACA
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCAC--AAG---TGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTACTGCCCCAC-
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGCAA-T-----------------------------------
------------------------CTCCCCAA----------------------------
--------------------------------------------------CCCTTAAGAA
GGT------------------------------TCTTT----GTAAT----TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG
CCCGCAAAACATTGCTCCAAACTCCAC---------------------------------
-----------------------CACCTATCCCCAAACCTATAAGAACTAATGATAAT--
--------C-C---ACCACCTTTTGCTGACTGTCTTTTTGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCTTG--TCT--GGTGGTCT
CTTCACACGGACACATGAGA--CA-----
>LTR7B_chr2_Sltr_844__chr2_233213615233214043__
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCGTATCC
CCAGTGAC---------------------------------------------CTGCATG
TATACATCCAGA------------------------------------------------
-----------------------------TGACCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCAC--AAG---TGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTACTGCCCCACC
CTAACTGAT-------CACT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTCTGTAA-T-----------------------------------
------------------------CTCCCCGA----------------------------
--------------------------------------------------CCCTTAAGAA
GGT------------------------------TCTTT----GTAAT----TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCTCTG
CCTGCAAACCATTGCTCCAAACTCCAC---------------------------------
-----------------------CACCTATCCCAAAACCTCTAAGAACTAATGATAAT--
--------C-C---ACCACCCTTTGCTGACTCCTTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAATGGCCATGTTGCTAACACAAAGCCTG--TTT--GGTGGTCT
TTTCACACGGACACGTGAAA--C------
>LTR7B_chr15_Sltr_515__chr15_6241854762418978__
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCAGTGAC---------------------------------------------CTGCATA
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCAC-AAAG---TGAAAATAGT--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGCTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAA-T-----------------------------------
------------------------CTCCCCCA----------------------------
--------------------------------------------------CCCTTAAGAA
GGT------------------------------TCTTT----ATCAT----TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCAGCCCCTG
CCAGCAAAACATTGCTCCAAACTCCAG---------------------------------
-----------------------CGCCTATCTCAAAACCTATAAGAACTAATGATAAT--
--------C-C---ACCACCTTTTACTGACTCTCTTTTCTGACTCATCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGTTCT
CTTCATACGGACACGTGAGA--C------
>LTR7B_chr15_Sltr_513__chr15_5732575957326198__
TGTCAGGCCTCTGAGCCCAAG-----------------------CTGAGCCATCATATCC
CCTGTGAC---------------------------------------------TGGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTAAAG------------
------------------------------------------------------------
----------ATCCACAAAAG---TGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ACT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAA-T-----------------------------------
------------------------CTCCCCCA----------------------------
--------------------------------------------------CCCTGAAGAA
GGT------------------------------TCTTT----GCAAT----TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCAGCCCCTG
CCAGCAAAACATCGCTCCAAACTCCAC---------------------------------
-----------------------CGCCTATCCCAAAACCTGTAAGAACTAATGATAAT--
--------C-C---ACCACCCTTTGCTGGCTTTCTTTTAGGACTCAGCCC-CCTGCGCCC
AGGTGA-----AA--TAAACAGGCTTGTTGCTCACACAAAGCCTG--CTT--GGTGGTCT
CTTCACATGGACACGTGAAA--C------
>LTR7B_chr15_Sltr_514__chr15_5844367558444104__
TGTCAGGCCTCTGAGCCCAAG-----------------------CTGAGCCATCGTAGCC
CCTGTGAC---------------------------------------------TGGCACG
TATACACCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAG---TGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ACT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAA-T-----------------------------------
------------------------CTCCCCCA----------------------------
--------------------------------------------------CCCTGAAGAA
GGT------------------------------TCTTT----GCAAT----TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG
CCCGCAAAACATTGCTCCAAACTCCAC---------------------------------
-----------------------CGCCTATCCCAAAACCTGTAAGAACTAACGATAAT--
--------C-C---ACCACCCTTTGCTGACTCCTTTTTCAGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--CTT--GGTGGTCT
CTTCACATG----CGTGAGA--C------
>LTR7B_chr2_Sltr_768__chr2_127812658127813086_+_
-GTCAGGCCTCAGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCAGTGAC---------------------------------------------TTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAG---TGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTAATTTGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAA-T-----------------------------------
------------------------TTCCCCGA----------------------------
--------------------------------------------------CCCTTAAGAA
GGT------------------------------TCTTT----ATAAT----TCTCCC---
--------------A-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG
CCCACAAAACATTGCTCCAAACTCCAA---------------------------------
-----------------------TGCCTATCCCAAAACCTGTAAGAACTAATGATAAT--
-------CC-C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACACGTGAGA--CA-----
>LTR7B_chr6_Sltr_fr_1456__chr6_35475193547948_+_
--TCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCAGTTAC---------------------------------------------CTGCACA
TATACACCCAGA------------------------------------------------
-----------------------------TGGCCCGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAGAAG---TGAAAATAGC--------------------------
---------------------------------C----------TTAA----CGGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTGGCTTCTGCCCCACC
CTAAGTGAC-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAA-T-----------------------------------
------------------------CTCCCCCA----------------------------
--------------------------------------------------CTCTTAAGAA
GTT------------------------------TCTTG----GTAAT----TCTCCC---
-------------CA-CTCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG
CCCCCAAAACATTGCTCCTGACTCCAC---------------------------------
-----------------------CGCCTATCCCAAAACCTGTAAGAACCAATGATAAT--
-------CC-C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCATACGGACACGTGAGA--CA-----
>LTR7B_chr15_2ltr_int_fr_504__chr15_4288475942885185_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAG----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTC---------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------------CCCCCACCCTTAAT--------------AAGGTT
CTT-------------------------------TGTAA--TCTCCCCCACGCTTAAGAA
CAT------------------------------TCTTT----GTAAT----TCTTCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCTATCCCCCG
CCCACAAAACATTGCTCCTAACTCCAC---------------------------------
-----------------------CACCTATCCCAAAACCTATAAGAACTAATGATAAT--
-------CC-C---ACCACCCT-TGCTGACTCTCTTTTCGGGCTCAGCCCACCTGCACCT
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGGCTG--TTT--GGTGGTCT
CTTCACACAGACACGTGAGA--CA-----
>LTR7B_chr19_Sltr_fr_658__chr19_1958554519585977_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CTTGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCCACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTAATTTGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAA-T-----------------------------------
------------------------CTCCCCCACCCTTAAG--------------AAGGTT
CTT-------------------------------TGTAA--TTCTTTCCACCCTTGAGAA
------------------------------------------------------------
-----------------------------------TGTACTTTGTGAGATCCACCCCCTG
CCCAAAAAACATTACTCCTAACTTCAC---------------------------------
-----------------------CGCCTATCCCAAAACCTATAAGAACTAATGATAAT--
-------CC-C---ACCACCCT-TGCTGACTCTCTTTTTGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACAGAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGTGAGA---------
>LTR7B_chrX_Sltr_1773__chrX_142431150142431610_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTCCATG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCGACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCGTTGTGATTTGTTTCTGCCTCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGGTA-T-----------------------------------
------------------------CTCCCCCACCCTTAAG--------------AAGGTT
CTT-------------------------------TGTAA--TCCCCCCCACCCTTGAGAA
GGT------------------------------TCTTT----GTAAT----TCTCCT---
-------------CA-CCCTT---------GAGAATGCACTTTGTGAGATCCATCCCCTA
CCCACAAAACATTGCTCCTAACTTCGC---------------------------------
-----------------------CGCCTGTCCCAAAACCTGTAAGAACTAGTGATAAT--
-------CC-C---ACCACGCT-TGCTGACTC--TTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTAACACAAAGCCTG--TTT--GATGGTCT
CTTCACACGGGCGCGTGAGA--CA-----
>LTR7B_chr14_Sltr_450__chr14_3248983232490295__
TGTCAGGCCTCTGAGCCCGAG-----------------------CTAAGCCATCATATCC
TCTGTGAC---------------------------------------------CTGCACA
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTG-TTCTGCCCTATC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTTA-C-----------------------------------
------------------------CTCCCTCACCCTTAAG--------------AAGGTT
CTT-------------------------------TGTAA--TCTCCCCCACCCTTAAGAA
GGT------------------------------TCTCT----GTAAC----TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG
TCCGAAAAACATTGCTCCTAACTCCAC---------------------------------
-----------------------TGCCTATCCCAAAACCTATAAGAACTAATGATAAT--
-------CC-C---ACCACCCTTTGCTGACTCTCTTTTCAGACTTAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACACGTGAGA--C------
>LTR7B_chr3_Sltr_1086__chr3_4196458441965016_+_
-GTCAGGCCTCTGAGCCTAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCATGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGATGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTACCTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------TTA---------------------------------------------
------------------------------------------------------------
CTT-------------------------------TGTAA--TCTCCCCCACCCTTAAGAA
GGT------------------------------TCTTT----GTAAT----TCTCCC---
-------------CA-CCCTT---------GAAAATGTACTTTGTGAGATCCATCCTCTG
CCCGCAAAACATTGTTCCTGACTCCAC---------------------------------
-----------------------CGCCTATCCCAAAACCTATAAGAACTGACGATAAT--
-------CC-C---ACCACCC-CTGCTGACTCTCTTTTCAAACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACGAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACACGTGAGA--CA-----
>LTR7B_chr20_2ltr_int_fr_927__chr20_4467022944670691_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCGTCATATCC
CCTGTGAC---------------------------------------------CTGCATG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
CTT---------------------------------------------------------
-------------------------------TCACCATTGTGATTTGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA---------------------------------------------
------------------------------------------------------------
CTT-------------------------------TGTAA--TCTCCCCCACCCTTAAGAA
AGT------------------------------TCTTT----GTAAT----TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCGCTG
CCCACAAAACATTGCTCCTAACTCCAC---------------------------------
-----------------------TGCCTATCCCAAAACCTGTAAGAACTAATGATAAT--
-------CC-C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCATCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGATGCGTGTGA--CA-----
>LTR7B_chr3_Sltr_1100__chr3_5845035758450756_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
TCTGTGAC---------------------------------------------CTGCATG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAA------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCT--------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------------------------------CCCCCACCCTTAAGAA
GGT------------------------------TCTTT----GTAAT----TTCCCC---
-------------CA-CCCTT---------AAGAATGTACTTTGTGAGATCCACCCCCTG
CCCACAAAACATTGCTCCTAACTCCAC---------------------------------
-----------------------CGCCTATCCCAAAACCTATTAGAACTAATGATAAT--
-------CC-C---ACCACCCTTTGCTAACTGTCTTTTCAGACTCAGCCCGTCTGCACCC
AGGTGA-----AA--TAAATAGCCTTGTTGCTCACACAACGCCTG--TTT--GGTGGTCT
CTTCACACAGATGCGTGAGA--CA-----
>LTR7B_chr10_Sltr_170__chr10_1859796518598392_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATAATATCC
CCTGTGAC---------------------------------------------CCGAATG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAATTAGC--------------------------
---------------------------------T----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACT
CTC----AT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA---------------------------------------------
------------------------------------------------------------
CCT-------------------------------TGTAA--TCTCCCCCACCCTTAAGAA
GGT------------------------------TCTTT----GTAAT----TCTCCC---
-------------CA-TCCTT---------GAGAATGTACTTTGTGAGATCCACC-CCTG
CCCGCAAAACATTGCTCCTAACTCCAC---------------------------------
-----------------------CGCCTATCCCAAAACATGTAAGAACTAATGATAAT--
-------CC-C---ATCACCCTTTGCTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGCTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACACGTGAGA--CA-----
>LTR7B_chr7_Sltr_1512__chr7_11610081161440__
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCAGTGAC---------------------------------------------CTGCATG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAACAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCCTTGTAATTTGTTTCTGCCCCATC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA---------------------------------------------
------------------------------------------------------------
CTT-------------------------------TGTAA--TCTCCTCTACCCTTAAGAA
GGT------------------------------TCTTT----GTAAT----TCTCCC---
-------------CA-CCCTT---------GAGAATGTACCTTATGAGATCCACCACCTG
CCTGCAAAACATTGCTCCTAACTCCAC---------------------------------
-----------------------CGTCTATCCCAAAACCTGTAAGAACTAATGATAAT--
-------CC-C---ATCGCCCTTTGCTGACTCTCTTTTCCGACTCAGCCGGGCTGCACCC
GGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACATGTGAGA--C------
>LTR7B_chr2_Sltr_848__chr2_237850512237850942__
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATTC
CCAGTGAC---------------------------------------------CTGTACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
GTT---------------------------------------------------------
-------------------------------CCAGCATTGTGATTTATTTCTGCCCCAAG
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA---------------------------------------------
------------------------------------------------------------
CTT-------------------------------TGTAA--TCTCCCCCACCTTTAAGAA
GGT------------------------------TCTTT----GTAAT----TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCACCTG
CCCACAAAACATTGCTCTTAACTCCAC---------------------------------
-----------------------CACCTATCCCAAAACCT-TAAGAACTAATGATAAT--
--------C-C---ACCACACTTTGCTGACTCTCTTTTCAGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTA--TTT--GGTGGCCT
CTTCACACGGACACGTGAGA--C------
>LTR7B_chr9_Sltr_1674__chr9_124143029124143461_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TAGACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAACAAGTGAAAACAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CTGCCATTGTGATTTCTTTCTGCCCCAAC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA---------------------------------------------
------------------------------------------------------------
CTT-------------------------------TGTAA--TCTCCCCCACCCTTTAGAA
GGT------------------------------TCTTT----GTGAT----TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG
CCCACAAAACATTGCTCCTAACTCCAC---------------------------------
-----------------------CGCCTATCCCAAAACCTGTAAGAACTAATGATAAT--
-------CC-C---ACCACACTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAATAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACACGTGAGA--CA-----
>LTR7B_chr1_Sltr_fr_93__chr1_2858601528586441_+_
---CAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
ACTGTGAC---------------------------------------------CTGCACA
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCC-CACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAA-T-----------------------------------
------------------------CTCCCCTATGCTTAAG--------------AAGGTT
CTT-------------------------------TGTAA--TTCTCCCCACCC-------
------------------------------------------------------------
-------------------TC---------AAGAATGTACTTTGTGAGATCCACCCCCTG
CCCAGAAAACATTGCTCCAAACT---C---------------------------------
-----------------------CAGCTATCCCAAAACCTGTAAGAACTAATGATAAT--
-------CC-C---ACCACACTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGTCTG--TTT--GGTGGTCT
CTTCACACAGACGCATGTGA--CA-----
>LTR7B_chr9_Sltr_fr_1723__chr9_8833225088332991__
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCAGA
TATGC-TCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCTACACTGTGATTTGTTCCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAA-T-----------------------------------
------------------------CTCCCCCACCCTTAAG--------------AAGGTT
CTT-------------------------------TGTAA--TTCTCCCCACCC-------
------------------------------------------------------------
-------------------TT---------GAGAATGTACTTTGTGAGATCCACCCCCTG
CCCACAAAACATTGCTCCTAACCCCAC---------------------------------
-----------------------CACCTATCCCAAAACCTATAAGAACTAATGATAAT--
-------CC-C---ACCACCCTTTGCTGACTCTCCTTTCGGACTCAGCCCGTCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTACTCACACAAAGCCTG--TTT--GGTGGTGT
CTTCACCCGGACGCATGTGA--C------
>LTR7B_chr12_Sltr_fr_291__chr12_104271048104271791__
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAACCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTGACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAA-T-----------------------------------
------------------------CTCCCTGACCCTTAAG--------------AAG---
------------------------------------------------------------
-GT------------------------------TCTTT----GTAAT-------------
------------------------------GAGAATGTACTTTGTGAGATCCATCCCCTG
CCCACAAAACATTGCTCCTAACTCCAC---------------------------------
-----------------------CGCCTATCCCAAAACCTATAAGAACTAATGATAAT--
-------CC-C---ACCACCCTTTGCTGACTCTCTTTTCTGACTCAGCCTGCCTGCACCC
AGGTGA-----AA--TAAACAGGCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
TTTCACACGGATGCACGTG----------
>LTR7B_chr2_Sltr_823__chr2_205938010205938473__
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------CTCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTGA-T-----------------------------------
------------------------CTCCCCCACCCTTAAG--------------AAG---
------------------------------------------------------------
-GT------------------------------TCTTT----ATAAT----TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG
CCCACAAAACATTGCTCCTAACTCCAC---------------------------------
-----------------------CGCCTATCCCAAAACCTATAAGAACTAATGATAAT--
-------CC-C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGATGCACGTG----------
>LTR7B_chr16_Sltr_579__chr16_7570550775705970__
TGTCAGTCCTCTGAGCCCGAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCAAG
TATACCTCCAGA------------------------------------------------
-----------------------------TGGCCTGGAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAAC--------------------------
---------------------------------C----------TTAA----CTGATGAT
ATT---------------------------------------------------------
-------------------------------CCACCCTTGTGATTTGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAA-T-----------------------------------
------------------------CTCTCCCACCCTTAAG--------------AAG---
------------------------------------------------------------
-GT------------------------------TCTTT----GTAAT----TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTGGTGAGATCCACCCCCTG
CCCACAAAACATTGCTCCTAACTCCAC---------------------------------
-----------------------CACCTATCCCAAAACCTATAAGAACTAATGATAAT--
-------CC-C---ACCACCCTTTGCTGACTCTCTTTTTGGACTCAGCCTGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGATGTGCGTGA--C------
>LTR7B_chrX_Sltr_1847__chrX_9429042594290875_+_
-GACAGTCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
C--GTGAT---------------------------------------------CTGCCCG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAT
ATT---------------------------------------------------------
-------------------------------CCACTATTGTGATTTATTTCTGC------
-----TGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAA-T-----------------------------------
------------------------CTCCCCCACCCTTAAG--------------AAG---
------------------------------------------------------------
-TT------------------------------TCTTT----GTAAT----TCTCCC---
-------------CA-CCTTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG
CCCACAAAACATTGCTCCTAACTCCAC---------------------------------
-----------------------CAACTATCCCAAAACCTATAAGAACTAATGATAAT--
-------CC-C---ACCACCCTTTGCTGACTCTCTTTTCAGACTCAGCCCGCCTGAACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCTTG--TTT--GGTGGTTT
CTTCACACGGACGTGCGTGA--CA-----
>LTR7B_chr9_Sltr_1697__chr9_3512076035121190_+_
-GTCAGGC--CTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCAAG
TATACATCCAGA------------------------------------------------
-----------------------------TCACCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAACAAGCGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTCGTAA-T-----------------------------------
------------------------CTCCCCCACCCTTAAG--------------AAG---
------------------------------------------------------------
-GT------------------------------TCTTT----GTAAT-----CTCCC---
-------------CA-CCCTT---------GAGAATGTATTTTGTGAAATCCACCCTCTG
CCCACAAAACATTGCTCCTAACTCCAC---------------------------------
-----------------------CACCTATCGCAAAACCTATAAGAACTAATGATAAT--
-------CC-C---ACCACCCTTTGCTGACTCCTTTTTTGGACTCAGCCTGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
TTTCACACGGATGTGTGAGA--CA-----
>LTR7B_chr8_Sltr_fr_1585__chr8_101162538101162958_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCGTCATATCC
CCTGTGAC---------------------------------------------CTGCATG
TATACATCCAGA------------------------------------------------
-----------------------------TCACCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCAC---AGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CT------
ATT---------------------------------------------------------
-------------------------------CCACCATTGTAATTCGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAA-T-----------------------------------
------------------------CTCTCCCATCCTTAAG--------------AAG---
------------------------------------------------------------
-GT------------------------------TCTTT----GTAAT----TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG
CCCACAAAACATTGCTCCTAACTCCAC---------------------------------
-----------------------CGCCTATCCCAAAACCTGTAAGAACTAATGACAAT--
-------CC-----ACCACCCTTTGCTGACTCTCTTTTTGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCACGTGA---------
>LTR7B_chr19_Sltr_685__chr19_3743458637435014_+_
-GTCAAGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
C--GTGAC---------------------------------------------CTGCATG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTAAAGCAATTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGACGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAA-T-----------------------------------
------------------------CTCCCCTACTCTTAAG--------------AAG---
------------------------------------------------------------
-GT------------------------------TCTTT----GTAAT----TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAAATCCACCCCCTG
CCCGCAAAACATTGCTCCTAACTCCAC---------------------------------
-----------------------CACCTATCCCAAAACTTACAAGAACTAATGATAAT--
-------CC-C---ACCACCCTTTGCTGACTC--TTTTTGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGCTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGTGCGCGTGTGA--CA-----
>LTR7B_chr5_Sltr_1350__chr5_2805183828052299_+_
-GTCAGGCCTCTAAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCATG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCAGCATTGTGATTTGTTTCTGCCCCACT
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAA-T-----------------------------------
------------------------TTCTCCCACCCTTAAG--------------AAGATT
CTT-------------------------------TGTAA--TCTCCCCCACCCTAAAGAA
GGT------------------------------TCTTT----GTAAT----TCTTCC---
-------------CA-CCCTC---------GAGAATGTACTTTGTGAGATCCA-CCCCTG
TCCGCAAAACATAGCTCCTAACTCCAC---------------------------------
-----------------------CACCTCTCCCAAAACCTATGGTAGCTAATGATTAT--
-------CC-C---ACCACACT-TGTTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GATGGTCT
CTTCACACGGACGCATGAGA--CA-----
>LTR7B_chr19_Sltr_687__chr19_4065997340660404_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCG
CCTGTGAC---------------------------------------------CTGCACG
TATACATCCAGG------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------AGCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTAA-TGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAA-T-----------------------------------
------------------------CTCCCCCACCCTTAAG--------------AAGTTT
CTT-------------------------------TGTAA--T------------------
---------------------------------------------------TCTTCC---
-------------CA-TCCTT---------GAGAATGAACTTTGTGAGATCCGCCCCCTG
CCCGCAAAACATTGCTCCAAACTCCAC---------------------------------
-----------------------CGCCTATCCCAAAACCTATAAGAATTAATCATAAT--
-------CC-C---ACCACCCTTTGCTGACTCTCTTTTTGGACTCAGCCTGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACAGGGACGCGTGTGA--CA-----
>LTR7B_chr1_Sltr_8__chr1_109836879109837310__
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATGC
CCTGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTAAGTGAT-------CAAC----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAA-T-----------------------------------
------------------------TTCCCCCA-CCTTAGG--------------AAGGTT
CTT-------------------------------TGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAACTTACTTTGTGAGATCCACCCCCTG
CCCGAAAAACATTGCTCCTAACTCCAC---------------------------------
-----------------------CGCCTATCCCAAAACCTATAAGAACTAACGATAAT--
-------CC-C---ACCACCCTTCGCTGACTCTCTTTTCAGACTCAGACCGCCTGCGCCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
GTTCACATGGACGCATGAGA--C------
>LTR7B_chr3_Sltr_980__chr3_112479980112480409_+_
-GTCAGGCCTTTGAGCCCAAG-----------------------CTAAGCCATCATATAC
CCTGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTTCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAA-T-----------------------------------
------------------------CTCCCCCACCCTTAAG--------------AAGTTT
CTT-------------------------------TGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAATGTATTTTGTGAGATCCACCCCCTG
CCCCCAAAACATTGCTCTTAACTCCAC---------------------------------
-----------------------TGCCTATCCCAAAACCTATAAGTACTAATGATAAT--
-------CT-C---ACCATCATTTGCTGACTCTCTTTTTGGACTCAGCCCGCCTGCA---
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTACACACGGACACATGAGA--CA-----
>LTR7B_chr3_Sltr_981__chr3_112554200112554626_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATAC
CCTGTGAC---------------------------------------------CTGCACG
TATACATCTAGA------------------------------------------------
-----------------------------TGTGCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----TTGATGAC
ACT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTAACTGAT-------CAAG----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAA-T-----------------------------------
------------------------CTCCCCCATCCTTAAG--------------AAGGTT
CTT-------------------------------TGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-TCCTT---------GAGAATGTATTTTGTGCCATCCACCCCCTG
CCCACAAAACATTGCTCCTAACTCCAC---------------------------------
-----------------------TGCCTATCCCAAAATCTATAAGAACTAATGATAAT--
-------CT-C---ACCATCCTTTGC------TCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTACACATGGACGCATGTGA--CA-----
>LTR7B_chr14_Sltr_483__chr14_9120074391201298__
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TATACATCTAGA------------------------------------------------
-----------------------------TGGGCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATGGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ACT---------------------------------------------------------
-------------------------------CCACCATCGTGATTTGTTCCTGCCCTACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAA-T-----------------------------------
------------------------CTCCCCCACCCTGAAG--------------AAGGTA
CTT-------------------------------TGTAA--T------------------
---------------------------------------------------TC-CCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG
CCCGCAAAAAATTGCTCCTAACTCCAC---------------------------------
-----------------------CACCTATCCCAAA-CCTATAAGAACTAATGATAAT--
-------CC-C---ACGACCCTTCGCTGACTCCTTTTTCGGACTCAGCCTGCCTGCACCC
AGGTGA-----AA--TAAACAGCCT-GTTGCTCACACAAAGCCTG--TTT--G-TGGTCT
CTTCACACAGACGCACGTGA--C------
>LTR7B_chr1_Sltr_127__chr1_6514543965145836_+_
-GTCAGGCCTCT-AGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAA---AGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCACTGTGATTTGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAA-T-----------------------------------
------------------------------------------------------------
------------------------------------------------------------
---------------------------------------------------TCTCCT---
-------------TA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCGCTG
CCCGCAAAACACTGCTCCTAACTCCAC---------------------------------
-----------------------CGCCTATCCGAAAATCTATAAGAACTAATGATAAT--
-------CC-C---ACCACCCTTTCCTGACTCTCTTTTCGGACTCAGCCCGCCGGCACCC
AGGTAA-----AA--TAAACAGCCTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGTGCGTGG--CA-----
>LTR7B_chr1_2ltr_int_fr_13__chr1_116862347116862811_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TATACATCTAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTAACTGAT-------CAGT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAA-T-----------------------------------
------------------------CT--------------CCCCCACCCTTAAGAAGGTT
CTT-------------------------------TGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAATGTATTTTGTGAGATCCACCCCCTG
CCCACAAAACATTGCTCCTAACTTCAC---------------------------------
-----------------------CGCCTATCCCAAAACCTATAAGAACTAATGATAAT--
-------CC-C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AAGTGA-----AA--GAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGAACATGCATGA--CA-----
>LTR7B_chr1_Sltr_147__chr1_9162719891627661_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TATATATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAGAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CCGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATACTTTGCAA-T-----------------------------------
------------------------CT--------------CCCCTGTCCTTAAGAAGGTT
CTT-------------------------------TGTAA--T------------------
---------------------------------------------------TCTCCT---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG
CCCCCAAAACATTGCTCCTAACTCCAC---------------------------------
-----------------------CGCCTATCCCAAAACCTGTAAGAACTGATGATAAT--
-------CC-C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGGGGTCT
CTTCACAGGAACACGTAAGA--CA-----
>LTR7B_chr7_Sltr_1558__chr7_4585995345860413__
TGTCAGGCCCCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
C--GTGAC---------------------------------------------ATGCACA
TACACATC-AGA------------------------------------------------
-----------------------------TAGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CTACCATTGTGATTTGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTATTTTGTAA-T-----------------------------------
------------------------CT--------------CCCCTACCCTTAAGAAGGTT
CTT-------------------------------TTTAA--T------------------
---------------------------------------------------TCTCCT---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCCCCCGCTG
CCCACAAAACATTGCTCCTAACTCTAC---------------------------------
-----------------------CGCCTATCCCAAAACCTGTAAGAACTAATGATAAT--
-------CC-C---ACCACCATTTGCTGATTCTCTTTTCAAACTCAGACTGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCTTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATGA--C------
>LTR7B_chr1_Sltr_fr_102__chr1_41780394178500__
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAG---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACGAAACAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGCAA-T-----------------------------------
------------------------CT--------------CCCCCACCCTTAAGAAGGTT
C-----------------------------------------------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG
CCCACAAAACATTGTTCCTAACTCCAC---------------------------------
-----------------------CGCCTATCTCAAAACCTGTAAGAACTAATGATAAT--
-------CC-C---ACCACCCTTTGCTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGTACGTG----------
>LTR7B_chr9_Sltr_1675__chr9_124143582124144014_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAA---------------------------------------------CTGCATG
TAGACATCCAGA------------------------------------------------
-----------------------------CGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAACAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAA-T-----------------------------------
------------------------CT--------------CCCCCACCCTTAAGAAGGTT
C-----------------------------------------------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCAACCCCTG
CCCGCAAAACATTGCTCCTAACTCCAC---------------------------------
-----------------------CGCCTATCCCAAAACCTGTAAGAACTAATGATAAT--
-------CC-C---ACCACC-TTTGCTGACTCTTTTTTTGGACTCAGACCGCCTGTACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCCG--TTC--GGTGGTCT
CTTCACACGGACGCATGAGA--CA-----
>LTR7B_chr6_Sltr_1461__chr6_4883728348837746_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACA
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACAGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------GCATCATTGTGATTTGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAA-T-----------------------------------
------------------------CT--------------CCCCCACCCTTAAGAAGTTT
C-----------------------------------------------------------
---------------------------------------------------CTCCCC---
-------------CA-CCCTT---------GAGAATGTACTATGTGAGATCCACCCCT-G
CCCCCAAAACATTGTTCCTAACTCCAC---------------------------------
-----------------------TGACTATCCCCAAACCTATAAGAACTGATGATAAT--
-------CC-C---ACCACCCTTTGCTGACCCCTTTTTCAGACTCAGCAGGTCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTTCTCCCACAGAGCCTG---TT--GGTGGTCT
CTTCACACGGATGCACGTGA--CA-----
>LTR7B_chr9_Sltr_fr_1729__chr9_9465048894650911_+_
-GTCAGGCCTCTGAGCCCATG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCATG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCGTGAAGCTACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----TTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAA-T-----------------------------------
------------------------CT--------------TCCCCACCCTTAAGAAGGTT
C-----------------------------------------------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCTTG
CCCTCAAAACATTGCTCCTAACTCCAC---------------------------------
-----------------------CGCCTATCCCAAAACCTGTAAGAACTAATGATAAT--
-------CC-C---ACCTCCCTTTGCTGACTCCTTTTTCAGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--CTT--GGTGGTCT
CTTCACTCAGATG----------------
>LTR7B_chrX_Sltr_1797__chrX_3288946532889890_+_
-GTCAGGACTCTGAG-----------------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCCCT
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAG-AGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAA-T-----------------------------------
------------------------CT--------------CCCCCACCCTTAAGAAGGTT
C-----------------------------------------------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG
CTCGCAAAACATCGCTCCTAACTCCAC---------------------------------
-----------------------CGCCTATCCCAAAACCTGTAAGAACTAATGATAAT--
-------CC-C---ACCACCCTTGGCTGACTCCTTTTTCAGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACTCGGAGGGGCGTGA--CA-----
>LTR7B_chr2_Sltr_879__chr2_6328620563286667_+_
-GTCAGGCCTCTGAGTCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACA
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTAACCGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAA-T-----------------------------------
------------------------CT--------------CCCCCACCCTTAAGAAGGTT
CTT-------------------------------TGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------TAGAA-GTACTTTGTGAGATCCACCCCCTG
CCCCCAAAACATTGCTCCTAACTCCAC---------------------------------
-----------------------CGCCTATCCCAAAACCTGTAAGAACTAATGATAAT--
-------CC-C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCCTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACACACGTGA--CA-----
>LTR7B_chr16_Sltr_fr_572__chr16_6689730166897733__
TGTCAGGCCTCTGAGCTCAAG-----------------------CTAAGCCATCATATCC
CTTGTGAC---------------------------------------------CTGCACC
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGGAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTTCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAA-T-----------------------------------
------------------------CT---------------CCC----------------
------------------------------------------------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAAGGTACTTTGTGAGATCCACTCCCTG
CCTGCCAAACATTGCTCCTAACTCCAC---------------------------------
-----------------------CGTCTATCCCCAAACCTATAAGAGCTAATGATAAT--
-------CC-C---ACCACCCTT-GCTGACTCCTTTTTCGGACTCAGCCCGCCTGAGTCC
AAAATA-----AA--TAAACAGCCTTGTTGCTCACACAAAACCTG--TTT--GGTGGTCT
CTTCACATGGACGTGCGTG----------
>LTR7B_chr3_Sltr_fr_1114__chr3_7889628678896663_+_
------------------AAG-----------------------CTAAGCCATCATATCC
CCAGTGAC---------------------------------------------CTGCACC
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGACGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTAATTTGCTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAA-T-----------------------------------
------------------------CT---------------CCC----------------
------------------------------------------------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG
CCCACAAAACATTGCTCCTAACTCCAC---------------------------------
-----------------------CGACTATCCCCAAACCTATAAGAACTAACGATAAT--
-------CC-C---ACTACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AAGTAA-----AA--TAAACAGCCTTGTTGCTCACAAAAA--------------------
-----------------------------
>LTR7B_chr22_Sltr_968__chr22_4274048542741050_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATGC
ACTGTGAC---------------------------------------------CTGCAGG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAGGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGCTGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGGTTTGTTTCTGCCCCACT
CTAACTGTT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAA-T-----------------------------------
------------------------CT---------------CCCCACCCTTAAGAAGGTT
CTT-------------------------------TGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCGCTG
CCCGCAAAACGTTGCTTCTAACTCCAC---------------------------------
-----------------------CGCCTATCCCCAAACCTGTAAGAACTAATGATAAT--
-------CC-C---ACCACCCTTTGCTGACTCTCCTTTCGGACTCAGCCCGCCTGCATCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAAGCTG--TTT--GATGGTCT
CTTAACAGGGACATGCATGA--CA-----
>LTR7B_chr19_Sltr_704__chr19_5440346054403923__
TGTCAGGCCTCTAAGCCCAAG-----------------------CTAAGCCATCCTATCC
CCTGTGAC---------------------------------------------CTGCATC
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACCGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGGGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAT
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC
CTGACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAA-T-----------------------------------
------------------------CT--------------TCCCCACCCTTAAGAAGGTT
CTT-------------------------------TGTAA--T------------------
---------------------------------------------------TTTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG
CCCGCAAAACATTGCTCCTAACTCCAC---------------------------------
-----------------------CGCCTGTCCCCAAACCTGTAAGAACTAATGATAAT--
-------CC-C---ACCACCCTTTACTGACTCTGTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGACT
CTTCACACGGACTCGCGTGA--C------
>LTR7B_chr6_Sltr_fr_1471__chr6_6584935865849819__
--TCAGGCCTCTGAGCCCAAG-----------------------CTAAACCATCATATCC
CCTGTGAC---------------------------------------------CTGCAGG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCGGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------GTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
GTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAA-T-----------------------------------
------------------------CT--------------CCCCCACCCTTAAGAAGGTT
CTT-------------------------------TGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCTACCCCCTG
CCCACAAAACATTGGTCCTGACTCCAC---------------------------------
-----------------------CGCCTATCCCAAAACCTATAAGAACTAATGATAAT--
-------CC-C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACAGGGACGCACGTGA--C------
>LTR7B_chr8_Sltr_fr_1627__chr8_5191619251916638__
----------------CCAAG-----------------------CTAAACCATCATATAC
CCCGTGAC---------------------------------------------CTGCATG
TAGACATCCAAA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAA------------
------------------------------------------------------------
----------ATCCACAAAATAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATC---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTAAGTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAA-T-----------------------------------
------------------------CT--------------CCCCCACCCTTAAGTAGGTT
CTT-------------------------------TGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GATAATGTACTTTGTGAGATCCATCCCCTG
CCCACA-AACATTGCTCCTAACTCCAC---------------------------------
-----------------------CCCCTATCCCCAAACCTATAAGAACTAATGATAAT--
-------CC-C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAGACAGCCTTGTTTCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGATGCACATGA--C------
>LTR7B_chr14_Sltr_451__chr14_3465029634650729_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------TTAAGCCATCATATCC
CCAGTGAC---------------------------------------------CTGCACT
TATACATCCACA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAGGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
TTAAATGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAA-T-----------------------------------
------------------------CT--------------CCCCCACCCTTAAGAAGATT
CTT-------------------------------TGTAA--T------------------
------------------------------------------------------------
--------------------------------------ACTTTGTGAGATTCACCCCCTG
CCCGCAAAACATTGCTCCTAACTCCAC---------------------------------
-----------------------CACCTATCCCAAAACCTGTAAGAACTAATGATAAT--
-------CC-C---ACCACCCTTTGCTGACTCCCTTTTCAAACTCAGCCCGCCTGCACCC
AGGAGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TT---GGTGGTCT
CTTCACCGGGATGCGCGTGA--CA-----
>LTR7B_chr14_Sltr_466__chr14_5282308152823574__
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
ACTGTGAC---------------------------------------------CTGCACT
TATATATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------T----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGCTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAA-T-----------------------------------
------------------------CT--------------CCCCCACCCTTAAGAAGGTA
CTT-------------------------------TGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG
CCCACAAAACATTGCTCCTACCTCCAC---------------------------------
-----------------------CACCTATCCCAAAACCTGTAAGAACTAATGATAAT--
--------C-C---ACCACCCTTTGCTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGTCTG--TTT--AGTGGTCT
CTTCACACGGACGCGCGTGA--C------
>LTR7B_chr6_2ltr_int_fr_1386__chr6_114017713114018145__
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
TCTATGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------GGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGACGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAA-C-----------------------------------
------------------------CT--------------CCCCCACCCTTAAGAAGGTT
CTT-------------------------------TGTAA--T------------------
---------------------------------------------------TCTCTC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCACTG
CCTGCAAAACATTGCTCCTAACTCCAC---------------------------------
-----------------------CGCCTATCCCAAAACCTGTAAGAACTAACGATAAT--
-------CC-C---ACCACCCTTTGCTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTTCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACACGCATGA--C------
>LTR7B_chr6_Sltr_1483__chr6_8540429185404719_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTG-ACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCTACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCACTGTGATTTGTTTCTGCCCCACC
CTAACTGAC-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAA-T-----------------------------------
------------------------CT--------------CCCCCACCCTTAAGAAAGTT
CTT-------------------------------TGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-TGCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG
CCCACAAAACATTGCTCCTAACTCCAC---------------------------------
-----------------------CGCCTATCCCCAAACATGTAAGAACTGATGATAAT--
-------CC-C---AC---ACTTGGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AAGTGA-----AA--TAAACAGTCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTAT
CTTCACACGGACGCGCATGA--CA-----
>LTR7B_chr13_Sltr_399__chr13_2462851524628944_+_
-GTCAGGCCTCCGGGCCCAAG-----------------------TTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCATG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCTTGAGGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAT
GTT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTAAC-AAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAA-T-----------------------------------
------------------------CT--------------CCCCCACCCTTAAGAAGGTT
CTT-------------------------------TGTAG--T------------------
---------------------------------------------------TCTCCT---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCGCTG
CCCACAAAACATTGCTCCTAACTCCAC---------------------------------
-----------------------TGCCTATCCCAAAACCTATAAGAACTAATGATAAT--
-------CC-C---ACCACCCTTGGCTGACTCTCTTTTCGGACTCAGCCTGCGTACACCC
AGGTGA-----AA--TA--CAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGTGCATGA--CA-----
>LTR7B_chr4_Sltr_1227__chr4_3501873635019171_+_
-GTCAGGCGTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCATG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAACAACTGAAT------------
------------------------------------------------------------
----------ATCCATGAAATAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAA-T-----------------------------------
------------------------CT--------------CGCCCACCCTTAGGAAGGTT
CTT-------------------------------CGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAATATACTTCGTGAGATCCACCCCCTG
CCTGCAAAACATTTCTCCTAACTCCAC---------------------------------
-----------------------TGCCTATCCCAAAACCTATAAGAACTAATGATAAT--
-------CC-C---ACCACCCTTTACTGACTCTCTTTTGGGACTCAGCCTGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
TTTCACATGGACGTGCATGA--CA-----
>LTR7B_chr16_Sltr_558__chr16_51926845193149__
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAACCATCATATCC
TCTGTGAC---------------------------------------------CTGCATA
TATACATTCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCACTGTGATTTGTTTCTTCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAA-T-----------------------------------
------------------------CT--------------CCCCCACCCTTAAGAAGGTT
CTT-------------------------------TGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAAAGTACTTTGTGAGATCCACCCACTG
CCCGCAAAACATTGCTCCTAACTCCCC---------------------------------
-----------------------TGCCTATCCCAAAACCTATAAGAACTAATGATAAT--
-------CC-C---CCTACCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCATCC
AGGTAA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGATGTGCATGA--C------
>LTR7B_chr1_2ltr_int_fr_33__chr1_178040241178040673_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACA
TATACATTCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATTCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTGA-T-----------------------------------
------------------------CT--------------CCCCCACCCTTAAGAAGGTT
CTT-------------------------------TGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG
CCCGCAAAACATTGCTCCTAACTCCAC---------------------------------
-----------------------CGCCTACCCCAAAACCTATAAGAACTAATGATAAT--
-------CC-C---ACCACCCTTTGCTGACTCTCTTTTCGGACTTAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTA--TTT--GGTGGTCT
CCTCACATGGACGTGCATGA--CA-----
>LTR7B_chr6_Sltr_fr_1424__chr6_151129380151129803_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACA
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAGGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAA-T-----------------------------------
------------------------CT--------------CCCCCACCCTTAAGAAGGTT
CTT-------------------------------TGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCC-CTG
CCCGCAAAACATTGCTCCTAACTCCAC---------------------------------
-----------------------CGCCTATCCCAAAACCTATATGAACTAATGATAAT--
-------CC-C---ACCACCCTTTGCTGACTCTCTTTTCGGACTTAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTAGTCT
CTTCACTCGGACGC---------------
>LTR7B_chr7_2ltr_int_fr_1526__chr7_1265978812660220_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACA
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAATTGAAG------------
------------------------------------------------------------
----------ATCTACAAAAGAAGTGAAAATTAC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATGTGTTTCTGCCCCATC
CTAACTGAT-------CAGT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAA-T-----------------------------------
------------------------CT--------------CCCCCACCCTTAAGAAGGTT
CTT-------------------------------TGTAA--T------------------
---------------------------------------------------TCTTCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG
CCAGCAAAACATTGCTCCTGACTCCAC---------------------------------
-----------------------CGCCTATCCCAAAACCTATAAGAACTAATGATAAT--
-------CC-C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTAACCCAAAGCCTG--TTT--GGTGGTCT
CTTTACATGGACACGTGTGA--CA-----
>LTR7B_chr5_Sltr_fr_1361__chr5_6774847367748889_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGGC---------------------------------------------CTGCACT
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAG----CTGATGGC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTT-----------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------T-----------------------------------
------------------------CT--------------CCCCCACCCTTAAGAAGGTT
CTT-------------------------------TGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAAGGCACTTTGTGAGATCCACCCCCTG
CATGCAAAACATTGCTCCTAACTCCAC---------------------------------
-----------------------CGCCTATCCCAAAACCTATAAGAACTAATGATAAT--
-------CC-C---ACCACGC-TTGCTGACTCC--TTTCAGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCC-G--TTT--GGTGGTCT
CTTTACACAGACAC---------------
>LTR7B_chr6_Sltr_1445__chr6_1921254619213009_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACA
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----TTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTAGCTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAA-T-----------------------------------
------------------------CT--------------CCCCCACCCTTAAGAAGGTT
CTT-------------------------------TGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG
CCTGCAAAACATTACTCCTAACTCCAC---------------------------------
-----------------------CTCCTATCCCAAAACCTATAAGAACTAATGATAAT--
-------CC-C---ACCACACTTTGCTGACTCTGTTTTGGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTTACACGGACACGAGTGA--CA-----
>LTR7B_chr18_Sltr_644__chr18_5904418359044618__
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACA
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
GTT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAA-T-----------------------------------
------------------------CT--------------CCCCCACCCTTAAGAAGTTT
CTT-------------------------------TGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCACTG
CCCGCAAAACATTGCTCCTAACTCCAC---------------------------------
-----------------------CGCCTATACCAAAACCTATAAGAACTAATGAAAAG--
-------CC-C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTTGCACAAAGCCTG--TCT--GGTGGTCT
CTTCACACGGACACACGTGA--C------
>LTR7B_chr12_2ltr_int_fr_297__chr12_114055744114056173_+_
-GTCAGGCTTCTGAGCCCAAG-----------------------CTAAGCCATTATATCC
ACTGTGAC---------------------------------------------CTGCACA
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATA-C--------------------------
---------------------------------C----------TTAA----CGGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGCTTCTGCCCCACC
CTAACTGAT-------GAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAA-T-----------------------------------
------------------------CT--------------CCCC-------------GTT
TTT-------------------------------TGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG
CCTGCAAAACATTGCTCCTAACTCCGC---------------------------------
-----------------------CGCCTATCCCAAAACCTATAAGAACTAATGATAAT--
-------TC-C---ACCACCCTTTGCTGACTTTCTTTTTGGACTCAGCCCACCTTCACCC
AGGTG------AT--TAAAAA-CTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACTCAGATGCACGTGA--CA-----
>LTR7B_chr2_Sltr_851__chr2_3109399531094454_+_
-GTCAGGCCTCTGACCCCAAG-----------------------CTAAGCCATCACATGC
CCTGCGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTAACAGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAA-T-----------------------------------
------------------------CT--------------CCCCCATCCTTAAGAAGGTT
CTT-------------------------------TGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCATCCCCTG
CCCACAAAACATTGTTCCTAACTCCAC---------------------------------
-----------------------TGCCTATCCCAAAACCTATAAGAACTAATGATAAT--
-------CC-C---AC---CCTTTGCTGACTCTCTTTTTGGACTTAGTCCACCAGCACCC
AGGTG------AT--TAAAAAGCTTTATTGCTCACGCAAAGCCTG--TTT--GGTGGTCT
CTTCACTTGGACATGCATGA--CA-----
>LTR7B_chr11_Sltr_232__chr11_2354164923542112_+_
-GTCATGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------ATGCACC
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------G----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACAATTGTGATTTGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAA-T-----------------------------------
------------------------CT--------------CCCCCACTCTTAAGAAGGTT
CTT-------------------------------TGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTGGTGAAACCCACCCCCTG
CCTGCAAAACATTGCTCCTACTTCCAC---------------------------------
-----------------------CGCCTATCCCAAAACTTATAAGAACTAATGATAAT--
-------CC-C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCCGCCCACCTGCACCT
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACTCGGACATGCATGA--CA-----
>LTR7B_chr7_Sltr_1581__chr7_94678189468249_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACA
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAAGAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATACTTTGTAA-T-----------------------------------
------------------------CT--------------CCCCCACCCTTGAGAAGGTT
CTT-------------------------------TGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CCTTT---------GAGAAAGTACTTTGTGAGATCGACCCCCTG
CCAGCAAAACATTGCTCCTAACTCCAC---------------------------------
-----------------------TGCCTATCCCAAAACCTATAAGAACTGATGATAAT--
-------CC-C---ACCACCCTTTGCTGACTGTCTTTTCGGACTCAGCCTGCCTGCACC-
AGGTGA-----AA--TAAACAGCCTTGTTACTCACACAAAGGCTG--TTT--GGTTGTCT
CTTCACACAGACGTGCATGA--CA-----
>LTR7B_chr1_Sltr_18__chr1_14697691470201_+_
-GTCAGGCCTCTGGGCCCAAG-----------------------CTAAGCCATCATATCT
CCTGTGAC---------------------------------------------CTGCACT
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAATAAGTGAAAAGAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTAGCTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGCAA-T-----------------------------------
------------------------CT--------------CCCCCACCCTTAAGAAGGTT
CTT-------------------------------TGTCA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCATCCCCTG
CCCGCAAAACATTGTCCCTAACTCCAC---------------------------------
-----------------------CGCCTATCCCAAAACCTGTAAGAACTAGTGATAAT--
-------CC-C---ACCACCCTTTGCTGACTCTCTTTTTGAACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTTGTCT
CTTCACACAGATGCACATGA--CA-----
>LTR7B_chr1_Sltr_123__chr1_5870377958704237_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCTATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
CATATATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACCGAAG------------
------------------------------------------------------------
----------AGCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTATTTCT-----ACC
CCAATTGAT-------CAAC----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAA-T-----------------------------------
------------------------CT--------------CCCCCACCGTTAAGAAGGTT
CTT-------------------------------TATAA--T------------------
---------------------------------------------------CTCCCC---
-------------CA-CCCTT---------GAAAATGTACTTTGTGAGATCCAACCCCTG
CCCCCAAAACATTGCTCTTAACTCCAC---------------------------------
-----------------------CGCCTATCCCAAAACCTAAAAGAACTAATGATAAT--
-------CC-C---ACCACCCTTTGCTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC
AGATGA-----AA--TAAACAGCCTTGTTGCTGACACAAAGTCTG--TTT--GGTGGTCT
CTTCACATGGATGCA--------------
>LTR7B_chr18_Sltr_fr_646__chr18_6745552767455986__
TGTCAGGCCTCTGGGCCCAGG-----------------------CTAAGCCATCATATCC
CCAGTGAA---------------------------------------------TTGCACG
CATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGGCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAA-T-----------------------------------
------------------------AT--------------CCCCCACACTTAAGAAGGTT
CTT-------------------------------TATAA--T------------------
---------------------------------------------------CTCCCC---
-------------CA-CCCTT---------GAGAATGTACTTTCTGAGATCCACCCCCTG
CCCCCAAAACACTGCTCCTAACTCCAC---------------------------------
-----------------------TGCCTATCGCAAAACCTGTAAGAACTAATGTTGAT--
-------CC-C---ACCACCCTTTGCTGACTCT--TTTCGGACTCAGCCCGCCTGCACCC
AGATGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACGTGGA--CACATG----------
>LTR7B_chr17_Sltr_591__chr17_1951861119519043__
TGTCAGGCCTCTGAGCCTAAG-----------------------CTAAGCCATCATAACC
CCTGTGCC---------------------------------------------CTGCGTG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------AGCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA---------------------------------------------
------------------------------------------------------------
CTT-------------------------------TGTAA--T------------------
---------------------------------------------------CTCCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCTCCTG
CCCACGAAACATTGCTCCTAACTCTAC---------------------------------
-----------------------CGCCTATCCCAAAACTTATAAGAACTAATGATAAT--
-------CC-C---ACCGCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCTCCTGCACCC
AGGTGA-----AG--TAAACAGTCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CGTCACATGGATGC---------------
>LTR7B_chr4_Sltr_1222__chr4_2530982125310249__
TGTCAGGCCTCTGAGCCCAGG-----------------------CTAAGCCATCATATCC
CCTACGCC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TCGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAG---TGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATGTGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA---------------------------------------------
------------------------------------------------------------
CTT-------------------------------TGTAA--T------------------
---------------------------------------------------CTCCCC---
-------------CA-CCCTT---------GAGAAGGTACTTTGTGAGATCCACCCCCTG
CCCGCAACACAGTGCTCCTAACTCCAC---------------------------------
-----------------------CTCCTATCCCAAAACGTATAAGAACTAATAATAAT--
-------CC-----ACCACCCTTGGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGTTCACATAAAGCCTG--TTT--GGTGATCT
CTTCACATGGATGC---------------
>LTR7B_chr8_Sltr_1620__chr8_2295138022951843__
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGACATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CCGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTAACGGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTATTTTGTAA-T-----------------------------------
------------------------CT--------------CCTCAACCCTTAAGGAGTTT
CTT-------------------------------TGTAA--T------------------
---------------------------------------------------CTCCCC---
-------------CA-CCCTT---------GAAAACGTATTTTGTGAGATCCAACCCCTG
CCCCCAAAACATTGCTCCTAACTCCAC---------------------------------
-----------------------CGCCTATCCCAAAACCTATAAGAACTAATGATAAT--
-------CC-C---ACCACCCTTTGCTGACTCTCTTTTCGGATTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--CTT--GGTGGACT
CTTTACATGGATGC---------------
>LTR7B_chr8_Sltr_fr_1624__chr8_3800427938004703_+_
-GTCAGGCCTCTAAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACA
AATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------TCACCATTGTGAT--GTTTCTGCCCCACC
CTAACTCAT-------CACT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAA-T-----------------------------------
------------------------CT--------------CTGCCACCCTTA--------
------------------------------------------------------------
------------------------------------------------------------
-------------CA-CCCTT---------GAGCATGTACTTTGTGAGATCCATCCCCTG
CCCGCAAAACATTGCTCCTAACTCCAC---------------------------------
-----------------------TGCCTATCCCAAAACCTATAAGAACTAATGATAAT--
-------CA-C---ACCACCCTTTGCTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC
AGGTGA-----GA--TAAACAGCCTTGTTGCTCACACAAA----G--TCC--GGTGGTCT
CTTCACATGGATGCACATGA---------
>LTR7B_chr12_Sltr_fr_347__chr12_3195739531957882_+_
---CAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGCGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCATC
CTAACAGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTATTTTGTAA-T-----------------------------------
------------------------CT--------------CCCCCACCCTTAAGAAGGTT
CTT-------------------------------TGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------AAGAAGGTACTTTGTGAGATCCACCCCCTG
CCCGCAAAACATTGTTCCGGA---------------------------------------
------------------------GCCTCTCCCAAAACCTATAAGAATTAAAGATAAT--
-------CC-C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGTCTTGTTGCTCACGCAAAGCTTG--TTT--GGTGGTCT
CTTCACACGGATGCGCGTGA--CA-----
>LTR7B_chr20_Sltr_fr_933__chr20_5579590455796334__
TGTCAGGCCTCTGAGCCCAAA-----------------------CTAAGCCATCTTATCC
CCTGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCAACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAA-T-----------------------------------
------------------------CT--------------CCCCCACCCTTAAGAAGGTT
CTT-------------------------------GGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGATATCCACCCCCTG
CCCGCAAAACATTGCTCCTGACTCCAC---------------------------------
-----------------------CGCCCATCCCCAGACCTATAAGAACTAATGATAGT--
-------CC-C---ACCATCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCATGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGATGCGCGTG----------
>LTR7B_chr5_Sltr_1334__chr5_171008414171008846__
TGTCAGGCCTCTGAGCCCAAT-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCCTG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAATGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCCTTGTGATTTGTTTTTGCCCCACC
GTAACTGAT-------GAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAA-T-----------------------------------
------------------------CT--------------TCCCCACCCTTAAGAAGGTT
CTT-------------------------------TGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATTCACCCCCTA
CCCGCAAAACATTGCTCCTAACTCCAC---------------------------------
-----------------------TGCCTATCCCAAAACCTGTAAGAACTAATGATAAT--
-------CC-C---ACCATGCTTTGCTGACTCTCTTTTCAGACTCAGCCTGCCTGCACCC
AGGTGA-----AA--TAAACAGTCTTGTTGCTCACACAAAGCCTG--TTT--GGTGATCT
CTTCACACGGACGTCCGTGA--C------
>LTR7B_chrX_Sltr_1841__chrX_9070602490706487_+_
-GTCAGGTCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTAAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACAATTGCGATTTGTTTCTTCCCCACC
CTAACTGAT-------CAAC----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAA-T-----------------------------------
------------------------CTCCCTGACCCTTAAGCCCCCACCCTTAAGAAGGTT
CTT-------------------------------TGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCTCTG
CCTGCAAAACATTGCTCCTAACTCCAC---------------------------------
-----------------------GGACTATCCCAAATCCTGTAAGAACTAATGGTAAT--
-------CC-C---ACCACCCTTTGCTGACTCTCTTTTCAGACTCAGCCCACCTGCATCC
AGGTGA-----AA--TAAATAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGATGCATGTGA--CA-----
>LTR7B_chrY_Sltr_1895__chrY_42881844288647_+_
-GTCAGGTCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTAAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACAATTGCGATGTGTTTCTGCCCCATC
CTAACTGAT-------CAAC----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAA-T-----------------------------------
------------------------CTCCCTGACCCTTAAGCCCCCACCCTTAAGAAGGTT
CTT-------------------------------TGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCTCTG
CCTGCAAAACATTGCTCCTAACTCCAC---------------------------------
-----------------------GGACTATCCCAAATCCTGTAAGAACTAATGGTAAT--
-------CC-C---ACCACCCTTTGCTGACTCTCTTTTCAGACTCAGCCCATCTGCATCC
AGGTGA-----AA--TAAATAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGATGTGTGTGA--CA-----
>LTR7B_chr2_Sltr_fr_849__chr2_2721591527216376__
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCTATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGTCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAATGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATACTTTGTAA-T-----------------------------------
------------------------CTCCCTTACCCTTAAGCTCCCACGCTTAAGAAGGTT
CTT-------------------------------TGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTAAGATCCATCCCCTG
CCCGCAAAACAGCACTCCTAACTCCAC---------------------------------
-----------------------TGCCTACCCCAAAACCTGTAAGAACTAATGATAAT--
-------CC-C---ACCACCCTTTGCTGACTCTCTTTTTGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTTACACGGACACACGTG----------
>LTR7B_chr2_Sltr_fr_850__chr2_2848136728481798__
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCATCTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAA-T-----------------------------------
------------------------CTCCCCCACCCTTAAGTCCCCA--------------
------------------------------------------------------------
------------------------------------------------------------
----------------CCCTT---------GAGAATGTACTTTGTGAGATCCATCCCCTG
CCTGCAAAACAGCGCTCCTAACTCCAC---------------------------------
-----------------------TGCCTATCCCAAAACCTATAAGAACTAATGATAAT--
-------CC-C---ACCACTCTTTGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAATAGCCTTGTTGCTCACATAAAGCCTG--TTT--GGTGGTCT
CATCACACGGACACGCGTGA--C------
>LTR7B_chr12_Sltr_361__chr12_5785560557856035_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGACGAC
ATT---------------------------------------------------------
-------------------------------CCACCACTGTGATTGATTTCTGTCCCAAC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAA-T-----------------------------------
------------------------CTCCCGTACCCTTAAG--------------AAGGTT
CTT-------------------------------TGTAG--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAATGTA-TTTGAGAGATCCACCCCCTG
CCCGCAAAACAGTGCTCCTAACTCCAC---------------------------------
-----------------------CACCTATCCCAGAACCTATAAGAACTCATGATAAT--
-------CC-----ACCACCCTTTGCTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAATAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCATACGGACACGTGAGA--CA-----
>LTR7B_chr17_Sltr_612__chr17_7576721975767648__
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATAGCC
CCCGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAT------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCACTGTGATTTGTTCCTGCCCCAAC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAA-T-----------------------------------
------------------------CTCCCCCACCCTTAAG--------------AAGGTT
CTT-------------------------------TGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCATCCC-TG
CCCGCAAAACATTGCTCCTAACTCCAC---------------------------------
-----------------------CACCTATCCCAAAACCTATAAGAACTAATGATAAT--
-------CC-C---ACCACCCTTTGCTTACTCT--TTTCAGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
GTTCACACGGACACGCGTGA--C------
>LTR7B_chr10_Sltr_206__chr10_9630859096309019__
TGTCAGGCCTCTGAGCCCAGG-----------------------CCAGGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATACACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCTCACC
CTAACG-----------AAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTATTTTGTAA-T-----------------------------------
------------------------CTCCCCCACCCTTAAG--------------AAGGTT
CTT-------------------------------TGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CCTTT---------AAGAATGTACTTTGTGAGATCCGCCCCCTG
CCCACAAAACATTGCTCCTAACTCCAC---------------------------------
-----------------------CGCCTATCCCAAAACCTGTAAGAACTAATGATAAT--
-------CC-C---ACCACCCTTTGCTGACTCTCTTTTCAGACTCAGCTCGCTTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAATGCCTG--TTT--GGTGGTCT
CTTCACATGGACTCGAGTGA--C------
>LTR7B_chr8_Sltr_1605__chr8_122018613122019020__
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------CAGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------T----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCTCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTGCTTTGTAA-T-----------------------------------
------------------------CTCCCC-ACCCTTAAG--------------AAGGTT
CTT-------------------------------TGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-----------------------------------CCACCTCCTG
CCTGCAAAACATTGCTCCTAACTCCAC---------------------------------
-----------------------CGCCTATCCCAAAACCTATAAGAACTAACGATAAT--
-------CC-T---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCGCGCCTGCACCC
AGGTGA-----AA--GAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACACGCGTGA--C------
>LTR7B_chr16_Sltr_578__chr16_7570287375703304__
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCAGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAACAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTCGTTTCTGTCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAA-T-----------------------------------
------------------------CTCCCCCATCCTTAAG--------------AAGGTT
CTT-------------------------------TGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG
CCCACAAAACATTTCTCCTAA-TCCAC---------------------------------
-----------------------CGCCTATCCCAAAACCTATAAGAACTAACGATAAT--
-------CC-C---ACCACCCTTTGCTCACTCTCTTTTCAGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--CTT--GGTGGTCT
CTTCACACGGATGCGCATGA--C------
>LTR7B_chr3_2ltr_int_fr_997__chr3_128841595128842027__
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAA-T-----------------------------------
------------------------CTCCTCCACCCTTAAG--------------AAGATT
CTT-------------------------------TGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG
CCCCCAAAACATTGCTCCTAACTCTAC---------------------------------
-----------------------CGCCTATCCCAAAACCTGTAAGAACTAATGATAAT--
-------CC-C---ACCACCCTTTGCTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACGTGTTAGA--C------
>LTR7B_chr4_2ltr_int_fr_1235__chr4_5402007954020510_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAAC--------------------------
---------------------------------C----------TTAA----CTGATGAT
ACT---------------------------------------------------------
-------------------------------CCACCACTGTGATTTGTTTCTGCCCCACC
TTAACTGAT-------CAAC----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTGCTTTGTAA-T-----------------------------------
------------------------CGCCCCCACCCTTAAG--------------AAGGTT
CTT-------------------------------TGTAT--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTTAGATCCACCCCCTG
C-CACAAAACACCACTCCTAACTCCAC---------------------------------
-----------------------CGCCTATCCCAAAACCTGTAAGAACTAATGATAAT--
-------CC-C---ACCACCTTTTGCTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTCTTGCTCACACAAAGTTTG--TTT--GGTGGTCT
CTTCACACTGACGCGTGAGA--CA-----
>LTR7B_chr5_Sltr_1336__chr5_172813151172813547__
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTT-----------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------T-----------------------------------
------------------------CTCCCCCACCCTTAAG--------------AAGGTT
CTT-------------------------------TGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCACTG
CCCGCAAAACATTTCTCCTAACTCCAC---------------------------------
-----------------------CTCCTATCCCAAAACCTGTAAGAACGAATGATAAT--
-------CC-C---ACCACCCCTTGCTGACTCTCTTTTTGGACTCAGCCTGCCTGCACCC
AGGTGA-----T---TAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CGTCACACGGACGCGTGAGA--C------
>LTR7B_chrX_Sltr_1836__chrX_806258806732_+_
-GTCAGGCCTCTGAGCCCGAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
CATACATCCGGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAC------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATGGC--------------------------
---------------------------------C----------TTCA----CTGTTGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCAACC
GTAACTGAC-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTTCTTTGTAA-T-----------------------------------
------------------------CTCCCTAACCCTTAAG--------------AAGGTT
CTT-------------------------------TGCGA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CCTTT---------CAGAATGTACTTTCTGAGATCCATCCCCTG
TCCCCAAAGCATTGCTCCTAACTCCAC---------------------------------
-----------------------CGCCTGTCCCCAAACCTATAAGAACTAATGATAAT--
-------CC-C---ACCACCCTTTGCTGACTCTCTTTTTGGAAACAGCCCGCCTGCACCC
AGGTGA-----T---TAAAAAGCTGTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGTGAGA--CA-----
>LTR7B_chrY_Sltr_1916__chrY_806258806732_+_
-GTCAGGCCTCTGAGCCCGAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
CATACATCCGGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAC------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATGGC--------------------------
---------------------------------C----------TTCA----CTGTTGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCAACC
GTAACTGAC-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTTCTTTGTAA-T-----------------------------------
------------------------CTCCCTAACCCTTAAG--------------AAGGTT
CTT-------------------------------TGCGA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CCTTT---------CAGAATGTACTTTCTGAGATCCATCCCCTG
TCCCCAAAGCATTGCTCCTAACTCCAC---------------------------------
-----------------------CGCCTGTCCCCAAACCTATAAGAACTAATGATAAT--
-------CC-C---ACCACCCTTTGCTGACTCTCTTTTTGGAAACAGCCCGCCTGCACCC
AGGTGA-----T---TAAAAAGCTGTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGTGAGA--CA-----
>LTR7B_chr1_Sltr_fr_30__chr1_171398400171398798__
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAACTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCT--------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------------CCCCCACCCTTAAG--------------AAGGTT
CTT-------------------------------TGTAG--T------------------
---------------------------------------------------TCTTCC---
-------------CA-CCCTT---------GAGAATGTGCTTTGTGAGATCCACCCACTG
CCTGCAAAACATTGCTCCTAACTCCAC---------------------------------
-----------------------CGCCTATCCCCAAACCTATAAGAACTAATGATAAT--
-------CC-C---ACCACCCTTTGCTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TACACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGATGCGCATGA---------
>LTR7B_chrX_Sltr_fr_1787__chrX_2315701223157795_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAA---------------------------------------------CTGCGCG
TATACATC-AGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCT--------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------------CCCCCATCCTTAAG--------------AAGGTT
CTT-------------------------------TGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACTGCCTG
CCCGCAAAACATTGCTCCTAACTCCAC---------------------------------
-----------------------CGCCTATCCCAAAACCTGTAAGAACTAATGATAAT--
-------CC-C---ACCATCCTTTGCAGACTCTCTTCTCGGGCTCAGCCCGCCTGCACCC
AGGTGA-----AA--TACACAGCCTTATTGCTCACACAAAGCCTA--TTT--GGTGGTCT
CCTGACACAGACGCGCATGA--CA-----
>LTR7B_chr19_Sltr_696__chr19_5251648852516920_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCGTATCC
CCTGTCAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACGAAAGAAGTGAAAATACC--------------------------
---------------------------------C----------TTAA----GTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTATTTCTGCACCATC
TTGACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTGCTTTGTAA-T-----------------------------------
------------------------CTCCCCCACCCTTCAG--------------AAGGCT
CTT-------------------------------TGTAA--T------------------
---------------------------------------------------CCTCCC---
-------------CA-CCCTT---------GAGAATGGACTTGGTGAGATCCACCCCCTG
CCTGCAAAGCATTGCCCCTAACTCCAC---------------------------------
-----------------------CGCCTGTCCCAAAAGCTACAAGAACTAATGATAAT--
-------CC-C---ACCATACTTTGCTGACTCTCTTTTCACACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTCGTTGCTCACACAAAGCCTG--TTT--AGTGGTCT
CTTCACACGGACGAGTGTGA--CA-----
>LTR7B_chr19_Sltr_fr_699__chr19_5269931552699729__
-GTTAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TAGCCTGAAGCAACTG---------------
------------------------------------------------------------
------------------------TAAAAATATC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCAATATTGTGATTTGTTTCTGCCCTACC
CTGACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTGCTTTGTAA-T-----------------------------------
------------------------CTCCCCCACCCTTCAG--------------AAGGCT
CTT-------------------------------TGTAA--T------------------
---------------------------------------------------CCTCCC---
-------------CA-CCCTT---------GAGAATGGACTTGGTGAGATCCACCCCCTG
CCTGCAAAGCATTGCCCCTAACTCCAC---------------------------------
-----------------------CGCCTGTCCCAAAACCTATGAGAACTAATGATAAT--
-------CC-C---ACCACACTTTGCTGACTCTCTTTCCAGACTCAGCCCGGCTGCACCC
AGGTGA-----AA--TAAACAGCCTCGTTGCTCACACAAAGCGTG--TTT--GGTGGCCT
CTTCCCACAGACGTGCGTGA--C------
>LTR7B_chr19_Sltr_fr_701__chr19_5276053752760999__
-GTTAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TATATATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATGGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTGACTGAT-------CAAA----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAA-T-----------------------------------
------------------------CTCCCCCACCCTTCAG--------------AAGGTT
CTT-------------------------------TGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTGGTGAGATCCACCCCCTG
CCCGCAAAACATTGCTCCTAACTCCAC---------------------------------
-----------------------CGCCTGTCCCAAAACCTATGAGAACTAATGATAAT--
-------CC-C---ACCACACTTTGCTGACTCTCTTTCCAGACTCAGCCCGGCTGCACCC
AGGTGA-----AA--TAAACAGCCTCATTATTTAAACAAATTGTG--TTT--GGCGGTCT
CTTCACACGGACGTGCATTA--C------
>LTR7B_chr2_2ltr_int_fr_780__chr2_151309068151309482_+_
-GTAAGGCCTCTGAGCCCAAG-----------------------CTAAGCCACCATATCC
CCAGTGAC---------------------------------------------CTGCACA
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------TTCCACA---GAAGTGAAAATAG---------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCAC-
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------GCTTTGTAA-------------------------------------
-------------------------------------AAG--------------AAATTT
CTT-------------------------------TGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CCTTT---------GAGAATGTACTTTGTGAGATCCAACCCCTG
CTCCCAAAACATTGCTCTTAACTCCAC---------------------------------
-----------------------CACCTATCCCAAAACCTATAAGAACTAATGATAAT--
-------CC-C---ACCACCCT-TGCTGACTCTGTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACACATGAGA--CA-----
>LTR7B_chr3_Sltr_fr_990__chr3_125525402125525852__
TGTCAGACCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCAGTGAC---------------------------------------------CTGCACG
TATATATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACA---GAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTTTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------TTACTTTGTAA-T-----------------------------------
------------------------CTCCCCCACCCTTAAG--------------AAGTTT
CTT-------------------------------TGTAA--T------------------
---------------------------------------------------TCTCTC---
-------------CA-CCCTT---------GAGAATGCACTTTGTGAGACCCACCCCCTG
CCGCCAAAACATTGCTCTTAACTCCAC---------------------------------
-----------------------CACCTATCCCAAAACCTATAAGAACCAATGATAAT--
-------CC-C---ACCACCTTTTGCTGACTCT---TTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGTCTG--TTT--GGTGGTCT
CTTCACACAGATACGT-------------
>LTR7B_chr3_Sltr_974__chr3_105892416105892847__
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTG-T---------------------------------------------CTCCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACCGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATGGTGATTTGTTTCTGCCCCACT
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAA-T-----------------------------------
------------------------CTCCCCCACCCTTAAG--------------AAGGTT
CTT-------------------------------TGTAA--T------------------
---------------------------------------------------CTCCCC---
-------------AA-CCCTT---------CAAAATGTACTATGTGAGATCCACCCCCTG
CCCTCAAAACATTGCTCCTAATTCTAC---------------------------------
-----------------------CACCTATCCCCAAACCTATAAGAACTAATGATAAT--
-------CC-C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCCTGTTGCTCACACAAAGCCTG--TTT--GATGGTCT
CTTCACTCAGACGTGCGTGA--C------
>LTR7B_chrY_2ltr_int_fr_1915__chrY_75005907501024_+_
-GTCAGGCTTCTGAGCCCAGA-----------------------CTAAGCCATCATATCC
CCTGTGAA---------------------------------------------CTGCAAG
TATATATCCAGA------------------------------------------------
-----------------------------TGGACTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAAC--------------------------
---------------------------------C----------TTAA----CTGACGAT
ATT---------------------------------------------------------
-------------------------------CCATCATTGTGATTTGTTTCTGCCCCGCC
--AACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAG-C-----------------------------------
------------------------CTCCCCCACCCTTAAG--------------AAGGTT
GTT-------------------------------TGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CTCTT---------GAGAATGTACTTTGTGAGATCCACTCTCTG
CCTGCAAAACATGGCTCCTAACTCCAC---------------------------------
-----------------------CACCTATTCCAAAACCTATAAGAACTAATGACAAT--
-------CC-C---ACCACCCTTTGCTGACTCCTTTTTCGGACTCAGCCTGCCTGCACCC
AGGTAA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
TTTCAGATGGATGTGCATGT--CA-----
>LTR7B_chr14_2ltr_int_fr_467__chr14_5312874553129174_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTGAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCAGG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCTTGAAGCAACTGAAG------------
------------------------------------------------------------
----------AACCACAAAAG---------------------------------------
-------------------------------------------------------ATAAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATATGTTCCTGCCCCACC
CTAACTGAT-------CAACTGACCTTATGACAATACACC--------------------
------------------------CTCCCTGCCCTTGTGATAAT----------------
------------------------------------------------------------
------------GCACTTTGTGA-TAT---------------------------------
-------------------------TCCCCTGCTCTTAAC--------------AAGGTA
CTT-------------------------------TATAATAT------------------
---------------------------------------------------TCTCCC---
-------------TG-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCTGG
CCCA--------------------------------------------------------
-------------------------CCTATCCC-AAACCTATAAGAACTAATGATAAT--
-------CC-C---ACCACAATTTGCTGACTCCTTTTTCAGACTCAGCCAACCTGCACCC
AGGTGAATA--AA--C----AGCCTTGTTGCTCACACAAAGCCTG--TT---GGTGGTCT
CTTCAAATGGACGTGCATGA--CA-----
>LTR7B_chr21_2ltr_int_fr_937__chr21_1639773416398534__
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAGCTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAG---------------------------------------
-------------------------------------------------------ATGAC
ATT---------------------------------------------------------
-------------------------------CCACCACTGTGACCTGTTCCTGCCCCACC
CTAACTGAT-------CAATTGACC-TATGACAATACACC--------------------
------------------------CTCCCTGCCCTTGTGATAAT----------------
------------------------------------------------------------
------------GTACTTTGTGA-TAT---------------------------------
-------------------------TCCCCTGCCCTTAAG--------------AAGGTA
CTT-------------------------------TGTGATAT------------------
---------------------------------------------------TCCCCC---
-------------CG-CCCTT---------AAGAAGGTACTTTGTGAGATCCACCCCCTG
CCCACAACAAATTGCTCCTAACTCCAC---------------------------------
-----------------------CGCCTATCCC-AAACCTGTAAGAACTAATGATAAT--
-------CC-C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCAC-C
AGGTGATTA--AA--A----AGCTTTATTGCTCACACAAAGCCTG--TT---GGTGGTCT
CTTCACATGGATGTGCGCGA--C------
>LTR7B_chr21_Sltr_fr_941__chr21_1769638617697193__
TGTCAAGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TATACATCCAAA------------------------------------------------
-----------------------------TGTCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAG---------------------------------------
-------------------------------------------------------ATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGACCTGTTCCTGCCCCACC
CTAACTGAT-------CAATCGACC-TATGACAATACACC--------------------
------------------------CTCCCTGCCCTTGTGATAAT----------------
------------------------------------------------------------
------------GTACTTTCTGA-TAT---------------------------------
-------------------------TCCCCCGCCCTTAAG--------------AAGGTA
CTT-------------------------------TGTGATAT------------------
---------------------------------------------------TCTCCC---
-------------CG-CCCTT---------AAGAAGGTACTTTGTGAGATCCACCCCCTG
CCCACAACAAATTGCTCCTAACTCCAC---------------------------------
-----------------------CGCCTATCCC-AAACCTATAAGAACTAATGATAAT--
-------CC-C---ACCACCCTTTGCTGACTCCTTTTATGGACTCAGCCCGCCTGCAT-C
AGGTGAATA--AA--C----AGCCCTGTTGCTCACACAAAGCCTG--TT---GGTGGTGT
CTTCATACAGACACACATGA--C------
>LTR7B_chr21_Sltr_953__chr21_4357765143578119_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TATACACCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAG---------------------------------------
-------------------------------------------------------ATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATCTGTTCCTGCCCCACC
CTAACTGAT-------CAACTGACCTTATGACAATACACC--------------------
------------------------CTCCCTGCCCTTGCGATAAT----------------
------------------------------------------------------------
------------GGACTCTGTGA-TAT---------------------------------
-------------------------TCCCCTGCCCTTAAG--------------AAGGTA
CTT-------------------------------CATAATAT------------------
---------------------------------------------------TCTCCC---
-------------CG-CCCTT---------GAGAATGTACTTTGTGAGATCTACTCCCTG
CCCACAAAAAATTGCTTCTAACTCCAC---------------------------------
-----------------------CGCCTATCCC-AAACCTATAAGAACTAATGATAAT--
-------CC-C---ACCACCCTTTGCTGACTCCTTTTTTGGACTCGGCCTGCCTGCAC-C
------------------------TTGTTGCTCACACAAAGCCTG--TT---GGTGGTCT
CTTCACACGAACGTGCGTCA--CA-----
>LTR7B_chr1_Sltr_38__chr1_188567566188568019_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGACATCATA-CC
CCCGTGAC---------------------------------------------CTGCACG
TGTACCTCCAGA------------------------------------------------
-----------------------------TGACCTAAAGCAACTGAAG------------
------------------------------------------------------------
----------AACCACAAAAG---------------------------------------
-------------------------------------------------------ATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATCTGTTACTGCCCCACC
CTAACTGAT-------CAATTGACCTTATGACAATACACC--------------------
------------------------TTCCCCGCCCTTGTGATAAT----------------
------------------------------------------------------------
------------GTACTTTGTGA-TAT---------------------------------
-------------------------TCCCTTGCCCTTAAG--------------AAGATA
CTT-------------------------------TGTAATAT------------------
---------------------------------------------------TCT------
----------------CCCTT---------GAGAATGTACTTTTTGAGATCCACCCCCTG
CCCACAAAAAATTGCTCCTAACTCCAC---------------------------------
-----------------------CACCTATCCC-AAAACTATAAGAACTAATGATAAT--
-------CC-C---ACCACCCTTTGCTGACTCCTTTCTCGGACTCAGCCCACCTGCACCC
AGGTGAATA--AA--C----AGCCTTGTTGCTCACACAAAGCCTG--TT---GGTGGTCT
CTTCACACAGACGCGTGTGA--CA-----
>LTR7B_chr17_Sltr_615__chr17_7901089279011346_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACA
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------AACCACAAAAG---------------------------------------
-------------------------------------------------------ATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATCTGTTCCTGCCCCACC
CTCACTGAT-------CAATTGACCTTATGACAATACACC--------------------
------------------------CTCCCCACCCTTAGGATAAT----------------
------------------------------------------------------------
------------GTACTTCGTGA-TAT---------------------------------
-------------------------TCCCTCACCCTTAAG--------------AAGGTA
CTT-------------------------------TGTAATAT------------------
---------------------------------------------------TTTTCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG
CCCACAAAAAATTGCTCCTAACTCCAC---------------------------------
-----------------------CACCTATCCC-AAACCTATAAGAACTAATGATAAT--
-------CC-C---ACTACTCTTTGCTGACTCCTTTCTCGGACTCCGCCCACTTGCACCC
AGGTGAATA--AA--C----AGTCTTGTTGCTCACACAAGGCCCG---T---GGTGGTCT
CTTCACATGGACGCATGTGA--CA-----
>LTR7B_chr7_Sltr_1507__chr7_106567353106567841_+_
-GTCAGGACTCTGAGCCCAAG-----------------------CTAAGCCGTCATATCC
CCGGTGAC---------------------------------------------CTGCACA
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAG---------------------------------------
-------------------------------------------------------ATAAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATCTGTTCCTGCCCCACC
CTAACTGAT-------CAATTGACTTTGTGACAATACACC--------------------
------------------------CTCCCCGCCCTTGCGATAAC----------------
------------------------------------------------------------
------------GTACTTTGTGA-TAT---------------------------------
-------------------------TCCGCCGCCCTCGAG--------------AATGTA
CTT-------------------------------TGTAATAT------------------
---------------------------------------------------TCTTCC---
-------------CA-TCCTT---------GAGAATGTACTTTGTAAGATCCACCCCCTG
CCCAC-AAAAATTGCTCCTAACTCCAC---------------------------------
-----------------------CGCCTATCCC-AAACCTATAAGAACTAATGATAAT--
-------CC-C---ACCACCCTTTGCTGACTCCTTTTTCAGACTCAGCCCGCCTGCACCC
AGGTGAAAA--AA--C----AGCCTTGTTGCTCACACAAAGCCTG--TT---GATGGTCT
CTTCACACGGACGCATGTCA--CA-----
>LTR7B_chr16_Sltr_567__chr16_6221742062217874__
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCATG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGACG------------
------------------------------------------------------------
----------AACCACAAAAG---------------------------------------
-------------------------------------------------------ATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTATGATCTGTTCCTGCCCCACC
CTAACTGAT-------CAATTGACCTTATGACAATACACC--------------------
------------------------CTCCCCGCCCTTGCGATGAT----------------
------------------------------------------------------------
------------GTACTTTGTGA-TAT---------------------------------
-------------------------TCCCCCGCCCTTAAG--------------AAGGTA
TTT-------------------------------TGTAACAT------------------
---------------------------------------------------TCTCCC---
-------------TG-CCCTT---------GAAAATATACTTTGTGAGATCTACCCCCTA
CCCACAAAAA----------ACTCCAC---------------------------------
-----------------------CGCCTATCCC-AAACCTATAAGAACTAATGATAAT--
-------CC-C---ACCACCCTTTGCTGACCCCTTTTTCGGACTTAGCCCACCTGCACCC
AGGTGAATA--AA--C----AGCCTTGTTGCTCACACAAAGCCTG--TT---GGTGGTGT
CTTCACACGGACATGTGTGA--C------
>LTR7B_chr2_Sltr_fr_793__chr2_171497618171498448__
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCATG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------AACCACAGAAG---------------------------------------
-------------------------------------------------------ATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATCTGTTCCTGCCCCACC
CTAACTGAT-------CAATTGACTTTGTGACAATACACC--------------------
------------------------CTCCCTGCCCTTGC---GAT----------------
------------------------------------------------------------
------------ATTCTTTGTGA-TAT---------------------------------
-------------------------TCCCTCGCCCTTAAG--------------AAGGTA
CTT-------------------------------TGTAATAT------------------
---------------------------------------------------TCTCCC---
-------------TG-CCCTT---------GAGAATGTACTTTGTGAGATCCAGCCCCTG
CTCGCAAAAAATTGCTCCTAACTCCAC---------------------------------
-----------------------CGCCTATCCC-AAACCTATAAGAACCAATGATAAT--
-------CC-C---AACACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGAATA--AA--C----AGTCTTGTTGCTCACACAAAGCCTG--TT---GGTGGTCT
CTTCACACAGATGTGTGTGA--C------
>LTR7B_chr2_Sltr_842__chr2_231430429231430885_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------AACCACAGAAG---------------------------------------
-------------------------------------------------------ATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATCTGTTCCTGCCCCACC
CTAACTGAT-------CAATTGACCTTATGACAATACACC--------------------
------------------------CTCCCCGCCCTTGCGATCAT----------------
------------------------------------------------------------
------------GTACTTTGTAA-TAT---------------------------------
-------------------------TCCCCCACCTTTAAG--------------AAGGTA
CTT-------------------------------TGTGATAT------------------
---------------------------------------------------TTTCCC---
-------------TG-CCCTT---------GAGAATGTACTTTGTGAGATCCACCTCCTG
CCCACAAAAAATTGCTCCTAACTCCAC---------------------------------
-----------------------CACCTATCCC-AAACCTATAAGAACTAATGATAAT--
-------CC-C---ACCACCCTTTGCTGACTCCTTTTTTGGACTCAGCCCGCCTGCACCC
AGGTGAATA--AA--C----AGCCTTGTTGCTCACACAAAGCCTG--TT---GGTGGTCT
TTTCACATGGACACGCGTGA--CA-----
>LTR7B_chr22_Sltr_fr_961__chr22_2993978129940520_+_
-GTCAGGCCACTCTGCCCAGG-----------------------CTAAGCCATCATATCT
CCTGTGAC---------------------------------------------CTGCCCG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------AACCATGAAAG---------------------------------------
-------------------------------------------------------ATGAC
ATT---------------------------------------------------------
-------------------------------CAACCATTGTAATCTGTTCCTGCCCCACC
CTAACTGAT-------CAATTGACCTTATGACAATACACC--------------------
------------------------CTCCCCGCCCTTGCGATCAT----------------
------------------------------------------------------------
------------GTACTTTGTGA-TAT---------------------------------
-------------------------TTCCCTGCCCTTAAG--------------AAGGTA
CTT-------------------------------TGTAATAT------------------
---------------------------------------------------TCTCCC---
-------------TG-CGCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG
CCCACAAAAATTTGTTCCTAATTCCAC---------------------------------
-----------------------TGCCTATCCC-AAACCTGTAAGAACTAATGATAAT--
-------CC-T---ACCACCCTTTGCTGAATCTTTTCTTGGACTCAGCCCGCCTGCACCC
AGGTGAACA--AA--C----AGCCTTGTTGCTCACACAAAGCCTG--TT---GGTGGTCT
CTTCACACGGATGCGTGTGA--CA-----
>LTR7B_chrX_Sltr_fr_1785__chrX_16710321671750_+_
-----------------------------------------------------------C
CCTGTGAC---------------------------------------------CTGCATG
TATACATCTAGA------------------------------------------------
-----------------------------TGGCCTGGAGCAACTGAAG------------
------------------------------------------------------------
----------GACCACAGAAG---------------------------------------
-------------------------------------------------------ATGAC
ATT---------------------------------------------------------
-------------------------------CTACCATTGTGATCTGTTCCTGCTCCACC
CTTACTGAT-------CAGTTGACTTTGGGACAATACACC--------------------
------------------------CTCCCCGCCCTTGCAGTCGT----------------
------------------------------------------------------------
------------GTACTTTGTGA-TAT---------------------------------
-------------------------TCCCCTGCCCTTAAG--------------AAGGTA
CTT-------------------------------TGTAATAT------------------
---------------------------------------------------TCTCCC---
-------------CA-CCGTT---------GAGAATGTCCTTTGTGGCATCCACTCCCTG
CCTAGAAAAAATTGCTCCTAACTCCAC---------------------------------
-----------------------TGCCTATCCC-AAACCTATAAGAACTAATGATAAT--
-------CC-C---GCCACCCTTTGCTGACTCTTTTTTTGGACTCAGCCCG---------
------------------------------------------------------------
-----------------------------
>LTR7B_chrY_Sltr_fr_1880__chrY_16710321671750_+_
-----------------------------------------------------------C
CCTGTGAC---------------------------------------------CTGCATG
TATACATCTAGA------------------------------------------------
-----------------------------TGGCCTGGAGCAACTGAAG------------
------------------------------------------------------------
----------GACCACAGAAG---------------------------------------
-------------------------------------------------------ATGAC
ATT---------------------------------------------------------
-------------------------------CTACCATTGTGATCTGTTCCTGCTCCACC
CTTACTGAT-------CAGTTGACTTTGGGACAATACACC--------------------
------------------------CTCCCCGCCCTTGCAGTCGT----------------
------------------------------------------------------------
------------GTACTTTGTGA-TAT---------------------------------
-------------------------TCCCCTGCCCTTAAG--------------AAGGTA
CTT-------------------------------TGTAATAT------------------
---------------------------------------------------TCTCCC---
-------------CA-CCGTT---------GAGAATGTCCTTTGTGGCATCCACTCCCTG
CCTAGAAAAAATTGCTCCTAACTCCAC---------------------------------
-----------------------TGCCTATCCC-AAACCTATAAGAACTAATGATAAT--
-------CC-C---GCCACCCTTTGCTGACTCTTTTTTTGGACTCAGCCCG---------
------------------------------------------------------------
-----------------------------
>LTR7B_chr6_Sltr_1455__chr6_34689403469394_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCACATCT
CCTGTGAC---------------------------------------------CTGCACA
TATACATCCAGA------------------------------------------------
-----------------------------TGACCTGAAGCAAATGAAG------------
------------------------------------------------------------
----------AACCACAAAAA---------------------------------------
-------------------------------------------------------ATAAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATCTGTTCCTAC-CCACC
CTAACTGAT-------CAATTGACCTTATGACAATACCCC--------------------
------------------------CTCCCCGCCCTTGCAATAAT----------------
------------------------------------------------------------
------------ATACTTTGTCA-TAC---------------------------------
-------------------------TCCCCCGCCCTTAAG--------------AAGGTA
CTT-------------------------------TGTAATAT------------------
---------------------------------------------------TCTCCC---
-------------CG-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG
CCTATAAAAAATTGCTCCTAACTCCAC---------------------------------
-----------------------CGCCTATCCC-AAACCTATAAGAACTAATGATAAT--
-------CC-C---AGCACCCTTTGCTGACTCCTTTCTTGGACACAGCCTGCTTGCACCC
AGGTGAATA--AA--C----AGCCTTGTTGCTCACACAAAGCCTG--TT---GGTGGTCT
CTTCATACAGATGCGCGTGA--CA-----
>LTR7B_chr9_Sltr_fr_1684__chr9_1537980815380252__
TATCAGGCC--TCAGCCCAAG-----------------------CTAAGCTATCATATCC
CCTGTGAC---------------------------------------------CTGCACA
TATACATCTAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------AACCATAAAAG---------------------------------------
-------------------------------------------------------ATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGA--TGTTCCTGCCCCACC
CTAGCTGAT-------CAACTGACCTTATGACAATACACC--------------------
------------------------CTCCCCGCCCTTGCAATAAT----------------
------------------------------------------------------------
------------GTACTTTGTGA-TAT---------------------------------
-------------------------TCCCCGGCCCTTAAG--------------AAGGTA
CTT-------------------------------TGTAATAT------------------
---------------------------------------------------TCTCCC---
-------------TG-CCCTT---------GAGAATGTACGTTGTGAGATCCACCCCCTG
CCCATAAAAAATTGCTCCTAACTCCAC---------------------------------
-----------------------CGCCTATCCC-AAACCTGTAAGAACTAATGATAAT--
-------CC-C---ACCACCCTTTGCTGACTCTCTTTTTGGACTCAGCCCACCTGCACCC
AGGTG-TTA--AA--A----AGCTTTATTGCTCACACAAAGTCTG--TT---GGTGGTCT
CTTCATACAGATGCATG------------
>LTR7B_chr4_Sltr_1139__chr4_109639934109640372__
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACA
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------AACCACAAAAG---------------------------------------
-------------------------------------------------------ATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATCTGTTCTTGCCCCACC
CTAACTGAT-------CAACTGACCTTATGACAATACACC--------------------
------------------------CTCCC-GCCCTTGCGATAAT----------------
------------------------------------------------------------
------------GCACTTTGAGA-TAT---------------------------------
-------------------------TCCCCTGCCCTTAAG--------------AAGGTA
CTT-------------------------------TGTAATAT------------------
---------------------------------------------------TCTCCC---
-------------TG-CCCTT---------GAGAATGTACCTTGTGAGATCCACCCCCTG
CCCACAAA---CTGCTCCTAATTCTAC---------------------------------
-----------------------CGCCTATCCC-AAACCTATAAGAACTAACGATAAT--
-------CT-C---ACCACCCTTTTCTGACT-------------CAGCCCGCCTGCACCC
AGGTGAATA--AA--C----AGCCTTGTTACTCACACAAAGCCTG--TT---GGTGGTCT
CTTCATACAAACGCACGTGA--C------
>LTR7B_chr7_Sltr_1557__chr7_4339741043397863__
TGTCAGGCATCTGAGCCCAAG-----------------------CTAAGCCATCATATGC
CCTGTGAC---------------------------------------------CTGCACA
TATACATCCAGA------------------------------------------------
-----------------------------TGACCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------AACCACAAAAG---------------------------------------
-------------------------------------------------------ATGAC
ATT---------------------------------------------------------
-------------------------------CCACCACTGTGATCTGTTCCTGCCCCACT
CTAACTGAT-------CAATTGACCTTATGACAATACACC--------------------
------------------------CTCCCCACCCTTGCAATAAT----------------
------------------------------------------------------------
------------GTATTTTGTGA-TAC---------------------------------
-------------------------TCCCCCACCCTTAAG--------------AAGGTA
CTT-------------------------------TGTAATAT------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GA-AATGTACTTGGTGAGATCCACCCGCTG
CCCACAAAAAATTGCTCCTAACTCCAC---------------------------------
-----------------------CTCCTATCCC-AAACCTATAAGAACTAATGATAAT--
-------CC-C---ACCACCCTTTGCTGACTCTCTTTTCGTACTCAGCCCACCTGCACTC
AGGTGAATA--AA--C----AGCCATGTTACTCACACAAAGCCTG--TT---GGTGGTCT
CTTCACACAGACATGCATGA--C------
>LTR7B_chr1_Sltr_101__chr1_4095922040959662_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAGG------------
------------------------------------------------------------
----------AACCACAAAAG---------------------------------------
-------------------------------------------------------ATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATCTGTTCCTGCCCCACC
CTAACTGAT-------CGATTGACTTTATGACAACACATC--------------------
------------------------CTCC------------TAAT----------------
------------------------------------------------------------
------------GCACTTTGTGA-TAT---------------------------------
-------------------------TCCTCCGCCCTTAAG--------------AAGGTA
CTT-------------------------------TGTAATAT------------------
---------------------------------------------------TCTCCC---
-------------CG-CCCTT---------GAGAATATACTTTGTGAGATCCACCCCCTG
ACCACAAAAAATTGCTCCTAACTCCAC---------------------------------
-----------------------TGCCTATCCC-AAACTTATAAGAACTAATGATAAT--
-------CC-C---ACCACTCTTTGCTGACTCTTTTTTCAGACTCAGTCTGCCTGCACCC
AGGTGAATA--AA--C----AGCCCTGTTGCTCACACAAAGCCTG--TT---GGTGGTGT
CTTCACACAGACGCGCGTGA--CA-----
>LTR7B_chr9_Sltr_1681__chr9_129786513129786973_+_
-GTCGGGCCTCTGAGCCCAAG-----------------------CTAACCCATCATATCC
CCTGTGAC---------------------------------------------CGGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAG---------------------------------------
-------------------------------------------------------ACGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATCTGTTCCTGCCCCACC
CTAACTGAT-------CAACTGACCTTATGACAATACACG--------------------
------------------------CTCCCCGCCCTTGTGATAAT----------------
------------------------------------------------------------
------------GCACTTTGTGA-TAT---------------------------------
-------------------------TCCCCCGCCCTTAAG--------------AAGGTA
CTT-------------------------------TGTAATAT------------------
---------------------------------------------------TCTCCC---
-------------CG-CCCTT---------GAGAATGTACTTCCTAAGATCCACCCCCTG
CCCACAAAAAATTGCTCCTAACTCCAC---------------------------------
-----------------------TGCCTATCCC-AAACCCATAAGAACTAATGATAAC--
-------CC-C---ACCACCCTTTGCTGACTCTCTTTTCGGACT-AGCCCGCCTGCACCC
AGTTGAATA--AA--C----AGCCTTGTTGCTCACACAAAGCCTG--TT---AGTGGT--
CTTCACACAGAAGCGCGTGA--CA-----
>LTR7B_chr3_2ltr_int_fr_1074__chr3_3206746732067928_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACA
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAG---------------------------------------
-------------------------------------------------------ATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTAACTGAT-------CAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTACTTTGTAA-TCT---------------------------------
-------------------------TCCCCAACCCTTAAG--------------AAGTTT
CTT-------------------------------TGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAATGTACCTTGTGAGATCCACCCACTA
CCCACAAAACATTGCTCCTAACTCCAC---------------------------------
-----------------------CACCTATCCT-AAACGTATGAGAACTAATGATAAT--
-------CC-C---ACCACCCTTTGCTGACTCTCTTTTCAGACTCAGCCTGCCTGCACCC
ACATGAATA--AA--C----AGTCTTGTTGCTCACACAAAGCCTG--TTT--AGTGGTCT
CTTCACACAGATGCGTATGA--CA-----
>LTR7B_chr9_Sltr_fr_1685__chr9_1541932015420038__
TGTCAGGCCTCTGAGCCCAAG-----------------------CTTAGCCATTATATCC
CCTGTGAC---------------------------------------------CTGCACA
TATACATCTAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------AACCACAAAAG---------------------------------------
-------------------------------------------------------ATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATCTGTTCCTGCCCCACC
CTAACTGAT-------CAATTGACCGTATGACAATACACC--------------------
------------------------CTCCCCGCCCTTGCGATAAC----------------
------------------------------------------------------------
------------GTACTTTGTAA-T-----------------------------------
------------------------------------------------------------
--------------------------------------A--T------------------
---------------------------------------------------TCTCCC---
-------------TG-CCCTT---------GAGAATGTACGTTGTGAGATCCACCCCCTG
CCCACAAAAAATTGCTCCTAACTCCAC---------------------------------
-----------------------CGCTTATCCC-AAACGTATAAGAACTAATGATAAT--
-------CC-C---AGCACCCTTTGCTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC
A--------------------GCTTTATTGCTCACACAAAGCCTG--TTT--GGTAGTCT
CTTCACACTGACGCGTGTGA--C------
>LTR7B_chr1_Sltr_129__chr1_66999316700411_+_
-ATCAAGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTATGAC---------------------------------------------CTGCACA
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAG---------------------------------------
-------------------------------------------------------AAGAT
ATT---------------------------------------------------------
-------------------------------CCACCATGGTGATTTACTCCTGCCCCACC
CTAACTGGT-------CAATTGGCCTTATGACAATACACG--------------------
------------------------CTCCCCGCCCTTGTGATAAT----------------
------------------------------------------------------------
------------GTACTTTGTGA-TAT---------------------------------
-------------------------T---CCGCCCTTAAG--------------AAGGTA
CTT-------------------------------TGTAATAT------------------
---------------------------------------------------TCTCCC---
-------------CA-CTCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG
CCCACAAAAAATTGCTCCTAACTCCAC---------------------------------
-----------------------CGCCTATCCC-AAACCTATAAGAACTAATGATAAT--
-------CC-C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCATACGCACCC
AGGTGATTA--AA--A----AGGTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCGTGA--CA-----
>LTR7B_chr17_Sltr_603__chr17_6214730562147946_+_
-GTCAGGC--CTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCATG
TATACATCCAGA------------------------------------------------
-----------------------------TAGCCTGAAGCAACCGAAG------------
------------------------------------------------------------
----------ATCCACAAAAG---------------------------------------
-------------------------------------------------------ATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC
CTAACTGAT-------CAATTGACTTTGTAACAATACACC--------------------
------------------------CTACCC-CCCTTGCCATAAT----------------
------------------------------------------------------------
------------GTACTTTGTGA-TAT---------------------------------
-------------------------TCTCCCCCCCTTAAG--------------AAGATA
CTT-------------------------------TGTAATAT------------------
---------------------------------------------------TCCCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCC-CTG
CCCGCAAAACATTGCTCCTAACTCCAC---------------------------------
-----------------------GGCTTATCCC-AAACCTATAAGAACTAATGATAAT--
-------CC-C---ACCACCCTTTGCTGACTCTCTTTTCGGACACAGCCC-CCTGCACCC
TGGTGACTA--AA--A----AGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACGCACGTGA--CA-----
>LTR7B_chr2_Sltr_874__chr2_5722524957225700__
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCACATCC
CCTGTGAC---------------------------------------------CTGCACA
TATACATGCAGA------------------------------------------------
-----------------------------CGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------AACCACAAAAG---------------------------------------
--------------------------------------------------------TGAT
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATCTGTTCCTTCTCCACC
CTAACTGAT-------CAATTGAGTTTATGACAATATGCC--------------------
------------------------CTTCCCGCCCTTGCGATAAT----------------
------------------------------------------------------------
------------GTACTT-GTGA-TAT---------------------------------
-------------------------TCCCCCACCCTTAAG--------------AAGGTA
CTT-------------------------------TGTAATAT------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTGGGGAGATCCATCCACTG
CCCACAAAACATTGCTCCTAACTCCAC---------------------------------
-----------------------CGCCCATCCC-AAACCTATAAGATCTAATGATAAT--
-------CC-C---ACCACCTTTTGCTGACTCTCTTTTCAGACTCAGCCAGCCTGCACCC
AGGTGATTA--AA--A----AGCTTTATTACTCACACAAAGTCTG--TTT--GATGGTCT
CTTCACGCAGATGCACCTGA--C------
>LTR7B_chr5_Sltr_1335__chr5_171369080171369551_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCACATCC
CCTGTGAC---------------------------------------------CTGCAGG
TATACATCTAGA------------------------------------------------
-----------------------------TGGCCCGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAG---------------------------------------
--------------------------------------------------------TGCC
TTT---------------------------------------------------------
-------------------------------CCACCATTGTGCTTTGTTCCTGCCCCACC
CTCACTGAT-------CAGTTGACCTTATGACAATACACG--------------------
------------------------CTCCCCGCCCCTGCGATCAT----------------
------------------------------------------------------------
------------GTACTTTGTGA-TAT---------------------------------
-------------------------TC-CCCGCCCTTAAG--------------AAGGTA
CTT-------------------------------TGTAATAT------------------
---------------------------------------------------TCTTCC---
-------------CA-CCCTT---------GAGAATGGACTTTGTAAGATCCGCCCCCTG
CCCACAAAAAATTTCTCCTAACTCCAC---------------------------------
-----------------------TGCCTATCCC-AAACCTATAAGAACTAATGATAAT--
-------CC-C---ACCACCCTTTGCTGACTCTCTTTTCAAACTCAGCCTGCCTGCGCCC
AGGTGATTA--AA--A----AGCTTTATTGCTCACCCAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACGCGCGTGA--CA-----
>LTR7B_chr4_Sltr_1140__chr4_109784814109785262_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCT
CCTGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------AACCACAAAAG---------------------------------------
-------------------------------------------------------ATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATCTGTTCCTGCCCCACT
CTAACCGGT-------CAATTGACCTTATGACAATACACC--------------------
------------------------CTCCCCACCCTTGCGATAAT----------------
------------------------------------------------------------
------------GTACTTTGTGA-TAT---------------------------------
-------------------------TCCCCCGC----AAG--------------AAGCTA
CTT-------------------------------TGTAATAT------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG
CCCACAA---ATTGCTCCTAACTCCAC---------------------------------
-----------------------TGTCTGTCCC-AAACCTATAAGAACTAATGATAAT--
-------CT-C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGATTA--AA--A----AGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACACACGTGA--CA-----
>LTR7B_chr2_2ltr_int_867__chr2_4759106447591646__
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATAC
CCTGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCC---AAAGAAGTGAAAATAGC--------------------------
---------------------------------CAGTTCCTGCCTTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCTTGCCCCATC
CTAACTGAT-------CAATTGACTTTTTGACAACACACT--------------------
------------------------CTCCCCACCCTTGAGATAAT----------------
------------------------------------------------------------
------------GTACTTTGTGA-TAT---------------------------------
-------------------------TCCCCCACCCTTAAG--------------AAGGTA
CTT-------------------------------TGTAATAT------------------
---------------------------------------------------TCTCCC---
-------------CG-CCCTT---------AAGAATGTACTTTGTAAGATCCACACCCTG
CCTGAAAAACATTGCTCCTAATTCCAC---------------------------------
-----------------------CACCCATCCC-AAACCTATAAGAACTAATGATAAT--
-------CC-C---ACCACCTTTTGCTGACTCTCTTTTCGGACTTAGCCCGCCTGCACCC
AGGTGATTA--AA--A----AGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CCTCACACGGACGTGCATGA--C------
>LTR7B_chr6_Sltr_1425__chr6_151525284151525766_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGCAG------------
------------------------------------------------------------
----------AACCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------CAGGTCCTGCCTTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC
CTAACTGAT-------CAATTGACCTTATGACAATACACC--------------------
------------------------CTCCCCACCCTTGGGATAAT----------------
------------------------------------------------------------
------------GTACTTTGTGA-TAT---------------------------------
-------------------------TTCCCCACCCTTAAG--------------AAGGTA
CTT-------------------------------TGTAATAT------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTAAGATCCACCCCCTG
ACCACAAAA-ATTGCTCCTACCTCTAC---------------------------------
-----------------------CACCTATCCC-AAACCTTTAAGAACTAATGATAAT--
-------CC-C---ACCACCCTTTGCTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC
AGGTGATTA--AA--A----AGCTTTATTGCTCACACAAAGCCTG--TTG--GGTGGTCT
CTTCATACAGATGTGCATGA--CA-----
>LTR7B_chr15_2ltr_int_fr_502__chr15_4113129641131816_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCTATCGTATCC
CCTGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGAGAAAATAGC--------------------------
---------------------------------CAGTTCCTGCCTTAA----CTGATGAT
ATT---------------------------------------------------------
-------------------------------CCAACATTGTGATTTGTTCCTGCCCCACC
CTAACTGAT-------CAGTTGACTTTGTGACAATATACCCTCCCTGCCCTTGCGATAAT
GTACTTTGTGATATTCCCCTGCCC------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------TT---------GTGAATGTACTTTGTAAGATCCACCCCCTG
CCCACAAAAAATTGCTCCAACCTCCAC---------------------------------
-----------------------CGCCTATCCC-AAACCTATAAGGACTAATGATAAT--
-------CC-C---ACCCCCCTTTGCTGACTCTCTTTTCAGACTCAGCCCACCTGCACTC
ATTTGATTA--AA--C----AGCTTTGTTCCTCACACAAAGCCTG--TTT--GGTCGTCT
CTTCACACGGACTCATGTGA--CA-----
>LTR7B_chr19_2ltr_int_fr_690__chr19_4610961646109974__
TGTCAGGCCTCTGAGTCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CCGCATG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTAAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------CAGTTCCTGCCTTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC
CTAACTGAT-------CAATTGACTTTCTGACAATACACCCTCCCCACCCTTGTGATAAC
-TACTTTGTGATATTCCCCCACCC------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------TT---------GTGAATGTACTTTGTAATATTC--------
------------------------------------------------------------
-----------------------------TCCC-CCACCCTTAAGAA-------------
------------------------------------------------------------
----------------------------------------------------GGTACTTT
-----------------------------
>LTR7B_chr4_Sltr_1244__chr4_7591080775911327__
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATGC
CCTGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGAGAAAATAGC--------------------------
---------------------------------CAGTTCCTGCCTTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------TCACCATTGTGATTTGTTCCTGCCCCACC
CTAACTGAT-------CAATTGACTTTGTGACAAGACACCCTCCCCACCCTTGCAATAAT
GTACTTTGTGATATTCCCCCGCCC------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------TT---------GTGAATGTACTTTGTAAGATCCACTTCCTG
CCTGCAAAAAATTGCTCCGAACTCCAC---------------------------------
-----------------------CGTCTATCCC-AAACCTATAAGAACTAATGATAAT--
-------CC-T---ACCACCCTTTGCTGACTCCTTTTTTGGACTCAGCCCACGTGCACCC
AGGTGATTA--AA--A----AGCTTTATTGCTCACATGAAGCCTA--TTT--GGTGGTCT
CTTCACACAGATGTGTGTGA--C------
>LTR7B_chr2_Sltr_758__chr2_111999704112000247__
TGTCAGGACCCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TATACACCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACCGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------CAGTTCCTGCCTTAC----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC
CTAACTGAT-------CAATTGACTTTGTGACAATACACCCTCCCTGCCCTTGGGATAAT
GTACTTTGTGGTATTCCCCCACCC------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------TT---------GCGAATGTACTTTGCAAGATCCACCCCCTG
CTTACAAAAAATTGGTCCTAACTCCAC---------------------------------
-----------------------TGCCTATACC-AAACCTGTAAGAACTAATGATAAT--
-------TC-C---ACCATCCTTTGCTGACTCCTTTTTCGGACTCAGCCCACCTGCACCC
GGGTGATTA--AA--A----AGCTTTACTGCTCACACAAAACCTG--TT---GGTGGTCT
CTTCACATGGACACGTGTGA--C------
>LTR7B_chr12_Sltr_342__chr12_2490739624907943_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAATCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCAACAAAAG---TGAAAATAGC--------------------------
---------------------------------AGGTTCCTGCCTTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACTGTTGTGATTTGTTCCTGCCCCACC
CTAACCGAT-------CAATTGACTTTGTGACAATACACCCTCCCTGCCCTTGCGATAAT
GTACTTTGTGATATTTCCCCACCC------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------TT---------GTGAATGCACTTTGTAATATCCATCCCCTG
CCCACAAAAAATTGTTCCTA-CTCCAC---------------------------------
-----------------------CGCCTATCCC-AAACCTCTAAGAACTAATTATAAT--
-------CC-C---ACCACCCTTTGCTGACTCTCTTTTCAGACTCGGCCCGCCTGTACCC
AGGTGATTA--AA--A----AGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGAACACACATGA--CA-----
>LTR7B_chr17_Sltr_599__chr17_5360808653608641_+_
-GTCAGACCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACA
TATGCATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------TAGTTCCTGCCTTAA----CTGATGGC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATCTGTTCCTGCCCCACC
CTAACTGAT-------CGATTGACTTTGTGACAATACACCCTCCCCACCCTTGCGATAAT
GGACTTTGTGATATTCCCCCACCC------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------GTGAATGTACTTTGTAATATCCACCCCCTG
CCCACAAAAAGTTGCTCCTAACTCCAC---------------------------------
-----------------------CATCTGTCCA-AAACCTCTAGGAACTAATGATAAT--
-------CC-C---ACCACTCTTTGCTGACTCTCTTTTCGAACTCAGCCCTCCTGCACCC
AGGTGATTA--AA--A----AGCTTTATTGATCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACACACATGA--CA-----
>LTR7B_chr19_Sltr_fr_655__chr19_1434370614344527_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCAT-
-ATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------CAGTTCCT-CCTTAA----CTGATGAC
ATC---------------------------------------------------------
-------------------------------CCACCATCGTGATTTGTTCCTGCCCAACC
CTAACTGTT-------CAACTGACTTTGTGACAATATACCCTCCCCGCCCTTGCAATAAT
GTACTTTGTGATATTCCCCCGCCC------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------TT---------ATGAATGTACTTTGTATGATCCACCCCCTG
CCTGCAAAAAATTGCACCTAACTCCAC---------------------------------
-----------------------CACCTATCCC-AAACCTATAAGAACTAATGATAAT--
-------CC-C---ATCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AAA-----A--AA--A----AGCTTTATTGCTCACGCAAAGCCTG--TTT--GGTGGCCT
TTTCACACGGATGCACGTGA--CA-----
>LTR7B_chrX_Sltr_1784__chrX_1645637216456926__
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATTC
CCTGTGAC---------------------------------------------CTGCATG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATACACAAAAGAAGTGAAACTAGC--------------------------
---------------------------------CAGTTCCTGCCTTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC
CTAACTGAT-------CAATTGACTTTGTGACAATACACCCTCCCTGCCCTTGCAATAAT
GTATTTTGTGATATTCCCCTGCCC------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------TT---------GTGAATGTACTTTGTAAGATCCACCCCCTG
CCTGTAAAAAATTGCCCCTAACTCAAC---------------------------------
-----------------------CGCCTATCCC-AAACCTATAAGAACTAATGATAAT--
-------CC-C---ACTACCCTTTGCTGACTCTCTTTTCAGATTCAGCCCGACTGCACCC
AGGTGATTA--AA--A----AGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
TTTCACACGAACTCGTGTGA--C------
>LTR7B_chr1_Sltr_26__chr1_163233522163234037__
TGTCAGGCCCCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------CAGTTCCTGCCTTAG----CTG-TGA-
-TT---------------------------------------------------------
-------------------------------CCACCATTGTGATCTGTTCCTGCCCCACC
CTAACTGAT-------CAACTGACTTTGTGAAAATACACCCTCCCTGCCCTTGTGATAAT
GTACTTTGTGATAGTCCCCCGCCC------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------TT---------GTGAATGTACTTTGTAAGATCCACCCCCTG
CC--TCAAAAATTGCTCCTAACTCCAC---------------------------------
-----------------------CACCTATCCC-AAACCTATAAGAACTAATGATAAT--
-------CC-C---ACTACCCTTTGCTGACTCTCTTTTTGGACTCAGCCCATCTGCACCC
AGGTGATTA--A---A----AGCTTTATTGCTCACACAAAGCCTG--TTT--GATGGTCT
CTTCACATGGACACGCATGA--C------
>LTR7B_chr6_Sltr_1415__chr6_142104792142105342__
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCG
CCTGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCGGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------CAGTTCCTGCCTTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATCTGTTCCTGCCCCACC
CTAACTGAC-------CAACTGACTTTGTGAAAATACCCCCTCCCCGCCCTTTCGATAAT
GTACTTTGTGATATTCCCCCGCCC------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------TT---------GTTAATGTACTTTGTAAGATCCACCCCCTG
CC---CAAAAATTGCTCCTAACTCCAC---------------------------------
-----------------------TGCCTATCCC-AAACCTATAAGAACTAATGATAAT--
-------CC-C---ACCACCCTTTGCTGACTCTCTTTTTGGACTCAGCCCGCCTTCACCC
AGGTGATTA--AA--A----AGCTTTATTACTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATCCATGCATGTGA--C------
>LTR7B_chr14_Sltr_455__chr14_4445007844450708__
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGACATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGTAG------------
------------------------------------------------------------
----------GTCCACCAAAGAAGTGAAAATAGC--------------------------
---------------------------------CAGTTCCTGCCTTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCACTGTGATTTGTTCCTGCCCCACC
CTAACTG-T-------CAATTGACTTTGTGACAATACACCCTCCAGGCCCTTGTGATAAT
GTACTTTGTGATATTCCCCTGCCC------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------TT---------GTGAATGTACTTTATAAGATCCAGCCCCTG
CCCATAAAAAATTGCTCCTAACTCCAC---------------------------------
-----------------------CACCTATCCC-ATACCTATAAGAACTAACGATAAT--
-------CC-C---ACCACCCTTTGCTGACTTTCTTTTCGGACTCAGCCTGCCTGCAGCC
AGGTGATTA--AA--A----AGCTTTATTGCTCACACAAAGCCTA--TTT--GGTGGTCT
CTTCACATGGATGCGCATGA--C------
>LTR7B_chr2_Sltr_910__chr2_9804455398045106__
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACT
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------CAGGTCCTGCCTTAG----CTAATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC
CTAACTGAT-------CAATTGACTTTGTGACAATACACCCTCCCCGCCCTTGTGATAAT
GTACTTTGTGATATTCCCCCACCC------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------TT---------AAGAAGGTACTTTG---GATCTACCCCCTG
TCGCAAAAAAATTGCTCCTAACCCCAC---------------------------------
-----------------------CGCCTATCTC-AAACCTATAAGAACTAATGATAAT--
-------TC-C---ACCACCCTTTGCTGACTCTCTTTTCAGACTCAGCCCACCTGCACCC
AGGTGGTTA--AA--A----AGCTCTATTGCTCACACAAAGCCTG--TTT--AGTGGTCT
CTTCACATGGATGCACGTGA--C------
>LTR7B_chr7_Sltr_1514__chr7_119838679119839160__
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGTGTG
TATACATCTAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAGAAGAAGTGAAAATAGC--------------------------
---------------------------------CAGGTCCTGCCTTAA----CTGATGAC
CTT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCTTGCCCCACC
CTAACTGAC-------CAATTGACCTTTTGACAGTATACCCTCCCCGCCCTTGTGATAAT
GTACTTTGTGATATTCCCCTGCCC------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------TT---------AAGAAGGTACTTTG---GATC-ACCCCCTG
TCCATAAAAAATTGCTCCTAACTCCAC---------------------------------
-----------------------CGCCTATCTC-AAACCTATAAGAACTAATGATAAT--
-------CC-C---ACCACCGTTTGATGACTCTCTTTTTGGACTCAGCCCACCTGCACCC
AGGTGATTA--AA--A----A-CTTTATTGTTCACACAAAGCCTG--TTT--GGTGGTCT
CTTTACACGGACGCGTGTGA--C------
>LTR7B_chr4_Sltr_1249__chr4_7969642979696950_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAGAAGAAGTGAAAATAGC--------------------------
---------------------------------CAGTTCCTGCCTTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTAATTTGTTCCTGCCCCACC
CTAACTGAT-------CAATTGACTTTGTGACAATACACCCTCCCTACCCTTGCGGTAAT
GTAATTTGTGATATTCCCTCACCC------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------TT---------GTGAAGGTACTTTGTAAGATCCACCCCCTG
CCCACAAAAAATTGCTCCTAACTCCAC---------------------------------
-----------------------CGCCTATCCC-AAACCTGTAAGAACTAATGATAAT--
-------CC-C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACCTTCACCC
AGGTGATAA--AA--A----AGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGATGTGCATGA--CA-----
>LTR7B_chr1_Sltr_85__chr1_238276117238276672__
TGTCAGGCCTCTGAGCCCAAC-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGACCTGAAGCAACCGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------CAGTTCCTGCCTTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTATTCCTGCTCCACC
CTAACTGAT-------CAATTGACTTTGTGACAATACACCCTCCCCACCCTTGCAATAAT
GTACTTTGTGATATTCCTCTGCCC------------------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------------------------AG--------------AAGGTA
CTT-------------------------------TGTAATAT------------------
---------------------------------------------------TCCCCC---
-------------CA-C-CTT---------GAGAATGTGCTTTGTAAGATCCACCCCCTG
CCCACAAAAAATTGCTCCTAACTCCAC---------------------------------
-----------------------TACCTATCCC-AAACCTATAAGAACTAATGCTAAT--
-------CC-C---ACCACTCTTCGCTGACTCTCTTTTTGGATTCAGCCTACCTGCACCC
AGGTGATTA--AA--A----AGCTTTATTGCTCACACAAATCCTG--TTT--GGTGGTCT
CTTCACATGGACGCGTATGA--C------
>LTR7B_chr2_Sltr_797__chr2_179060642179061163__
TGTCAGGCCTCTGAGCCCGAG-----------------------CTAAGCCATCATA-CC
CCTGTGAC---------------------------------------------CTGCAGG
TATATATCCAGG------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAC------------
------------------------------------------------------------
----------ATCCAGAAAAGAAGTGAAAATAGC--------------------------
---------------------------------CAGTTCCCACCTTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTGCCCCATC
CTAACTGAT-------CAATTGACTTTGTGACAATACACCCTCCCCGCCCTTGGGATAAT
GTAGTTTGTGATATTCCCCCACCC------------------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------------------------AG--------------AAGGTA
CTT-------------------------------TGTAATAT------------------
---------------------------------------------------TCACCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTAAGATCCACCACCTG
CCTGCAAAAAATTGCTCCTAACTCCAC---------------------------------
-----------------------CACCTATCCC-AAACCTATAAGAACTAATGATAAT--
-------CC-C---ACCACTCTTTGCTGACTCTCTTTTTGGACTCAGTCCACCTGCACCC
AGGTGATTA--AA--A----AGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGATGTGCTTGA--C------
>LTR7B_chr1_Sltr_88__chr1_246418826246419358_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------GTAAGCCATCATATCC
CCCGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------AACTACAAAACAACTGAAAATAGC--------------------------
---------------------------------CAGTTCCTGCCTTAA----CCGATGAC
ATT---------------------------------------------------------
-------------------------------GCACCATTGTGATTTGTTCCCTCCCCACC
CTAAGTGAT-------CAATTGACTTTGTGACAATACCCCCTCCCCGCCCTTGCGATAAT
GGACTTTGTGATATTCCTCCGCCC------------------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------------------------AG--------------AATGTA
CTT-------------------------------TGTAATAT------------------
---------------------------------------------------CCTCCC---
-------------CA-CACTT---------GAGAATGTACTTTGTAAGATCCACCCCCCA
CTAGC-AAAAATTGCTCCTAACTCCAC---------------------------------
-----------------------CGCCTATCTC-AAACCTATAAGAACTAATGATAAT--
-------CC-C---ACCACCCTTTGCTGACTCTCTTTTCAGACTTAGCCCGCCTGCACCC
AGGTGATTA--AA--A----AGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACACGTGTGA--CA-----
>LTR7B_chr11_Sltr_234__chr11_2493371224934276__
TGTCAGGCCTCCGAGCCCAAG-----------------------CTAAGCCATCATATCC
CTTGTGAC---------------------------------------------CTGCATG
TATATATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAAATGAAG------------
------------------------------------------------------------
----------ATCCAGAAAAGAAGTGAAAATAGC--------------------------
---------------------------------CAGTTCCTGCTTTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC
CTAACTGAT-------CAGCTGACTTTGTGACAATACACCTTCCCTGCCCTTGCGATAAT
GTACTTTGTGATATTCCCCTACCCCTCCCCATCCTTGAGA--AG----------------
------------------------------------------------------------
------------GTACATTGTAA-TAT---------------------------------
------------------------CTCCCCCCACCTTAAG--------------AAGGTA
CTT-------------------------------TGTAATAT------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAAAATGTATTTTGTAAGATCCACCCCCTG
CCCACAGAAAATTGCTCCTAACTCCAC---------------------------------
-----------------------CGCCCATCCC-AAACCTATAAGAACTAATGATAAT--
-------CC-C---ACCACCCTTTGATGACTCTCTTTTCGGACTCAACCCTCCTGCACCC
AGGTAATTA--AA--A----AGATTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCC
CTTCACACAGATGCGCATGA--C------
>LTR7B_chr20_Sltr_921__chr20_2351424523514797_+_
-GTGAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCTCG
TATACATTCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------CAGTTCCTGCCTTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CTACCATTGTGATTTGTTCCTGCCCCACC
CTAACTGAT-------CAATTGACTTTGTGACAACACACTCTCCCTGCCCTTGCGATAAT
GTACTTTGCAATATTCCGCCACCCTTCCCCACCCTTGAGA--AG----------------
------------------------------------------------------------
------------GTACTTTGTAA-TAT---------------------------------
------------------------CTCCCCCCACCTTAAG--------------AAGGTA
CTT-------------------------------TGTAATAT------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAATGTATTTTGTAAGATCCACCCCCTG
TCCACAAAAAATTGCTCCTAACTCCAC---------------------------------
-----------------------TGCCTATCCC-AAACCTATGAGAACTAATGATAAT--
-------CC-C---ACCACCCTTTGCCGACTCT--TTTCAGACTCAGCCCGCCTGCACCC
AGGTGATTA--AA--A----AGCTTTATTGCTCACATAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGTGTGA--CA-----
>LTR7B_chr13_Sltr_fr_421__chr13_5740528157405799_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCTCTCATAACC
CCTGTGAC---------------------------------------------CTGCACA
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGGAGCAACTGAAG------------
------------------------------------------------------------
----------AACCACAAAA----------------------------------------
------------------------------------------------------GATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATCTGTTCCTGCCCCACC
CTAACTGAT-------CAATGGACTTTGTGACAATAAACCCTCGCTGCCCTTGCGATAAT
GTGCTTTGTGTTATTCCCCTGCCCCTCCCCACCCTTGAGA--AG----------------
------------------------------------------------------------
------------GTACTTTGTAA-TAT---------------------------------
------------------------CTCCCCCACCCTT-----------------AAGGTA
CTT-------------------------------TGCAATAT------------------
---------------------------------------------------TCTCCC---
-------------TG-CCCTT---------GAGAATGTATTTTGTGAGATCCACCCCCTG
CCCGCAAAGAATTTCTCCTAACTCCAT---------------------------------
-----------------------TGCCTATCCC-AAACCTGTAAGAACTAATGATAAT--
-------CC-C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
GGGTGACTA--AA--A----AGCTTTATTGCTTACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGTGTGTAA---------
>LTR7B_chrX_2ltr_int_fr_1827__chrX_7126438071264926_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TATACATCCATA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------CAATTCCTGCCTTAA----CTGATGAC
ATC---------------------------------------------------------
-------------------------------CCACCAT----------TCCTGCCCCACC
CTAACTAAT-------CAATTGACTTTGTGACAATACTACCTCCCCGCCCTTGTGATAAT
GTACTTTGTGATATTCCCCCACCCCTCCCCACCCTTGAGA--AG----------------
------------------------------------------------------------
------------GTACTTTGTAA-TAT---------------------------------
------------------------CTCCCCTGCCCTTAAG--------------AAGGTA
CTT-------------------------------TGTAATAT------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAATATACTTTGTAAGATCCACCCCCTA
CCTGCAAAAAATTGCTCCTAACTCCAC---------------------------------
-----------------------TGCCTATCCC-AAACCTATAAGAACTAATGATAAT--
-------CC-C---ACCACCCTTTGCTGACTCCTTTTTCCGACTCAGCCCACCTGCACCC
AGGTGAATA--AA--C----AGCCTTGTTGCTCACACAAAGCGTG---TT--GCTGGTCT
CTTCACATGGACGTGCGTGA--CA-----
>LTR7B_chr4_Sltr_1197__chr4_168976362168976949__
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCATG
TATACATCTAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAAGTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------CAGTTCCTGCCTTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC
CTAACTGAT-------AAATTGACTTTGTGACAATACACCCTCCCCGCCCTTGCGATAAT
ATACTTTGCGATATTCCCCCACCCCTCCACACCTTTGAGA--AG----------------
------------------------------------------------------------
------------GTACTTTGTAA-TAT---------------------------------
------------------------CTTCCCTGCCCTTAAG--------------AAGGTA
ATT-------------------------------TGTAATAT------------------
---------------------------------------------------TCTTCC---
-------------CA-CCCTT---------GAGAATGTACT--ACAAGATCCACCCCCTG
CCTACAAAAAATTGCTCCTAACTCCAC---------------------------------
-----------------------CTCCTATCCC-AAATCTATAAGAACTAATGATAAT--
-------CC-C---ACCACCCTTTGCTGACTCCTTTTTCAGACTCAGCCCACCTGCACGC
AGGTGAATA--AA--C----AGCCTTGTTGCTCACACAAAGCCTG---TT--GGTGG-CT
CTTCACATGGACGTGCATGA--C------
>LTR7B_chr6_Sltr_1481__chr6_8098114280981689_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------TGGTATG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGT--------------------------
---------------------------------CAGTTCCTGCCTTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCAT----------TCCCATCCCACC
CTAACTGAT-------CAATTGACTTTGTGACAATACACCCTCCATGCCCTTGCAATAAT
GTACTTTGTGATATTCCCCTGCCCCTCCCCACCCTTGAGA--AG----------------
------------------------------------------------------------
------------GTACTTTGTAA-TAT---------------------------------
------------------------CTCCCCGGCCCTTAAG--------------AAGGTA
CTT-------------------------------TGTAATAT------------------
---------------------------------------------------TCTCTC---
-------------CA-TCCTT---------GAAAATGTACTTTGTAAGATCCACTCCCTG
CCTGCAAAAAATTGCTCCTAATTCCAC---------------------------------
-----------------------TGCCTATCCC-AAACCTATAAGAACTAATGATAAT--
-------CC-C---ACCACCCTTTGCTGACTCCTTTTTTGGACTCAGCCCGCCTGCACCA
AGGTGAATA--AA--C----AGCCTTGTTGCTCACACAAAGTCTG---TT--GGTGGTCT
CTTCACACGGACACATGTGA--CA-----
>LTR7B_chrX_Sltr_1740__chrX_109576056109576612_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCAAG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------CAATTCCTGCCTTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC
CTAACTGAT-------CAGTTGACTTTGTGACAATACACCTTCCCCGCCCTTGCGATAAT
GTACTTTGTGACATTCCCCCGCCCCTCCCCACCCTTGAGA--AG----------------
------------------------------------------------------------
------------GTACTTTGTAA-TAT---------------------------------
------------------------CTCTCCCGCCCTTAAG--------------AAGGTA
CTT-------------------------------TGTAATAT------------------
---------------------------------------------------TCTCCT---
-------------CA-CCCTT---------GAGAATGTACTCTGTAAGATCCACCCCCTG
CCAGCAAAAAATTGCTCCTAACTCCAC---------------------------------
-----------------------TGCCTATCCC-AAACCTATAAGAACTAATGATAAT--
-------CC-C---ACCACCCTTTGCTGACTCCTTTTTCAGACTCAGCCCACCTGCACCC
AGGTGAATA--AA--C----AGCCTTGTTGCTCACACAAAATCTG---TT--GGTGGTCT
CTTCACACGGACACACGTGA--CA-----
>LTR7B_chr19_2ltr_int_fr_712__chr19_58519405852530_+_
---CAGGCCTCTGAGCCCAAG-----------------------CTAAGCCACCATCTCC
CCTGTGAC---------------------------------------------CTGCACG
TGTACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCAGAAAAAAAGTGAAAATAGC--------------------------
---------------------------------CAGTTCCTGCCTTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGCGATTTGTTCCTGCCTCACC
CTAACTGAT-------CAATTGACTTTGTGACAATACACCACC----CCCTTGCAATAAT
GTACTTTGTGATATTCCCCCGCCCCTCGTCACCCTTGAGA--AG----------------
------------------------------------------------------------
------------GTGCTTTGTAA-TAT---------------------------------
------------------------CTCCCCTGCCCTTAAG--------------AAGATA
CTT-------------------------------TGTAATAT------------------
---------------------------------------------------TCTCCT---
-------------CA-CCCTT---------GAGAATGTACTTTGTAAGATCTACCACCTG
CCCGCAAAAAATTGCTCCTAACTCCAC---------------------------------
-----------------------TGCCTATCCC-AAACCTATAAGAACTAATGATAAT--
-------CC-C---ACCACCCTTTGCTAACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGATTA--AA--A----AGCTTTATTGCTCACACGAAGCCTG--TTT--GGTAGTCT
CTTCACACGGGCGAGTGTGA--CA-----
>LTR7B_chr3_Sltr_983__chr3_112784023112784506__
TGTCAGGTCTTTGAGCCCAAG-----------------------CTAAGCCA---TATCC
CCCGTGAC---------------------------------------------CTTCACA
TATACATCCA--------------------------------------------------
-----------------------------TGGCCTGAAGCAGCTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------CAGGTCCTGCCTTAA----CTTATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTAACTGAT-------CAATTGACTTTGTGACAATATACCG-------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------------CCCCCACCCTTAAG--------------AACGTA
CTT-------------------------------CGTAAGAT------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTAAGATATACCCCCTG
CCGGCAAAAAATCGCTCCTAACTCCAC---------------------------------
-----------------------TGCCTATCCC-AAACCTATAAGAACTAATGATAAT--
-------CC-C---ACCACCCTTTGCTAACTCTCTTTTCAGACTCAGCCCGCCTGCACCC
ATGTGATTA--AA--A----AGTTTTATTGCTCGCACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGATGTGCATGA--C------
>LTR7B_chr17_2ltr_int_fr_607__chr17_6879760568798097__
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACA
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATTGC--------------------------
---------------------------------CAGTTCCTGCCTTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCAGCATTGTGATTTGTTCCTGCCCCACT
CTAACTGAT-------CAATTAACTTTGTGACAATACACC--------------------
------------------------CTCCCCACCCTTGAGA--AG----------------
------------------------------------------------------------
------------GCACTTTGTAA-TAT---------------------------------
------------------------CTACCCCGCCCTTAAG--------------AAGGTA
CTT-------------------------------TGTAATAT------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTAAGATCCACCCGCTG
CCCACAAAAAATTGCTCCTAACTCCAC---------------------------------
-----------------------TGCCTATCCC-AAACCTATAAGAACTAATGATAAT--
-------CC-C---ACCACCCTTTGCTGACACTCTTTTTGGACTCCGGCTGCCTGCACCC
AGGTGATTA--AA--A----AGCTTTATTGCTCACACAAAGCCTG--TTT--GGTCGTCT
CTTCACACGGACACACATGA--C------
>LTR7B_chr2_Sltr_904__chr2_8565764185658146__
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGCC---------------------------------------------CTGCACG
TATACACCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------CAGTTCCTGCCTTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC
CTAACTGAT-------CAATTGACCTTGTGACAATACACC--------------------
------------------------TTCCCCACCCTTGAGA--AG----------------
------------------------------------------------------------
------------GTGCTTTGTAA-TAT---------------------------------
------------------------CTCCCCCACCCTTAAG--------------AAGGTA
TTT-------------------------------TGTAATAT------------------
---------------------------------------------------TCTCTC---
-------------CG-CCATT---------GAGAATGTGCTTTGTAAGATCCACCCCCTG
CCCACA-AAAATTGCTCCTAACTCCAC---------------------------------
-----------------------CGCCTATCCC-AAACCTACAAGAACTAATGATAAT--
-------CC-C---ACCACCCTTTGCTGACTCT--TTTTGGACTCAGCCCACCTGCACCC
AGGTGATTA--AA--A----AGCTTTATTGTTCACACAAAGCCTG--TTT--GGTAGTCT
CTTCACAGGGAAGCATGTGA--C------
>LTR7B_chr5_Sltr_1314__chr5_138834780138835263__
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTCAC---------------------------------------------CTGCATG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGCGAAAATAGC--------------------------
---------------------------------CAGTTCCTGCCTTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCACTGCGATTTGTTCCTGCCCCACC
CTAACTGAT-------AAATTGACTTTGTGACAATACACC--------------------
------------------------CTCCCCACCCTTGAGA--AA----------------
------------------------------------------------------------
------------GTACTTTGTAA-TAT---------------------------------
------------------------CTCCCCTGCCCTTAAG--------------AAGGTA
CTC-------------------------------TGCAATAT------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GACAATGTACTTCATAAGATCCACCCCCTG
CCCACA-AAAATTGCTCCTAACTCCAC---------------------------------
-----------------------TGCCTATCCC-AAACCTATAAGAACTAATGATAAT--
-------CC-C---GCCACCCTTCGCTGACTCT--TTTTGGACTCAGCCCGCCCGCACCC
AGGTGATTA--AA--A----AGCTTTACTGCTCTCAAAAAGCCTG--TTT--GGCAGTCT
CTTCACACAGAGGCAAGTGA--C------
>LTR7B_chr6_Sltr_1454__chr6_3387973633880220_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------TTAAGCCATCATATGC
CCTGTGAT---------------------------------------------TTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------CTGTTACCGCCTTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCACTGTGATTTGTTCCTGCCCCACC
CTAACTGAT-------CAATTGACTTTGTGACAATACACC--------------------
------------------------CTCCCCACCCTTGAGA--AG----------------
------------------------------------------------------------
------------GTACTTTGTAA-TAT---------------------------------
------------------------CTCCCCGACCCTTAGG--------------AAGGTG
CTT-------------------------------GGTAATAT------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAATATACTTTGTAAGATCCACCCCCTG
CCCACA-AAAATTGCTCCTAACTCCAC---------------------------------
-----------------------CACCTATTCC-AAACCTAGAAGAACTAATGAAAAT--
-------CC-C---ATCATCCTTTGCTGACTCT--TTTCGGACTCAGCCCAACTGCACCC
AGGTGATTA--AA--A----AGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACAGGGAGGCGCATGA--CA-----
>LTR7B_chr4_Sltr_1246__chr4_7756688577567370_+_
-GTCGGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACC
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATTCACAAATGAAGTGAAAATAGC--------------------------
---------------------------------CAGTTCCTGCCTTAA----CTGATGAC
ATC---------------------------------------------------------
-------------------------------CCACCATTGCGATTTGTTCCTGCCTCACC
CTAACTGAT-------CAATTGACTTTGTGACAATACACC--------------------
------------------------CTCTCCACCCTTGAGA--AG----------------
------------------------------------------------------------
------------TTACTTTGTAA-AAT---------------------------------
------------------------CTCCCCA--CCTCAAG--------------AAGGTA
CTT-------------------------------TGTAATAT------------------
---------------------------------------------------CCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTAAGATCCACCCCCTG
CCCACAAAAAATTGCTCCTAACTCCAC---------------------------------
-----------------------CGCCTATCCC-AAACCTATAAGAACTAATGATAAT--
-------CC-C---ACCACCCTTTGCTGACTCTCTTTTCAGACTCAGCCCACTTGCACCC
AGGTGATTA--AA--A----AGTTTTACTGCTCACACAATGCCTA--TTT--GGTGGTCT
CTTCACATGGACGCGCACAA--CA-----
>LTR7B_chr6_Sltr_1429__chr6_156975790156976275__
TGTCAGGCCTCTGAGCCCAAG-----------------------TTAAGCCGTCATATCC
CCTGTGAC---------------------------------------------CTGCACA
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATTCACAAA---AGTGAAAATAGC--------------------------
---------------------------------CAGTTCCTGCCTTAA----CTGATGCC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC
CTGACTGAT-------CAATTGACTTTGTGACAATACACC--------------------
------------------------CCCTCCGCCCTTGCGT--AT----------------
------------------------------------------------------------
------------GTACTTTATGA-TAT---------------------------------
------------------------CCCCCGT--CCTTGTG--------------AATGTA
CTT-------------------------------TGTAACAC------------------
---------------------------------------------------CCGCTC---
-------------CA-CCCTT---------GAGAAGGTACTTTGTAAGATCCTCCCCCTG
CCCACAAAAAACTGCTCCCAACTCCAC---------------------------------
-----------------------CGCCTATCAC-AAACCTATAAGAACTAATGATAAT--
-------CC-C---ATCACCCTTTGCTGACTCT----TCGGACTCAGCCCGCCTGCACCC
AGGTGATAA--AA--A----AGCTTTACTGTTCACGTAAAGCTTG--CCT--GGTGGTCT
CTTCACATGGACGCTCGTGA--C------
>LTR7B_chr8_Sltr_1632__chr8_6351125763511736_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCTATCGTATCC
CC-GTGAC---------------------------------------------CTGCTTG
TATACACCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------CAGGTCCTGCCTTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTTTGATTTGTTCCTGCCCCACC
CTAATTGAT-------CAATTGACTTTCTGACAATACACC--------------------
------------------------CTCCCCACCCTT-AAA--AG----------------
------------------------------------------------------------
------------GTACTTTGTAA-TAT---------------------------------
------------------------CTCCCCCACCCTTAAG--------------AAGATA
CTT-------------------------------TGTAATAT------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTAAGATCTAC-CCCTG
CCCACAAAAAATTGCTCCTAACTCCAC---------------------------------
-----------------------CACCTATCCC-AAACCTATAGGAACTAATGATAAT--
-------TC-C---ACCATCCTTTGCTGACTCCTTTTTTGGACTCAGCCCACCTACACCC
AGGTGA-----AA--T----AGCCTTGCTGCTCACACAAAGCCTG--TT---GGTGGTCT
CTTCACATGGACGTGCATGA--CA-----
>LTR7B_chr13_Sltr_fr_416__chr13_5431103054311436__
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCAGTGAC---------------------------------------------CCGCACG
TATATATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACA---GAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGGTTGGTTTCTGCCCCACC
CTAA--------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------T-----------------------------------
------------------------CTCCCCCACCCTTACA--------------AAGTTT
CTT-------------------------------TGTAA--T------------------
---------------------------------------------------TCTCCT---
-------------TA-TCCTT---------GAGGATGCACTTTGTGAGATCCACCCCC-G
CCCCCAAAACATTGCTCTTAACTCCAC---------------------------------
-----------------------CGCCTATCCCAAAACTTATAAGAACCAACGATAAT--
-------CC-C---ACCACCCTTTGCTGACTCTCTTTTCAGACTCAGCCTGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
TTTCACACGGACACGCATG----------
>LTR7B_chr20_Sltr_fr_917__chr20_1821482618215221__
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCAGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACA---GAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCCGCCCCACC
CTAA--------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------------CTGATC--------------AATATT
CTT-------------------------------TATAA--T------------------
---------------------------------------------------CTTTAT---
-------------AA-CCCTT---------AAGAATGTACTTTGTGAGAGCCACCCCC-T
CCCCCAAAACATTGCTCTTAACTCCAT---------------------------------
-----------------------CGCCTATCCTAAAACCTATAAGAACCAATGATAAT--
-------CT-C---ACCACCCTTTGCTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAATAGCCGTGTTGCTCACACAAAGCCTG--TTT--GGTGGTGT
CTTCACATGGACACACGTG----------
>LTR7B_chr15_Sltr_496__chr15_2598678625987139_+_
-GTCAGGCCTCCGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATATC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCATCACTGTGATTTTTTCCTGCCCCACT
CTAACTGAT------ACAAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATA--------TT-----------------------------------
------------------------CTCCCCCGCCCTTAAG--------------AAGGTA
CTT-------------------------------TGTA----------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-----------------------TGCCTATCCC-AAACCTGTAAGAACTAATGATAAT--
-------CC-C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCTTCTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGATGCACATGA--CA-----
>LTR7B_chr1_Sltr_23__chr1_160906111160906495__
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCAACATATCC
CCTGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGG--------------------------
---------------------------------C----------TAAA----CTGATGGC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC
CTAACTGAT------ATGAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATA--------TT-----------------------------------
------------------------CTCCCCTGCCCTTAGG--------------AAGGTA
CTT-------------------------------TGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CG-CCCTT---------GGGAATGTACTTTGTA--------------
------------------------------------------------------------
-----------------------TGCCTATCCC-AAACCTATAAGAACTAATGATAAT--
-------CC-C---ACCACCTTTTGCTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC
AGGTGA-----T---TAAAAAGCTTTATTGCTCACAT-AAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGTGCGTGA--C------
>LTR7B_chr11_Sltr_212__chr11_107878985107879367_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
AATACATCCAGA------------------------------------------------
-----------------------------TGGCCTAAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACACAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
GTT---------------------------------------------------------
-------------------------------CCATCACT--GATTTGTTCCTGCCCCACC
CTAACTGAT------AGGAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATA--------TT-----------------------------------
------------------------CTCCCCTGCCCTTAAG--------------AAGGTA
CTT-------------------------------TGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CG-CCCT----------------------------------------
------------------------------------------------------------
-----------------------------------------TAAGAACTAATAATAAT--
-------CC-C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----T---TAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATGA--CA-----
>LTR7B_chr3_Sltr_1053__chr3_180130863180131214_+_
-GTCAGTTCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTAATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC
CTAATTAAT------ACTAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATA--------TT-----------------------------------
------------------------CTCCCCCGCCCTTAAG--------------AA----
------------------------------------------------------------
------------------------------------------------------------
-----------------------------------TGTACTTTGTA--------------
------------------------------------------------------------
-----------------------TGCCTATCCC-AAACCTATAAGAACTAATGATAAT--
-------CT-C---ACCACCTTTTGCTGACTCTTTTTTCGGA--CAGCCCGCCTGCACCC
AGGTAA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCATACGGACGCGCATGA--CA-----
>LTR7B_chr16_Sltr_545__chr16_2407896724079320_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACGGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTAATGAC
GTT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC
CTAACTGAT------ACGAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATA--------TT-----------------------------------
------------------------CTCCCCCGCCCTTAAG--------------AAGGTA
CTT-------------------------------TGTA----------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-----------------------CACCTATCCC-AAACCTATAAGAACTAATGATAAT--
-------CC-C---ATCATCCTTTGCTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGCTGCTCCCACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACACACGTGA--CA-----
>LTR7B_chr17_Sltr_598__chr17_4194334241943725__
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCT
CCTGTGAC---------------------------------------------CTGCACG
TATACAACCAGA------------------------------------------------
-----------------------------TGGCCCGAAGTAACTGAAG------------
------------------------------------------------------------
----------AATCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTGCTCCACC
C----TGAT------ACGAT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATA--------TT-----------------------------------
------------------------CTCCCTCACCCTCAAG--------------AAGGTA
CTT-------------------------------TGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CT-CCCTT---------AAGAATGTATTTTGTA--------------
------------------------------------------------------------
-----------------------CACCTATCCC-AAACCTATAAGAACTAATGATAAT--
-------CC-C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACACGTGTGA--C------
>LTR7Y_chr10_2ltr_int_fr_175__chr10_7681822176818660_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGTCATCGCATCC
CCTGGGAC---------------------------------------------TTGCAGG
TATATGCCCACA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCATCATTGTGATTTGTTCCTGCCCCACC
CTAACTAATCAATGTACTTT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA--------AT-----------------------------------
------------------------CTCCCCCACCCTTAAG--------------AAGGTT
CTT-------------------------------TGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAAAGTGTACTTTGTG--------------
---------------------------AG-ATCCACCCC-TGCCCACCAGAGAACAA--C
CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-CATCCTATAA-----------AATG-
GCCCCACCA-CT--ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACAC-GACGCGCATGA--AA-----
>LTR7Y_chrX_2ltr_int_fr_1791__chrX_45458714546320__
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCATG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------AATCACAAAAGAAGTGAATATGAC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC
CTAACTGATCAATGTACTTT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA--------AT-----------------------------------
------------------------CTCCCCCACCCTTAAG--------------AAGGTC
CTT-------------------------------TGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTG--------------
---------------------------AG-ATCCACCCC-TGCCCACCAGAGAACAA--C
CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG-
GCCCCACCC-CT--ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGCACATGA--A------
>LTR7Y_chr10_2ltr_int_fr_145__chr10_120844932120845403_+_
-GTCAGGCCTCTGAGCCCAGG-----------------------CCAGGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTAAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAACAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTGCCCCACT
CTAACTGATCAATGTACTTT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA--------AT-----------------------------------
------------------------CTCCCCCACCCTTAAG--------------AAGGTA
CTT-------------------------------TGTAG--T------------------
---------------------------------------------------CTCCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTG--------------
---------------------------AG-ATCCACCCC-TACCCACCAGAGAACAA--C
CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG-
GCCCCACCC-CT--ATCTCCCTTCGCTGACTCTCTTTTCGGACTTAGCCCACCTGCACCC
ATGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACCGACGCACATGA--A------
>LTR7Y_chr15_Sltr_500__chr15_3525466735255102__
TGTCAGGCCTCTGAGCCCAG----------------------------GCCATCGCATCC
CCTGTGGC---------------------------------------------TTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTAAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAACAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC
CTAACTGATCAATGTACTTT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA--------GT-----------------------------------
------------------------CTCCCCCACCCTTAAG--------------AAGGTT
CTT-------------------------------TGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTG--------------
---------------------------AG-ATCCACCCC-TGCCCACCAGAGAACAA--C
CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG-
GCCCCACCC-CT--ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCTTTATTGCTCACACGAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATGA--A------
>LTR7Y_chr3_2ltr_int_fr_961__chr3_12446211245092__
TGTCAGGCCTCTGAGCCCAGA-----------------------CCAGGCCATCGCATCC
CCTGTAAC---------------------------------------------TTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAACAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTGCCCCATC
CTAACTGATCAATGTACTTT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA--------AT-----------------------------------
------------------------CTCCCCCACCCTTAAG--------------AAGGTA
CTT-------------------------------TGTAG--T------------------
---------------------------------------------------CTCCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTG--------------
---------------------------AG-ATCCACCCC-TGCCCACCAGAGAACAA--C
CCCCTTTGACTGTAATTTTCCATCACCTTCCCA-AATCCTATAA-----------AACA-
GCCCCACCC-CT--ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGCGGTCT
CTTCACACAGACACGCATGA--A------
>LTR7Y_chr22_Sltr_933__chr22_2050840220508834__
TGTCAGGCCTCTGAGCCCAGG-----------------------CCAGGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAACAGC--------------------------
---------------------------------C----------GTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC
CTAACTGATCAATGTACTTT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA--------AT-----------------------------------
------------------------CTCCCCCACCCTTAAG--------------AAGGTT
CTT-------------------------------TGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTG--------------
---------------------------AG-ATCCATCCC-TGCCCACCAGAGAACAA---
-----TTGACT--AATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG-
ACCCCACCC-CT--ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATGA--A------
>LTR7Y_chr22_2ltr_int_931__chr22_1661130816611747_+_
-GTCAGGCCTCTGAGCCCAGG-----------------------CCAGGCCATCGCATCC
C--GTGAC---------------------------------------------TTGCACA
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAATTGAAG------------
------------------------------------------------------------
----------ATCCACAGAAGAAGTAAAAACAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC
CTAACTGATCAATGTACTTT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA--------AT-----------------------------------
------------------------CTCCCCCACCCTTAAG--------------AAGGTT
CTT-------------------------------TGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTG--------------
---------------------------AG-ATCCACCCC-TGCCCACCAGAGAACAA--C
CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACA-
GCCCCACCC-CT--ATCTCCCTTCACTGACTCTCTTTTCAGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCTTTATTGCTCACACGAAGCCTG--TTT--GGTGGTCT
CTTCACACGGATGCGCATGA--AA-----
>LTR7Y_chr4_2ltr_int_fr_1244__chr4_9202577292026242_+_
-GTCAGGCCTCTGAGCCCAGG-----------------------CCAGGCCATCGCATCC
CCTGTGAC---------------------------------------------GTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAACAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCATGACTGTGATTTGTTCCTGCCCCACC
CTAACTGATCAATGTACTTT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA--------AT-----------------------------------
------------------------CTCCCCCACCCTTAAG--------------AAGTTT
CTT-------------------------------TGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTG--------------
---------------------------AG-ATCCACCCC-TGCCCACCAGAGAACAA--C
CCCCTTTGACTGTAATTTTCCATTGCCTTCCCA-AATCCTATAA-----------AATG-
GCCCCACCC--C--ATCTCCCTTTGCTGACTGTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGATGGGTATGA--AA-----
>LTR7Y_chr9_2ltr_int_fr_1692__chr9_8270584782706286__
TGTCAGGCCTCTGAGCCCAGG-----------------------CCAGGCCTTCGCATCT
-CTGTGAC---------------------------------------------TTGCATG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTAAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAACAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC
CTAACTGATCAATGTACTTT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA--------AT-----------------------------------
------------------------CTCCCCCACCCTTAAG--------------AAGTTT
CTT-------------------------------TGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTG--------------
---------------------------AG-ATCCACCCC-TGCCCACCAGAGAACAA--C
CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACC-
GCCCCACCC-TT--ATCTCCCTATGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGATGCACATGA--A------
>LTR7Y_chr11_Sltr_210__chr11_130569681130570121__
TGTCAGGCCTCTGAGCCCAGG-----------------------CCAGGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAACAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC
CTAACTGATCAATGTACTTT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA--------AT-----------------------------------
------------------------CTCTCCCACCCTTAAG--------------AAGGTT
CTT-------------------------------TGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CTCTT---------GAGGATGTACTTTGTG--------------
---------------------------AG-ATCCACCCC-TGCCCACCAGAGAACAA--C
CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG-
GCCCCACCC-CT--ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCTTTATTGGTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCATATGA--A------
>LTR7Y_chr11_2ltr_int_fr_217__chr11_2056787520568314_+_
-GTCAGGCCTCTGAGCCGAGG-----------------------CCAGGCCATGGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAAATGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAACAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC
CTAACTGATCAATGTACTTT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA--------AT-----------------------------------
------------------------CTCCCCCACCCTTAAG--------------AA-GTT
CTT-------------------------------TGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CTCTT---------GAGAATGTACTTTGTG--------------
---------------------------AG-ATGCAACCC-TGCCCACCAGAGAACAA--C
CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG-
GCCCCACCC-CT--ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACACGTATGA--AA-----
>LTR7Y_chr11_2ltr_int_fr_282__chr11_9530941995309890_+_
-GTCAGGCCTCTGAGCCCAGG-----------------------CCAGGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAACAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTGCCCCACG
CTAACTGATCAATGTACTTT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA--------AT-----------------------------------
------------------------CTCCCCCACCCTTAAG--------------AAGGTT
CTT-------------------------------TGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTG--------------
---------------------------AG-ATCCACCCC-TGCCCACCAGAGAACAA--C
CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG-
GCCCCACCC-CT--ATCTCCCTTCACTGACTCTGTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGCGCGTGA--AA-----
>LTR7Y_chr19_2ltr_int_fr_698__chr19_55485765549016_+_
-GTCAGGCCTCTGAGCCCAGG-----------------------CCAGGCCATCGCATCC
CCTGTGAC---------------------------------------------TGGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAACAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC
CTAACTGATCAATGTACTTT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA--------GT-----------------------------------
------------------------CTCCCCCACCCTTAAG--------------AAGGT-
------------------------------------------------------------
------------------------------------------------------------
------------------------------GAGAATGTACTTTGTG--------------
---------------------------AG-ATCCACCCC-TGCCCACCAGAGAGCAA--C
CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG-
GCCCCACCC-GT--ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCGGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGCTTCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACGCGCATGA--AA-----
>LTR7Y_chr3_Sltr_1030__chr3_187185155187185626_+_
-GTCAGGCCTCTGAGCCCAGG-----------------------CCACGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAACAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC
CTAACTGATCAATGTACTTT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA--------AT-----------------------------------
------------------------CTCCCCCACCCTTAAG--------------AAGGTT
CTT-------------------------------TGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTG--------------
---------------------------AG-ATCCACCCC-TGCCCACCAGAGAGCAA--C
CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATCA-----------AACG-
GCCCCACCC-CT--ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATGA--AA-----
>LTR7Y_chr14_Sltr_452__chr14_3539623235396703_+_
-GTCAGGCCTCTGAGCCCAGG-----------------------CCAGGCCGTCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAACAGC--------------------------
---------------------------------C----------TCAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC
CTAACTGATCAATGTACTTT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA--------AT-----------------------------------
------------------------CTCCCCCACCCTTAAG--------------AAGGTT
CTT-------------------------------TGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTG--------------
---------------------------AG-ATCCACCCC-TGCCCACCAGAGAACAA--C
CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG-
GCCCCACCC-CT--ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATTTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGTGCATGA--AA-----
>LTR7Y_chr14_2ltr_int_fr_449__chr14_3125067031251138__
TGTCAGGCCTCTGAGCCCAGG-----------------------CCAGGCCATCGCACCC
CCTGTGAC---------------------------------------------TTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------CGGCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAACAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC
CTAACTGATCAATGTACTTT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA--------AT-----------------------------------
------------------------ATCCCCCACCCTTAAG--------------AAGGTT
CTT-------------------------------TGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTG--------------
---------------------------AG-ATCCACCCC-TGCCCACCAGAGAACAA--C
CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AATG-
GCCCCACCC-CT--ATCTCCCTTCGCTGACTGTCTTTTCGGACTCAGCCTGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACAGGGACACGCATGA--A------
>LTR7Y_chr1_Sltr_17__chr1_1324250013242971__
TGTCAGGTCTCTGAGCCCAAG-----------------------CCAACCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAACAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC
CTAACTGATCAATGTACTTT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA--------AT-----------------------------------
------------------------CTCCCCCACCCTTAAG--------------AAGGTT
CTT-------------------------------TGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTG--------------
---------------------------AG-ATCCACCCC-TGCCCACCAGAGAACAA--C
CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AATG-
GCCCCAACC-CT--ATCTCCCTTCACTGACTCTCTTGTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCGTATTGCTCACGCAAAGCCTG--TTT--GGTGGTCT
CTTAACAAGGACGCGCATGA--A------
>LTR7Y_chr1_Sltr_fr_34__chr1_197851433197851830__
------------------------------------------------------------
-CTGCGAC---------------------------------------------TTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAATAAGTAAAAACAGC--------------------------
---------------------------------C----------TTAA----CTGACGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC
CTAACTGATCAATGTACTTT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA--------AT-----------------------------------
------------------------CTCCCCCACCCTTAAG--------------AGGGTT
CTT-------------------------------TGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CTCTT---------GAGAGTGTGCTTTGTG--------------
---------------------------AG-ATCCACCCC-TGCCCACCAGAGAACAA--C
CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AATG-
GCCCCACCC-CT--ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACAAAA---------------------
-----------------------------
>LTR7Y_chr7_2ltr_int_fr_1491__chr7_113238838113239308__
TGTCGGGCCTCTGAGCCCAGG-----------------------CCAGGCCATCGCATCT
CCTGTGAC---------------------------------------------TTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAACAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTACCCCACC
CTAACTGGTCAATGTACTTT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA--------AT-----------------------------------
------------------------CTCCCCCACCCTTAAG--------------AAGGTT
CTT-------------------------------TGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTG--------------
---------------------------AG-CTCCACCCC-TGCCCACCAGAGAACAA--G
CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AATG-
GCCCCACCC-C---ATCTCCCTTCGCTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGTACACGCATGA--A------
>LTR7Y_chr16_2ltr_int_fr_560__chr16_8627809586278535_+_
-GTCAGGCCTCTGAGCCCAGG-----------------------CCAGGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
CATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAACAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC
CTAGCTGATCAATGTACTTT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA--------AT-----------------------------------
------------------------CTCCCCCACCCTTAAG--------------AAGGTT
CTT-------------------------------TGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTG--------------
---------------------------AG-ATCCACCCC-TGCCCAGCAGAGAACAA--C
CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG-
GCCCCACCC-CT--ATCTCCCTTCCCTGACTCTCTTTTCGGACGCAGCCCGCCTGCGCCC
AGGTGA-----AA--TACACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGGCT
CTTCACACGGACACGTATGA--A------
>LTR7Y_chr5_2ltr_int_fr_1318__chr5_180420071180420511__
TGTCAGGCCTCTGAGCCCAGG-----------------------CCAGGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCAGG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAACAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC
CTAACTGATCAATGTACTTT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA--------AT-----------------------------------
------------------------CTCCCCCACCCTTAAG--------------AAGGTT
CTT-------------------------------TGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTGGTG--------------
---------------------------AG-ATCCACCCC-TGCCCACCAGAGAACAA--C
CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG-
GCCCCACCC-CT--ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCGCCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGATGCGCATGA--A------
>LTR7Y_chrX_2ltr_int_fr_1718__chrX_109870422109870862__
TGTCAGGCCTCTGAGCCCAGG-----------------------CCAGGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAACAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTGGTTCCTGCCCCACC
CTAACTGATCAATGTACTTT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA--------GT-----------------------------------
------------------------CTCCCCCACCCTTAAG--------------AAGGTT
CTT-------------------------------TGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTG--------------
---------------------------AG-ATCCACCCC-TGCCCACCAGAGAACAA--C
CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AATG-
GCCCCACCC-CT--ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCTTG--TTT--GGTGGTCT
CTTCACACGGACACGCATGA--A------
>LTR7Y_chr10_Sltr_148__chr10_133004175133004613_+_
-GTCAGGCCTCTGAGCCCAGG-----------------------CCAGGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAACAGC--------------------------
---------------------------------C----------TTAA----CTGGTGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC
CTAACTGATCAATGTACTTT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA--------GT-----------------------------------
------------------------CTCCCCCACCCTTAAG--------------AAGGTT
CTT-------------------------------TGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTG--------------
---------------------------AG-ATCCACCCC-TGCCCACCAGAGAACAA--C
CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG-
GCCCCACCC-CT--AGCTCCCTTTGCTGA--CTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATGA--AA-----
>LTR7Y_chr3_Sltr_998__chr3_1600014216000613_+_
-GTGAGGCCTCTGAGCCCAGG-----------------------CCAGGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACATCCCGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAACAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC
CTAACTGATCAATGTGCTTT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA--------GT-----------------------------------
------------------------CTCCCCCACCCTTAAG--------------AAGGTA
CTT-------------------------------TGTAG--T------------------
---------------------------------------------------CTCCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTG--------------
---------------------------AG-ATCCACCCC-TGCCCACCAGAGAACAA--C
CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG-
GCCCCACCC-CT--ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATGA--AA-----
>LTR7Y_chr4_Sltr_1192__chr4_174488110174488550_+_
-GTCAGGCCTCTGAGCCCAGG-----------------------CCAGGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAACCAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC
CTAACTGATCAATGTACTTC----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA--------AT-----------------------------------
------------------------CTCCCCCACCCTTAAG--------------AAGGTT
CTT-------------------------------TGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTG--------------
---------------------------AG-ATCCACCCC-TGCCCACCAGAGAACAA--C
CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG-
GCCCCACCC-CT--ATCTCCCTTCGCTGACTCTCTTTTCGGATTCAGCCCACCTGCACCG
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATGA--AA-----
>LTR7Y_chr12_2ltr_int_fr_365__chr12_7008529070085729_+_
-GTCAGGCCTCTGAGCCCAGG-----------------------CCAGGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGACTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAACAGC--------------------------
---------------------------------C----------TTAA----ATGATGAC
ACT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC
CTAACTGATCAATGTACTTT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA--------AT-----------------------------------
------------------------CTCCCCCACCCTTAAG--------------AAGGTT
CTT-------------------------------TGCAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTG--------------
---------------------------AG-ATCCACCCC-TGCCCACTAGAGAACAA--C
CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AATG-
GCCCCACCC-CT--ATCTCCCTTC-CTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCACACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGTATGA--AA-----
>LTR7Y_chr14_Sltr_fr_444__chr14_2319778723198158__
TGTCAGGCCTCTGAGCCCAGG-----------------------CCAGGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TACACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAACAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC
CTAACTGATCAATGTACTTT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA--------AT-----------------------------------
------------------------CTCCCCCGCCCTTA----------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------AGAATGTACTTTGTG--------------
---------------------------AG-ATCCCCGCC-TGCCCACCAGAGAACAA--C
CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATGA-----------AATG-
GCCCCACCC-CT--ATCTCCCTTCGCTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCAAA------------------------
-------------------A--AA-----
>LTR7Y_chr20_Sltr_911__chr20_4242766142428101_+_
-GTCAGGCCTCTGAGCCCAGG-----------------------CCAGGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAACAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC
CTAACTGATCAATGTACTTT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATA--------AT-----------------------------------
------------------------CTCCCCCACCCTTAAG--------------AAGGTT
CTT-------------------------------TGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-GCCTT---------GAGAATGTACTTTGTG--------------
---------------------------AG-ATCCACTCC-TGCCCACGAGAGAACAA--C
CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AATG-
GCCCCACCC-CT--ATCTCCCTTCTCTGACTCTCTTTTGGGACTCAGCCCTCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CCTCACACGGACGCACATGA--AA-----
>LTR7Y_chr3_2ltr_int_fr_970__chr3_128959818128960251_+_
-GTCAGGCCTCTGAGCCCAGG-----------------------CCAGGCCATCACATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAATAAAAACAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCCGCCCCACC
CTAACTGATCAATGTACTTT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA--------GT-----------------------------------
------------------------CTCCCCCACCCTTAAG--------------AAGGTT
CTT-------------------------------TGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CTCTT---------GAGAATGTATTTTGTG--------------
---------------------------AG-ATCCACCCC-TGCCCACCAGAGAACAA--C
CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG-
GCCCCAC----------TCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATGA--AA-----
>LTR7Y_chr7_2ltr_int_fr_1529__chr7_2602936926029809__
TGTCAGGCCTCTGAGCCCAGG-----------------------CCAGGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCATG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTAAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAACAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC
CTAACTGATCAATGTACTTT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA--------AT-----------------------------------
------------------------CTCCCCCACCCTTAAG--------------AAGGTT
CTT-------------------------------TGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAATATACTTTGTG--------------
---------------------------AG-ATCCACCCC-TGCCCACCAGAGGACAA--C
CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG-
GCCCCACCC-GT--ATCTCCCTTCGCTGACTCTCTTATTGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACGCGCATGA--A------
>LTR7Y_chr7_2ltr_int_fr_1537__chr7_3430513234305572__
TGTCAGGCCTCAGAGCCCAGG-----------------------CCAGGCCATTGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTAAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAACAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC
CTAACTGATCAATGTACTTT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA--------AT-----------------------------------
------------------------CTCCCCCACCCTTAAG--------------AAGGTT
CTT-------------------------------TGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTG--------------
---------------------------AG-ATCCACCCC-TGCCCACCAGAGAACAA--C
CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AATG-
GCCCCACCC-CT--ATCTCCCTTCCCTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACAGGGACGCACATGA--A------
>LTR7Y_chr11_Sltr_240__chr11_4984278949843259__
TGTCAGGCCTCTGAGCCCAGG-----------------------CCAGGCCATTGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTAAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAACAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCACTGTGATTTGTTCCTGCGCCAAC
CTAACTGATAAATGTACTTT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA--------AT-----------------------------------
------------------------CTCCCCCACCCTTAAG--------------AAGGTA
CTT-------------------------------TGTAG--T------------------
---------------------------------------------------CTCCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTG--------------
---------------------------AG-ATCCACCCC-TGCCCACCAGAGAACAA--C
-CCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AATG-
GCCCCACCC-CT--ATCTCCCGTTGCTGACTCGCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAACCATGTTGCTCACACTAAGCCTG--TTT--GGTGGTCT
CTTTGCACAGATGCACATGA--A------
>LTR7Y_chr18_Sltr_618__chr18_5147176751472201__
TGTCAGGCCTCTGAGCCCAGG-----------------------CCAGGCCATTGCATCC
CCTGTAAC---------------------------------------------TTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTAAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAA---AAGTAAAAACAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC
CTAACTGATCAATGTACTTT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA--------AT-----------------------------------
------------------------CTCCCCCACCCTTAAG--------------AAGGTT
CTT-------------------------------TGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTG--------------
---------------------------AG-ATCCACCCC-TGCCCACCAGAGAA-----C
CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATGCTATAA-----------AACG-
GCCCCACCC-CT--ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGATGCGCATGA--A------
>LTR7Y_chr20_Sltr_905__chr20_3414474134145181__
TGTCAGGCCTCTGAGCCCAGG-----------------------CCAGGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATATATCCAGA------------------------------------------------
-----------------------------TGGCCTAAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAACAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC
CTAACTGATCAATGTACTTT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA--------AT-----------------------------------
------------------------CTCCCCCACCCTTAAG--------------AAGGTT
CTT-------------------------------TGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTG--------------
---------------------------AG-ATCCACCCC-TGCCCACCAGAGAAAAA--C
CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATGCTATAA-----------AACG-
GCCTCACCC-CT--ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATGA--A------
>LTR7Y_chr8_Sltr_fr_1601__chr8_4698691446987352_+_
-GTCAGGCCTCTGAGCCCAGG-----------------------CCAGGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTAAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAACAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC
CTAACTGATCAATGTACTTT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTT--------TT-----------------------------------
------------------------CTCCCCCACCCTTAAG--------------AAGGTT
CTT-------------------------------TGTAA--T------------------
---------------------------------------------------TGTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTG--------------
---------------------------AG-ATCCACCCC-TGCCCACCAGAGAACAA--A
CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATGCTATAA-----------AACG-
GCCCCACCC-CT--ATCTCCCTTTGCTGACTCTCTTGTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAGACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGTGCATGA---------
>LTR7Y_chr7_2ltr_int_fr_1535__chr7_3284309932843539__
TGTCAGGCCTCTGAGCCCAGG-----------------------CCAGGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACA
TATACATCCATA------------------------------------------------
-----------------------------TGGCCTAAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAACAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC
CTAACTGATCAATGTACTTT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA--------AT-----------------------------------
------------------------CTCCCCCACCCTTAAG--------------AAGGTT
CTT-------------------------------TGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CACTT---------GAGAATGTACTTTGTG--------------
---------------------------AG-ATCCACCCC-TGCCCACCAGAGAACAA--C
CCCCTTTGATTGTAATTTTCCATTACCTTCCCA-AGTCCTATAA-----------AACG-
GCCCCACCC-TT--ATCTCCCTATGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGCGCATGA--A------
>LTR7Y_chr10_Sltr_fr_192__chr10_9733891597339356_+_
--------CTCTGAGCCCAGG-----------------------CCAGGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTAAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAACAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC
CTAACTGATCAATGTACTTT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA--------AT-----------------------------------
------------------------CTCCCCCACCCTTAAG--------------AAGGTT
CTT-------------------------------TGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTG--------------
---------------------------AG-ATCCACCCC-TGCCCACCAGAGAACGA--C
CCCCTTTGGCTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACA-
GCCCCACCC-TT--ATCTCCCTACGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCACATGA--AA-----
>LTR7Y_chr21_Sltr_928__chr21_4142513241425578__
TGTCAGGCCTCGCATCCCAGG-----------------------CCAGGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCAGG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTAAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAACAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC
CTAACTGATCAATGTACTTT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA--------AT-----------------------------------
------------------------CTTCCCCACCCTTAAG--------------AAGGTT
ATT-------------------------------TGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTG--------------
---------------------------AG-ATTCACCCC-TGCCCACCAGAGAACAA--C
CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG-
GCCCCACCC-CT--ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TACACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGCACATGA--A------
>LTR7Y_chr22_Sltr_946__chr22_4410847144108911__
TGTCAGGCCTCTGAGCCCAGG-----------------------CCAGGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTAAATTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAACAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCAGCATTGTGATTTGTTCCTGCCCCACC
CTAACTGATCAATATACTTT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA--------AT-----------------------------------
------------------------CTCCCCCACCCTTAAG--------------AAGGTT
CTT-------------------------------TGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTG--------------
---------------------------AG-ATCCACCCC-TGCCCACCAGAGAACAA--C
CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG-
GCCCCACCC-CT--ATCTCCCTTCGCTGACTGTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCACATGA--A------
>LTR7Y_chr7_2ltr_int_fr_1498__chr7_121315380121315819_+_
-GTCAGGCCTCTGAGCCCAGG-----------------------CCAGGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCATG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTAAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAACAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCGCCATTGTGATTTGTTCCTGCCCCACC
CTAACTGATCAATGTACTTT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA--------AT-----------------------------------
------------------------CTCCCCCACCCTTAAG--------------AAGGTT
CTT-------------------------------TGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTG--------------
---------------------------AG-ATCCACCCC-TGCCCACCAGAGAACAA--C
CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AAGG-
GCCCCACCC-CT--ATCTCCCTTC-CTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATATTGCTCACACAAAGGCTG--TTT--GGTGGTCT
CTTCACATGGACGCGCATGA--AA-----
>LTR7Y_chr15_Sltr_511__chr15_5953468859535159__
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CTTGTGAC---------------------------------------------TTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTAAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAACAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCGTTGTGATTTGTTCCTGCCCCACC
CTAACTGATCAATGTACTTT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA--------AT-----------------------------------
------------------------CTCCCCCACCCTTAAG--------------AAGGTT
CTT-------------------------------TGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTG--------------
---------------------------AG-ATCCACCCC-TGCCCGCCAGAGAACAA--C
TCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AATG-
GCCCCACCC-CT--ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGCGTATGA--A------
>LTR7Y_chr22_Sltr_934__chr22_2663197326632439__
TGTCAGGCCTCTGAGCCCAAG-----------------------CCA-----TCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAACAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC
CTAACTGATCAATGTACTTT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA--------AT-----------------------------------
------------------------CTCCCCCACCCTTAAG--------------AAGGTT
CTT-------------------------------TGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAAAGTACTTTGTG--------------
---------------------------AG-ATCCACCCC-TGCCCACCAGAGAACAA--C
CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AATG-
GCCCCACCC-CT--ATCTCCCTTCGCTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCGTGA--A------
>LTR7Y_chr4_2ltr_int_fr_1165__chr4_152746707152747147__
TGTCAGGCCTCTGAGCCCAGG-----------------------CCAGGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACATCCAAA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTAAAAACAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
-------------------------------CCACCATTGTGATTTGTTCCTGCCCAACC
CTAACTGATCAATGTACTTT----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTA--------AT-----------------------------------
------------------------CTCCCCCACCCTTAAG--------------AAGGTT
CTT-------------------------------TGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CTCTT---------GAGAATGTACTTTGTG--------------
---------------------------AG-ATCCACCCC-TGCCCACCAGAGAACAA--C
CCCCTTTGACTGTAATTTTCCTTTACCTTCCCA-AATCCTATAA-----------AATG-
GCCCCACCC-CC--ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAATCCTG--TTT--GGTGGTCT
CTTCACACGGATGCGCATGA--A------
>LTR7Y_chr22_Sltr_fr_939__chr22_3839653938396890__
TGTCAGGCCTCTGAGCCCAGG-----------------------CCAGGCCATTGC----
------------------------------------------------------------
---TCACACAGG------------------------------------------------
-----------------------------TGGTCTGACGTGTATGAA-------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------ATTTGGTGCCG-------
-----TGA----------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------------CCCCAACCCTTAAG--------------AAGGTT
GTT-------------------------------TGTAA--T------------------
---------------------------------------------------TCTCCC---
-------------CA-CCCTT---------GAGAATGTACTTTGTG--------------
---------------------------AG-ATCCACCCC-TGCCCACCAGAGAACAA--C
CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AATG-
GCCCCACCC-C---ATCTCCCTTTGCTGACT--CTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCATATGA--A------
>LTR7bc_chr4_97141294_97141656_weakenh_SOLO_NANOG_44108_SOX2_TCF4_C_proto7bc___chr4_9714129497141656___1362
TGTCAGGCCTCTGAGCCCAAG-----------------------C---------------
-----------------------------------------------------CTGCAC-
TACACATCCAGA------------------------------------------------
-----------------------------TGTCCTGAAGCAAGTGAAG------------
------------------------------------------------------------
----------AATCACAAAAGAAGTGAAAATGGCCAGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GCGAAATTCCTTCTCCTGG--------------
----C----------TC-TG-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CTCTGTCCC-TGCCCACCAGAGAACAA--T
CCCTTTTGGCTGTAATTTTCCTCTACCTACCCA-AATCCTATAA-----------AATG-
GCCCCACCT-C-T-ATCTCCCTTTGCCGACT--CTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGCTGCTCACACAAAACCTG--TTT--GGTGGTCT
CTTCACATGGACGCGCGTG----------
>LTR7Y_chr10_2ltr_int_fr_134__chr10_103205441103205872_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAAGTGAAG------------
------------------------------------------------------------
----------AGTCACAAAAGAAGTGAAAATGGCTGGTTCC-------------------
------------TA------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------------------------------CAACCATTGTGATTTG
TTCCTGCCCCACCTTAACTGAGCAATTA--------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----C----------TC-AG-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------GAG----CACTTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCCACAAGAGAAAAA--C
CCCCTTTGACTGTAATTTTCCACTACCCACCCA-AATCCTATAA-----------AACT-
GTCCCACCC-C-T-ATCTTCCT-TGCTGACTCCTTTTTCGGACTCAGCCCTTCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACATGCATGA---------
>LTR7bc_chr4_33747450_33747884_EncodeRepressed_SOLO_C_proto7bc___chr4_3374745033747884___1434
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCAAG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAAGTGAAG------------
------------------------------------------------------------
----------AATCACAAAAGAAGTGAAAATGGCGGGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATAAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------------------------------CCACCATTGTGATTTG
TTCCTGCCCCACCTTAACTGAGCAATTA--------------------------------
------------ACC--------CT--GTGAAAGTCCTTCTTCTGG--------------
----C----------TC-AG-AAGTTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTCGTG--------------
---------------------------AC-CCCCGGCCC-TGCCCACAAGAGAAAAA--C
TCCCTTTGACTGTACTTTTCCACTACCCACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCCTTTTTTGGGCTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACATGCATGA--C------
>LTR7bc_chr4_169919754_169920188_h3k27ac_enh_SOLO_KLF4_NANOG_44108_proto7bc____chr4_169919754169920188____1434
-GTCGGGCCGTTGAGCCCAAC-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCATG
TATGCATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAAGTGAAG------------
------------------------------------------------------------
----------AATCACAAAAGAAGTGAAAATGGCCAGTTCT-------------------
------------TG------------------CA----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------------------------------TCACCATTGTGATTTG
TTCCTGCCCCACCTTAACTGAGCGATTA--------------------------------
------------ACC--------TT--GTGAAATTCCTTTTCCTGA--------------
----C----------TC-AG-AACCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCCGCAAGAGAACAA--C
CCCCTTTGACTGTAATTTTCCACTACTCACCCA-AATCCTATAA-----------AAGT-
GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCT
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACGTGCGTGA--CA-----
>LTR7bc_chrX_45400995_45401431_h3k27ac_enh_SOLO_NANOG_44108_C_proto7bc___chrX_4540099545401431___1433
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACT
TATATATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAAGAGAAA------------
------------------------------------------------------------
----------AATCACAAAAGAAGTGAAAATGGCCAGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------------------------------CCACCATTGTGATTTG
TCTCTGCCCCACCTTAACTGAGCGATTA--------------------------------
------------ACC--------TT--GTGACATTCCTTCTCCTGG--------------
----C----------TC-AG-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCCACAAGAGAACAA--C
CTCCTTTGACTGCAATTTTCCACTACCCACCCA-AATCCTATAA-----------AACT-
GCCCCACCT-C-T-ATCTTCCT-TGTTGACTCTCTTTTCGGACTCAGCCCGCCTGCATCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGCTCT
CTTCACACGGACACCCGTGA--C------
>LTR7Y_chr11_Sltr_fr_258__chr11_7453795974538389__
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCATG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAAGTGAAG------------
------------------------------------------------------------
----------AATCACAAAAGAAGTGAAAATGGCTAGTTCC-------------------
------------TG------------------CC----------TAAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------------------------------CCACCATTGTGATTTG
TTTCTGCCCCACCTTAACTGAGCGATTA--------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----C----------TC-AG-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACCCT-TGCCCACAAGAGAGCAA--C
CCCCTTTGACTGTAATTTTCCACTACCCACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCGCTGAC--TGTTTTTGGACTCAAGCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCCTGTTACTCACACAAATCCTG--TTT--GGTGGTCT
CTTCACACGGATGCGCGTG----------
>LTR7Y_chr5_Sltr_fr_1258__chr5_1010222410102655_+_
-GTCAGGCCTGTGAGCCCAAG-----------------------CTAAACCATCATATCC
CCTGTGAC---------------------------------------------CTGCATG
AATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAAGTGAAG------------
------------------------------------------------------------
----------AATCACAAAAGAAGTGAAAATGGCCGGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------------------------------CCACCATTGTGATTTG
TTTCCGCCCCACGTTAACTGAGCAATTA--------------------------------
------------ACC--------TT--GTGAAGTTCCTTCTCCTGG--------------
----C----------TC-AG-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCAACAAGAGAACAA--C
CCCCTTTGACTGTAATGTTCCACTACCCACCCA-AATCCTACAA-----------AACG-
GCCCCACCC-C---ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGATGCGCGTGA---------
>LTR7bc_chr16_48336421_48336854_EncodeTxn_SOLO_C_proto7bc___chr16_4833642148336854___1433
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCATG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAAGTGAAG------------
------------------------------------------------------------
----------AATCACAAAAGAAGTGAAAATGGTTGGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------------------------------CCACCATTGTGATTTG
TTTCTGTCCCACCTTAACTGAGCGATTA--------------------------------
------------ACC--------TA--GTGAAATTCCTTCTCCTGG--------------
----C----------TC-AG-AAGCTCCCCAAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCAGCAAGAGAACAA--C
CCCCTTTGACTGTAATTTTCCACTACCCACCCA-AATCCTATGA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCTCACCTGTACCC
AGGTGA-----AA--TAA-CAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTCCGCACGCACGCATGTGA--C------
>LTR7bc_chrX_43623115_43623542_EncodeRepressed_SOLO_proto7bc____chrX_4362311543623542____1426
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TATACAT-----------------------------------------------------
--------------------------------CCTGAAGCAGATGAAG------------
------------------------------------------------------------
----------AATCACAAAAGAAGTGAAAATGGCCGGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------------------------------CCACCATTGTGATTTG
TTTCTGCCCCACCTTAACTGAGCGATTA--------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----C----------TC-AG-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCCCCAAGAAAACAA--C
CCCCTTTGACTGTAATTTTCCACTACCCACCCA-AATCCTATAA-----------AACG-
GCCCCATCC-C-T-ATCTCCTTTCACTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGCTCT
CTTCACACGGATGTGCGTGA--CA-----
>LTR7Y_chr6_Sltr_fr_1438__chr6_3843331038433731_+_
-GTCAGGCCTCTGAGCCCTAA-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACA
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGC--------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------------------------------CCACCATTGTGATTTG
TTCCTGCCCCACCTTAACTGAGCGATTA--------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----C----------TC-AG-AACCTCCCCAAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCTGCAAGAGAAAAA--C
CCCCTTTGACTGTAATTTTCCACTACCCACCCA-AATCCTATAA-----------AACA-
GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCCTTTTTTGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG---TT--GGTGGTCT
CTTCACATGGACACATGTGA---------
>LTR7bc_chr4_83235408_83235838_EncodeRepressed_SOLO_proto7bc____chr4_8323540883235838____1386
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATGC
CCTGTGAC---------------------------------------------CTGCACA
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCGGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAA---AGTGAAAATGGC--------------------------
---------------------------------C--------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------------------------------------TG
TTCCTG-----CCTTAACTGATGACATT--------------------------------
------------ACC--------TT--GTGAAATTCCTCCTCCTGG--------------
----C----------TC-AG-AACCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCCATAAGAGAAAAA--C
CCCCTTTGACTGTAATTTTCCACTACCCACCCA-AATCCTGTAA-----------AACA-
GCCCCACCC-C---ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGTACCC
AGGTGA-----AA--TAAACAGCCTTGTTGTTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACACACATGA--CA-----
>LTR7Y_chr8_Sltr_fr_1605__chr8_5610734956107762_+_
-GTCAGGGCTCTGAGCCCAAG-----------------------CCAAGCCATCGTATCC
CCTGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCC---------TGAAG------------
------------------------------------------------------------
----------AATCACAAAAGAAGTGAAAATGGCCAGTT---------------------
----------------------------------------------------CTGATGAC
GTT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------------------------------CCACCATTGTGATTTG
TTCCTGCCCCACCTTAACTGAGCGATTA--------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTCG--------------
----C----------TC-AG-AACCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TACCTGGAAGAGAAAAA--C
CCCCTTTGACTATAATTTTCCACTGCCCACCCA-AATCCTATAA-----------AACA-
GCCCCACCC-C---ATCTCCCTTCGCTAACTCTCTTTTCGGACTCAGCCTGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACTGATGCACGTGA---------
>LTR7bc_chr13_48001786_48002189_h3k4me3_TSS_SOLO_KLF4_C_proto7bc___chr13_4800178648002189___1402
TGTCAGGCCTCTGAGCCCAAG-----------------------C---------------
-----------------------------------------------------CTGCACG
TGTACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAAGTGAAG------------
------------------------------------------------------------
----------AATCACAAAAGAAGGGAAATTGGCCGGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------------------------------CCACCATTGTGATTTG
TTCCTGCCCCACCTTAACTGAGTGATTA--------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----C----------TC-AG-AACCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCCGTAAGAGAAAAA--C
CCCCTTTG----TAATTTTCCGCTACCCATCCA-AATCCTATAA-----------AACA-
GCCCCACCC-C---ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGTTAA-----A---TAAACAGCCTTATTGCTCACAC----CCTG--TTT--GGCGGTGT
CTTCACACGGATGCGCGTGA--C------
>LTR7bc_chr4_91268547_91268957_h3k27ac_enh_SOLO_C_proto7bc___chr4_9126854791268957___1409
TGTCAGGCCTCTGAGCCCAAG-----------------------C---------------
-----------------------------------------------------CTGCACG
TATACGTCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAAGTGAAG------------
------------------------------------------------------------
----------AATCACAAAAGAAGTGAAAATGGCTGGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------------------------------CCACCATTGTGATTTG
TTCCTGCCCCACCTTAACTGATTGATTA--------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----C----------TC-AG-AACCTCCCCTGC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CC-CGCCCC-TGCCTGTAAGAGAAAAA--C
CCCCTTTGACTGTAATTTTCCACTACCCACCCA-AATCCTATAA-----------AACA-
GCCCCACCC-C---ATCTCCCTTTGCTGACTGTCTTTACGGACTCAGCCAGCCTGCACCC
AGGTGA-----A---TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTGT
CTTCACTGGGAAGCGCGTGA--C------
>LTR7bc_chr8_58465588_58466022_h3k27ac_EncodeRepressed_SOLO_proto7bc____chr8_5846558858466022____1434
-GTCAGGCCTCTGAGCCCGAG-----------------------CCAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAAGTGAAG------------
------------------------------------------------------------
----------AATCACAAAACAAGTGAAAATGGCTGGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATAAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------------------------------CCACCATTGTGATTTG
TTCCTGCCCCACCTTAACTGAGCGATTA--------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----C----------TC-AG-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCTGCCCC-TGCCCACAAGAGAAAAG--C
CCCCTTTGACTGTAATTTTCCACTACCCACCCA-AATCCTATAA-----------AACG-
GCCCCACAC-C---ATCTCCCTTCCCTAACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCTTTTTGCTCACACAGATCCTG--TTT--GGTGGTCT
CTTCACACGGATGCACGTGA--CA-----
>LTR7bc_chr1_1470859_1471236_h3k4me3_TSS_SOLO_proto7bc____chr1_14708591471236____1375
-GTCAGTCCTCTGAGCCCAAG-----------------------C---------------
-----------------------------------------------------CTGCACG
TATACGTCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAAGTGAAG------------
------------------------------------------------------------
----------AATCACAAAATAAGTGAAAATGGCTGGTTCC-------------------
------------TG------------------CC----------TTAG----GTGATGGC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------------------------------CCACCATTGTGATTTG
TTCTTGCCCCACCTTAACT-----------------------------------------
----------------------------------------TCCTGG--------------
----C----------TC-AG-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCTGCAAGAGAAAAA--C
GCCCTTT----GTCATTTTCCATTACCCACCCA-AATCCTAGAA-----------AACG-
GCCCCACCC-C---ATCTCCCTTCGTCGACTCT----TGGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTACTGCTCACACAAAACCTG--TTT--GGTGGACT
CTTTACATGGACGCACATGA--CA-----
>LTR7bc_chr6_39131513_39136520_1447_1_EncodeTxn_GRO5of7_GRO6of7_GRO7of7_C_proto7bc___chr6_3913607439136520___1430
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAACCCATCGTATCC
CCTGTGAC---------------------------------------------CTGCACC
TAGACGTCCAGA------------------------------------------------
-----------------------------CGGCCTGAAGCAAGTGAAG------------
------------------------------------------------------------
----------AATCACAAAAGATGTGAAAA-GGCTGGTTCC-------------------
------------TG------------------CC----------TTAC----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------------------------------CCACCATTGTGATTTG
TTCCTGCCCCACCTTAACTGAGCCATTA--------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----C----------TC-AG-AACCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCCGTAAGAGAAAAA--C
CCCCTTTGACTGTAATTTTCCACTACCCACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C---ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAGCAGCTTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTCCACACGGACGCGCAT-----A-----
>LTR7bc_chrX_8356064_8356497_h3k27ac_EncodeTxn_SOLO_C_proto7bc___chrX_83560648356497___1433
TGTCAGGCCTCTAAGCTCAAG-----------------------CCAAGTCATCATATCC
CCTGTGAT---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAAGTGAAG------------
------------------------------------------------------------
----------AATCACAAAAGAAGTGAAAATGGCCGGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------------------------------CCACCATTGTGATTTG
CTCCTGCCCCACCTTAACTGAACGATTA--------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----C----------TC-AG-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCTGCAAGAGAAAAA--C
CCCCTTTGACTGTAATTTTCCACTACCCACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C---ATCTCCCTTCGCTGACTTTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGTCTG--TTT--GGTGGTCT
CTTCATACAGACGCACATGA--C------
>LTR7bc_chrX_28507462_28507894_h3k4me3_EncodeTxn_SOLO_KLF4_NANOG_44108_C_proto7bc___chrX_2850746228507894___1432
TGTCAGGCCTCTTAGCCTAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCAC-
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAAGGGAAG------------
------------------------------------------------------------
----------AATCACAAAAGAAGTGAAAATGGCCGATTCC-------------------
------------TG------------------CC----------TTAA----CTAATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------------------------------CCACCATTGTGATTTG
TTTCTGCCCCACCTTAACTGAGCGATTA--------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGC--------------
----C----------TC-AG-AACCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCTGCAAGAGAACAA--C
CCCATTTGATTGTAATTTTCCACTACCCATCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C---ATATCTCTTCGCTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCTTG--TTT--GGTGGTCT
CTTCACACGGACGCACATGA--A------
>LTR7bc_chr2_113102528_113102959_EncodeTxn_SOLO_C_proto7bc___chr2_113102528113102959___1431
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCAATGTATGC
CCTGTGAC---------------------------------------------CTGCACA
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAAGTGAAG------------
------------------------------------------------------------
----------AATCACAAAAGAAGTGAAAATGGCCAGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------------------------------CCACCATTGTGATTTA
TTCCTGCCCCACCTTAACTGAGCGATTA--------------------------------
------------ACC--------TT--GTGAAATTCCTTTTCCTGG--------------
----C----------TC-AG-AACCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACGCC-TGCCCA-AAGAGAGAAA--C
CCCCTTTGACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACC-
TCCCCACCC-C---ATCTCCCTTCGCTGACTCTCTT-TCAGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
TTTCACACAGACGCACGTGA--C------
>LTR7bc_chr12_7629172076297783_3760_KAP1_EncodeRepressed_GRO2of7__chr12_7629172076292127____1407
-GTCAGGCCTCTGAGCCCAAG---------------------------------------
-------C---------------------------------------------CTGCACA
TATACATCCAGA------------------------------------------------
-----------------------------GGGCCTGAAGCAAGTGAAG------------
------------------------------------------------------------
----------AATCACAAAAGAAGTGAAAATGGCTGGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------------------------------CCACCATTGTGATTTG
TTCCTGCCCCACCTTAACTGAGTGATTA--------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----C----------TC-AG-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCAATAAGAGAACAA--C
CCCCTTTGACTGTAATTTTCCACTACCCACCCA-AATCCTGTAA-----------AACA-
GCCCCACCC-C-T-ATCTCCCCTC----ACTCTCTTTTTGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
TTTCACACAGACATGCGTGA--CA-----
>LTR7bc_chr15_33589896_33590328_EncodeTxn_SOLO_C_proto7bc___chr15_3358989633590328___1432
--TCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCAACGTATCC
CCTGAGAC---------------------------------------------CTGCACG
TATATGTCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAAGTGAAG------------
------------------------------------------------------------
----------AATCACAAAAGAAGTGAAAATGGCCGGTTCC-------------------
------------TG------------------CC----------TTAA----CCGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------------------------------CCACCATTGTGATTTG
TTCCTGCCCCACCTTAACTGAGAGATTA--------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTAG--------------
----C----------TC-AG-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------G---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCCACAAGAGAACAA--C
CCCCTTTGACTGTAATTTTCCACTACCCACCCA-AATCCTATAA-----------AATG-
GCCCCACCC-C-T-ATCTCTCTTCACTGACTCTCTTTTCGAACTTAGCCCACCTGCACCC
AGGTGA-----AA--TCAACAGCTTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACACACATGA--C------
>LTR7bc_chrX_32538158_32538590_EncodeRepressed_SOLO_proto7bc____chrX_3253815832538590____1432
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCCTTTCC
CCTATGAC---------------------------------------------CTGCACC
TTTACGTCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------AATCACAAAAGAAGTGAAAATGCCCGGTTGC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------------------------------CCACCATTGTGATTTG
TTTTTGCCCCACCTTAACCGAGCGATTA--------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----C----------TC-AA-AACCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCCACAAGAGAAAAA--T
CCCCTTTGACTGTAATTTTCCACTACCCACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCCGTGACTCTCTTTTCAGACTCAGCCTGCCTGCACCC
AGGTGA-----AA--TAGACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACATACGTGA---------
>LTR7Y_chrX_Sltr_1743__chrX_120041755120042193_+_
-ATCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCGTAACC
CCTGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAAGTGAAG------------
------------------------------------------------------------
----------AATCACAAAAGAAGTGAAAATGGCCGGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------------------------------CCACCATTGTGATTTG
TTCCTGCCCCACCTTAACTGAGCAATTA--------------------------------
------------ACC--------TT--GTGAAATTCCTTCACCTGG--------------
----C----------TC-CA-AACCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------GC-CCCTGCCCC-TGCCCATAAGAGAAAAA--C
CCACTTTGATTGTAATTTTTCACTACCTACCCA-AATCCTATAA-----------AACA-
GCCCCACCC-C-T-ATCTCCCTTCACTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC
AGGTAA-----AA--TAAACAGCCCCGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGTGCATGA--AA-----
>LTR7Y_chrX_Sltr_1744__chrX_120194173120194611__
TATCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCGTAACC
CCTGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAAGTGAAG------------
------------------------------------------------------------
----------AATCACAAAAGAAGTGAAAATGGCCGGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------------------------------CCACCATTGTGATTTG
TTCCTGCCCCACCTTAACTGAGCAATTA--------------------------------
------------ACC--------TT--GTGAAATTCCTTCACCTGG--------------
----C----------TC-CA-AACCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------GC-CCCTGCCCC-TGCCCATAAGAGAAAAA--C
CCACTTTGATTGTAATTTTTCACTACCTACCCA-AATCCTATAA-----------AACA-
GCCCCACCC-C-T-ATCTCCCTTCACTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC
AGGTAA-----AA--TAAACAGCCCCGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGTGCATGA--A------
>LTR7bc_chr1_180921023_180921412_EncodeRepressed_SOLO_C_proto7bc___chr1_180921023180921412___1387
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCGTATCC
CCTGTGAC---------------------------------------------CTGCACC
TTTATGTCCAGT------------------------------------------------
-----------------------------TGGCCTGAAGCAAGTGAAG------------
------------------------------------------------------------
----------AATCACAAAAGAAGTGAAAATGGCCGGTTCC-------------------
------------TA------------------TC----------TTAC----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTTCTGG--------------
----C----------TC-AA-AATCTCCTCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCCGTAAGAGAAAAA--C
CCCCTTCGATTGTAATTTTCCTCTACCCACCCA-AATCCTATAA-----------AACG-
GCCCCACC--C-T-ATCTCCCTTCACTGACTCTCTTTTTGGACTCAGCCCTTCTGCACCC
AGGTGA-----AA--TAAACAGACTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
TTTCACACGGACGTGCGTG----------
>LTR7bc_chr3_185786306_185786737_h3k27ac_TSS_SOLO_NANOG_44108_SMAD11_proto7bc____chr3_185786306185786737____1431
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCGTATCC
CCTGTGAC---------------------------------------------CTGCACG
TATATGTCCACA------------------------------------------------
-----------------------------TGGCCTGAAGCAAGTAAAG------------
------------------------------------------------------------
----------AATCACAAAAGAAGTGAAAATGGCCGGTTCC-------------------
------------TG------------------CC----------TTCA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------------------------------CCACCACTGTGATTTG
TTCCTGCCCCACCTTAACTGAGCAATTA--------------------------------
------------ACC--------TT--GTTAAATTCCTTCTCCTGG--------------
----C----------TC-AG-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC---CCGCCCC-TGCCCGTAAGAGAAAAA--C
CCCCTTTGATTGTAATTTTCCACTACCCACCCA-AATCCTATAA-----------AACA-
GCCCCACC--C-T-AGGTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGCGCGTGA--CA-----
>LTR7bc_chr14_95968233_95968645_h3k27ac_EncodeTxn_SOLO_NANOG_proto7bc____chr14_9596823395968645____1411
-GTCAGGCCTCTGAGCCCAAG-----------------------C---------------
-----------------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAAGTGAAG------------
------------------------------------------------------------
----------AATCACAAAAGAAGTGAAAATGGCCGGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
TTT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------------------------------CCACCATTGTGATTTA
TTCCTGCCCCACCTTAACTGAGCGATTA--------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----C----------TC-AG-AAGCTCCCCGAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCTGCCCC-TGCCCGTAAGAGAAAAA--C
CCCCTTTGACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTGGCTGACTCTCTTTCTGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGACTTGTTGCTCACACAAAGCATG--TTT--GGTGGTCT
CTTCACATGTACGCGTGTGA--TA-----
>LTR7bc_chr12_31807215_31807647_EncodeRepressed_SOLO_proto7bc____chr12_3180721531807647____1432
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAG------------
------------------------------------------------------------
----------AATCACAGAAGAAGTGAAAATGGCCCATTCC-------------------
------------TG------------------CC----------TTAA----CTTATGAC
ATC---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------------------------------CCACCATTGTGATTTG
TTGCTGCCCCACCTTAACTGAGCGATTA--------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----C----------TT-AG-AAACTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACCTA-TGCCTGCAAGAGAAAAA--C
CCCTTTTGACTGTAATTTTCCACTACCCACACA-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCGCTGACTC--TTTCTGGACTCAGCCCGCCTGCACCC
AGTTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGATGCGCGTGA--CA-----
>LTR7bc_chr16_74663_75026_weakenh_SOLO_proto7bc____chr16_7466375026____1359
-GTCAGGCCTCTGAGCCCAAG-----------------------C---------------
-----------------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------T-----GAAGCAAGTGAAG------------
------------------------------------------------------------
----------AATCACAAAAGAAGTGAAAATGGCCGGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----C----------TC-AG-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TCCCCGCCACAGAACAA--C
CCCCTTTGACTGTAATTTTCCACTGCCCGCCCA-AACCCTATAA-----------AACG-
GTCCCACCC-C---ATCTCCCTTCCCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--CTT--GGTGGTCT
CTTCACACGGACGCGCACGA---------
>LTR7bc_chr2_78758203_78764267_2386_KAP1_weakenh_GRO3of7_proto7bc____chr2_7875820378758579____1366
-GTCAGGCCTCTGAGCCCAAG-----------------------C---------------
-----------------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAAGTAAAG------------
------------------------------------------------------------
----------AATCACAAAAGAAATGAAAATGGCTGGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAT
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GCC--------TT--GTGAAATTCCTTCTCCTGG--------------
----C----------TC-AG-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCCGCAAGAGAACAA--C
CCCCTTTGACTGTAATTTTCCACTACC-ACCCA-AATCATATAA-----------AACT-
GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTTGGACTCAGCCCGCCTGCACAC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGATGCGCATGA--CA-----
>LTR7bc_chr4_163103887_163104322_EncodeTxn_SOLO_KLF4_C_proto7bc___chr4_163103887163104322___1390
TGTCAGGCCTCTGAGCCCAAG-----------------------C---------------
-----------------------------------------------------CTGCATG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAAGTGAAG------------
------------------------------------------------------------
----------AATCACAAAAGAAGTGGAAACGGCCGGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----C----------TC-AG-AACCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGGG--------------
---------------------------AC-CCCCACCCC-TACCCGCAAGAGAACAA--C
CCCCTTTGACTGTAATTTTCCACTACCCACCCA-AATCCTGTAA-----------AACA-
GCCCCACCC-C-T-ATCTCCCTTCTCTGACTCTCTTTTTGGACTCAGTCCGCCTGCACCC
TGGTGA-----AA--TAAACAGCTTTATTGCTCACACATAGCCTG--TTG--GGTGGTCT
CTTCACACGGACGCGCATGA--C------
>LTR7bc_chr16_59613175_59613565_weakenh_SOLO_NANOG_proto7bc____chr16_5961317559613565____1389
-GTCAGGCCTCTGAGCCAAAG---------------------------------------
-------C---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAAGTGAAG------------
------------------------------------------------------------
----------AATCACAAAAGAAGTGAAAATGGCCGGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----C----------TC-AG-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCTGCCCA-GGCCTGCAAGAGAAAAA--C
CC-CTTTGACTGTAATTTTCCACTACCCACCCA-AATCCTATAA-----------AACT-
GCCCCACCC-C-T-ATCTCCCTTCCCTGACTCTTTTTTCAGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTT--TTT--GGTGATCT
CTTCACATGGACATGTGTGA--CA-----
>LTR7bc_chr9_87408069_87408472_h3k27ac_enh_SOLO_SMAD11_C_proto7bc___chr9_8740806987408472___1403
-------CCTCTGGGACCAAG---------------------------------------
-------C---------------------------------------------CTGCACC
TATACATCCAGA------------------------------------------------
-----------------------------TGGACTGAAGGAAGCAAAG------------
------------------------------------------------------------
----------AAACACAAAGGAAGTGAAAATGGCTGGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----C----------TC-AG-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCC-GCCCC-TGCCCGCAAGAGAAAAA--C
CCCCTTTGACTGTAATTTTCCACTACCCACCCA-AATCCTATAA-----------AACT-
GCCCCACCC-C-T-ATCTGCCTTTCCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----GA--TAAACAGCCTCGTTGCTTACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACGTGTGTGA--C------
>LTR7bc_chr6_63961194_63961665_EncodeRepressed_SOLO_7old____chr6_6396119463961665____1369
-GTCAGGCCTCTGGGTCCAAG---------------------------------------
-------C---------------------------------------------TTGCACG
TATACATCTAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAAGTGAAG------------
------------------------------------------------------------
----------AATCACAAAAGAAGTGAAAGTGGCCAGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAA
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----C----------TC-AG-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCTGCAAGAGAGAAA--C
CCCCTTTGACTGTAATTTTCCACTACCCACCCA-AATCCTATAA-----------AACA-
GCCCCACC--C-T-GTCTCCCTTGGCTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC
ACGTGA---------TAAA------------------AAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACACGTATGA--CA-----
>LTR7bc_chr2_49277627_49277988_EncodeRepressed_SOLO_proto7bc____chr2_4927762749277988____1361
-GTCAGGCCTCTGAGCCCAAG---------------------------------------
-------C---------------------------------------------CTGCAC-
-----ATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAAGTGAAG------------
------------------------------------------------------------
----------AATCACAAAATAAGTGAAAATGGCCGGTTCC-------------------
------------TG------------------CT----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----C----------TC-AG-AAGCTCCCCAAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CATCTTGTG--------------
---------------------------AC-CCCTGCCCC-TGCCTGCCAAAGAACAA--C
CCCCTTTGACTGCAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACA-
GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC
AGGTTA-----AA--TAAACAGCCTTGTTGCTCACACGAAGCCTG--TTA--GGTGGTCT
CTTCACTTGGACACGTGTGA--CA-----
>LTR7bc_chr7_152884633_152885000_weakenh_SOLO_proto7bc____chr7_152884633152885000____1367
-GTCAGGCCTCTGAGCCCAAG---------------------------------------
-------C---------------------------------------------CTGCACA
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAAGTAAAG------------
------------------------------------------------------------
----------AATCACAAAAGAAGTGAAAATGGCCGGTTCC-------------------
------------TG------------------CC----------CTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----C----------TC-AG-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCGTCCC-TGCCCACCAGAGAACAA--C
CCCCTTTGACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACA-
GCCCCACCG-G-T-ATCTCCCTTCGCTGACTCTCTTTTAGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTCCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACACGTGTGA--CA-----
>LTR7bc_chr18_30612756_30613127_h3k27ac_enh_SOLO_proto7bc____chr18_3061275630613127____1371
TGTGA-------------------------------------------------------
-------C---------------------------------------------CTACACG
TATAGATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAAGTGAAG------------
------------------------------------------------------------
----------AATCACAAAAGAAGTGAAAATGGCCAGTTCC-------------------
------------TG------------------TC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----C----------TC-AG-AAGCTCCCCCAT---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTA--------------
---------------------------AC-CCCGGCCCC-TGCCAGCCAGAGAAC-A--T
CCCCTTTGACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AGTG-
GCCCCACC--C-C-ATCTCCTTTCGCTGACTCTCTTTTCAGACTCAGCCGGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACAGGGACGCAAGTGA--CA-----
>LTR7bc_chr4_179403518_179409294_1720_KAP1_EncodeTxn_proto7bc____chr4_179403518179403883____1365
-GTGAGGCCTCTGAGCCCTAG---------------------------------------
-------C---------------------------------------------CTGCACA
TATACATGCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAAGCGAAG------------
------------------------------------------------------------
----------AATCAGAAAAGAAGTGAAAATGGTCAGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----C----------TC-AG-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CTCCGCCCC-TGCCGGCCAGAGAACAA--C
CCCCTTTGACTGTAATTTTCCACTAT-TACCCA-AATCCTATAA-----------AACG-
GCCCCACC--C-T-ATCTCTCTTCGCTGACTCTCTTTTTGGACTCAGCCTGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCGCACAAAGCCTG--TTT--GGTGGTCT
CTTCACGTGGACACAAGTGA--C------
>LTR7bc_chr14_102239957_102245769_2377_1_EncodeTxn_proto7bc____chr14_102239957102240323____1364
-GTCAGGCCTCTGAGCCCAAG---------------------------------------
-------C---------------------------------------------CTGCA-G
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCCGAAGCAAGTGAAG------------
------------------------------------------------------------
----------AATCACAAAAGAAGTGAAAATGGCCAG-CCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----C----------TC-AG-AAGCTTCCACAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AT-CCCCGCCCC-TGCCCGCCAGAGAACAA--C
CCCCTTTGACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACG-
ACCCACCC--C-T-ATCTCCCTTTGCTGACTCTGTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCCG--TTT--GGTGGTCT
CTTCACAGGGACGCGCGTGA--CA-----
>LTR7bc_chr7_17414063_17420763_2366_1_EncodeRepressed_GRO4of7_proto7bc____chr7_1741406317414497____1390
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCGTATCC
CCTGTGAC---------------------------------------------CTGCACA
TATACATCCAGA------------------------------------------------
-----------------------------TGACCTGAAGCAAGTGAAG------------
------------------------------------------------------------
----------AATCACAAAAGAAGTGAAAATGGCCGGTTCC-------------------
------------TG------------------CC----------TTAA----CTCATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GGGAAATTCCTTCTCCCGG--------------
----C----------TC-AG-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTC--------------
---------------------------AC-CCCCACCCC-TGCCCACCAGAGAACAA--C
CCCCTTTGACTGTGATTTTCCACCACCTACCCA-AATCCTATAA-----------AACA-
GCCCCACCC-C-T-ATCTCCGTTTGCTGACTCTCTTTTCAGACTCAGCCTGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGTCTG--TTT--GGTGGTCT
CTTCACATGGACGCACGTGA--CA-----
>LTR7bc_chr7_51868272_51868662_EncodeRepressed_SOLO_proto7bc____chr7_5186827251868662____1390
-GTCAGGCCTCCGAGCCCAAG-----------------------CTAAGCCATCATATCC
CTTGTGAC---------------------------------------------CTGCACA
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAAGTGAAG------------
------------------------------------------------------------
----------AATCACAAAAGAAGTGAAAATGGCCGGTTCC-------------------
------------TG------------------AC----------TTAA----TTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----C----------TC-AG-AAGTTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTT--------------
---------------------------AC-CCCCACCCT-TGCCCACCAGAGAACAA--C
CTCCTTTCACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AAGG-
GCCCCAGCC-C-T-ATCTCCCTTTGCTGACTGTGTTTTTGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGATGCGTGTGA--CA-----
>LTR7bc_chr19_23026429_23032231_1417_1_EncodeRepressed_C_proto7bc___chr19_2303184123032231___1390
TGTCACACCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCATG
TATATATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAAGTGAAG------------
------------------------------------------------------------
----------AATCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----C----------TC-AG-AACCTCCCCCAT---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----AACCTTGTG--------------
---------------------------AC-CCCCACCCC-TGACCGCCAGAGAACAA--C
CCCCTTTGACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACA-
GCCCCACCC-C-T-ATCTCCCTTCGCGGACTCTCTTTTTGGACTCAGCCAGCCTGTTCCC
AGGTGA-----AA--TAAATAGCCTTGTTGCTCACACAAAGACTG--TTT--GGTGGTCT
CTTTACACAGATGCACGTGA--C------
>LTR7bc_chr7_43202709_43203099_EncodeTxn_SOLO_proto7bc____chr7_4320270943203099____1390
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCATG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAAGTGAAG------------
------------------------------------------------------------
----------AATCACGAAAGAAGTGAAAATGGCTGATTCC-------------------
------------TG------------------CC----------TTGA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----C----------TC-AG-AAGCTCCCCAAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------G---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACCCC-TGCTAGCCAGAGGACAA--C
CCCCTTTGACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACA-
GCCCCACCC-C-T-ATCTCCCTTCGCTGATTCTCTTTTTGGACTCAGCCCGCCTGCCCCC
AGGTGA-----AA--TGAACAGCTTTGTTGCCCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCGTGA--CA-----
>LTR7bc_chrX_6512930065135094_2996_1_EncodeRepressed_GRO2of7__chrX_6513471365135094___1381
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATAC
CCTGTGAC---------------------------------------------CTGCGCA
TAT-----CAGG------------------------------------------------
-----------------------------T-GTCTAAAGCAAGTGAAG------------
------------------------------------------------------------
----------AATCACAAAAGAAGTAAAAATGGCTGGTTCC-------------------
------------TG------------------CC----------TTAA----CTGACGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--ATGAAATTTCTTCTCCTGT--------------
----C----------TC-AG-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AT-TCCCGCCCC-TGCCTGCCAGAGAACAA--C
C-CCTTTGACTGTAATTTTCCCTTACCTACCCA-AATCCTACAA-----------AACT-
GCCCCACCC-C-T-AACTCCCTTTGCTGA--CTCTTTTCAGACTCAGCCCGCCAGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCACGTGA--C------
>LTR7bc_chr1_96623317_96623706_EncodeTxn_SOLO_C_proto7bc___chr1_9662331796623706___1387
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATAT-C
CCTGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAAATGAAG------------
------------------------------------------------------------
----------AATCACAAAAGAAGTGAAAATGGCCAGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----C----------TC-AG-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------AAG----CACCTTGTG--------------
---------------------------AC-TCCCACCCC-TGCCCGCCGAAGAACAA--C
CCCCTTTGACTGTAATTTTCCATTACCTACCCA-AATCCTACAA-----------AATG-
GCCCCACCC-C-T-ATCTCCCTTCGCTGA--CTCTTTTCAGACTCAGCTTGCCTGCACCC
AGGTGA-----AA--TAAACAGACTTGTTGCTCACAAAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGATGCGTGTGA--C------
>LTR7Y_chr12_Sltr_fr_358__chr12_5676589256766313_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCACATCC
CCTGTGAC---------------------------------------------CTGCATG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAG------------
------------------------------------------------------------
----------ATCCACAAAAGAAGTGAAAATAGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGA-GTG
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------AAC--------TT--GTGAAATTCCTTCTCCTGG--------------
----C----------TC-AG-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTATG--------------
---------------------------AC-CCCCACCCC-TGCCTGCAAGAGAAAAA--C
CCCCTTTAAATGTAATTTTCCGCTACCCACCCA-AATCCTATAA-----------AATG-
ACCCCACCC-C---ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGATCT
CTTCACTGGGACGCGTGTGA---------
>LTR7bc_chr7_92479193_92485274_3951_1_EncodeTxn_GRO3of7_C_proto7bc___chr7_9248484192485274___1387
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCC--TCC
CCTGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACCAAAG------------
------------------------------------------------------------
----------AATCACAAAAGCAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----C----------TC-AA-AACCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCCCTAAGAGAAA-A--C
CCCCTTTGATTATAATTTTCCACTACCCACCCA-AATCCTATAA-----------AATG-
GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCCTTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCTCATGA--C------
>LTR7d1_chr11_6366028_6371660_3013_ZNF534_EncodeRepressed_7down____chr11_63660286366431____1403
-GTCAGGCCTCTGAGCCAAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACA
TACACATCCAGA------------------------------------------------
-----------------------------TGGCCTGCCTTAACTGAGG------------
------------------------------------------------------------
----ACATTCAACCACAAAAGAAGTGAAAATGGCTGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCATTTTCCTGG--------------
----CCCATCCTGGCTC-AA-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACCCC-TGCCCGCCAGAGAACAA--C
CCCCTTTGACTATAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AATG-
ACCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTCTTCAGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGGCT
CTTCACACGGACG----------------
>LTR7Y_chr1_2ltr_int_fr_118__chr1_7970163179702062__
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCT
CCTGTGAC---------------------------------------------TTGCACA
TATATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAAGGCCCTGC-CCTGCCTTAACTGAT-----------------------
---GACATACCACCA-------------------------T-------------------
------------TGTGATTTGTTCCTGCCCCACC----------TTAACTGAGTGATTA-
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------CT--GTGAATTTCCTTCTCCTGG--------------
----TAC-----------AG-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CC-CGCCCC-TGCCCACCAGAGAACAA--C
CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATTCTATAA-----------AATG-
GCC-CACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCTCTCCTGCAACC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAACCCTG--TTT--GGTGGTCT
CTTCACACAGACGCGCATGAA--------
>LTR7Y_chr6_2ltr_int_fr_1405__chr6_146456036146456469__
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAAGGCCCTGC-CCTGCCTTAACTGAT-----------------------
---GACATTCCACCA-------------------------T-------------------
------------TGTGATTTGTTCCTGACCCACC----------TTAACTGAGTGATTA-
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------CT--GTGAATTTCCTTCTCCTGG--------------
----CTC-----------AG-AAGCTTCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCCACCAGAGAACAA--C
CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AATG-
GCCCCACCC-C-T-ATCTCCCTTTGCTGACCCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCATGCTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACGCACATGAA--------
>LTR7Y_chr22_2ltr_int_fr_936__chr22_3250275432503187_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAAGACCCTGC-CCTGCCTTAACTGAT-----------------------
---GACATTCCACCA-------------------------T-------------------
------------TGTGATTTGTTCCTGCCCCACC----------TTAACTGAGTGATTA-
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------CT--GTGAATTTCCTTCTCCTGG--------------
----CTC-----------AG-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCCACCAGAGAACAA--C
CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AATG-
GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTCGGACTCATCCGGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATGAAA-------
>LTR7Y_chr5_Sltr_1345__chr5_8018344880183901_+_
-GTCAGGCCTCTGAGCCTAAG-----------------------CCAAGCCATCTCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAAGGCCCTGC-TCTGCCTTAACTGAT-----------------------
---GACATTCCACCA-------------------------T-------------------
------------TGTGATTTGTTCCTGCCCCACC----------TTAACTGAGTGATTA-
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------CT--GTGAATTTCCTTCTCCTGG--------------
----CTC-----------AG-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCCACCAGAGAACAA--C
CCCCTTTGACTGTAATTTTCCATTACCTTCCTA-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACCGACGCGCATGAAA-------
>LTR7Y_chr20_2ltr_int_fr_896__chr20_1234550612345939__
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGATGTAACTGAAGAATCACAAAAGA
AGTGA-----AAAGGCCCTGC-CCCGCCTCAACTGAT-----------------------
---GACATTCCACCA-------------------------T-------------------
------------GGTGATTTGTTCCTGCCCCACC----------TTAACTGAGTGATTA-
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------CT--GCGAATTTCCTTCTCCTGG--------------
----CTC-----------AG-AAGCTCCCCAAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCCACCAGAGAACAA--C
CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AATG-
GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGTGTATGAA--------
>LTR7Y_chr4_2ltr_int_fr_1199__chr4_182814310182814743_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAACCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAAGGCCCTGC-CCCGCCTTAACTGAT-----------------------
---GACATTCCACCA-------------------------T-------------------
------------TGTGATTTGTTCCTGCCCCACC----------TTAACTGAGTGATTA-
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------CT--GCAAATTTCCTTCTCCTGG--------------
----CTC-----------AG-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCCTGTG--------------
---------------------------AC-CCCCACCCC-TGCCCACCAGAGAACAA--C
CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGATGCGCAAGAAA-------
>LTR7Y_chr22_Sltr_947__chr22_4516211045162544_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGTACG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAAGGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCA-------------------------T-------------------
------------CGTGATTTGTTCCTGCCCAACC----------TTAACTAAGTGATTA-
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------CT--GTGAATTTCCTTCTCCTGG--------------
----CTC-----------AG-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACCCC-TGCCCACCAGAGAACAA--C
CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCGCTGACTGTCTTTTTGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAATCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATGAAA-------
>LTR7Y_chr17_2ltr_int_fr_566__chr17_1197175611972189_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCT
CCTGTGAC---------------------------------------------TTGCACC
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAAGGCCCTGC-CCCGCCTTAACTGAT-----------------------
---GACATTCCACCA-------------------------T-------------------
------------TGTGATTTGTTCCTGCCCCAAC----------TTAACTGAATGATTA-
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------CT--GGGAATTTCCTTCTCCTGG--------------
----CTC-----------AG-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCCACCAGAGAACAA--C
CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAACCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCACATGAAA-------
>LTR7Y_chr19_2ltr_int_fr_678__chr19_4332895143329384__
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCATG
TATATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAAGGCCCTGC-CCCGCCTTATCTGAT-----------------------
---GACATTCCACCA-------------------------T-------------------
------------TGTGATTTGTTCTTGCCCCACC----------TTAACTGAGTGATTA-
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------CT--GTGAATTTCCTTTTCCTGG--------------
----CTC-----------AG-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCCACCAGAGAACAA--C
CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTACAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAACCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGCGCATGAA--------
>LTR7u2_chr16_60085447_60085879_h3k27ac_EncodeTxn_SOLO_KLF4_C_proto7y___chr16_6008544760085879___1431
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCATG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAAGGCCCTGC-CCCGCCTTAACTGAT-----------------------
---GACATTCCGCCA-------------------------T-------------------
------------TGTGATTTGTTCCTGCCCCACC----------TTAACTGAGTGATTA-
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------CT--GTGAATTTCCTTCTCCTGG--------------
----CTC-----------AG-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AT-CCCTGCCCC-TGCCCACCAGAGAACAA--C
CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTGTAA-----------AACA-
GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCACATG----------
>LTR7Y_chr2_2ltr_int_fr_756__chr2_1256968012570109_+_
-GTCAGGCCTCTGAACCCAAG-----------------------CCAAGCCATTGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAAGGCCCTGC-CCCGCCTTAACCGAT-----------------------
---GACATTCCACCA-------------------------T-------------------
------------TGTGATTTGTTCCTGCCCCACC----------TTAACTGAGTGATTA-
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------CT--GTGAATTTCCTTCTCCTGG--------------
----CTC-----------AG-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCTGCCCC-TGCCCAGCAGAGAACAA--C
CCCCTTTGACTATAATTTTCCATTACCTTCCCA-AATCTTATAA-----------AACG-
GCCCC--CC-C-T-ATCTCCCTTCGCTGAC--TCTTTTCAGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCCCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCTCATGAA--------
>LTR7Y_chr3_Sltr_1107__chr3_9441272394413156__
TGTCAGCCCTCTGAGCCCAAG-----------------------CCAAGCCATTGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTTAAGTAAGTGAAAAATCACAAAAGA
AGTGA-----AAAGGCCCTGC-CCCGCCTTAACTGAT-----------------------
---GACATTCCACCA-------------------------T-------------------
------------TGTGATTTGTTCCTGCCCCACC----------TTAACTGAGTGATTA-
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------CT--GTGAATTTCCTTCTCCTGG--------------
----CTC-----------AG-ATGCTCCCCCTC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CAACTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCCACCAGAAAACAA--C
CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGAACGCACATGAA--------
>LTR7Y_chr3_Sltr_955__chr3_112400427112400860__
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAAGGCCCTGC-CCCGCCTTAACTGAT-----------------------
---GACATTCCACCA-------------------------T-------------------
------------TGTGATTTGTTCCTGCCCCATC----------TTAACTGAGTGATTA-
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------CT--GTGAATTTCCTTCTCCTGG--------------
----CTC-----------AG-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCCACCAGAGAACAA--C
TCCCTTTGACTGTAATTTTCCATTACCTTCCTA-AATCCTATAA-----------AATG-
GCCCCACCC-C-T-GTCTCCCTTCGCTGACTCTCTTTT-GGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCTCATGAA--------
>LTR7Y_chr8_2ltr_int_fr_1626__chr8_9009543590095868__
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACACCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGGAGAATCACAAAAGA
AGTGA-----AAAGGCCCTGC-CCCGCCTTAACTGAT-----------------------
---GACATTCCACCA-------------------------T-------------------
------------TGTGATTTGTTCCTGCCCCACC----------TTAACTGAGTGATTA-
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------CT--GTGAATTTCCTTGTCCTGG--------------
----CTC-----------AG-AGGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CACTGCCCC-TGCCCACCAGAGAACAA--C
CCCCTTTGGCTGTAATTTTCCATTACCTTTCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTTGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGCACATGAA--------
>LTR7Y_chr1_2ltr_int_fr_55__chr1_221965924221966356_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTG----
----TGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AA-GACCCTGC-CCGACCTTAACTGAT-----------------------
---GACATTCCACCA-------------------------T-------------------
------------TGTGATTTGTTCCTGCCCCACC----------TTAACTGAGTGATTA-
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACG--------CT--GTGAATTTCCTTCTCCTGG--------------
----CTC-----------AG-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CAGCTTGTG--------------
---------------------------CC-CCCCGCCCC-TGCCCACCAGAGAACAA--C
CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCATTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGATGTGCATGAAA-------
>LTR7Y_chr8_2ltr_int_fr_1631__chr8_9717502997175463_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
--TATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTAA-----AAAGGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCA-------------------------T-------------------
------------TGTGATTTGTTCCTGCCCCACC----------TTAACTGAGTGATTA-
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------CT--GTGAATTTCCTTCTCCTGG--------------
----CTC-----------AG-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCCACCAGAGAACAA--C
CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTTGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--CAACCAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACGCGCATGAAA-------
>LTR7Y_chr1_Sltr_128__chr1_9465749194657924__
TGTCAGGCCTCTGAGCACAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAAGGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCA-------------------------T-------------------
------------TGTGATTTGTTCCTGCCCCACC----------TTCACTGAGTGATTA-
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------CT--GTGAATTTCCTTCTCCTGG--------------
----CTC-----------AG-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCCACCAGAGAACAA--C
CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATGAA--------
>LTR7Y_chr1_2ltr_int_fr_64__chr1_228947424228947857_+_
-GTCAGGCTTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCCCA
TATACGCAAAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCCCAAAAGA
AGTGA-----AAAGGCCCTGC-CCCTCCTTAACTGAT-----------------------
---GACATTCCACCA-------------------------T-------------------
------------TGTGATTTGTTCCTGCCCCACC----------TTAACTGAGTGATTA-
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------CT--GTGAATTTCCTTCTCCTGG--------------
----CTC-----------AG-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCTCGCCCC-TGCCCACCAGAGAACAA--C
CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCCCACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACATGCATGAAA-------
>LTR7Y_chr2_2ltr_int_fr_862__chr2_5811869858119130__
TGTTAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACA
TATATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAAGGCCCTGC-CCCGCCTTAACTGAT-----------------------
---GACATTCCACCA-------------------------C-------------------
------------TGTGATTTGTTCCTGCCCCACC----------TTAACTGAGTGATTA-
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------CT--GTGAATTTCCTTCTCCTGG--------------
----CTC-----------AG-AAGCTACCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCCACCAGAGAACAA--C
CTCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAACC-GCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGCTGCTCACACAAAGCCTG--TTT--GGTAGTCT
CTTCACACGGACACACATGAA--------
>LTR7Y_chr10_2ltr_int_fr_186__chr10_9029498390295414_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATAGCATCC
CCTGTGAC---------------------------------------------TTGCACA
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAAGGCCCTGC-CCCATCTTAACTGAC-----------------------
---GACATTCCACCA-------------------------T-------------------
------------TGTGATTTGTTCCTGCCCCACC----------TTAACTGAGTGATTA-
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------CT--GTGAATTTCCTTCTCCTGG--------------
----CTC-----------AG-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCCACCAGAGAACAA--C
CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG-
GCCCTACCC-C-T-ACCTCCCTTTGCTGACT--CTTTTCAGACTCAGTCCGCCTACACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
TTTCACACGGACGCGCATGAAA-------
>LTR7u2_chr1_37213390_37213816_h3k27ac_EncodeRepressed_SOLO_C_proto7y___chr1_3721339037213816___1426
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC
CCTGTGAC---------------------------------------------TTGTACA
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAAGGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCA-------------------------T-------------------
------------TGTGATTTGTTCCTGCCCCACC----------TTAACTGAGTGATTA-
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------CT--GTGAATTTCCTTC---TGG--------------
----CTC-----------AG-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CATCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCCACCAGAGAACAA--C
CCCCTTTGACTGTAATTTTCCATTACCTTCCCT-AATCCTATAA-----------AACA-
GCCCCACCC-C-T-ATCTCCCTTTGCTGACT--CTTTTCAGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAATAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
TTTCACACGGACGCACATG----------
>LTR7Y_chr4_Sltr_1227__chr4_6738399267384424__
TGTCACGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACA
TATATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAAGGCCCTGC-CCTGCCTTAACTGAT-----------------------
---GACATTCCACCA-------------------------T-------------------
------------TGTGATTTGTTCCTGCCCCACC----------TTAACTGAGTGATTA-
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------CT--GCGAATTTCCTTGTCCTGG--------------
----CTC-----------AG-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCA-TGCCCACCAGTGAACAA--C
CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C---ATCTCCCTTTGCTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGATCT
CTTCACACGGACGTGCATGAA--------
>LTR7Y_chr10_2ltr_int_fr_190__chr10_9673300596733411_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAAGGCCCTGC-CCCGCCTTAACTGAT-----------------------
---GACATTCCACCA-------------------------T-------------------
------------TGTGATTTGTTCCTGCCCCACC----------TTAACTGAGTGATTA-
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------CT--GTGAATTTCCTTCTCCTGG--------------
----CTA-----------AG-AAACTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCCCCCAGAGAACAA--C
CCCCTTTGACTGTCATTTTCCATTACCTTCCCA-AATCCTATAA-----------AAC--
-------------------------------------TCAGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGATGCGCATGAAA-------
>LTR7Y_chr6_2ltr_int_fr_1363__chr6_102292727102293160_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATATGCCCAGA------------------------------------------------
-----------------------------TGCCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAAGGCCCTGC-TCCGCCTTAACTGAT-----------------------
---GACATTCCACCA-------------------------T-------------------
------------TGTGATTTGTTCCTGCCCCACC----------TTAACTGAGTGATTA-
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------CT--GTGAATTTCCCTCTCCTGG--------------
----CTC-----------AG-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCCCCCAGAGAACAA--C
CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCCCCCTTTGCTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCATACGGACGTGCATGAAA-------
>LTR7Y_chr3_2ltr_int_fr_958__chr3_116110799116111228__
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAAGGCCCTGC-CCCGCCTTAACTGAT-----------------------
---GACATTCCACCA-------------------------T-------------------
------------TGTGATTTGTTCCTGCCCCACC----------TTAACTGAGTGATTA-
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------CT--GTGAATTTCCTTCTTCTGG--------------
----CTC-----------AG-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCCACCAGAGAAC-----
CCCTTTTGACTGTAATTTTCCATTACCTTCCTA-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-ACCTCCCTTCGCTGACTC--TTTTCCGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTTACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATGAA--------
>LTR7Y_chr5_2ltr_int_fr_1352__chr5_9282374292824175_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACA
CATATGCCCAGA------------------------------------------------
-----------------------------TGGCCCGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAAGGCCCTGC-CCCGCCTTAACTGAT-----------------------
---GACATTCCACCA-------------------------T-------------------
------------TGTGATTTGTTCCTGCCCCACC----------TTAACTGAGTGATTA-
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------CT--GTGAATTTCCTTCTCCTGG--------------
----CTC-----------AG-AAGCTCCTCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCCACCAGAGAACAA--C
CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACA-
GCCCCACCC-C-T-ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGTCCGCCTACACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGATGCACATGAAA-------
>LTR7Y_chr17_2ltr_int_fr_573__chr17_3418319134183623_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAAGGCCCTGC-CCCGCCTTAACTGAT-----------------------
---GACATTCCACCA-------------------------T-------------------
------------TGTGATTTGTTCCTGCCCCACC----------TTAACTGAGTGATTA-
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------CT--GTGAATTTCCTACTCCTGG--------------
----CTC-----------AG-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGAG--------------
---------------------------AC-CCCTGCCCC-TGCCCACCAAAGAACAA--C
CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
A-ATGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGTATGAAA-------
>LTR7Y_chr19_2ltr_int_fr_670__chr19_3616059236161023__
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCAACC
CCTGTGAC---------------------------------------------TTGCTCG
TATATGCCCAGA------------------------------------------------
-----------------------------CGGCCTGAAGTAACTGACGAATCACAAAAGA
AGTGA-----AAAGGCCCTGC-CCCGCATTAACTGAT-----------------------
---GACATTCCACCA-------------------------T-------------------
------------TGTGATTTGTTCCTGCCCCACC----------TTAACTGAGTGATTA-
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------CT--GTGAATTTCCTTCTCCTGG--------------
----CTC-----------AG-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACTTTGTG--------------
---------------------------AC-CCCTGCCCC-TGCCCACCAGAGA---A--C
CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCCGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGCGCATGAA--------
>LTR7Y_chrX_2ltr_int_fr_1785__chrX_35597283560161__
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAAGGCCCTGC-CCCGCCTTAACTGAT-----------------------
---GACATTCCACCA-------------------------T-------------------
------------TGTGATTTGTTCCTGCCCCACC----------TTAACTGAGTGATTA-
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------CT--GTGAATTTCCTTCTCCTGG--------------
----CTC-----------AG-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCCACCAGAGAACAA--C
CCCCTTTGACTGTAATTCTCCATTACCTTCCCA-AATCCTATAA-----------AACA-
GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCAAACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGTGCATGAA--------
>LTR7Y_chr11_Sltr_221__chr11_2387971723880161__
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTTTGCC---------------------------------------------TTGCACG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAAGGCCCTGC-CCCGCCTTAACTGAT-----------------------
---GACATTCCACCA-------------------------T-------------------
------------TGTGATTTGTTCCTGCCCCACC----------TTAACTGAGTGATTA-
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------CT--GTGAATTTCCTTCTCCTGG--------------
----ATC-----------AG-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCCACCAGAGAACAA--C
CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACA-
GCCCCACCC-C-T-ATCTTCCTTCGCTGACTCTCTTTTTGGACTCAGCCTGCCTGCACCC
AGGTGA-----AA--TAAACAGTCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATGAA--------
>LTR7Y_chr4_2ltr_int_fr_1212__chr4_2432328424323716_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACA
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAAGGCCCTGC-CCCGCCTTAACTGAT-----------------------
---GACATTCCACCA-------------------------T-------------------
------------TGTGATTTGTTCCTGCCCCACC----------TTAACTGAGTGATTA-
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------CC--ATGAGTTTCCTTCTCCTGG--------------
----CTC-----------AG-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCTGCCCC-TGCCCACCAGAGAACAA--C
CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AATG-
GCCCCACCC-C-T-ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGTGCATGAA--------
>LTR7Y_chr8_2ltr_int_fr_1614__chr8_7939125179391685__
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCA
CCTGTGAC---------------------------------------------TTGCACA
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAAGGCCCTGC-CCCGCCTTAACTGAT-----------------------
---GACATTCCACCA-------------------------T-------------------
------------TGTGATTTGTTCCTGCCCCACC----------TTAACTGAGTGATTA-
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------CT--GTGAATTTCCTTCTCCTGG--------------
----CTC-----------AG-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACCCC-TGCCCACCAGAGAACAA--C
CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCGCCTGCGCCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCCCACAAAGCCTG--TTT--GATGGTCT
CTTCACACGGACGTGCATGAA--------
>LTR7Y_chr13_2ltr_int_fr_431__chr13_9083956490839993_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATTC
CCTGTGAC---------------------------------------------TTGCACG
TATACACCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAAGGCCCTGC-CCCGCCTTAACTGAT-----------------------
---GACATTCCACCA-------------------------T-------------------
------------TGTGATTTGTTCCTGCCCCACC----------TTAACTGAGTGATTA-
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------CT--GTGAATTTCCTTCTCCTGG--------------
----CTC-----------AG-AAGCTCCCACAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCCACCAGAGAACAA--C
CCCCTT----TGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG-
ACCCCACCC-C-T-ATCTCCCTTCACTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC
AAGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACAAGGACACGCGTGAAA-------
>LTR7Y_chrX_2ltr_int_fr_1819__chrX_9227836192278794__
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC
CCTGTGAC---------------------------------------------TTGCACG
GATATGACCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAAGGCCCTGC-CCCGCCTTAACTGAT-----------------------
---GACATTCCACCA-------------------------T-------------------
------------TGTGATTTGTTCCTGCCCCACC----------TTAACTGAGTGATTA-
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------CT--GTGAATTTCCTTCTCCAGG--------------
----CTC-----------AG-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCCACCAGAGAACAA--C
CCCCTTTGACTGTAATTTTCCATTGCCTTCCCA-AATCCTATAA-----------AACG-
GCCCCATCC-C-T-ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
ACGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACACGCATGAA--------
>LTR7Y_chr6_2ltr_int_fr_1379__chr6_124890407124890840_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC
CCTGTGAC---------------------------------------------TTGCACC
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAAGGCCCTGC-CCCGCCTTAACTGAT-----------------------
---GACATTCCACCA-------------------------C-------------------
------------TGTGATTTGTTCCTGCCCCACC----------TTAACTGAGTGATTA-
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------CT--GTGAATTTCCTTCTCCTGG--------------
----CTC-----------AG-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACCCC-TGCCCACCAGAGAAAAA--C
CCCCTTTGACTATAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTCGTCT
CTTCACATGGACGCGCATGAAA-------
>LTR7Y_chr13_2ltr_int_fr_393__chr13_109265090109265520_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
ACTGA-----AAAGGCCCTGC-CCCGCCTTAACTGAT-----------------------
---GACATTCCACCA-------------------------T-------------------
------------GGTGATTTGTTCTTGCCCCACC----------TTAACTGAGTGATTA-
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------CT--GTGAATTTCCTTCTCCTGG--------------
----CTC-----------AG-CAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCCACCAGAGAACAA--C
CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C---ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCCCCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGT-GTCT
CTTCACATGGACTCGAGTGAA--------
>LTR7Y_chrX_Sltr_1790__chrX_4246860942469038_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACA
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAAGGCCCTGC-CCCGCCTTAACTGAT-----------------------
---GACATTCCACCA-------------------------T-------------------
------------TGTGATTTGTTCCTGCCCCACC----------TTAACTG----ATTA-
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------CT--GTGAATTTCCTTCTCCTGG--------------
----CTC-----------AG-AAGCTCTCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCTGCCCC-TGCCCACCAGAGAACAA--C
CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACTCGAGTGAAA-------
>LTR7Y_chrX_2ltr_int_fr_1741__chrX_119323040119323471__
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAAGGCCCTGC-CCCGCTTTAACTGAT-----------------------
---GACATTCCACCA-------------------------T-------------------
------------TGTGATTTGTTCCTGCCCCATC----------TTAACTGAGTGATTA-
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------CT--GTGAATTTCCTTCTCCTGG--------------
----CTC-----------AG-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCCACCAGAGAACAA--C
CCCCTTTGACT--AATTTTCCATTACCTTCCCA-AATCCTGTAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTA--TTT--GGTGGTCT
CTTCACACAGACTCGAGTGAA--------
>LTR7u2_chr3_124752578124758183_3428_ZNF534_k4me3_EncodeTxn_KLF4_GRO2of7__chr3_124757755124758183___1426
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAAGGCCCTGC-CCCGCCTTAACTGAT-----------------------
---GACATTCCACCA-------------------------T-------------------
------------TGTAATTTGTTCCTGCCCCATC----------TTAACTGAGTGATTA-
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------CT--GTGAATTTCCTTCTCCTGG--------------
----CTC-----------AG-AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AA-CCCCGCCCC-TGCCCACCAGAGAACAA--C
CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG-
GCCGCA---------TCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AAGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TCT--GGTTGTCT
CTTCACATGGACTCGAGTGA---------
>LTR7Y_chr4_2ltr_int_fr_1115__chr4_103559041103559474__
TGTCAGGCCTCTGAACCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCATG
TATATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAACGCCCTGC-CCCGCCTTAACTGAT-----------------------
---GACATTCCACCA-------------------------T-------------------
------------TGTGATTTGTTCCTGCCCCACC----------TTAGCTGAGTGATTA-
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------CT--GTGAATTTCCTTCTCCTGG--------------
----CTC-----------AG-AAGCTCCCCGAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCCACCAGAGAACAA--C
CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAGACAGCCATGTTGCTCACACAAAGCCTG--TTT--GCTGGTCT
CTTCACACTGACTCGAGTGAA--------
>LTR7Y_chr18_2ltr_int_fr_626__chr18_7332461573325047_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCATG
TATACGCCCAGA------------------------------------------------
-----------------------------TGTCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAAGGCCCTGC-CCCGCCTTAACTGAT-----------------------
---GACATTCCACCA-------------------------T-------------------
------------TGTGATTTGTTCCTGCCCCACC----------TTAACTGAGTGATTA-
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------CT--GTGAATTTCCTTCTCCTGG--------------
----CTC-----------AG-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACCCC-TGCCCACCAGAGAACAA--C
CTCCTTTGACTGTAATTTTCCATTAACTTCCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C---ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACAGGGACACGGATGAAA-------
>LTR7Y_chr3_2ltr_int_fr_950__chr3_104445341104445775__
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCA
CCTGTGAC---------------------------------------------TTGCATG
TATAAGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAAGGCCCTGC-CCCGCCTTAACTGAT-----------------------
---GACATTCCACCA-------------------------T-------------------
------------TGTGATTTGTTCCTGCCCCACC----------TTAACTGAGTGATTA-
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------CT--GTGAATTTCCTTCTCCTGA--------------
----CTC-----------AG-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACCCC-TGCCCACCAGAAAACAA--T
CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCCCTGACTCTCTTTTCGGACTCAGCCCGCCTGCTCCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
TTTCACACGGATACATATGAA--------
>LTR7Y_chr4_2ltr_int_fr_1136__chr4_126150114126150543__
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCTTCC
CCTGTGAC---------------------------------------------TTGCATG
TATAGGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAAGGCCCTGC-CCCGCCTCAACTGAT-----------------------
---GACATTCCACCA-------------------------T-------------------
------------TGTGATTTGTTCCTGCCCCACC----------TTAACTGAGTGATTA-
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------CT--GTGAATTTCCTTCTCCTGG--------------
----CTC-----------AG-AAGCTCCCCAAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------AAG----CACCTTGTG--------------
---------------------------AC-CCCCACCCC-TGCCCACCAGAGAAC-----
CCCCTTTGACTGTAATTTTCCATTACCTCCCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCACTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC
AA-TGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACGCGCATGAA--------
>LTR7Y_chrX_Sltr_1726__chrX_113988395113988824_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACGCTCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAAGGCCCTGC-CCCGCCTTAACTGAT-----------------------
---GACATTCCACCA-------------------------T-------------------
------------TGTGATTACTTCCTGCCCCACC----------TTAACTGAGTGATTA-
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------CT--GTGAATTTCCTTCTCCTGG--------------
----CTC-----------AG-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------AAG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCCACCAGAGAACAA--C
CCCCTTTGACT--AATTTTCCATTACCTTCCCA-AATCCTGTAA-----------AACG-
GCCCCACCC-C-T-AACTCCCTTCGCTGACT--CTTTTCAGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TCAACAGCCATTTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACAGGGACGTGCATGAAA-------
>LTR7Y_chr12_2ltr_int_fr_385__chr12_9574886295749284_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACA
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGAGA-----AAAGGCCCTGC-CCTGCCTTAACTGAT-----------------------
---GACATTCCACCA-------------------------T-------------------
------------TGTGATTTGTTCCTGCCCCACC---------------------ATTA-
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------CT--GTGAATTTCCTTCTCCTGG--------------
----CTC-----------AG-AAGCTCCCCAAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCTACCCC-TGCCCACCAGAAAACAA--C
CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGCGCATGAAA-------
>LTR7u2_chr1_65643207_65648034_3480_ZNF534_ZNF90_KAP1_EncodeRepressed_GRO5of7_GRO6of7_GRO7of7_C_proto7y___chr1_6564760365648034___1431
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACA
TATATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAATA
AGTGA-----AAAGGTCCTGC-CCCGCCTTAACTGAT-----------------------
---GACATTCCACCA-------------------------T-------------------
------------TGTGATTTGTTCTTGCCCCACC----------TTAACTGAGTGATTA-
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------CT--GTGAATTTCCTTCTCCTGG--------------
----CTC-----------AG-AAGCTCCCCAAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----GACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCCACCAGAGAACAA--C
CCCCTTTGACTGTAATTTTCCTTTACCTAACCA-AATCCTATAA-----------AACG-
GCCCCACCC-G-T-ATCTCCCTTCGCTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACAGAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGCGCATG----------
>LTR7Y_chr15_2ltr_int_fr_498__chr15_3523862935239062_+_
-GTCAGGCCTCTTAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAT---------------------------------------------TTGCACA
TACACACCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAAGGCCCTGC-CCCGCCTTAACTGAT-----------------------
---GACATTCCACCA-------------------------T-------------------
------------TGTGATGTGTTCCTGCCCCACT----------TTAACTGAGTGATTA-
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------CT--GTGAATTTCCTTCTCCTGG--------------
----CTC-----------AG-AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCTGCCCC-TGCCCACCAGAGAACAA--C
CCTCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGTGCATGAAA-------
>LTR7Y_chr2_Sltr_799__chr2_192130386192130819_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------TCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACA
TATACACCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAAGGCCCTGC-CCCGCCTTGACTGAT-----------------------
---GACACTCCACCA-------------------------T-------------------
------------TGTGATTTGTTCCTGCCCCACC----------TTAACTGAGCGATTA-
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------CT--GTGAATTTCCTTCTCCTGG--------------
----CTC-----------AG-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCCACCAGAGAACAA--C
CCTCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATGA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGTCTG--TTT--GGTGGTCT
CTTCACACGGACACGCATGAAA-------
>LTR7Y_chr18_2ltr_int_fr_606__chr18_2869844928698881__
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACA
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAAGCACAAAAGA
AGTGA-----AAAGGCCCTGT-CCCGCCTTAACTGAT-----------------------
---GACATTCCACCA-------------------------T-------------------
------------TATGATTTGTTCCTGCCCCACC----------TTAACTGAGTGATTA-
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------CT--GTGAATTTCCTTCTCCTGG--------------
----CTC-----------AG-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCTGCCCC-TGCCCACCAGAGAACAA--C
CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATGA-----------AACG-
GCCCCATTC-C-T-ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCG
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACTTGAGTGA---------
>LTR7Y_chr20_2ltr_int_fr_908__chr20_4009311040093543_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATTGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACGACCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTCAAGAATCACAAAAGA
AGTGA-----AAAGGCCCTGC-CCTGCCTTAACTGAT-----------------------
---GACATTCCACCA-------------------------T-------------------
------------TGTGATTTGTTCCTACCCCACA----------TTAACTGAGTGATTA-
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------CT--GTGAATTTCCTTCTCCTGG--------------
----CTC-----------AG-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-TCCTGCCCC-TGCCCACCAGAGAACAA--T
CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACACGCATGAAA-------
>LTR7Y_chr15_2ltr_int_fr_507__chr15_5343203053432463__
TGTCAGGCCTCTGAACCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCATG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGATCCACAAAAGA
AGTGA-----AAAGGCCCTGC-CCTGCCTTAACTGAT-----------------------
---GACATTCCACCA-------------------------T-------------------
------------TGTGATTTGTTCCTGCCCCACC----------TTAACTGAGGGATTA-
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------CT--GTGAATTTCCTTCTCCTGG--------------
----CTC-----------AG-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCCACCAGAGAACAA--C
CCCCTTTGACTGTAATTTTCCATTACCTTCCTA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCCCACGGATGCGCATGAA--------
>LTR7Y_chr5_2ltr_int_fr_1292__chr5_136544968136545393__
TGTCAGGTCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCATG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGACGTAACTGAAGAATCACAAAAGA
AGTGA-----AAAGGTCCTGC-CCCGCCTTAACTGAT-----------------------
---GACATTCCACCA-------------------------T-------------------
------------TGTGATTTGTTCCTGCCCCACC----------TTAACTGA----TTA-
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------CT--GTGAAT--CATTCTCCTGG--------------
----CTC-----------AG-AAGCTCCCCAAG---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------GC-CCCAGCCCC-TGCCCACCAGAGAACAA--C
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACA-
GCCCCACCC-T-T-AACTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACCTGTACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGATCT
CTTCACACGGACGCGCATG----------
>LTR7Y_chr1_2ltr_int_fr_26__chr1_183613210183613641_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACA
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAATA
AGTGA-----AAAGGCCCTGC-CCCGCCTTAACTGAT-----------------------
---GACATTCCACCA-------------------------T-------------------
------------TGTGATTTGTTCCTGCCCCACC----------TTAACTGAGTGATTA-
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------CT--GTGAATTTCCTTCTCCTGG--------------
----CTC-----------AG-AAGCTCCCCAAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCTGCCCC-TGCCCACCAGAGAACAA--C
CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATTTCCCTTCACTGACTC--TTTTTGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACACGTGTGA---------
>LTR7u2_chr1_68386004_68391992_3424_ZNF534_ZNF90_KAP1_EncodeTxn_KLF4_GRO5of7_GRO6of7_GRO7of7_proto7y____chr1_6838600468386437____1431
-GTCAGGCCTCTGAGCCCAAG-----------------------TCAAACCATCGCATCC
CCTGTGAC---------------------------------------------TTGCATG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAAGGCCCTGC-CCCGCCTTAACTGAT-----------------------
---GACATTCCACCA-------------------------T-------------------
------------TGTGATTTGTTCCTGCCCCACC----------TTAACTGAGTGATTA-
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------CT--GTGAATTTCCTTCTCCTGG--------------
----CTC-----------AG-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCCACCAGAGAACAA--C
CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------GACG-
GCCCCACCC-T-T-ATCTCCCTTCGCTGACTC--TTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGAGGCGCATGA---------
>LTR7u2_chr8_99943695_99949609_3518_ZNF534_ZNF90_KAP1_EncodeRepressed_FOXP1_KLF4_proto7y____chr8_9994369599944123____1428
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACACCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAA---A
AGTGA-----AAAGGACCTGC-CCCGCCTTAACTGAT-----------------------
---GACATTCCACCA-------------------------T-------------------
------------TGTGATTTGTTCCTGCCCCACC----------TTAACTGAGTGATTA-
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------CT--GTGAATTTCCTTCTCCTGG--------------
----CTC-----------AG-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCCACCAGAGAACAA--C
CCCCTTTGACTGTAAGTTTCCATTACCTTCCCA-AATCCTATAA-----------AACA-
GCCCCACCT-T-T-ATCTCCCTTCGCTGACTC--TTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACGCGCATGA---------
>LTR7Y_chr6_2ltr_int_fr_1402__chr6_144923175144923606_+_
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCTATCGCATCC
CCTGTGAC---------------------------------------------TTGCACA
TATATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAAGGCCCTGC-CCCGCCTTAACTGAT-----------------------
---GACATTCCACCA-------------------------T-------------------
------------TGTGATTTGTTCCTGCCCCACC----------TTAACTGAGTGATTA-
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------CT--GTGAATTTCCTTCTCCTGG--------------
----CTC-----------AG-AAGCTTCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TACCCACCAGAGAACAA--C
CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCACTGACTC--TTTTCAGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--CGTGGTCT
CTTCACACTGACGTGCATGA---------
>LTR7u2_chr1_230601216_230609094_4759_ZNF534_ZNF90_KAP1_weakenh_KLF4_proto7y____chr1_230601216230601646____1430
-GTCAGGTCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACA
TATATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAAGGCCCTGC-CCTGCCTTAACTGAT-----------------------
---GACATTCCACCA-------------------------T-------------------
------------TGTGATTTGTTCCTGCCCCACC----------TTAACTGAGTGATTA-
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------CT--GTGAATTTCCTTCTCCTGG--------------
----CTC-----------AG-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCCACCAGAGAACAA--C
CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C---ATCTCCCTTTGCTGACTC--TTTTCAGACTCAGACCACCTGCACCC
AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGCTCT
CTTCACATGGACATGCATGA---------
>LTR7u2_chr9_104870665_104871097_weakenh_SOLO_KLF4_C_proto7y___chr9_104870665104871097___1431
TGTCAGGCCTCTAAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACA
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAAGGCCCTGC-CTCGCCTTAACTGAT-----------------------
---GACGTTCCACCA-------------------------T-------------------
------------TGTGATTTGTTCCTGCCCCACC----------TTAACTGAGTGATTA-
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------CT--GTGAATTTCCTTCTCCTGG--------------
----CTC-----------AG-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCCACCAGAGAACAA--C
CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTTGCTGACTC--TTTTCGGACTCAGCCCACCTGCAGCC
AGGTGA-----AA--AAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACGCACATG----------
>LTR7u2_chr1_233688773_233689204_EncodeTxn_SOLO_KLF4_C_proto7y___chr1_233688773233689204___1431
TGTCAGGCCTTTGAGCCCAAG-----------------------CCAAGCCATTGCATCC
CCTGTGAC---------------------------------------------TTGCACA
TATACACCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAAGGCCCTGC-CCCGCCTTAACTGAT-----------------------
---GACATTCCACCA-------------------------T-------------------
------------TGTGATTTGTTCCTGCCCCACC----------TTAACTGAGTGATTA-
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------CT--GTGAATTTCCTTCTCCCGG--------------
----CTC-----------AA-AAGCTCCCTCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCCACCAGAGAACAA--C
CTCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCGCTGACTC--TTTTCAGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACGTACATA----------
>LTR7u2_chr2_80875799_80880161_4311_ZNF534_k4me3_EncodeRepressed_KLF4_GRO3of7_C_proto7y___chr2_8087979680880161___1365
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGTATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAAAGCCCTGC-CCCGCCTTAACTGAT-----------------------
---GACATTCCACCA-------------------------T-------------------
------------TGTGATTTGTTCCTGCCCCACC----------TTAACTGAGTGATTA-
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------CT--GTGAATTTCCTTCTCCTGG--------------
----CTC-----------CG-AAGCTCCCGCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCCAC-------------
------------------------------------------------------------
--------C-C-C-ATCTCCCTTCGCTGACTC--TTTTTGGACTCAGCCCACCTGTACCC
AGGTGA-----AA--TAAACAGCTTTATTGCTCGCACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGTGCATG----------
>LTR7u2_chr4_135167435_135173118_3494_ZNF534_ZNF90_KAP1_EncodeTxn_GRO5of7_GRO6of7_GRO7of7_C_proto7y___chr4_135172689135173118___1429
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC
C--GTGAC---------------------------------------------TTGCACG
TATATGCCCAGA------------------------------------------------
-----------------------------TAGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAAGGCCCTGC-CCCGACTTAACTGAT-----------------------
---GACATTCCACCA-------------------------T-------------------
------------TGTGATTTGTACCTGCCCCACC----------TTAACTGAGTGATTA-
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------CT--GTGAATTTCCTTCTCCTGG--------------
----CTC-----------AG-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCCACCAGAGAACAA--C
CCCCTTTGACTGTCATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG-
GCCCCTCCC-C-T-ATCTCCCTTCATTGACTC--TTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCTTTATTGTTCACACAAAGCCTG--TTT--GGTGGTCT
CTCCACACGGACGTGCATG----------
>LTR7u2_chr3_81747553_81747984_h3k27ac_EncodeRepressed_SOLO_proto7y____chr3_8174755381747984____1431
-GTCAGGTCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAAGGCCCTGC-CCCGCCTTAGCTGAT-----------------------
---GACATTCCACCA-------------------------T-------------------
------------TGTGATTTGTTCCTGGCCCACC----------TTAACTGAGTGATTA-
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------CT--TTGAATTTCCTTCTCCTGG--------------
----CTC-----------AG-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCCACCAGAGAACAA--C
CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTCGCTGACTC--TTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATGA---------
>LTR7u2_chr8_135767191_135773012_3585_ZNF534_KAP1_EncodeRepressed_KLF4_C_proto7y___chr8_135772580135773012___1431
TGTCAGGCCTCTGAGTCCAAG-----------------------CCAAGCCATTGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATATACCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAAGATCCTGC-CCCGCCTTAACTGAT-----------------------
---GACATTCCACCA-------------------------T-------------------
------------TGTGATTTGTTCCTGCCCCACC----------TTAACTGAGTGATTA-
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------CT--GTGAATTTCCTTCTCCTGG--------------
----CTC-----------AG-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCTGCCCC-TGCCCACCAGAGAACAA--C
CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AATG-
GCCCCACCC-C---ATCTCCCTTCGCTGACTC--TTTCCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGATGCGCATGA---------
>LTR7Y_chr6_2ltr_int_fr_1461__chr6_8135072781351160__
TGACAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC
CCTGTGAC---------------------------------------------TTGCATG
TATATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAAGGCCCTGC-CCTGCCTTAACTGAT-----------------------
---GACATTCCACCA-------------------------T-------------------
------------TGTGATTTGTTCCTGCCCCACC----------TTAACTGAGTGACTA-
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------CT--GTGAATTTCCTTCTCCTGG--------------
----CTC-----------AG-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCCACCAGAAAACAA--C
CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AACCCTATAA-----------AATG-
GCCCCACCC-C-T-ATCTCCCTTCGCTGACTC--TTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATGAA--------
>LTR7u2_chr6_6027810_6033600_3360_ZNF534_EncodeRepressed_KLF4_wanghigh_chimeric_GRO5of7_GRO6of7_GRO7of7_C_proto7y___chr6_60331876033600___1413
----------------CCAGG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCATG
TATATGCCCAGA------------------------------------------------
-----------------------------TGGTCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAAGGACCTGC-CCCGCCTTAACTGAT-----------------------
---GACATTCCACCA-------------------------T-------------------
------------TGTGATTTGTTCCTGCCCCACC----------TTAACTGAGTGATTA-
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAATTTCCTTCTCCTGG--------------
----CTC-----------AG-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACCCC-TGCCCACCAGAGAACAA--C
CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCGCTGACTC--TTTTCGGACTCAGCCCACCTGCACCC
AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCATATGGACGCGCATG----------
>LTR7u2_chr4_132492030_132492460_h3k27ac_enh_SOLO_proto7y____chr4_132492030132492460____1429
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCATG
TATACGACCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAAGGCCCTGC-CCGGCCTTAACTGAT-----------------------
---GACATTCCACCA-------------------------T-------------------
------------TGTGATTTGTTCCTGCCCCACC----------TTAACTGAGGGATTA-
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------CT--GTGAATTTCCTTCTCCTGG--------------
----CTC-----------AG-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCCACCAGAGAACAA--C
CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-GTCTCCCTTCCCTGACTC--TTTTCGGACTCAGCCCACCTGCACCT
AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTTT
CTTCACACGGACGCGAATGA---------
>LTR7u2_chr5_100984292_100990224_3319_ZNF534_ZNF90_KAP1_EncodeRepressed_KLF4_GRO5of7_GRO6of7_GRO7of7_C_proto7y___chr5_100989793100990224___1431
TGTCAGGGCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCATG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAAGGCCCTGC-CCTGCCTTAATTGAT-----------------------
---GACATTCCACCA-------------------------T-------------------
------------TGTGATTTGTTCCTGCCCCACC----------TTAACTGAGTGATTA-
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------CT--GTGAATTTCCTTCTCCTGG--------------
----CTC-----------AG-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCCACCAGAGAACAA--C
CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AATG-
GCCCCACCC-C-T-ATCTCCCTTGGCTGACTC--TTTTCAGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGCGCATG----------
>LTR7u2_chr5_117046415_117052246_3142_ZNF534_k4me3_EncodeRepressed_GRO3of7_C_proto7y___chr5_117051815117052246___1431
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATAGGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACCGAAGAATCACAAAAGA
AGTGA-----AAAGGCCCTGC-CCCACCTTAAATGAT-----------------------
---GACATTCCACCA-------------------------T-------------------
------------TGTGATTTGTTCCTGCCCCACC----------TTAACTGAGTGATTA-
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------CCC--------CT--GTCAATTTCCTTCTTCTGG--------------
----CTC-----------AG-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCTCCCC-TGCCCACCAGAGAACAA--C
CCCCTTTGACTATAATTTTCCATTACCTTCCCA-AATCCTGTAA-----------AACA-
GCCCCACCC-C-T-ATCTCCCTTCGCTGACTC--TTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--CAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGCACATG----------
>LTR7u2_chr2_16791945_16797703_4656_ZNF534_EncodeRepressed_KLF4_GRO4of7_C_proto7y___chr2_1679727216797703___1431
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACT
TATAGGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTCA-----AAAGGCCCTGC-CCCGCCTTAACTGAT-----------------------
---GACATTCCACCA-------------------------C-------------------
------------TGTGATTTGTTCCTACCCCAAC----------TTAACTGAGTGATTA-
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAATTTCCTTCTTCTGG--------------
----CTC-----------AG-AAGCTCCTCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCCACCAGAGAACAA--C
CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCGCTGACTC--TTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGATGCTCATG----------
>LTR7u2_chr19_39493404_39493821_SOLO_proto7y____chr19_3949340439493821____1416
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGCC---------------------------------------------TTGCACA
TATACACCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAAGGCCCTGC-CCCGCCTTAACTGAT-----------------------
---GACATTCCACCA-------------------------T-------------------
------------TGTGATTTGTTCCTGCCCCACC----------TTAACTGAGTGATTA-
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------CT--GCAAATTTCCTTCTCCTGG--------------
----CTC-----------AG-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCG--------------
-CCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATACTATAA-----------AACA-
GCCCCACCC-C-T-ATCTCCCTTCGCTGACTC--TTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATGA---------
>LTR7u2_chr13_66141332_66147036_3391_ZNF534_EncodeRepressed_GRO5of7_GRO6of7_GRO7of7_C_proto7y___chr13_6614660766147036___1429
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCGCCTTAACTGAT-----------------------
---GACATTCCACCA-------------------------T-------------------
------------TGTGATTTGTTCCTGCCCCACC----------TTAACTGAATGATTA-
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------CT--GCGAATTTCCTTCTCCTGG--------------
----CTC-----------AG-AAACTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACCTC-TGCCCACCAGAGAACAA--C
CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTTGCTGACTC--TTTTCAGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACTGATGTGCATG----------
>LTR7up1_chr8_1801298_1801747_h3k27ac_enh_SOLO_KLF4_NANOG_44108_7up_7up_phylo____chr8_18012981801747____1449
--TCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCTGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACT--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CATCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTTTGTCTGTAATTTTCCTTTACCTACGCA-AATCCTATAA-----------AACG-
GTCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA---AA----TAAACAGCCATTTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATGA---------
>LTR7up1_chr1_232118115_232123945_4894_transcribed_ZNF534_ZNF90_KAP1_k4me3_TSS_FOXP1_KLF4_NANOG_44108_SMAD11_SOX2_TCF4_7up_wanghigh_GRO1of7_7up_phylo____chr1_232118115232118565____1450
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACA
TATATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTGCACCACAAAAGAAGTGTAAATGGCTGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCGCTAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACA-
GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTGAGCCCGCTTGCACCC
AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATGA---------
>LTR7up1_chr6_90670205_90675442_3469_1_k4me3_EncodeTxn_KLF4_NANOG_44108_SMAD11_SOX2_TCF4_7up_C_7up_phylo___chr6_9067499290675442___1450
TGTCAGGCCTCTGAGCCCAAA-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTGAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAGTGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCGACTCC-TGCCCGCCAGAGAACAA-AC
TCCCTTTGACTGTAATTTTCCTTTACCTACACA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTCCCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--AGTGGTCT
CTTCACACGGACGCGCATG----------
>LTR7up1_chr4_16997747_17003925_3437_ZNF534_KAP1_k4me3_EncodeTxn_KLF4_MED1_NANOG_44108_SMAD11_SOX2_TCF4_7up_GRO1of7_7up_phylo____chr4_1699774716998198____1448
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
C--GTGAC---------------------------------------------TTGCACG
TATATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CTCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCTTTCACTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC
AGGTTA---AA----TAAACAGCCATGTTGCTCACGCAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATGA---------
>LTR7up1_chr6_6036099_6036548_EncodeRepressed_SOLO_KLF4_NANOG_7up_chimeric_C_7up_phylo___chr6_60360996036548___1449
TGTCAGGCCTCTGAGGCCAAG-----------------------CCAAGTCATCGCATCC
CCTGTGAC---------------------------------------------TTGCGCG
TATATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCATGG--------------
----CTCACCCTGGCTCAAA-AA-CACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTGCCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTCACTGACTCTCTTTTCAGACTCAGCCTGCCTGCACCC
AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACACGCATG----------
>LTR7up1_chrX_98524246_98530070_4863_ZNF534_ZNF90_KAP1_EncodeTxn_FOXP1_KLF4_NANOG_TCF4_FOXA1_7up_C_7up_phylo___chrX_9852962098530070___1450
TGTCAGGCCTCCGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GATATTCCACCACAAAAGAAGTGCAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGTGCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCCCCCTTCACTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA---AA----TAAATAGCCATGTTGCTCACAAAAAGCCTG--TTT--AGTGGTCT
CTTCACACGGACACGCATG----------
>LTR7up1_chrX_114601272_114607242_3469_ZNF534_KAP1_k4me3_EncodeTxn_KLF4_MED1_NANOG_44108_TCF4_7up_wanghigh_C_7up_phylo___chrX_114606794114607242___1448
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATTGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATAAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----ATCATCCTGGCTCAA--AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-C-ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCACTTGCACCC
AGGTGA---AA----TA-ACAGCCATGTTGCTCACACGAAGCCTG--TTT--AGTGGTCT
CTTCACACGGACACACATG----------
>LTR7up1_chr6_131338800_131344564_3249_ZNF534_ZNF90_KAP1_k27ac_EncodeTxn_KLF4_NANOG_44108_TCF4_FOXA1_7up_GRO1of7_7up_phylo____chr6_131338800131339250____1450
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATAAGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCATCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCAGTTCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AGGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACA-
GCCCCACCC-T-T-ATCTCCCTTCACTGACTCTCTTTTCTGACTCAGCCTACCTGCACCC
AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACACGCATGA---------
>LTR7up1_chr12_11462169_11468020_3219_ZNF534_ZNF90_KAP1_EncodeTxn_KLF4_NANOG_TCF4_FOXA1_7up_C_7up_phylo___chr12_1146757111468020___1449
TGTCAGGCCTCTGAGCTGAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACACCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACTGCAAAAGAAATATAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAC-ACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-TCCCACTCC-TGCCCGCCAGATAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACA-
GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCCGACTCAGCCTGCCTGCACCC
AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTC--TTT--GGTGGTCT
CTTCACATGGACGCGCATG----------
>LTR7up1_chr6_131323296_131329137_3112_ZNF534_ZNF90_KAP1_k4me3_EncodeTxn_FOXP1_KLF4_NANOG_44108_TCF4_7up_GRO1of7_7up_phylo____chr6_131323296131323746____1450
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATAAGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACTACAAAAGAAGTGAAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AACCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTTCG--------------
---------------------------AC-CCCGACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACA-
GCCCCACCC-T-T-ATCTCCCTTCACTGACTCTCTTTTCCGACTCAGCCTACCTGCACCC
AGGTGA---AA----TAAACAGCCATGTTGCTCACGCAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATGA---------
>LTR7up1_chr7_122816729_122822998_3415_ZNF534_ZNF90_KAP1_EncodeTxn_KLF4_NANOG_FOXA1_7up_7up_phylo____chr7_122816729122817176____1447
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCATAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCGATCCT-------------------
------------TG------------------CC----------TTAA----ATGATGGC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAA----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAAC----C
CCCCTTTGACTGTAATTTTCCTTTACCTACTCA-AATCCTATAA-----------AACG-
GCCCCACCC-A-T-ATCTCCCTTCGCTAACTCTCTTTTCAGACTCAGCCCGCCTGCACCC
AGGTGA---AA----TAAGCAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCAAACGGACGCACATGA---------
>LTR7up1_chr6_142015666_142021782_3343_ZNF534_ZNF90_KAP1_k4me3_TSSflanking_KLF4_NANOG_7up_wanghigh_GRO1of7_7up_phylo____chr6_142015666142016117____1450
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCACCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATATCCCCAGA------------------------------------------------
-----------------------------TGGCCTGATGTAACTGAAGAATCACAAAAGA
AGTGA-----ACATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTAG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCTA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC
AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCACATGA---------
>LTR7up1_chr8_7402290_7408174_3225_ZNF534_KAP1_weakenh_KLF4_NANOG_TCF4_7up_GRO5of7_GRO6of7_GRO7of7_7up_phylo____chr8_74022907402740____1450
-GTCAGGCGTCTCAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCATG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACAGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGACGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGTCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCA--------------
---------------------------AC-CCCTACTCC-TGCCCGCCAGAGAACAA-AC
CCCTTTTGACTGTATTTTTCCTTTACCTACCCA-AATCCTATAA-----------AACA-
GCCCCACAC-T-T-TTCTCCCTTCACTGACTCCCTTTTTGGATTCAGCCCACCTGCACTC
AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCACATGA---------
>LTR7up1_chr8_7903419_7909304_3197_ZNF534_KAP1_EncodeRepressed_KLF4_NANOG_7up_GRO5of7_GRO6of7_GRO7of7_C_7up_phylo___chr8_79088547909304___1450
TGTCAGGCGTCTCAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCATG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACAGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGACGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGTCTCAAA-AAACACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCA--------------
---------------------------AC-CCCTACTCC-TGCCCGCCAGAGAACAA-AC
CCCTTTTGACTGTATTTTTCCTTTACCTACCCA-AATCCTATAA-----------AACA-
GCCCCACAC-T-T-TTCTCCCTTCACTGACTCCCTTTTTGGATTCAGCCCACCTGCACTC
AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCACATG----------
>LTR7up1_chr13_90848573_90854278_3504_ZNF534_k4me3_EncodeTxn_FOXP1_KLF4_NANOG_TCF4_FOXA1_7up_GRO3of7_C_7up_phylo___chr13_9085383190854278___1447
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAG---TGTAAATAGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGACGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAGA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AA
CCCCTTTGACTGTAATTTTCCTTTACCTTCCCA-AAACCTATAA-----------AACA-
GTGCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTCTTTGGACTCAGCCCGCCTGCACCC
AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACGCCGACGCACATG----------
>LTR7up1_chr20_12753820_12759634_3666_transcribed_ZNF534_k4me3_enh_KLF4_NANOG_44108_SMAD11_TCF4_7up_wanghigh_GRO1of7_7up_phylo____chr20_1275382012754274____1450
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC
CCTGTGAC---------------------------------------------TTGCACG
TATAAGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCTACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGCCTGGTTCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CACATCCTGGCTCAAA-AAGCACCCCCAA---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCATTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTTGGACTCAGCCCACCTGCACCC
AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCACATGA---------
>LTR7up1_chr3_46246275_46252065_4913_ZNF534_ZNF90_KAP1_EncodeRepressed_KLF4_NANOG_7up_C_7up_phylo___chr3_4625160846252065___1450
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATTGCATCC
CCTGTGAC---------------------------------------------TTGCACA
TATATGCCCAGA------------------------------------------------
-----------------------------TGTCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACACTCCACCACAAAAGAAGTGTAAATGGCTGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTAG--------------
----CTCATCCTGGCTAGGA-AATCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAA-AC
CCCCTTTGACTGCAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACA-
GCCCCACCC-T-T-ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACTC
AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACAAGGATGCACATG----------
>LTR7up1_chr4_166716125_166722054_3445_ZNF534_KAP1_enh_FOXP1_KLF4_NANOG_44108_SOX2_TCF4_7up_GRO1of7_7up_phylo____chr4_166716125166716575____1450
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAGGCCATTGCATCC
CCTGTGAC---------------------------------------------TTGCATG
TATAAGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCTGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCTACTCC-TGCCTGCCAGAGAACAA-AC
CCCCTTTGACTGCAATTTTCCTTTACCTGCCCA-AATCCTATAA-----------AATG-
GTCCCACCC-T-T-ATCTCCCTTTGCTGACTCTCTTTTTGGACTCAGCCTGCCTGCACTC
AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATGA---------
>LTR7up1_chr13_88512819_88518743_3559_ZNF534_KAP1_EncodeRepressed_KLF4_NANOG_44108_SOX2_TCF4_7up_GRO3of7_C_7up_phylo___chr13_8851829388518743___1450
TGTAGGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCAGT
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTATAAATGGCTGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TG--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TCCCTGCCAGAGAACAA-AT
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACA-
GCCCCACCC-T-T-ATCTCCCTTCGTTGACTCTCTTTTTGGACTCAGCCGGCCTGCACCC
AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCACATG----------
>LTR7up1_chr8_68972944_68978769_3408_ZNF534_KAP1_EncodeRepressed_FOXP1_KLF4_NANOG_7up_7up_phylo____chr8_6897294468973429____1450
-GTCGGGCCTCTGAGCCCAAG-----------------------CCAAGCCATTGCATCC
TCTGTGAC---------------------------------------------TTGCACG
TATATGCCCAGA------------------------------------------------
-----------------------------TGGTCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATGTGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCTGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTTGGACTCAGCCTGCCTGCACCC
AGGTGA---AA----TCAACAGCCATGGTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATGA---------
>LTR7up1_chr1_232229629_232234999_3450_ZNF534_KAP1_EncodeTxn_KLF4_NANOG_FOXA1_7up_GRO3of7_C_7up_phylo___chr1_232234550232234999___1449
TGTCAGGCCTCTGAGCCCAAG-----------------------ACAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCAACACAAAAGAAGTGTAAATGGCTGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AACCACCCTCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACA-
GCCCCATCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTTGGACTCAGCCTGCCTGCACCC
AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGT-GTCT
CTTCACACGGACGCGCATG----------
>LTR7up1_chr13_55654931_55660802_3446_ZNF534_KAP1_k4me3_TSS_FOXP1_KLF4_NANOG_44108_SMAD11_SOX2_TCF4_FOXA1_7up_wanghigh_GRO1of7_C_7up_phylo___chr13_5566035755660802___1445
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATTGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATATACCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCTGATCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACTTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAA------
CCCCCTTGACTGTAATTTTCCTTTACCTACCTA-AATCCTATAA-----------AACG-
GCCCCATCC-T-T-ATCTCCCTTCACTGACTCTCTTTCTGGACTCAGCCCACCTGCACCC
AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACACGCATG----------
>LTR7up1_chr10_6629579_6635541_3454_ZNF534_KAP1_EncodeTxn_KLF4_NANOG_FOXA1_7up_C_7up_phylo___chr10_66350936635541___1448
TGTCACGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
--TATACCCAGA------------------------------------------------
-----------------------------TGACCTGAAGTAACTGAAGAATCATAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCTGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTAG--------------
----CTCATCCTGACTCAAA-AAGCACCTCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GGG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C-C-ATCTCCCTTCACTGACTCTATTTTTGGACTCAGCCTGCCTGCGCCC
AGGTGA---AA----TAAACAGCCATATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACACGCATG----------
>LTR7up1_chr7_24396245_24401985_4981_transcribed_ZNF534_k4me3_weakenh_FOXP1_KLF4_MED1_NANOG_44108_SOX2_FOXA1_7up_wanghigh_GRO1of7_7up_phylo____chr7_2439624524396697____1450
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCCGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACGTACCCA-AATCCTATAA-----------AACG-
GCCCCACCT-T-T-ATCTGCCTTCCCTGACTGTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA---AA----TAAACAGCCACGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATGA---------
>LTR7up1_chr2_7108636071090997_3591_ZNF534_EncodeTxn_KLF4_NANOG_FOXA1_7up_chimeric_GRO2of7__chr2_7109054771090997___1450
TGACAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACCGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCAACTTAACTGAT-----------------------
---GACATGCCACCACAAAAGAAGTGTAATTGGCCAGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAACACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAA-AC
CCCCTTTGAGTGTAGTTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCTCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATG----------
>LTR7up1_chr1_238379439_238379888_h3k27ac_enh_SOLO_KLF4_NANOG_44108_TCF4_7up_C_7up_phylo___chr1_238379439238379888___1449
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATTCGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCTCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAA--AAACACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAA-AC
TCCCTTTGAGTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATG----------
>LTR7up1_chrX_4891614_4897331_3482_ZNF534_EncodeRepressed_FOXP1_KLF4_NANOG_44108_TCF4_7up_7up_phylo____chrX_48916144892064____1450
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACA
TATATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCA--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGGGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTTCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATGA---------
>LTR7up1_chr12_103222116_103222567_EncodeTxn_SOLO_KLF4_NANOG_SOX2_7up_C_7up_phylo___chr12_103222116103222567___1450
TGTCAGGCCTCTGAGCTCAAG-----------------------CCAAGCTATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TGTATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACTACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----GTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCA--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTTGTACTCAGCCCGCCTGCACCC
AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCGTG--TTT--GGTGGTCT
CTTCACAGGGACGCGCATG----------
>LTR7up1_chr3_115793483_115799166_3515_ZNF534_k4me3_EncodeRepressed_FOXP1_KLF4_NANOG_7up_wanghigh_GRO3of7_C_7up_phylo___chr3_115798717115799166___1449
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATTGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCTCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCTGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AA-CACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCA--------------
---------------------------AC-CCCTACTCC-TGCCCACCAGAGAACAA-AC
CCTCTTTGACTGTAATCTTCCTTTACCTACCCA-AATCCTATAA-----------AATG-
GCCCCACCC-T-T-ATATCCCTTCCCTGACTCTCTTTTCGAACTCAGCCCGCCTGCACCC
AGGTGA---AA----TAAACAGCCATGTTGTTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACGCGCATG----------
>LTR7up1_chr9_115839178_115844929_3491_ZNF534_KAP1_k4me3_EncodeRepressed_KLF4_NANOG_44108_7up_GRO4of7_C_7up_phylo___chr9_115844479115844929___1450
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC
CCTGTGAC---------------------------------------------TTGCACA
TATATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCTGGTCCT-------------------
------------TG------------------CT----------TTAA----GGGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCA--------------
---------------------------TC-CCCTACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTCACTGACTCTCTTTTCGCATTCAGCCCGCCTGCACCC
AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGAAGCGCATG----------
>LTR7up1_chr1_72980446_72985490_3299_ZNF534_KAP1_k4me3_KLF4_NANOG_44108_FOXA1_7up_GRO4of7_C_7up_phylo___chr1_7298504172985490___1449
TGTCAGGCCTCTGAGCCCAGG-----------------------CCAAGCCATCACATCC
CCTGTGAC---------------------------------------------TTGCACA
TATATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
GTT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCAC-CCCAT---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TCCCCGCCACAGAACAA-AC
CCCCTTTGACTGTCATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATTTCCCTTCGCGGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC
AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGTGCATG----------
>LTR7up1_chr5_106978588_106984086_3273_transcribed_k4me3_TSS_KLF4_NANOG_44108_SOX2_TCF4_FOXA1_7up_wanghigh_GRO1of7_7up_phylo____chr5_106978588106979038____1448
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCTCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCTTGGCTCAAA-AAGCAACCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCA--------------
---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTACAA-----------AACG-
GCCCCATCC-T-T-ATCTCCCATCGCTGACTCTCTTTTCCGACTCAGCCCGCCTGCACCC
AGGTGA---AA----TAAA--GTCATGTTGCTCATACAAAGCCCG--TTT--GGTGGTCT
CTTCACACGGACGCGCATGA---------
>LTR7up1_chr5_153449687_153455430_3384_ZNF534_EncodeTxn_FOXP1_KLF4_NANOG_7up_C_7up_phylo___chr5_153454980153455430___1450
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCTATCGCATCC
TCTGTGAC---------------------------------------------TTGCACG
TATATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATGTGTCCTGC-CCCAACTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTCTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTGTAA-----------AACG-
GCCTCATCC-T-T-ATCTCCCTTTGCTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC
AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATG----------
>LTR7up1_chr10_95231193_95231643_h3k27ac_enh_SOLO_KLF4_MED1_NANOG_44108_SMAD11_TCF4_7up_7up_phylo____chr10_9523119395231643____1450
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TAAAAGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AT-CCCCACTCC-TGCCCACCAGAGAACCA-AC
CCCCTTTGATTGTAATTTTCCTTTACCTACCCA-AATCCTGTAA-----------AATG-
GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGCGCATGA---------
>LTR7up1_chr3_187175504187181262_5079_ZNF534_k4me3_enh_FOXP1_KLF4_NANOG_OCT4_SOX2_TCF4_FOXA1_7up_wanghigh_chimeric_GRO2of7__chr3_187180813187181262___1449
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC
CCTGTGAC---------------------------------------------TTGCACT
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACTA-GC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATTCTGTAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC
AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGCGCATG----------
>LTR7up1_chr11_23183934_23189744_3323_ZNF534_KAP1_EncodeRepressed_KLF4_NANOG_SOX2_7up_GRO4of7_C_7up_phylo___chr11_2318929323189744___1448
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGACATCGCATCC
CCTGTCAC---------------------------------------------TTGCACA
TATATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCAGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CATCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTCGCTGAC--TCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGATGCACATG----------
>LTR7up1_chr1_7298780172993602_3646_ZNF534_KAP1_KLF4_NANOG_OCT4_TCF4_7up_GRO2of7__chr1_7299315672993602___1446
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACA
TATATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTAC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCAGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAT---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-TCCCACTCC-TGCCCGCCACAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AATG-
GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCTACCTGCACGC
AGGTGA---AA----TAAACAGCCATGTTTCTCACACAAAGCCTG--TTT------GTCT
CTTCACATGGACGCACATG----------
>LTR7up1_chrX_112530380_112536357_3408_ZNF534_ZNF90_KAP1_EncodeTxn_KLF4_NANOG_44108_SOX2_7up_7up_phylo____chrX_112530380112530831____1450
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACA
TATATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCAGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------AAG----CATCTTGAG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTCACTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC
AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGATGCGCATGA---------
>LTR7up1_chr10_54166676_54172501_3524_ZNF534_EncodeTxn_KLF4_NANOG_44108_SMAD11_7up_chimeric_7up_phylo____chr10_5416667654167126____1450
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACT
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCAGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTCG--------------
----CTCATCCTGGCTCAAA-AAGCACCTCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AA-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTATCCA-AATCCTATAA-----------AACG-
GCCTCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCT
GGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GATGGTCT
CTTCACATGGACGCGCATGA---------
>LTR7up1_chr9_74085583_74091436_4739_transcribed_ZNF534_k4me3_TSS_FOXP1_KLF4_MED1_NANOG_44108_SMAD11_SOX2_TCF4_7up_wanghigh_GRO1of7_7up_phylo_____chr9_7408558374086032____1449
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC
CCTGTGAC---------------------------------------------TTGCACA
TATATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCAGTCCT-------------------
------------TG------------------CC----------TTAA----TTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGACTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTATCCA-A-TCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGCGCATGA---------
>LTR7up1_chr7_48146274_48146724_h3k27ac_EncodeRepressed_SOLO_KLF4_NANOG_7up_C_7up_phylo___chr7_4814627448146724___1450
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGT-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCAGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCTCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCC--------------
---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACACA-AATCCTATAA-----------AACT-
GCCCCACCC-T-T-ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACACGCATG----------
>LTR7up1_chr10_58860995_58867331_3664_ZNF534_KAP1_EncodeRepressed_KLF4_NANOG_FOXA1_7up_GRO4of7_C_7up_phylo___chr10_5886688158867331___1450
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
AATATGCCCTGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGT-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCAGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AGCG-
GCCCCACCC-T-T-ATCTCCCTTTGCTGACTCTCTTTTCGGACGCAGCCCGCCTGCACCC
AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACACACATG----------
>LTR7up1_chr3_190920164_190925860_3402_ZNF534_KAP1_EncodeRepressed_KLF4_NANOG_FOXA1_7up_7up_phylo____chr3_190920164190920610____1446
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------CTGCACA
TATATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----CTATGCCCTGC-CCCATCTTAACTGAT-----------------------
---GACATTCCACCACAAAA---GTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AA-CACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCTACTCC-TGCCCACCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AAGG-
GCCCCACCC-T-T-ATCTACCTTTGCTGACTCTCTTTTCGGACGCAGCCCGCCTGCACCG
AGGTGA---AA----TAAACAGCCACGTTGCTCACACAAAGCCTG--TCT--GGTGGTCT
CTTCACATGGACACACATGA---------
>LTR7up1_chr4_119993664_119999666_3339_transcribed_ZNF534_k4me3_TSS_KLF4_NANOG_44108_SOX2_7up_wanghigh_GRO1of7_7up_phylo____chr4_119993664119994116____1450
-GTCAGGCCTCCGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-CC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AATG-
GCCCCATCC-T-T-ATCTCCCTTCGCTGACTCTCTCTTCGGACTCAGCCCGCCTGCACCC
AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGCGCATGA---------
>LTR7up1_chrX_111543807_111549673_3461_ZNF534_EncodeTxn_KLF4_MED1_NANOG_44108_SMAD11_SOX2_7up_GRO1of7_7up_phylo____chrX_111543807111544258____1450
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCTCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGATTCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTCCCTAG--------------
----CTCATCCTGGCACAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AAAG-
GCCCCACCC-T-T-ATCTCCCTTCCCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGCGCATGA---------
>LTR7up1_chr5_7635725676363071_3493_ZNF534_k4me3_EncodeRepressed_FOXP1_KLF4_NANOG_OCT4_7up_GRO2of7__chr5_7635725676357705____1449
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACGTCC
CCTGTGAC---------------------------------------------TTGCACG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTAAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AA-CACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTTTGACTATAATTTTCCTTTACCTGCCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCTTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCTCATGGACGCGCATGA---------
>LTR7up1_chr2_77088247_77094030_3397_transcribed_ZNF534_k4me3_TSS_FOXP1_KLF4_NANOG_44108_SMAD11_SOX2_TCF4_7up_wanghigh_chimeric_GRO1of7_7up_phylo_____chr2_7708824777088674____1427
-----------------------------------------------AGCAATCGCGTCC
CCTGTGAC---------------------------------------------TTGCACG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTTAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGACCGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCGAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCATTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATGA---------
>LTR7up1_chr3_60672203_60672653_h3k27ac_EncodeTxn_SOLO_FOXP1_KLF4_NANOG_44108_SOX2_7up_C_7up_phylo___chr3_6067220360672653___1450
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCCGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CTCACCTTAACTGAT-----------------------
---GACATTCCATCACAAAAGAAGTGTAAATGGCTGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTAG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCAGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AATG-
GCCCCACCC-T-T-ATCTCCCTTCGCTAACTCTCTTTTTGGACTCAGCCCGCCTGCACCC
AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGTGCATG----------
>LTR7up1_chr9_99675451_99675901_EncodeRepressed_SOLO_KLF4_NANOG_7up_7up_phylo____chr9_9967545199675901____1450
-GTCAGGCCTCTGAGCTCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCTGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCGC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTGTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AATG-
GCCCCACCC-T-T-ATCTCCCTTTGCCAACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACGTGCATGA---------
>LTR7up1_chr6_120462634_120468133_3347_ZNF534_k4me3_EncodeRepressed_KLF4_NANOG_7up_GRO5of7_GRO6of7_GRO7of7_C_7up_phylo___chr6_120467683120468133___1450
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCATG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCATAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAGCTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCGAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGGACAA-AC
CCCCTTTGACTGTAATTTTCATTTACCTACCCA-AATCCTATAA-----------AATG-
GCCCCACCC-T-T-ATCTCCCTTCGCGGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACGCGCATG----------
>LTR7up1_chr10_20370846_20371294_h3k4me3_TSS_SOLO_KLF4_NANOG_44108_SOX2_TCF4_7up_C_7up_phylo___chr10_2037084620371294___1448
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATGGCATCC
CCTGTGAC---------------------------------------------TTGCATG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
CATGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGCGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAGA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCA--------------
---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTATCTACCCA-AATCATATAA-----------AATC-
GTCCCACCC-T-T-ATCTCCCTTCGCTGACTC--TTTTCGGACTCAGCCCGCCTGCATCC
AGGTGA---AA----TAAACAGCTATGTTGCTCACACAAAGTCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATG----------
>LTR7up1_chr13_66226369_66232340_3265_ZNF534_ZNF90_KAP1_EncodeTxn_KLF4_NANOG_SOX2_FOXA1_7up_C_7up_phylo___chr13_6623189066232340___1450
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCATG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATACGCCCTGC-CCCACCTTGACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCCATCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GCC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAGA-AAACACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCA--------------
---------------------------AC-CCCTACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AATG-
GCCCCACCC-T-T-ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGATGCGCATG----------
>LTR7up1_chr3_98396749_98397196_EncodeRepressed_SOLO_FOXP1_KLF4_NANOG_44108_7up_7up_phylo____chr3_9839674998397196____1447
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCA--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AATG-
GCCCCACCC-T-T-ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--G---GTCT
CTTCACATGGACGCACATGA---------
>LTR7up1_chr6_114422439114428297_2444_ZNF534_k4me3_TSSflanking_FOXP1_KLF4_NANOG_OCT4_SOX2_FOXA1_7up_wanghigh_GRO2of7__chr6_114427847114428297___1450
TGTCAGGCCTTTGAGCCCAAG-----------------------TCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCATG
TATACACCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAAACACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTAAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CATCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCGGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AATG-
TCCCCACCC-T-T-ATCTCCCTTTGCTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC
AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAACCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATG----------
>LTR7up1_chr12_4018541_4023694_3517_ZNF534_k4me3_EncodeTxn_KLF4_NANOG_TCF4_7up_GRO1of7_7up_phylo____chr12_40185414018991____1450
-GACAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTATAAATGGTCGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCCGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCG-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA---AA----TACACAGCCATGTTGCTCACACGAAGCCTG--TTT--GTTGGTCT
CTTCACACAGACGCGCATGA---------
>LTR7up1_chr21_40954769_40960696_3256_ZNF534_KAP1_EncodeTxn_FOXP1_KLF4_NANOG_SMAD11_7up_GRO3of7_7up_phylo____chr21_4095476940955218____1449
-GTCAGGCCTCTGAGCCCATG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAACAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------AC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCGCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AG-TGA---AA----TACACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGCACGGGCATGA---------
>LTR7up1_chr2_114790472_114790923_EncodeTxn_SOLO_KLF4_NANOG_SOX2_7up_C_7up_phylo___chr2_114790472114790923___1450
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------CTGCACG
TATTCGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATACGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTATAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
AGT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTTCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCT-T-T-ATCTCCCTTTGCGGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA---AA----TACACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGCCT
CTTCACACGGACGCGCATG----------
>LTR7up1_chr22_24691086_24691536_h3k27ac_enh_SOLO_KLF4_NANOG_SOX2_TCF4_7up_C_7up_phylo___chr22_2469108624691536___1450
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACGCCCAGA------------------------------------------------
-----------------------------AGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----CTATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGCAAATGGCCGGCCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------GAG----CACCTTGCA--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCAAAC-T-T-ATCTCCCTTGGCTGACTCTCTTTTCGGACTCAGCCCGTCTGCACCC
AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATG----------
>LTR7up1_chr10_90081018_90086792_4759_ZNF534_k4me3_KLF4_NANOG_FOXA1_7up_wanghigh_C_7up_phylo___chr10_9008634190086792___1448
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCATG
GATATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTAAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCC-----------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
---------------------------------------------ACCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTCACTGACT--CTTTTCGGACTCAGCCTGCCTGCACCC
AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACACGCATG----------
>LTR7up1_chr13_41159944_41160425_h3k27ac_weakenh_SOLO_FOXP1_KLF4_NANOG_7up_7up_phylo____chr13_4115994441160425____1419
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCATG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCTTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCC-----------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
---------------------------------------------GCCAGACAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTCGATGACT--CTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACACGCATGA---------
>LTR7up1_chr13_51169866_51175006_3539_transcribed_ZNF534_k4me3_TSS_FOXP1_KLF4_MED1_NANOG_44108_SMAD11_SOX2_TCF4_7up_wanghigh_GRO1of7_7up_phylo_____chr13_5116986651170314____1417
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCATG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCTTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ACT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCC-----------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
---------------------------------------------GCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCGTTTGCTGACT--CTTTTCGGACTCAGCCTGCCTGCACCC
AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATGA---------
>LTR7up1_chr9_97214494_97220014_2573_transcribed_ZNF534_k4me3_TSS_KLF4_MED1_NANOG_44108_SOX2_TCF4_FOXA1_7up_wanghigh_GRO1of7_7up_phylo____chr9_9721449497214965____1409
-GTCAGGCCTCTGAGCCTAAG-----------------------CCAAGCCATCGCATCC
TCTGTGAC---------------------------------------------TTGCACG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAAA
AGTGA-----ATATGCCTTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
--------------CTCAAA-AAGCACCCCC-----------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
---------------------------------------------GCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCTA-AATCTTACAA-----------AACG-
GCCCCACCT-T-T-ATCTCCCTTGGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACACACATGA---------
>LTR7up1_chr1_212910008_212914681_3500_ZNF534_k4me3_TSS_FOXP1_KLF4_MED1_NANOG_44108_SMAD11_SOX2_TCF4_FOXA1_7up_wanghigh_GRO1of7_7up_phylo_____chr1_212910008212910445____1406
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCTTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACACCC-----------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
---------------------------------------------GCCAGAGAACAA-AC
CTCCTTTCACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTCTTCGAACTCAGCCCGCCTGCACCC
AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACA----------------------
>LTR7up1_chr1_55022708_55028369_3386_ZNF534_ZNF90_KAP1_k4me3_EncodeTxn_KLF4_NANOG_FOXA1_7up_chimeric_7up_phylo____chr1_5502270855023157____1418
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCTGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----TTCATCCTGGCTCAAA-AAGCACCCCC-----------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
---------------------------------------------GCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCTACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC
AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGATGCACATG----------
>LTR7up1_chrX_114466672_114472531_3446_transcribed_ZNF534_k4me3_EncodeTxn_FOXP1_KLF4_MED1_NANOG_44108_SMAD11_SOX2_TCF4_7up_wanghigh_GRO1of7_7up_phylo_____chrX_114466672114467121____1418
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAAATGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----ATCATCCTGGCTCAAA-A-GCACCCCC-----------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
---------------------------------------------GCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCTACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC
AGGTGA---AA----TAAACAGCCACGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACACACATGA---------
>LTR7up1_chr20_1335788013362689_1823_ZNF534_k4me3_weakenh_FOXP1_KLF4_NANOG_OCT4_7up_wanghigh_GRO2of7__chr20_1335788013358330____1450
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATAGGCCCTGC-CGCACCTTAACTGAT-----------------------
---GAAATTCCCCCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTGCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCTCACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTCGCTGACTTTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATGA---------
>LTR7up1_chr6_128746106_128746587_h3k27ac_weakenh_SOLO_KLF4_NANOG_44108_SOX2_7up_C_7up_phylo___chr6_128746106128746587___1450
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCATCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCAGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTGCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACTC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTAT
CTTCACACGGACGCGCATG----------
>LTR7up1_chr21_5600080_5600530_SOLO_7up_C_7up_phylo___chr21_56000805600530___1450
TGTCAGGCCTCTGAGACCAAG-----------------------CCAAGCCATCGCATCC
CCCGTGAC---------------------------------------------TTGCACG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAATA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCATAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAGAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CATCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCTCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACGCAGCCCGCGTGCACCC
AGGTGA---AA----TAAACAGCCATGTTGCTCACACACAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATG----------
>LTR7up1_chr21_7095306_7095756_SOLO_7up_C_7up_phylo___chr21_70953067095756___1450
TGTCAGGCCTCTGAGACCAAG-----------------------CCAAGCCATCGCATCC
CCCGTGAC---------------------------------------------TTGCACG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAATA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCATAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAGAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CATCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCTCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACGCAGCCCGCGTGCACCC
AGGTGA---AA----TAAACAGCCATGTTGCTCACACACAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATG----------
>LTR7up1_chr21_7477084_7477534_SOLO_7up_C_7up_phylo___chr21_74770847477534___1450
TGTCAGGCCTCTGAGACCAAG-----------------------CCAAGCCATCGCATCC
CCCGTGAC---------------------------------------------TTGCACG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAATA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCATAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAGAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CATCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCTCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACGCAGCCCGCGTGCACCC
AGGTGA---AA----TAAACAGCCATGTTGCTCACACACAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATG----------
>LTR7up1_chr21_6220440_6220890_SOLO_7up_7up_phylo____chr21_62204406220890____1450
-GTCAGGCCTCTGAGACCAAG-----------------------CCAAGCCATCGCATCC
CCCGTGAC---------------------------------------------TTGCACG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAATA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCATAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAGAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CATCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCTCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACGCAGCCCGCGTGCACCC
AGGTGA---AA----TAAACAGCCATGTTGCTCACACACAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATGA---------
>LTR7up1_chr21_7660871_7661321_SOLO_7up_7up_phylo____chr21_76608717661321____1450
-GTCAGGCCTCTGAGACCAAG-----------------------CCAAGCCATCGCATCC
CCCGTGAC---------------------------------------------TTGCACG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAATA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCATAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAGAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CATCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCTCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACGCAGCCCGCGTGCACCC
AGGTGA---AA----TAAACAGCCATGTTGCTCACACACAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATGA---------
>LTR7up1_chr12_67766804_67772346_3494_ZNF534_KAP1_k4me3_enh_KLF4_NANOG_44108_FOXA1_7up_GRO4of7_C_7up_phylo___chr12_6777189667772346___1450
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGACGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCTACTCC-TGCCCGCCAGAAAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACA-
GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTTTTTTCAGACTCAGCCCGCCTGCACCC
AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACCGACGCGCATG----------
>LTR7up1_chr2_117278753_117284509_3404_transcribed_ZNF534_k4me3_weakenh_FOXP1_KLF4_NANOG_44108_SOX2_TCF4_FOXA1_7up_wanghigh_GRO1of7_7up_phylo____chr2_117278753117279203____1450
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TACCCGCCAGAGAACAA-AC
TCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACA-
GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC
AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CGTCATACGGACGCGCATGA---------
>LTR7up1_chr1_223024396223030156_4885_ZNF534_k4me3_TSS_KLF4_MED1_NANOG_OCT4_SOX2_TCF4_FOXA1_7up_wanghigh_GRO2of7__chr1_223029702223030156___1450
TGCCAGGCCTCTGAGCCCAAG-----------------------CCAAACCATTGCATCC
CCTGTGAC---------------------------------------------TTGCATA
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAACTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTAG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACA-
GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA---AA----TAAACAGCCATGTTGCTCACACACAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATG----------
>LTR7up1_chr14_4151587141521881_3430_ZNF534_KAP1_k4me3_EncodeTxn_FOXP1_KLF4_NANOG_OCT4_7up_GRO2of7__chr14_4151587141516320____1449
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAC-CATCCCAGCC
CCTGTGAC---------------------------------------------TTGCACA
TATATGACCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCATCGCTGATTCTCTTTTTGGACTCAGCCCGCCTGCACCC
AGGTGA---AA----TAAACAGCCATGTTGCTCACGCAAAGCCTG--TTT--GGTGGTCT
CCTCACACGGACGCGCATGA---------
>LTR7up1_chr12_79539848_79545625_4837_ZNF534_ZNF90_KAP1_k4me3_FOXP1_KLF4_NANOG_44108_7up_wanghigh_GRO1of7_7up_phylo____chr12_7953984879540298____1450
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAACCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACA
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CATCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTCACTGATTCTCTTTTTGGACTCAGCCTGCCTGCACCC
AGGTGA---AA----TAAAGAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACCGACGCACATGA---------
>LTR7up1_chr6_115031793_115037619_3648_ZNF534_KAP1_EncodeRepressed_FOXP1_KLF4_NANOG_SOX2_7up_7up_phylo____chr6_115031793115032243____1450
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCGCATCT
CCTGTGAC---------------------------------------------TTGCATA
TATATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GAGATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CATCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AATG-
GCCCCACTC-T-T-ATCTCCCTTCCCTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC
AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGATGCACATGA---------
>LTR7up1_chr12_66497777_66498226_h3k27ac_enh_SOLO_KLF4_NANOG_44108_7up_7up_phylo____chr12_6649777766498226____1449
--TCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCTACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GGG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCTCTTTGACTGTAATTTTCATTTACCTACCCA-AATCCTATAA-----------AACT-
GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCCCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACGCGCATGA---------
>LTR7up1_chr13_56112411_56118259_3430_ZNF534_KAP1_k4me3_EncodeTxn_KLF4_NANOG_44108_FOXA1_7up_wanghigh_C_7up_phylo___chr13_5611780956118259___1450
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TGTACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAATAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACAACAAAAGAAGTGTAAATGGCTGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAA----CACCTTGTG--------------
---------------------------AC-CCCCATTCC-TGCCCGCCAGAGAACAA-AC
CCTCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCGCCTGCAACC
AGGTGA---AA----TAAACAGCCATGCTGCTCACACAAAGCCTG--TTT--GGTGCTCT
CTTCACACAGATGCGCATG----------
>LTR7up1_chr12_10332976_10338643_3275_ZNF534_k4me3_EncodeTxn_FOXP1_KLF4_NANOG_SOX2_7up_C_7up_phylo___chr12_1033819310338643___1448
TGTCAGGCCTCTGAGCCTAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACA
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCTTGGCTCAAA-AATCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTTTGACTGCAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTTCCTGACTC--TTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCATACAGACGCGCATG----------
>LTR7up1_chr8_84290302_84290753_h3k27ac_enh_SOLO_KLF4_NANOG_44108_SOX2_TCF4_7up_C_7up_phylo___chr8_8429030284290753___1448
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATGGCATCC
CCTGTGAC---------------------------------------------TTGCAGG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGGCGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTTGCTGACTC--TTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACGCGCATG----------
>LTR7up1_chr13_83833382_83833829_EncodeRepressed_SOLO_KLF4_NANOG_TCF4_7up_7up_phylo____chr13_8383338283833829____1447
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATTGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATAAGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAA---GTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACT--------TT--GTGAAAGTCCTTTCCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA---AA----TAAACAGCCATGGTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATGA---------
>LTR7up1_chr4_91654602_91660568_3326_ZNF534_EncodeTxn_KLF4_NANOG_FOXA1_7up_GRO3of7_C_7up_phylo___chr4_9166011891660568___1450
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATGC
CCTGTGAC---------------------------------------------TTGCACA
TATAAGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGTCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCA--------------
---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATTTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGCGGTCT
CTTCACACGGACGCGCAGG----------
>LTR7up1_chr11_7912151_7917907_3408_ZNF534_ZNF90_KAP1_k4me3_EncodeTxn_KLF4_NANOG_7up_GRO1of7_C_7up_phylo___chr11_79174687917907___1439
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATATGCACAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGGGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCC-----------------
-----------TGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CAACTTTCG--------------
---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACA-
GCCCCACCC-T-T-ATCTCCCTTTGTTGACTCTCTTTTCGGACTCAG-CCGCCTGCACCC
AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAACCCTG--TTT--GGTGGTCT
CTTCACACAGACGCACATG----------
>LTR7up1_chr16_65229805_65235349_3369_ZNF534_k4me3_TSS_KLF4_NANOG_44108_SOX2_TCF4_FOXA1_7up_wanghigh_C_7up_phylo___chr16_6523490065235349___1449
TGTC-GGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CT----------TCAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTTCG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AG
CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACGCGCATG----------
>LTR7up1_chr3_112418412112423365_5101_ZNF534_ZNF90_KAP1_k4me3_enh_KLF4_MED1_NANOG_OCT4_SMAD11_TCF4_7up_wanghigh_GRO2of7__chr3_112422914112423365___1450
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTCCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAA-AC
CCTCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACGCGCATG----------
>LTR7up1_chr3_25858903_25859352_SOLO_KLF4_NANOG_44108_7up_C_7up_phylo___chr3_2585890325859352___1446
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATTGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATAAGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGTCGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ACT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTAG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTT----TGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACAC
AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACGCACATG----------
>LTR7up1_chr1_221973078_221978957_3397_ZNF534_k4me3_weakenh_FOXP1_KLF4_MED1_NANOG_44108_SOX2_TCF4_7up_wanghigh_C_7up_phylo___chr1_221978509221978957___1447
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCATG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATACGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGTCGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--G---AAGTCCTTTTCCTAG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAA-AC
CCCCTTTAACTATAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCGCTTCACTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGATGCACATG----------
>LTR7up1_chr14_89440363_89440800_h3k27ac_enh_SOLO_KLF4_NANOG_44108_SOX2_7up_7up_phylo____chr14_8944036389440800____1437
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATAGGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAGAAGAAGTGTAAATGGCCGGTTCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTT-------------------
---------CCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCGACTCC-TGCCCGCCAGAGAACAA-AC
GCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTCGCTGAC--TCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA---AA----TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGATGC-CATGA---------
>LTR7up1_chr3_191666260_191672378_3422_ZNF534_KAP1_k27ac_EncodeTxn_FOXP1_KLF4_NANOG_44108_FOXA1_7up_GRO5of7_GRO6of7_GRO7of7_C_7up_phylo___chr3_191671928191672378___1450
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATTCGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-GGCCCACCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACACA-AATCCTATAA-----------AATG-
ACCCCATCC-T-T-ATCTCCTTTCGCTGACTGTCTTTTCAGACTCAGCCCACCTACACCC
AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGATGCACATG----------
>LTR7up1_chr9_93347588_93353344_4824_transcribed_ZNF534_k4me3_enh_FOXP1_KLF4_NANOG_44108_SMAD11_SOX2_TCF4_FOXA1_7up_wanghigh_GRO1of7_7up_phylo_____chr9_9334758893348038____1449
--TCAGGCCTCTGAGCCCAAG-----------------------TCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACACCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGATGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGGG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACA-
GCCCCACCC-T-T-ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGAAGCGCATGA---------
>LTR7up1_chrY_5941111_5946036_4905_KAP1_NANOG_SOX2_FOXA1_7up_wanghigh_GRO1of7_7up_phylo____chrY_59411115941560____1449
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATTGCATCC
CCTGTGAC---------------------------------------------TTGCACG
CATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAGGA
AGTGA-----ATATGCCCTGC-CCCACCTTAATTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAAGGAACAA--C
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTTGCTGACTCTCTTTTTGGACTCAGCCCACCTGCACCC
AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATGA---------
>LTR7up1_chrX_92824428_92829345_4892_ZNF534_KAP1_EncodeRepressed_FOXP1_KLF4_NANOG_44108_7up_7up_phylo____chrX_9282442892824880____1450
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATTGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAGGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GATATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CT----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTTGCTGACTCTCTTTTTGGACTCAGCCCACCTGCACCC
AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACACGCATGA---------
>LTR7up1_chr8_114281698_114287733_3369_transcribed_ZNF534_k4me3_TSS_KLF4_NANOG_44108_SMAD11_FOXA1_7up_wanghigh_GRO1of7_7up_phylo____chr8_114281698114282146____1448
-GTCGGGCCTCTGGGCCCAAG-----------------------CCAAGCCATTGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCATTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAGA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCT-TGCCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTTCCTTTGCTGACTCT--TTTCAGACTCAGCCCACCTGCACCC
AGGTGA---AA----TAAACAGCCATGTAGCTCACACAACGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCACATGA---------
>LTR7up1_chr2_187670483_187676269_3302_ZNF534_KAP1_k4me3_weakenh_KLF4_NANOG_44108_SMAD11_TCF4_7up_C_7up_phylo___chr2_187675819187676269___1450
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATTGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACTCCCAGG------------------------------------------------
-----------------------------TGGCCTGAAGTAACTCAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTGACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCAGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------GC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCGCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA---AA----TAAACAGCCACGTTGCTCACACAAAGCATG--TTT--GGTGGTCT
CTTCACACAGACGCGCAAG----------
>LTR7up1_chr10_6797083_6802953_3387_ZNF534_KAP1_k4me3_TSS_FOXP1_KLF4_NANOG_44108_TCF4_FOXA1_7up_C_7up_phylo___chr10_68025036802953___1450
TGTCATGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATAC
CCTGTGAC---------------------------------------------TTGCACG
TATATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAC-----------------------
---GACATTCTACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGACTCAAA-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCA--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AATG-
GCCCCACCC-C-T-ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC
AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGATGCGCATG----------
>LTR7up1_chr2_7872706_7878891_3338_transcribed_ZNF534_k4me3_TSS_FOXP1_KLF4_MED1_NANOG_44108_SOX2_TCF4_7up_wanghigh_GRO1of7_C_7up_phylo____chr2_78784417878891___1448
TGTCAGGCTTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
TCTGTGAC---------------------------------------------TTGCACG
TATATGCCCAGA------------------------------------------------
-----------------------------TGGCTTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCA--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AATG-
GCCCCACCC-T-T-GTCTCCCTTCACTGACTCT--TTTCGGACTCAGCCCGCCTGCACCC
AGGTGA---AA----TAAACAGCCATGTTACTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCATACGGACGCGCATG----------
>LTR7up1_chr2_206806840206812627_5033_ZNF534_k4me3_enh_FOXP1_KLF4_NANOG_OCT4_SOX2_TCF4_7up_wanghigh_GRO2of7__chr2_206812177206812627___1450
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCATG
TATATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGG-CCCGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCAT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGACTCAAA-AATCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTCTCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATG----------
>LTR7up1_chr16_70616524_70622062_3336_ZNF534_k4me3_KLF4_NANOG_44108_SOX2_TCF4_FOXA1_7up_wanghigh_chimeric_C_7up_phylo___chr16_7062161170622062___1449
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC
CCTGTGAC---------------------------------------------TTGCACG
TATATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCCCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAAA-AA-CACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCTCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC
AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GATGGTCT
CTTCACACGGACGCGCATG----------
>LTR7up1_chr7_83459668_83465383_4697_transcribed_ZNF534_k4me3_TSS_FOXP1_KLF4_MED1_NANOG_44108_SOX2_TCF4_FOXA1_7up_wanghigh_chimeric_GRO1of7_7up_phylo____chr7_8345966883460118____1450
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATTCGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCTGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCTTTTGACTGGAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGTGCATGA---------
>LTR7up1_chr6_21361492_21367257_5036_ZNF534_k4me3_EncodeRepressed_KLF4_NANOG_44108_FOXA1_7up_wangmod_GRO4of7_C_7up_phylo___chr6_2136681721367257___1440
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCT
CCTGTGAC---------------------------------------------TTGCACG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACCGAAGAATCACAAAAGA
AGTGA-----ATATGGCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTT--------------------
--------TCCTGGCTCAAA-AAGCACCCGCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATG----------
>LTR7up1_chr8_115212253115217978_3275_ZNF534_ZNF90_KAP1_k4me3_EncodeTxn_FOXP1_KLF4_NANOG_OCT4_FOXA1_7up_GRO2of7__chr8_115212253115212703____1450
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTAAAAGTCCTTTCCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACC-
GCCCCACCC-T-T-ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC
AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GATGGTCT
ATTCACACAGACGTGCATGA---------
>LTR7up1_chr5_157945254_157945704_h3k27ac_weakenh_SOLO_KLF4_NANOG_7up_7up_phylo____chr5_157945254157945704____1450
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAATA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TA------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTCCCTGG--------------
----CTCGTCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCTTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGTGCATGA---------
>LTR7up1_chr3_176321619_176327363_3232_ZNF534_k4me3_TSS_FOXP1_KLF4_NANOG_44108_SMAD11_TCF4_7up_wanghigh_GRO1of7_C_7up_phylo___chr3_176326913176327363___1450
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCT
CCTGTGAC---------------------------------------------TTGCAGG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAATACCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATAGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCTCGCCAGAGAACAA-AC
CCCTTCTGACTGTAATTTTCCTTTACCTACCGA-AATCCTATGA-----------AACG-
GCCCTACCC-T-T-ATCTCCCTTCACTGACTCTCTTTTCAGACTCAGCCTGCCTGCACCC
AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGTGCATG----------
>LTR7up1_chr13_8635816886364136_3426_ZNF534_k4me3_weakenh_KLF4_NANOG_OCT4_SMAD11_SOX2_7up_GRO2of7__chr13_8635816886358617____1449
-GTCAGGCCTCTGAACCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATACGCCCTTT-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCTGGTCCT-------------------
------------TG------------------CC----------TTAA----ATGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-A-ACACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCTACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTATCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTCACTGATTCTCTTTTGGGACTCAGCCCGCCTGCACCC
AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGTGCATGA---------
>LTR7up1_chr5_120697546120703411_3389_ZNF534_k4me3_TSS_FOXP1_KLF4_MED1_NANOG_OCT4_SMAD11_SOX2_TCF4_FOXA1_7up_wanghigh_GRO2of7__chr5_120702961120703411___1450
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGGAGAATCACAAAAGA
AGTGA-----ATACACTTTGC-CCCACCTTAACTGAT-----------------------
---AACATTCCACCACAAAAGAAGTGTAAATGGCTAGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAATCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AGGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCGACCCA-AATCCTATAA-----------AATG-
GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGTGCATG----------
>LTR7up1_chr14_4710419747108765_3439_ZNF534_k4me3_TSSflanking_FOXP1_KLF4_NANOG_OCT4_7up_wanghigh_chimeric_GRO2of7__chr14_4710419747104677____1448
---CAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAACA
AGTGA-----ATATGCCTTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC
AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGTGCATGA---------
>LTR7up1_chr20_40269054_40274761_3256_transcribed_ZNF534_k4me3_TSS_KLF4_NANOG_44108_7up_wanghigh_GRO1of7_7up_phylo____chr20_4026905440269503____1449
-GTCAGTCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTCCAGG
TATATGACCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTAAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AA-CACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AATG-
TCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGATGA---AA----TAAACAGCCACGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGTGCATGA---------
>LTR7up1_chrX_95092677_95093127_EncodeRepressed_SOLO_KLF4_NANOG_44108_7up_7up_phylo____chrX_9509267795093127____1450
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TCGCACG
TATATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCGCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCTTTTACCTACCCA-AATCCTATAA-----------AATG-
GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC
AGGTGA---AA----TAAACAGCCTTGTTGCTCACACAAAACCTG--TTT--GGTGGTCT
CTTCACACGGACGTGCATGA---------
>LTR7up1_chr4_78713842_78719721_3415_ZNF534_ZNF90_KAP1_k27ac_EncodeRepressed_KLF4_NANOG_FOXA1_7up_GRO5of7_GRO6of7_GRO7of7_C_7up_phylo___chr4_7871927278719721___1449
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC
CCTGTGAC---------------------------------------------TTGCACA
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCATGAAAGAAGTGCAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAA-GTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAGA-AAGCACCCTCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTCACTGACTCTCTTTTCAGACTCAGCCCACCTGCACCC
AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGATGTGCATG----------
>LTR7up1_chr9_118485633_118491397_3435_ZNF534_EncodeTxn_KLF4_NANOG_TCF4_7up_wanghigh_GRO4of7_C_7up_phylo___chr9_118490948118491397___1449
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTAAC---------------------------------------------TTGCACA
TATAAGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAAGTGAAGAATCACAAAAGA
AGTTA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCATAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTAG--------------
----CTCATCCTGGCTCAAA-AA-CACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCA--------------
---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTCTCTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC
AGGTAA---AA----TAAACAGCCATGTTACTCACACAAAGCCTA--TTT--GGTGGTCT
CTTCACACAGACGTGCATG----------
>LTR7up1_chr5_126839337_126845705_3467_ZNF534_k4me3_TSS_FOXP1_KLF4_NANOG_44108_SOX2_TCF4_7up_wanghigh_GRO1of7_C_7up_phylo___chr5_126845255126845705___1450
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATAAGCCCAGA------------------------------------------------
-----------------------------TGGCCTTAACTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCAAAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAGA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA---AA----TAAACAGCCGTGTTGCTCACACAAATCCTG--TTT--GGTGGTCT
CTTCACACAGACGTGCATG----------
>LTR7up1_chr2_66243889_66249502_4689_transcribed_ZNF534_k4me3_EncodeTxn_KLF4_NANOG_44108_7up_GRO1of7_7up_phylo____chr2_6624388966244336____1447
-GTCAGGCCTCTGAGCCCAAG-----------------------CGAAGCCATCGCATGC
CCTGTGAC---------------------------------------------TTGCACG
TATATGCCCACA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGT-------ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGTTCAGA--AGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTCCCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA---AA----TAAACAGCCATCTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGTGCATGA---------
>LTR7up1_chr4_145832612145838502_3642_ZNF534_ZNF90_KAP1_EncodeRepressed_FOXP1_KLF4_NANOG_TCF4_7up_GRO2of7__chr4_145832612145833009____1397
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATATGCCTAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTG------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------TGCG--------------
---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA---AA----TAAACAACCATGTTGCTCACACAAGGCCTG--TTT--GGTGGTCT
CTTCACACGGACGTGCATGA---------
>LTR7up1_chr11_9658763596593674_3349_ZNF534_KAP1_k4me3_EncodeTxn_KLF4_NANOG_OCT4_SMAD11_7up_GRO2of7__chr11_9658763596588085____1450
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CTTGTGAC---------------------------------------------TTGCACG
TATATGCTCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCGCCACAAAAGAAGTGTAAACGGCCAGTCCT-------------------
------------TA------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCCCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AATG-
GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTGCGGACTCAGCCCGCCTGCACCC
AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACGCGCATGA---------
>LTR7up1_chr2_215922303_215928126_4935_ZNF534_k4me3_EncodeTxn_KLF4_NANOG_44108_7up_wanghigh_GRO1of7_7up_phylo____chr2_215922303215922755____1450
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CTCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAA-AC
CCACTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCA-T-T-ATCTCCCTTCACTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC
AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACGTGCACGA---------
>LTR7up1_chr5_5515523_5521164_4804_ZNF534_ZNF90_KAP1_EncodeTxn_KLF4_NANOG_SOX2_TCF4_7up_wangmod_7up_phylo____chr5_55155235515972____1449
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATTGCATCC
CCTGTGAC---------------------------------------------TTGCATG
TATATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ACATGCCCTGC-CCCACCTTAATTGAT-----------------------
---GACATTCCACCATAAAAGAAGTGTAAATGGCCAGTCCT-------------------
------------TG------------------CC----------TTAA----ATGATGAT
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTC-TTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACA-
GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC
AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAACCCTG--TTT--GGTGGTCT
CTTCACACAGACGTGCATGA---------
>LTR7up1_chr5_104063635_104070481_1980_ZNF534_k4me3_KLF4_NANOG_44108_7up_GRO3of7_C_7up_phylo___chr5_104070031104070481___1450
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCATG
TATATGCCCAGA------------------------------------------------
-----------------------------TGGCCTAAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACGTTCCACCACAAAAGAAGTGTAAATGGCCAGTCAT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTGCCTTCGCTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC
AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACAGGGACGCGCATG----------
>LTR7up1_chr4_83850020_83850501_h3k27ac_enh_SOLO_KLF4_NANOG_44108_7up_C_7up_phylo___chr4_8385002083850501___1450
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATAGGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCAGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAA-AT
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC
AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATG----------
>LTR7up1_chr13_69197067_69197517_EncodeRepressed_SOLO_FOXP1_KLF4_NANOG_7up_C_7up_phylo___chr13_6919706769197517___1450
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC
CCTGTGAC---------------------------------------------TTGCATG
TATATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTGACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCAGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCTCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-CC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATG----------
>LTR7up1_chr15_87831107_87837022_3360_ZNF534_EncodeTxn_KLF4_NANOG_7up_GRO3of7_7up_phylo____chr15_8783110787831555____1448
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAGGA
AGTGA-----ATATGCCCTGC-CCTACCTTAACTGAT-----------------------
---GACGTTCCACCACAAAAGAAGTGTAAATGGCCAGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACTCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCAGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCT--TTTCGGACTCAGCCCGCCTGCACCC
ATGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACGCGCATGA---------
>LTR7up1_chr13_3631632536322191_3430_ZNF534_ZNF90_KAP1_k4me3_EncodeTxn_KLF4_NANOG_OCT4_TCF4_7up_wanghigh_chimeric_GRO2of7__chr13_3631632536316770____1445
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACA
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAA---
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCTACCACAAAAGAAGTGTAAATGGCCACTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TACCTGACAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTTGCTGACTCT--TTTCAGACTCAGCCTGCCTGCACCC
AGGTGA---AA----TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACGCGCATGA---------
>LTR7up1_chr4_9227149292277648_3293_ZNF534_k4me3_TSS_FOXP1_KLF4_NANOG_OCT4_SMAD11_SOX2_TCF4_7up_wanghigh_chimeric_GRO2of7__chr4_9227719892277648___1450
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC
CCTATGAC---------------------------------------------TTGCATG
TATACACCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGTCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCTGATCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------GT--GCGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCA--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAAAAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACA-
GCCCCACCC-T-T-ATCTCTCTTTGCTGACTCTCTTTTCAGACTCAGCCAGCCTGCACCC
AGGTGA---AA----TAAACAGCCATGTTGCTCACGCAAAGCCTG--TTT--GGTGGTCT
CTTCAAACAGACGTGCATG----------
>LTR7up1_chr6_121620422_121626300_3642_ZNF534_ZNF90_KAP1_EncodeTxn_FOXP1_KLF4_MED1_NANOG_44108_TCF4_FOXA1_7up_GRO1of7_C_7up_phylo___chr6_121625853121626300___1443
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGAAACTGAAGAATCACAAAAGA
AGTGA-----GTATGCCCTGG-CCCACCTTAATTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCAGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCTACTCC-TGCCCGCGAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCCACCCA-AATCCTATAA-----------AACA-
GCCCCACCC-T-T-ATCTCCCTTTGCTGACTCTCTTTTCA-------CCTGCCTGCACCC
AGGTGA---AA----TAAATAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACGTGCATG----------
>LTR7up1_chr6_125701848_125707763_3559_ZNF534_k4me3_enh_KLF4_NANOG_44108_SMAD11_SOX2_FOXA1_7up_wanghigh_C_7up_phylo___chr6_125707314125707763___1447
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGTCCTGC-CTCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAAC----C
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC
AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTAT
CTTCACACGGACGCGCATG----------
>LTR7up1_chr2_12626335_12632257_3557_ZNF534_KAP1_k27ac_EncodeTxn_FOXP1_KLF4_NANOG_44108_7up_7up_phylo____chr2_1262633512626785____1450
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC
CCTGTGAC---------------------------------------------TTGCACC
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGGGTAAATGGCCAGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTAG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCC--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CTCCTTTGACTGTAATTTTCCTTTACCTCCCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCACCTGCACTC
AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGATGCTCATGA---------
>LTR7up1_chr16_60078535_60084578_3454_ZNF534_k4me3_EncodeTxn_FOXP1_KLF4_NANOG_7up_7up_phylo____chr16_6007853560078985____1450
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTATGAC---------------------------------------------TTGCACC
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCAGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTAG--------------
----CTCATCCTGGCTCAAA-AAACACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCACTGACTCTCTTTTCAGACTCAGCCCTCCTGCACCC
AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATGA---------
>LTR7up1_chr8_71674937_71680660_3428_transcribed_ZNF534_ZNF90_k4me3_TSS_KLF4_MED1_NANOG_44108_SMAD11_SOX2_TCF4_7up_wanghigh_GRO1of7_7up_phylo_____chr8_7167493771675387____1450
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACTACAAAAGAAGTGTAAATGGCTGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTAG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACA-
GCTCCACCC-C-T-ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCCCCTGCACCC
AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGATCT
CTTCACATGGATGCACATGA---------
>LTR7up1_chr10_53492723_53504727_3435_ZNF534_KAP1_k27ac_weakenh_FOXP1_KLF4_MED1_NANOG_44108_SMAD11_SOX2_7up_GRO4of7_C_7up_phylo___chr10_5350427853504727___1449
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCAGG
TATACG-CCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCAGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTAG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGTCCGCCTGCACCC
AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATG----------
>LTR7up1_chr4_24500975_24506750_3448_ZNF534_k4me3_weakenh_FOXP1_KLF4_NANOG_44108_SOX2_TCF4_FOXA1_7up_GRO1of7_7up_phylo____chr4_2450097524501425____1450
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCATG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAATGACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTGACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTAG--------------
----CTCATCCTGGCTCAAA-AATTACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACTTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCCCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGTGCATGA---------
>LTR7up1_chr10_52033757_52039561_4881_ZNF534_ZNF90_KAP1_k4me3_TSS_FOXP1_KLF4_MED1_NANOG_44108_SMAD11_TCF4_7up_wanghigh_chimeric_C_7up_phylo___chr10_5203911352039561___1448
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAT---------------------------------------------TTGCACA
TGTACGCCCAGA------------------------------------------------
-----------------------------TGACCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCAGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTGC-TGCCTGCCAGAGAACAA-CC
CCCCTTTGAC--TAATTTTCCTTTACCTACCCA-GATCCTATAA-----------AATG-
GCCCCACCC-C-T-ATCTCCCTTCACCGACTCTCTTTTCGGACTCAGTCCGCCTGCACCC
GGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGTGCATG----------
>LTR7up1_chrX_122222004_122227785_5005_transcribed_ZNF534_k4me3_TSSflanking_FOXP1_KLF4_NANOG_44108_TCF4_FOXA1_7up_wanghigh_GRO1of7_7up_phylo____chrX_122222004122222454____1450
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGGCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCTTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAGAAGAAGTGTAAACGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGCCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-CC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-ATCTTCCTTCACTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGCACATGA---------
>LTR7up1_chrX_125388838_125394560_3232_ZNF534_ZNF90_KAP1_k4me3_TSSflanking_FOXP1_KLF4_MED1_NANOG_44108_SMAD11_7up_wanghigh_C_7up_phylo___chrX_125394110125394560___1450
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACA
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCTTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATAAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-ATCTTCCTTCACTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATG----------
>LTR7up1_chr8_128611901_128617630_3345_ZNF534_k4me3_TSS_FOXP1_KLF4_NANOG_44108_FOXA1_7up_C_7up_phylo___chr8_128617180128617630___1450
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCCCATCC
CCTGTGAC---------------------------------------------TTGCACG
TAAACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAATAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---TACATTCCATCAGAAAGGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------AAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-ATTTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA---AA----TAAACAACCATGTTGCTCATACAGAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGCGTATG----------
>LTR7up1_chr2_5000769_5006730_3382_ZNF534_EncodeRepressed_KLF4_NANOG_TCF4_7up_7up_phylo____chr2_50007695001216____1447
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCTGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCAGCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAAC----C
CCCCTTTGATTGTAATTCTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCACTGACTCTCTTTTCAGACCCAGTCTGCCTGCACCC
AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGCGCATGA---------
>LTR7up1_chr12_72816112_72816590_EncodeTxn_SOLO_FOXP1_KLF4_NANOG_44108_7up_C_7up_phylo___chr12_7281611272816590___1447
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCTTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAA---GTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCAACC-T-T-ATCTCCCTTCACTGACTCTCTTTTTGGACTCAGCCCACCTGCACCC
AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACATGCATG----------
>LTR7up1_chr2_63847467_63847912_h3k27ac_TSS_SOLO_KLF4_MED1_NANOG_TCF4_7up_C_7up_phylo___chr2_6384746763847912___1445
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATTGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTAAAGCAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AC-CACCCCAAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AATG-
GCCCCACCC-T-T-ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA---AA----TA----GCCATGTTGCTCACACAAAGCCTA--TTT--GGTGGTCT
CTTCACACGGACGAGCATG----------
>LTR7up1_chr7_9353405_9359207_4739_ZNF534_ZNF90_KAP1_EncodeTxn_KLF4_NANOG_7up_GRO4of7_C_7up_phylo___chr7_93587579359207___1450
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTTCACG
TATACACTCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACCAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTAG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCTCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AATG-
GCCCCACCC-T-T-ATTTCCCTTCGCTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC
AGGTGA---AA----TAAACAGCCATGTTACTCACACAAAGTCTG--TTT--GGTGGTCT
CTTCACACGGACACGCATG----------
>LTR7up1_chr6_97779488_97785325_4861_ZNF534_KAP1_k27ac_enh_KLF4_MED1_NANOG_44108_SOX2_TCF4_FOXA1_7up_GRO1of7_7up_phylo____chr6_9777948897779947____1450
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCGGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---AACATTCCACCACAAAAGAAGTGTAAATGGCCAGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AATG-
GCCCCACCC-T-T-ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCGCCTACACCC
AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACACGCATGA---------
>LTR7up1_chr5_136565340_136571245_3256_ZNF534_ZNF90_KAP1_k27ac_EncodeTxn_FOXP1_KLF4_NANOG_44108_TCF4_7up_C_7up_phylo___chr5_136570797136571245___1447
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATAC
CCTGTGAC---------------------------------------------TTGCACG
TATACACCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGC-CTGC-CCCATCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGACAGTCCT-------------------
------------TG------------------AC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCTCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AATG-
GCCCCACTC-T-T-ATCTCGCTTTGCTGACT--CTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCACATG----------
>LTR7up1_chr1_81245283_81251207_3293_ZNF534_ZNF90_KAP1_k4me3_TSSflanking_FOXP1_KLF4_MED1_NANOG_44108_SMAD11_SOX2_TCF4_7up_wanghigh_GRO1of7_7up_phylo____chr1_8124528381245733____1450
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCAGG
TATACACCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAAGGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGCTGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACTTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
GTCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AGTG-
GCCCCACCC-T-T-ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA---AA----TAAATAGCCATGTTGTTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGGCGTGCATGA---------
>LTR7up1_chr4_91623640_91629699_3347_transcribed_ZNF534_k4me3_TSSflanking_KLF4_NANOG_44108_SMAD11_SOX2_TCF4_7up_wanghigh_GRO1of7_7up_phylo____chr4_9162364091624089____1449
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATTGCATCC
CCTGTGAC---------------------------------------------CTGCATG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTATCTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAATGTAAATGGC-GGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAATAA-AT
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTAA---AA----TAAACAGCTATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACACCCATGA---------
>LTR7up2_chr6_9383015693835749_3487_ZNF534_k4me3_TSS_FOXP1_KLF4_NANOG_OCT4_SMAD11_SOX2_TCF4_FOXA1_7up_wanghigh_GRO2of7__chr6_9383529993835749___1450
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTTC-CCCACCTTAACTGAT-----------------------
---AACATTCCACCACAAAAGAAGTGTAAATGATCGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AATG-
GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA---AA----TAAACAGCTTTCTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCATATGGACGCGCATG----------
>LTR7up1_chrX_94704639_94705089_TSSflanking_SOLO_FOXP1_KLF4_MED1_NANOG_44108_TCF4_7up_C_7up_phylo___chrX_9470463994705089___1450
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC
CCTGTGTC---------------------------------------------TTGCACC
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCGACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCGTTACCTACCCA-AATCCTATAA-----------AACA-
GCCCCACCC-T-T-ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA---AA----TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATG----------
>LTR7up1_chrX_94698820_94704626_4948_ZNF534_k4me3_FOXP1_KLF4_MED1_NANOG_44108_7up_wanghigh_GRO1of7_C_7up_phylo___chrX_9470417994704626___1447
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATGC
CCTGTGAC---------------------------------------------TTGCACA
TGTATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATGTGCCCTGC-CCCGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAAAGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACA-
GCCCCACCC-T-T-ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA---AA----TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACATGCA------------
>LTR7up1_chr13_5604025156046275_4525_ZNF534_KAP1_EncodeRepressed_FOXP1_KLF4_NANOG_OCT4_FOXA1_7up_wanghigh_GRO2of7__chr13_5604025156040701____1450
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
ACTGTGAC---------------------------------------------TTGCACA
TATACACCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ACATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTGAATGGCGGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTAG--------------
----CTCATCCTGCCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAA-AC
CCTCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA---AA----TAAACAGCCACATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACGCGCATGA---------
>LTR7up1_chr4_92438954_92444654_3367_transcribed_ZNF534_k4me3_TSS_FOXP1_KLF4_MED1_NANOG_44108_SOX2_FOXA1_7up_wanghigh_chimeric_GRO1of7_C_7up_phylo___chr4_9244420492444654___1450
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATTGCAACC
CCTGTGAC---------------------------------------------TTGCACC
TATACTCCCAGA------------------------------------------------
-----------------------------TGGCCTAAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCAGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCGCCAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCGTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTCACTGACTCTCTTTACGGACTCAGCCTGCCTGCACCC
AGGTGA---AA----TAAGCAGATGTGTCGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACGCGCATG----------
>LTR7up2_chr8_132080238_132086002_3299_ZNF534_KAP1_k4me3_EncodeTxn_KLF4_NANOG_44108_SOX2_TCF4_7up_wanghigh_C_7up_phylo___chr8_132085552132086002___1450
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCAACC
CCTGTGAC---------------------------------------------TTGCACC
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTCTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGAG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA---AA----TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATG----------
>LTR7up2_chr4_55280350_55280798_h3k27ac_enh_SOLO_KLF4_NANOG_SOX2_7up_C_7up_phylo___chr4_5528035055280798___1448
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACA
TATATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGACGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TGAA----CCGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCATCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTCACTGACTCTCTTTTAGGACTCAGCCCGCCTGCACCC
AGGTGA---------TTAGAAGCTTTACTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACTCGCATG----------
>LTR7up2_chr12_20762909_20769058_3164_ZNF534_KAP1_EncodeTxn_KLF4_NANOG_7up_GRO1of7_7up_phylo____chr12_2076290920763358____1447
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCGTCC
CCTGTGAC---------------------------------------------TTGCATG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGTAGAATCACAAAAGA
AGTTA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCTGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCATGG--------------
----CTCATCCTGGCTCAAA-AA-CACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CACCTTTGACTATAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AATG-
GCCCCACCC-T-T-ATCTCCCTTCACTGACTCTCTTTTCAGACTCAGCCCACCTGCACCC
AGGTGA---------TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACACACATGA---------
>LTR7up2_chr10_53358813_53359266_h3k27ac_enh_SOLO_KLF4_NANOG_44108_SOX2_7up_C_7up_phylo___chr10_5335881353359266___1448
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCTCATCC
CCTGTGAC---------------------------------------------TTGCATG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACTTTAACTGAT-----------------------
---GACATTCTACCACAAAAGAAGTGTAAATGGCCAGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCTTTTTCCTCG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AATG-
GCCCCACCC-T-T-ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA---------TTAAAAGCTTTATTGCTCACTCAAAGCCTG--TTT--GGTGGTCT
CTTCACAGGGACACGCATG----------
>LTR7up2_chr17_53455673_53456123_h3k27ac_enh_SOLO_KLF4_NANOG_7up_C_7up_phylo___chr17_5345567353456123___1450
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC
CCTGTGAC---------------------------------------------TTGCACG
TATATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AATCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCA--------------
---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAA-AT
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATACTATAA-----------AATG-
GCCCCACCC-T-T-ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA---AA----TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATG----------
>LTR7up2_chr12_8693868286944755_3450_ZNF534_k4me3_EncodeTxn_FOXP1_KLF4_NANOG_OCT4_7up_GRO2of7__chr12_8693868286939132____1450
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATAAGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACGAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCTGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTAG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GTG----CACCTTGCA--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACA-
GCTCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA---AA----TAAATAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGAAGTGCATGA---------
>LTR7up2_chr2_76573625_76579704_3338_ZNF534_k4me3_KLF4_NANOG_44108_FOXA1_7up_C_7up_phylo___chr2_7657925476579704___1450
TGTCAAGCCTCTGAGCCCAAG-----------------------CCAAGCAATCGCATCC
CCTGTGAC---------------------------------------------TTGCACA
TATAAGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAAGTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCAGTCCT-------------------
------------TG------------------CC----------TTAC----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTAG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAA-AC
CCGCTTTGACTGCAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCTCCC
AAGTGA---AA----TAAACAGCTTTACTGCTCACACAAAGCCTG--TTT--GGTGGTCT
TTTCACAGGGACGCGCATG----------
>LTR7up2_chrX_87681680_87687644_3515_transcribed_ZNF534_KAP1_k4me3_EncodeTxn_KLF4_MED1_NANOG_44108_7up_wanghigh_GRO1of7_7up_phylo____chrX_8768168087682129____1449
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATTGCATCC
CCTGTGAC----------------------------------------------TGCACA
TATATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTAAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTAAAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA---AA----TAAAGAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGATGCGCATGA---------
>LTR7up2_chr15_88547268_88562263_2789_ZNF534_ZNF90_KAP1_EncodeRepressed_KLF4_NANOG_FOXA1_7up_GRO4of7_C_7up_phylo___chr15_8856181288562263___1450
TGTCAGGCCTCTGAGGCCAAG-----------------------CCAAGCCATTGCATCC
CCTGTGAC---------------------------------------------CTGCACG
TATAAGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCAACACAAAAGAAGTGTAAATGGCCAGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTAAAAGTCCTTTTCCTAG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AATG-
GCCCCACCC-T-T-ATCTCCCTTCACTGACTCTCTTTTCAGACTCAGCCCACCTGCACCC
AGGTGA---AA----TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATG----------
>LTR7up2_chr11_130753498_130759137_3424_ZNF534_k4me3_EncodeRepressed_KLF4_NANOG_44108_7up_GRO4of7_C_7up_phylo___chr11_130758688130759137___1449
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATGC
CCTGTGAC---------------------------------------------TTACATG
TATATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAACAA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCAGTCCT-------------------
------------TG------------------CC----------TTAA----GTGAGGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTAG--------------
----CTCACCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGAG--------------
---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA---AA----TAAACAGCTTTACTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATG----------
>LTR7up2_chr9_87410694_87416706_3585_transcribed_ZNF534_k4me3_TSS_FOXP1_KLF4_NANOG_44108_SOX2_TCF4_FOXA1_7up_wanghigh_GRO1of7_7up_phylo____chr9_8741069487411146____1450
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCTGCCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTAG--------------
----CTCATCCTGGCTCAAA-AAGCACCCACAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCA--------------
---------------------------AC-CCCAACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACA-
GCCCCACCC-C-T-ATCTGCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA---AA----TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACCGACGCGCATGA---------
>LTR7up2_chr8_114241604_114247083_2577_ZNF534_k4me3_EncodeRepressed_KLF4_NANOG_FOXA1_7up_GRO3of7_7up_phylo____chr8_114241604114242054____1450
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGACCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCATTCCT-------------------
------------TG------------------CC----------TCAA----GAGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GGGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAACTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA---AA----TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGTGCATGA---------
>LTR7up2_chr12_1470542114710640_3559_ZNF534_k4me3_TSS_FOXP1_KLF4_NANOG_OCT4_SOX2_7up_wanghigh_GRO2of7__chr12_1471015914710640___1450
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCATG
TATACCCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCTTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCTACCTGCACCC
AGGTGA---AA----TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATG----------
>LTR7up2_chr13_42868004_42873158_3482_ZNF534_k4me3_enh_FOXP1_KLF4_NANOG_44108_7up_wanghigh_GRO3of7_C_7up_phylo___chr13_4287270642873158___1442
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCCGTGAC---------------------------------------------TTGCACG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCTTGC-CCCACCGTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCTGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCC---------CCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACGC-T-T-ATTTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA---AA----TAAACAGCTTTACTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATG----------
>LTR7up2_chr9_115473181_115478918_3472_transcribed_ZNF534_k4me3_TSSflanking_FOXP1_KLF4_NANOG_44108_SMAD11_SOX2_7up_wanghigh_GRO1of7_7up_phylo____chr9_115473181115473632____1450
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
CATACACTCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCTACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CATCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACT-
GCCCCACCC-T-T-ATCTCCCTTCACTGACTCTCATTTCGGACTCATCCCACCTGCACCC
TGGTGA---AA----TAAACAGCTTCATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGTGCATGA---------
>LTR7up2_chr6_131901550_131907417_3448_transcribed_ZNF534_k4me3_weakenh_KLF4_MED1_NANOG_44108_SOX2_TCF4_7up_wanghigh_GRO1of7_7up_phylo____chr6_131901550131902003____1450
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATTGCATCC
GCTGTGAC---------------------------------------------TTGCACG
TATACACCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAAGTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TGAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CAACTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACTTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA---AA----TAAACAGCTTTACTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATGA---------
>LTR7up2_chr16_86742019_86747655_3249_ZNF534_k4me3_EncodeTxn_FOXP1_KLF4_NANOG_SOX2_FOXA1_7up_wanghigh_C_7up_phylo___chr16_8674720586747655___1450
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACA
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATAGGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTATAAATGGTCGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTCTCTGACTCTCTTTTCAGACTCAGCCCACCTGCTCCC
AGGTGA---AA----TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATG----------
>LTR7up2_chr1_5044796_5053098_5402_ZNF534_k27ac_EncodeTxn_FOXP1_KLF4_NANOG_7up_GRO3of7_7up_phylo____chr1_50447965045235____1439
-GCCAGGCCTCTGAGCCCAAG-----------------------ACAAGCCATCGCATCC
CCTGTGAC---------------------------------------------CTGCACC
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATAAGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AATCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCTACTCC-TGCCCGCCAGACAGCAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTC----GCTCTCTTTTCAGACTCAGCCCACCTGCATCC
AGGTGA---------TTAAAAGCTTTATTGCTCA----AAGCCTG--TTT--GGTG-TCT
CTTCACACGGACGTGCATGA---------
>LTR7up2_chr4_168018594_168019042_EncodeRepressed_SOLO_NANOG_7up_C_7up_phylo___chr4_168018594168019042___1448
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------CTGCATG
TATATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GATATTCCACCATAAAAGACGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCTACTCC-TGCCCGCCATAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-AACTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCACCTGCTCCC
AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATG----------
>LTR7up2_chr2_183529906_183530354_TSSflanking_SOLO_KLF4_NANOG_7up_7up_phylo____chr2_183529906183530354____1448
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------CTGCACA
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCCTTTCCTGG--------------
----CTCATCCGGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGCGCATGA---------
>LTR7up2_chr17_40011683_40012131_EncodeTxn_SOLO_KLF4_NANOG_7up_C_7up_phylo___chr17_4001168340012131___1447
TGTCAAGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTAAC---------------------------------------------TTGCACA
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCAACTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAGGTGTAAATGGCGGGTCCT-------------------
------------TG------------------CC----------TTAA----TTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA----------TAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGATGCCCATG----------
>LTR7up2_chr8_67719967_67720415_h3k27ac_enh_SOLO_FOXP1_KLF4_NANOG_44108_SMAD11_7up_C_7up_phylo___chr8_6771996767720415___1448
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACA
TATCCGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTGTAA-----------AACC-
GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCCCCC
AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATG----------
>LTR7up2_chr4_145698823_145703503_3326_ZNF534_KAP1_k4me3_EncodeTxn_KLF4_NANOG_44108_7up_wanghigh_GRO1of7_7up_phylo____chr4_145698823145699272____1448
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACA
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCAGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATTCTGGCTCAAA-TAGCACCCCCAT---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCA--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCCACCCA-AATCATATAA-----------AATG-
GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCAGACTCAGCCCACCTGCACCC
AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGATGCGCAAGA---------
>LTR7up2_chrY_18645041_18645491_SOLO_NANOG_7up_7up_phylo____chrY_1864504118645491____1446
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCAT-GCATCC
CCTGTGAC---------------------------------------------CTGCACG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGTTCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCTGGTCCT-------------------
------------TG------------------CC----------GTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATTCTGGCTCAAA-AAGCACGCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------GAG----CACCTTGCG--------------
---------------------------AC-CCCTACTCC-TGCCCGCCAGAGAACAA-AC
C-CCTTTGACTGTAATTTTCCTTTACCTACACA-AATCGTATAA-----------AACG-
GTCCCACCC-T-T-ATCTCCCTTGGCTGACTCTCTTTTTGGACTCAGCCCACCTGCACCC
AGGCGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGATGCACATGA---------
>LTR7up2_chr9_8545832085466944_3779_ZNF534_ZNF90_KAP1_k4me3_KLF4_NANOG_OCT4_7up_GRO2of7__chr9_8545832085458773____1447
-GTCAGGCCTCTAAGCACAAG-----------------------CCAAGCCAA-GCATCC
CCTGTGAC---------------------------------------------TTGCATG
TATATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGACCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAAAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CAACTTGCA--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CGCCTTTGACTGTAATTTTCTTTTACCTACCCA-AATCCTATCC-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTTGCTGGCTCTCTTTTTGGACTCAGCCCACCTGCACCC
AGGTGA---------TTAAAAGCTTTATTGCTCACACAAGGCCTA--TTT--GGAGGTCT
CTTCACACAGATGCACATGA---------
>LTR7up2_chr4_23722873_23727866_3435_ZNF534_EncodeTxn_KLF4_NANOG_7up_wangmod_chimeric_GRO4of7_C_7up_phylo___chr4_2372742023727866___1446
--TCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCATAAAAGAAGTGTAAGTGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTACCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-CC
C-TCTTTGACTGTAATTTTCCTTTACCTTCCCA-AATCCTATAA-----------AATG-
GCCCCAACC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACAGGGACGCGCATG----------
>LTR7up2_chr13_5557822855584087_3391_ZNF534_k4me3_TSS_FOXP1_KLF4_NANOG_OCT4_SMAD11_SOX2_TCF4_7up_wanghigh_GRO2of7__chr13_5558363855584087___1447
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAT
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCTGCCAGAAAACAA-CC
C-CCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AATG-
GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGTGCATG----------
>LTR7up2_chr14_41599669_41600169_h3k27ac_enh_SOLO_NANOG_44108_TCF4_C_7up_phylo___chr14_4159966941600169___1446
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
GATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTAAAGTAACTGAAGAATCACAAAA-A
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAA-AC
C-CCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACAGGGACGTGCATG----------
>LTR7up2_chr14_38190638_38196525_3465_transcribed_ZNF534_k4me3_TSS_KLF4_MED1_NANOG_44108_SOX2_FOXA1_7up_wanghigh_GRO1of7_7up_phylo____chr14_3819063838191083____1445
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CCCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAA-AC
C-CCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTCACTGACACT--TTTCGGACTCAGCCTGCCTGCACCC
AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGATGCGCATGA---------
>LTR7up2_chr2_64252414_64257646_3723_transcribed_ZNF534_k4me3_TSS_FOXP1_KLF4_MED1_NANOG_44108_SOX2_7up_wanghigh_GRO1of7_7up_phylo____chr2_6425241464252895____1447
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCCCG
TATATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCTTGC-CCCACCTTGACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CATCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAA-AC
C-CCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCTCCACCC-T-T-ATCTCCTTTTGCTGACTCTCTTTTCTGACTCAGCCCGCCTGCACCC
AGGAGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGATATGCATGA---------
>LTR7up2_chr19_20087687_20096781_5611_ZNF534_KAP1_EncodeTxn_KLF4_NANOG_7up_GRO1of7_C_7up_phylo___chr19_2009633620096781___1445
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------CTGCACG
TATATGCCCAGA------------------------------------------------
-----------------------------TGGTCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCAC---AGAAGTGTAAATGGCCAGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AATG-
GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGAATCAGCCCACCTGCACTC
AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACATGCATG----------
>LTR7up2_chr5_7263580_7269331_5029_transcribed_KAP1_k4me3_EncodeTxn_KLF4_MED1_NANOG_44108_SMAD11_FOXA1_7up_wanghigh_GRO1of7_7up_phylo____chr5_72635807264028____1448
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCATG
TATACTCCCAGA------------------------------------------------
-----------------------------TGGCCGGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ACATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCAGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AATCATCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTTCTTTACCTACCCA-AATCCTATAA-----------AATG-
GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTTGGACTCAGCCCACCTGCACCC
AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGATATGTGTGA---------
>LTR7up2_chr4_189479539_189485403_3269_ZNF534_EncodeTxn_KLF4_NANOG_7up_GRO4of7_C_7up_phylo___chr4_189484956189485403___1447
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------CTGCACG
TATACACCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---TACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTCTCCCGG--------------
----CTCATCCTGGCCC-AA-AATCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAA-AT
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AATG-
GCTCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCTGACTCAACCCACCTGCACAC
AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACACGCATG----------
>LTR7up2_chr2_165707552_165716198_5795_ZNF534_EncodeTxn_KLF4_NANOG_44108_7up_GRO3of7_C_7up_phylo___chr2_165715718165716198___1448
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGACATCACATCC
CCTGTGAC---------------------------------------------CTGCACT
TATATGCTCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACCAAAGAATCACAAAAAA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCATAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
TCTCTTTGACTGTAATTTTCCTTTACCTTCCCA-AATCCTATAA-----------AATG-
GCCCCACGC-T-T-ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA---------TTAAAAGCTTTATTGCTCACACAAACCCTG--TTT--GGTGGTCT
CTTCGCACAGACACGCATG----------
>LTR7up2_chr7_42870576_42876404_4614_ZNF534_KAP1_EncodeTxn_FOXP1_KLF4_NANOG_44108_7up_GRO3of7_C_7up_phylo___chr7_4287592442876404___1448
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATTGCATCC
CCTGTGAC---------------------------------------------CTGCATG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTAAAGTAACTAAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCTGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCTCTTTGACTGTAATTTTCCTTTACCTTCCCG-AATCCTATAA-----------AATG-
GCCCCACCA-T-T-ATCTCCCTTCACTGACCCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGTCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCACG----------
>LTR7up2_chrX_116812448_116818222_4861_ZNF534_k4me3_TSSflanking_FOXP1_KLF4_NANOG_44108_SOX2_7up_wanghigh_C_7up_phylo___chrX_116817774116818222___1448
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC
CCTGTGAC---------------------------------------------CTGCACA
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTAAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA---------TTAAAGGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATG----------
>LTR7up2_chr12_72215009_72215455_h3k27ac_TSSflanking_SOLO_FOXP1_KLF4_NANOG_SOX2_TCF4_7up_C_7up_phylo___chr12_7221500972215455___1446
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------CTGCACA
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTTGGACTCAGCCCACCTGCACCC
AGGTGA---------TTAAAAACTTTATTGCTCACACAAAGCCTG--TTT--CGTGGTCT
CTTCACACGGAC---CACAT---------
>LTR7up2_chr2_209299313_209304932_3249_transcribed_ZNF534_k4me3_TSS_FOXP1_KLF4_NANOG_44108_SOX2_TCF4_FOXA1_7up_wanghigh_GRO1of7_7up_phylo____chr2_209299313209299790____1446
-GTCAGTCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------CTGCACA
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTAAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCAGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACA-
GCCCCACCC-T-T-ATCTCCCTTCACTGACTCT--TTTCGGACTCAGCCCACCTGCACGC
AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATAA---------
>LTR7up2_chr11_96180740_96181218_h3k27ac_enh_SOLO_KLF4_NANOG_SOX2_TCF4_7up_C_7up_phylo___chr11_9618074096181218___1447
TGTCAGGCCTCTGAGCCCAAA-----------------------CCAAGCCATCACATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACGCCCAG-------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GATATTACACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAGA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTATACA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTCGCTGACT--CTTTTCGGACTCAGCCCGCCTGTACCC
AGGTGA---AA----TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACACACATG----------
>LTR7up2_chr4_16974834_16975319_h3k4me3_weakenh_SOLO_FOXP1_KLF4_NANOG_7up_7up_phylo____chr4_1697483416975319____1449
-GTCAGGCTTCTGAGCCCAAG-----------------------CCAAGCCATC-CATCC
CCTGTGAC---------------------------------------------CTGCACG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTAAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGA-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTCCCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA---AA----TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCACATGA---------
>LTR7up2_chr9_9041269590418349_3469_ZNF534_k4me3_EncodeTxn_FOXP1_KLF4_NANOG_OCT4_FOXA1_7up_GRO2of7__chr9_9041269590413144____1449
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------CTGCACG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAAGTAAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AA-CACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGGG--------------
---------------------------AC-CCCTACTCC-TGCCTGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCTCGCCTGCACCC
AGGTGA---AA----TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCAGACGGACGTGCATGA---------
>LTR7up2_chr14_98985205_98992939_4963_ZNF534_KAP1_EncodeRepressed_FOXP1_KLF4_NANOG_TCF4_7up_7up_phylo____chr14_9898520598985684____1448
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCG
CCTGTGAC---------------------------------------------CTGCACG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTAAAGAATCACAAAACA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCA--------------
---------------------------AC-CCCCACTCC-TGCCTGCGAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AGTCCTATAA-----------AACA-
GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACAGGGACGTGCATGA---------
>LTR7up2_chr1_114037075_114037525_h3k27ac_enh_SOLO_FOXP1_KLF4_MED1_NANOG_44108_SMAD11_TCF4_7up_7up_phylo____chr1_114037075114037525____1450
-GTCAGGCCTCTGAGCCCGAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------CTGCACG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTAAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCATA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-GCCCACTCC-TGCCTGCGAGAGAACAA-GC
CCTCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACA-
GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC
AGGTGA---AA----TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACGCGGACGTGCATGA---------
>LTR7up2_chr19_53831404_53837348_2169_ZNF534_k4me3_TSS_FOXP1_KLF4_NANOG_44108_7up_wanghigh_chimeric_GRO1of7_7up_phylo____chr19_5383140453831854____1450
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------CTGCACG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTAAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TACCCACCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
ACGTGA---AA----TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCGTGA---------
>LTR7up2_chr1_216145601_216152688_4682_ZNF534_k4me3_weakenh_KLF4_NANOG_44108_7up_wanghigh_7up_phylo____chr1_216145601216146051____1450
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------CTGCACG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTAAAGAATCACAAAAGA
AGTGA-----ATATGTCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCAGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TC--GTGAAAGTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCA--------------
---------------------------AC-CCCCACTCC-TACCTGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA---AA----TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATGA---------
>LTR7up2_chr8_34860187_34860639_h3k27ac_weakenh_SOLO_KLF4_NANOG_TCF4_7up_C_7up_phylo___chr8_3486018734860639___1448
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACGACCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAAAATCACAACAGA
AATGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCAGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAG
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCCGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA---------TTAAAAGCTTTATTGCTCACACAGAGCCTG--TTT--GGTGGTCT
CTTCACAGGGACGCGCATG----------
>LTR7up2_chr3_170681758_170689306_3291_ZNF534_KAP1_k27ac_weakenh_NANOG_44108_TCF4_C_7up_phylo___chr3_170688807170689306___1499
TGTCAGGCCTCTGAGTCCAAG-----------------------CCAAGCCATCACATCC
CCTGTGAC---------------------------------------------TTACATG
TATATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTC-------------------------------CACCACAAAAGAAGTGTAA
ATGGCTGGTCCTTG------------------CC----------TTAT----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AATCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAAAGAACAA-AT
CCCCTTTGACTGTAATTTTCCTTTACCTGCCCA-AATCTTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC
AGATGA---------TTGAAAGCTTTATTGCTCACACAAAGCCTG--TTT--CGTGGTCT
CTTCACACGGACACGCATG----------
>LTR7u1_chr5_97398953_97399401_h3k27ac_EncodeTxn_SOLO_NANOG_C_7up_phylo___chr5_9739895397399401___1448
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC
CCTGTGAC---------------------------------------------TTGCATG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAGAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTC-------------------------------CACCACAAAAGAAGTGAAA
ATGGCC----------------------------------------------GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTCTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCTACTCC-TGCCTGCCAGAGAACAA-AC
CCTCTTTGGCTGTAATTTTTCTTTACCTGCCCA-AATCTTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTTGGACTCAGCCGGCCTGCACCC
AGGTGA---------TTAAAAGCTTTATTGTTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACACCCATG----------
>LTR7u1_chr11_63529319_63529768_h3k27ac_TSS_SOLO_NANOG_44108_C_7up_phylo___chr11_6352931963529768___1448
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGGCATTGCATCC
CCTCTGAC---------------------------------------------TTGCACG
TATATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTC-------------------------------CACCACAAAAGAAGTGAA-
------GGTCCTTA------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCGTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AACCTCCCCAAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCA--------------
---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAA-AC
TCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCTCGCCTGCACCC
AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAACCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATG----------
>LTR7u1_chr4_14169948_14175976_3482_1_k4me3_EncodeTxn_KLF4_NANOG_44108_SMAD11_TCF4_FOXA1_7up_C_7up_phylo___chr4_1417552614175976___1449
TGTCAGGCCTCTGTGCCCAAG-----------------------CCAAGCCATTGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAATGCCCTGC-CCCGCCTTAACTGAT-----------------------
---GACATTC-------------------------------CACCACAAAAGAAGTGTA-
------GGTCCTTG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTCAAAGTCTTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AACCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCAGCCAGAGAACAA-AA
CCCCTTTGACTGTAATTTTCCTTTACCTGCCCA-AATCTTATAA-----------AACG-
GCCCCACCC-C---ATCTCCCTTAGCTGACTCTCTTTTCAGACTCAGCCCACCTGTACCC
AGGTGA---------TAAACAGCTTTATTGCTCATACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACGCGCATG----------
>LTR7u1_chr3_38070496_38076739_2846_ZNF534_ZNF90_KAP1_EncodeRepressed_FOXP1_KLF4_NANOG_7up_GRO4of7_C_7up_phylo___chr3_3807629038076739___1449
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGACATTGCATCC
CCTGTGAC---------------------------------------------TTGCATG
TATATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTC-------------------------------CACCACAAAAGAAGTGTA-
------GGTCCTTG------------------CC----------TTGA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACTTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCCACCCA-AATCTTATAA-----------AACA-
GCCCCACCC-C---ATCTCCCTTCACTGACTCTCTTTTCAGACTCAGCCCACTTGTACCC
AGGTGA---------TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCACATG----------
>LTR7u1_chr16_47167257_47167745_h3k27ac_EncodeTxn_SOLO_NANOG_SOX2_7up_phylo____chr16_4716725747167745____1488
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCACTGCATCC
CCTGTAAC---------------------------------------------TTGCACA
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACGGAAGAATCACAAAAGT
AGTGA-----ATATGCCCTGC-CCTGCCTTAACTGAT-----------------------
---GACATTC-------------------------------CACCACAAAAGAAGTGTAA
ATGGCCGGTCCTTG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCT----------------
------------GGCTCAAA-AACCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTT-GACTGTAATTTTCCTTTACCTACCCA-AAGCTTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTTGCTGACTCTCTTTTCAGACTCAGCCTGCCTGCACCC
AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCGTG--TTT--GGTGGTCT
CTTTACACGGACGCGCATGA---------
>LTR7u1_chr5_80185505_80185953_h3k27ac_enh_SOLO_NANOG_44108_SMAD11_TCF4_C_7up_phylo___chr5_8018550580185953___1447
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCTATCGCATCC
CCTGTGAC---------------------------------------------TTGCAGG
TATATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATGTGCCCTGC-CCCGCCTTAACTGAT-----------------------
---GACATTC-------------------------------CACCACAAAAGAAGTGTA-
------GGTCCTTG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGA--------------
----CTCATCCGGGGTCAAA-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-TCCCATTCC-TGCCCACCAGAGAACGA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTGCCCA-AATCTTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA---------TTAAAAGCTTTATTGCTCACACAA-GCCTG--TTT--GGTGGTCC
CTTCACACGGACGCGCATG----------
>LTR7u1_chr4_64737777_64738276_h3k27ac_enh_SOLO_NANOG_44108_SMAD11_SOX2_TCF4_7up_phylo____chr4_6473777764738276____1498
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC
CCTGTGAC---------------------------------------------TTGCACG
TATATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATGT-CCCTGC-CTCGCCTTAACTGAT-----------------------
---GACATTC-------------------------------CACCACAAAAGAAGTGTAA
ATGGCCAGTCCTTG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGA--------------
----CTCATCCTGGCTCAAA-AACCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAA-AC
CTTCTTTGACTGTAATTTTCCTTTACCTGCCCA-AATCTTATAA-----------AATG-
GCCCCACCC-T-T-ATCTCCCTTTGATGACTCTCTTTTTGGTCTCAGCCCGCCTGCGCAC
AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCGCACGGATGTGCATGA---------
>LTR7u1_chr18_27232260_27232705_weakenh_SOLO_NANOG_7up_phylo____chr18_2723226027232705____1443
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGACATCGCATCC
CCTGTGAC---------------------------------------------TTGCACA
TATATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAATGCCCTG------CCTTAACTGAT-----------------------
---GACATTC-------------------------------CACCACAAAAGAAGTGAAA
ATGGCCGGTCCTTG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCTAA-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAA-AC
CCTCTTTGACTGTAATTTTCCTTTAGGTACCCA-AATCTTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTTGGACTCAGCATGCCTGCACCC
AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGCGCATGA---------
>LTR7u1_chr14_82760153_82760600_EncodeRepressed_SOLO_KLF4_NANOG_C_7up_phylo___chr14_8276015382760600___1447
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCAGCGCATCC
CCTGTGAC---------------------------------------------TTGCACA
TATATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAGTCACAAAAGA
AGTGA-----AAATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTC-------------------------------CACCACAAAAGAAGTGTAA
ATGGCCGGTCCTTG------------------CC----------TTAA----GTGATGAC
GTT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTC-AA-AAACTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTTTGACTATAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTTGGACTCATCCCGCCTGCACCC
AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGCGCATG----------
>LTR7u1_chr5_3788374_3788823_TSSflanking_SOLO_NANOG_44108_C_7up_phylo___chr5_37883743788823___1448
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAATGCCCTGC-CCCGCCTTAACTGAT-----------------------
---GACATTC-------------------------------CACCACAAAAGAAGTGTAA
ATGGCTGGTCCTTG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCATTCC-TGCCCGCCAGAGAACAA-AT
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AATG-
GCCCCACCC-C-T-ATCTCTTTTCACTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC
AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCCG--TTT--GGTGGTCT
CTTCACACGGACGCGCATG----------
>LTR7u1_chr3_175827485_175836221_5203_ZNF534_EncodeRepressed_NANOG_GRO3of7_7up_phylo____chr3_175827485175827934____1448
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCATG
TATATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAGAAGA
AGTGA-----AAATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTC-------------------------------CACCACAAAAGAAGTGAAA
ATGGCTGGTCCTTG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAA-AC
CCCCTTTGACTATAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AATG-
GCCCCACCC-C-T-ATCTCCCTTCACTGACTCTCTTTTTAGACTCAGCCCGCCTGCACCC
AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACAGGGACGTGAGTGA---------
>LTR7u1_chr4_94166842_94167290_h3k27ac_EncodeTxn_SOLO_FOXP1_NANOG_C_7up_phylo___chr4_9416684294167290___1448
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACA
TAGACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTC-------------------------------CACCACAAAAGAAGTGTAA
ATGGCCGGTCCTTG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCGTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AATCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AATG-
GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA---------TTAAAAACTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATG----------
>LTR7u1_chr12_18195661_18203727_5214_KAP1_EncodeTxn_7up_phylo____chr12_1819566118196158____1446
---CAGGCCTCTGAGCCCAAG-----------------------CCAAACCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
AATTCACCCAGA------------------------------------------------
-----------------------------TGGCCTGAAATAACTGAAGAATCACAAAAGA
AGTGA-----AAATGCCCTGC-CCCAGCTTAACTGAT-----------------------
---CACATTC-------------------------------TACCACAAAAGAAGTGTAA
ATGGCTGGTCCTTG------------------CC----------TTAA----GTGATGAC
GTT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGC--------------
----CTCATCCTGGCTCAAA-AATCCCCCACAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACTTTGTG--------------
---------------------------AC-CCCCACTTC-TGCCCTCCACAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTGCCTACCCA-AATCTTATAA-----------AATG-
GCCCCACCC-C-T-ATCTCCCTTGGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGATGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTTATACGGACGCGCATGA---------
>LTR7u1_chrX_57338064_57338564_EncodeTxn_SOLO_NANOG_C_7up_phylo___chrX_5733806457338564___1448
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCAAG
TATATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAATGTCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTC-------------------------------CACCACAAAAGAAGTGTAA
ATGGCCAGTCCTTG------------------CC----------TTAA----GTGATTAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----TTCATCCTGGCACAAA-AATCTCCCACAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CTCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-CATCTTATAA-----------AATG-
GCCCCACAC-C-T-ATCTCCCTTTGCTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC
AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGTTCATG----------
>LTR7u1_chr1_242210318_242210868_h3k27ac_enh_SOLO_NANOG_7up_phylo____chr1_242210318242210868____1447
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCAGG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAATGTCCTGC-CCCGCCTTAACTGAT-----------------------
---GACATTC-------------------------------CACCACAAAGGAAGTGTCA
ATGGCTGGTCCTTG------------------CC----------TTAA----GTGATGGC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATTCTGGCTCAA--AATCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGGGAACAA-TC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AATG-
GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTTGGACTCAGCCTGCCTGCATCC
AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
TTTCATACGGATGTGCGTGA---------
>LTR7u1_chr16_9670530_9677301_2327_ZNF534_KAP1_k4me3_enh_NANOG_44108_wanghigh_GRO1of7_C_7up_phylo___chr16_96768229677301___1448
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGTATCC
CCTGTGAC---------------------------------------------TTGCACG
TATATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAATGCCCTGC-CCCGCCTTAACTGAT-----------------------
---GACATTC-------------------------------CACCACAAAAGAAATGTAA
ATGGCCAGTCCTTG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TACCCGCCAGAAAACAA-AC
CCCCTTTGACTGTAATTTTGCTTTACCTACCCA-AATCTTATAA-----------AATG-
GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACACACATG----------
>LTR7u1_chr1_173448417_173448865_enh_SOLO_NANOG_C_7up_phylo___chr1_173448417173448865___1448
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACT
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAATGCCCTGC-CCCGCCTTAACTGAT-----------------------
---GACATTC-------------------------------CACCACAAAAGAAGTGTAA
ATGGCCAGTCCTTG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-CATCCGCTAGAGAACAA-AC
CTCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AATG-
GCCCCACCC-C-T-ATCTCCCTTCTCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGG---------TTAAAAGCTTTATTGCTCACACAAAGCCTA--TTT--GGTGGTCT
CTTCACATGGACGCGCATG----------
>LTR7u1_chr18_42743802_42744300_h3k27ac_enh_SOLO_NANOG_44108_SMAD11_SOX2_TCF4_7up_phylo____chr18_4274380242744300____1447
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGTATCC
CCTGTGAC---------------------------------------------TTGCAGG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAATGCCCTGC-CCCGCCTTAACTGAT-----------------------
---TACATTC-------------------------------CACCACAAAAGAAGTGTAA
ATGGCAGGTCCTTG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------CT--GTGAAAGTACTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGTCTGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AATG-
GCCCCACCC-C---ATCTCCCTTTGCTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC
AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGCACATGA---------
>LTR7up2_chr11_27629072_27634926_3421_ZNF534_k4me3_TSS_FOXP1_KLF4_MED1_NANOG_44108_SOX2_TCF4_FOXA1_7up_wanghigh_C_7up_phylo___chr11_2763447927634926___1447
TGCCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC
CCTGTGAC---------------------------------------------TTGCACA
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTC-------------------------------CACCACAAAAGAAGTGTAA
ATGGCCAGTCCTTG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAA-CC
CCCCTTTGACTGTAATTTTCCCTTACCTACCCA-AATCCTATAA-----------ATT--
GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTCAGACTCAGCCCACCTGCACCC
AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACACACATG----------
>LTR7up2_chr18_5641543656421341_3515_ZNF534_ZNF90_KAP1_EncodeTxn_KLF4_NANOG_OCT4_7up_GRO2of7__chr18_5641543656415883____1447
-GTCAGGCCTCTGAGGCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGC-----ATATGCCTTGC-CCCACCTTAACTGAT-----------------------
---GACATTC-------------------------------CACCATAAAAGAAGTAGAA
ATGGCCGGGCCTTG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-ACCCACTCC-TGCCTGCCAGAGAACAA-CC
CCCCTTTGACTGCAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACA-
GCCCCACCC-C---ATCTCCCTTCACTGACTCTCTTTTCAGACTCAGCCCACCTGCACCC
AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--GTT--GGTGGTCT
CTTCACACGGACACGCATGA---------
>LTR7up2_chr16_59514911_59522964_5304_1_NANOG_GRO3of7_C_7up_phylo___chr16_5952252959522964___1397
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC
CCTGTGAC---------------------------------------------TTGCACA
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCC-----AACTG-------------------------
------------------------------------------------------------
--------TCCTTG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTT-------------------
---------CCTGGCTCAAA-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCAGACTCAGCCCACCTGCACCC
AGGTGA---------TTAAAAGCTTTATTGCTCACGCAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCACATG----------
>LTR7u1_chr12_123104300_123104799_h3k27ac_weakenh_SOLO_FOXP1_KLF4_NANOG_44108_7up_phylo____chr12_123104300123104799____1448
-GTCAGGCCTCTGAGCCCGAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACC
TATACGCCCAGA------------------------------------------------
-----------------------------CGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCGCCTTAACTGAT-----------------------
---GACATTC-------------------------------CACCACAAAAGAAGTATAA
ATGGCCGGTCCTTG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACA-
GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCTGATTCAGCCCGCCTGCACCC
AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACACACATGA---------
>LTR7u1_chr20_32787739_32788208_EncodeTxn_SOLO_NANOG_C_7up_phylo___chr20_3278773932788208___1449
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
CATAAGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTC-------------------------------CACCATAAAAGAAGTATAA
ATGGCCGGTCCTTG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATCCCTTTTCCTGG--------------
----CTCCTCGTGGCTCAAA-AAACTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGAG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTAGAA-----------AATG-
GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTT-GGACTCAGCCCACCTGCACTC
AGGTGA---------TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGGCGTACATG----------
>LTR7u1_chr4_81420796_81421243_EncodeTxn_SOLO_NANOG_7up_phylo____chr4_8142079681421243____1447
-GTCAGGCCTCTGAGCCCAAA-----------------------CCAAGCCATCGCTTCC
CCGGTGAC---------------------------------------------TTGCACG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAACCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTC-------------------------------CACCCCGAAAGAAGTGAAA
ATGGCCGGTCCGTG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-CC
CCCCTTTGACTATAATTTTCCTTTCCTTACCCA-AATCTTATAA-----------AATG-
GCCCCACCC-C---ATCTCCCTTTGCTGACTCTCTTTTCGGATTCAGCCCGCCTGCACCC
AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATGA---------
>LTR7u1_chr8_43116803_43117302_EncodeTxn_SOLO_NANOG_C_7up_phylo___chr8_4311680343117302___1498
-GTCAGGCTTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACA
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATTTGCCCTGC-CCCGCCTTAACTGAT-----------------------
---GACATTC-------------------------------CACCACAAAAGAAGTGAAA
ATGGCCAGTCCTTG------------------CC----------TTAA----GCGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCACCACAGAACAA-AC
CCCCCTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AATG-
GCCCTACCC-C-T-ATCTCCCTTGGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA---------TTAAATGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACATGCATG----------
>LTR7u1_chrX_12310027_12310475_EncodeTxn_SOLO_NANOG_44108_C_7up_phylo___chrX_1231002712310475___1447
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCT-TGAC---------------------------------------------TTGCACG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTC-------------------------------CACCACAAAAGAAGTGAAA
ATGGCCGGTCCTTG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCACCAGATAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCTCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCAGACTCAACCCGCCTGCACCC
AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTC--GGTGGTCT
CTTCACATGGACGTGCATG----------
>LTR7u1_chr10_101201003_101201451_EncodeTxn_SOLO_C_7up_phylo___chr10_101201003101201451___1447
TGTTAGGCCTCTGAGCCCAAG-----------------------CCAAGCCGTGGCATCC
CCCGTGAC---------------------------------------------TTGCATG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAATACCCTGC-CCTGCCTTAACTGAT-----------------------
---GACATTC-------------------------------CACCACAAAAAAAGTGAAA
ATGGCCGGTCCTTG------------------CC----------TTAG----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AA-CTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CATTTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAGCAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG-
GCCCCACCC-C-T-GTCTCCCTTCGCTGACTCCCTTTTCAGACTCAGCCCGCCTGCACCC
AGGTGA---------TTAAAAGTTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGGCGCGCATG----------
>LTR7u1_chr19_20059608_20060058_EncodeTxn_SOLO_NANOG_7up_phylo____chr19_2005960820060058____1448
-GTCAGGCCTCTGAGCCCAAG-----------------------CCTAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCATG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATAACAAAAGA
AGTGA-----AAATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTC-------------------------------CACCACAAAAGAAGTGAAA
ATGGCCGGTCCTTG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCTCCGCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACCTTGTG--------------
---------------------------AC-CTCCACTCC-TGCCCGCCAGAGAAAAA-AC
CCCCTTTGACTGTAATTTTCCTCCACCTACCGA-AATCTTATAA-----------AACA-
GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAACCTG--TTT--GGTGGTCT
CTTCACATGGACGTGCATGA---------
>LTR7u1_chr2_227444484_227444932_EncodeRepressed_SOLO_NANOG_C_7up_phylo___chr2_227444484227444932___1448
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC
CCTGTGAC---------------------------------------------TTGCACT
TATACACCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAATGCCCTGC-CCCGCCTTAACTGAT-----------------------
---GACATTC-------------------------------CACCACAAAAGAAGTGAAA
ATGGCCAGGCCTTG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CTCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AATG-
GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC
AGGTGA---------TTGAAAGCTTTATTGCTCACACAAAGCCTA--TTT--GGTGGTCT
CTTCACACGGACACGCATG----------
>LTR7u1_chrY_19411964_19427738_4759_1_k27ac_NANOG_GRO3of7_7up_phylo____chrY_1941196419412464____1499
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGACATTGCATCC
CCTGTGAC---------------------------------------------TTGAACA
TATACGCCTAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAATGCCTTGC-CCTGACTTAACTGAT-----------------------
---GACATTCTAACACAAAAGAAGTGTAAATGGCCGGTCCTTAACACAAAAGAAGTGAAA
ATGGCCGGTCCTTG------------------CC----------TTAC----GTGGTGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGATCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCACTAGAGAACAA-AC
CGCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACA-
GCCCCACCC-C-T-ATCTCCCTTCACTGACTGTCTTTTCAGACTCAGCCGGCCTGCCCCC
AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--AGTGGTCT
CTTCACACAGATACGCATGA---------
>LTR7u1_chr3_112399751_112400198_h3k27ac_enh_SOLO_NANOG_7up_phylo____chr3_112399751112400198____1447
-GTCAGACCTCTGAGCCTAAA-----------------------CCAAGCCATCGCAACC
TTTGTGAC---------------------------------------------TTGCCCT
TATACACCTAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAATGCCCTGC-CCCGCCTTAACTGAT-----------------------
---GACATTCCAC-------------------------------CACAAAAGAAGTGAAA
ATGGCCGGTCCTTG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AA-CTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCCTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACA-
GCCCCACCC-C-T-ATCTCCCTTCACTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC
AGGTGA---------TTAAAACCTTTATTGCTCACACGAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGCGCATGA---------
>LTR7u1_chr7_32514434_32514933_h3k27ac_EncodeTxn_SOLO_NANOG_7up_phylo____chr7_3251443432514933____1499
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATATGCCCAGA------------------------------------------------
-----------------------------TGGCCTAAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAATGCCCTGC-CCCGCCTTAACTGAT-----------------------
---GACATTCTACCACAAAAGAAGTGTAAATGGCCGGTCCTCCCCACAAAAGAAGTGAAA
ATGGCCGGTCCTTG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAGA-AACCTTCCTTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTCGTG--------------
---------------------------AC-CCCCACTCC-TACCCGCCAGAGAACAA-AC
ACCCTTTGACCGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACA-
GCCCCACCC-C-T-ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACACGCATGA---------
>LTR7up2_chr4_125561620_125567456_4857_ZNF534_ZNF90_KAP1_EncodeRepressed_FOXP1_KLF4_NANOG_44108_TCF4_FOXA1_7up_C_7up_phylo___chr4_125567008125567456___1448
TGTTTGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TGGCACG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
----------------------------------------------------CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-CC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACGCGCATG----------
>LTR7up2_chr9_80137295_80143148_3406_ZNF534_KAP1_EncodeTxn_FOXP1_KLF4_NANOG_FOXA1_7up_GRO3of7_7up_phylo____chr9_8013729580137741____1446
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATATGTCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTAAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAGTGGCCGGTCCT-------------------
----------------------------------------------------CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCA--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-CC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTT--CAGACTCTCTTTTCAGACTCAGCCCACCTGCACCC
AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGCGCATGA---------
>LTR7up2_chr7_125909965125915739_4678_ZNF534_KAP1_EncodeTxn_FOXP1_KLF4_NANOG_OCT4_FOXA1_7up_GRO2of7__chr7_125909965125910413____1448
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC
CCTGTGAC---------------------------------------------TTGCACA
TATATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
----------------------------------------------------CTGTTGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-CC
CCCCTTTGACTGTAATATTCCTTTATCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTTGGACTCAGTCCACCTGCACCC
AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACAGGGACGTGCATGA---------
>LTR7up2_chr6_14296942_14302823_3454_ZNF534_k4me3_KLF4_NANOG_44108_SOX2_7up_wanghigh_GRO3of7_C_7up_phylo___chr6_1430237614302823___1446
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACA
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTG------ATATGCCTTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCTGGTCCT-------------------
----------------------------------------------------GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGC--------------
----CTCATCCTGGCTCAAA-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCT-TGCCCGCCAGAGAACAA-CC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCACTGACTCT--TTTCGGACTCAGCCCACCTGCACCC
AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGCGCATGA---------
>LTR7up2_chr20_12752946_12753392_h3k27ac_enh_SOLO_KLF4_NANOG_44108_7up_proto7y____chr20_1275294612753392____1444
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC
CCTGTGAC---------------------------------------------TTGGACA
TACACGCCCACA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAG-
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCTACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
----------------------------------------------------GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AT-CACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CAC-ACTC--TGCCCGCCAGAGAACAA-CC
CACCTTTGACTATAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AATG-
GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCAGACTCAGCCCACCTGCGCCC
AGGTGA---------TTAAAAGCTTTATTGCTCGCACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGATGCGCATGA---------
>LTR7u1_chrY_15692217_15692720_SOLO_NANOG_C_7up_phylo___chrY_1569221715692720___1498
TGTCAGGCCTCTAAGCCCAAG-----------------------CCAAGCCATCATATCC
CCTGTGAC---------------------------------------------TTGCACA
TATATGTCCAGA------------------------------------------------
-----------------------------TGGCTTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CTCGCCTTAACTGAT-----------------------
---GACATTGCACCACAAAAGAAGTGTAAATGGCCGGTCCTCACCACAAAAGAAATGAAA
ATGTCTGATCCTTG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCACA-AATCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AT-CCCCACTCC-TGCCTGCCAGAGAACAA-AC
TCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AATG-
GCCCCACCC-C---ATCTCCCTTCACTGACTCTCTTTTTGAACTCAGCCCGCCTTCACTC
AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
TTTTACACAAACGCGCATG----------
>LTR7u1_chr11_68622705_68632796_3949_ZNF534_ZNF90_KAP1_EncodeTxn_7up_phylo____chr11_6862270568623198____1493
-GTCAGGCCTCTGAGACCAAG-----------------------CCAAGCCATCACATCC
CCTGTGAC---------------------------------------------TTGCACA
TATACACCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----TTATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACACTCCACCACAAAAGAAATGAAAATGGCTGGTCCTCACCACAAAAGAAGTGTAA
ATGGCCAGTCCTTG------------------CC----------TTAA----GTGATGAC
GTT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AGCCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGAG--------------
---------------------------AC-CCCCACTCC-TGCTCGCCAGAGAACAA-AC
CCCCTTTG----TAATTTTCCTTTACCTACACA-AATCTTATAA-----------AATG-
GCCCCACCC-C---ATCTCCCTTTGCTGACTCT--TTTTGGACTCAGCCCGCCTGCACCC
AGGTGA---------TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--AGTAGTCT
CTTCACATGGACGCGCATG----------
>LTR7u1_chr10_9080728990812809_3579_ZNF534_ZNF90_KAP1_EncodeTxn_GRO2of7__chr10_9080728990807737____1397
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTCAC---------------------------------------------TTGCACG
TACACACCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CTC-----------------------------------
------------------------------------------------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-A-CCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCA--------------
---------------------------AC-CCCTACGCC-TGCTCGCCAGAGAACAA-AA
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATATTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCAGGCACCC
AGGTGA---------TTAAAAGCTGTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATGA---------
>LTR7u1_chr10_90812810_90813258_EncodeTxn_SOLO_NANOG_44108_SMAD11_SOX2_TCF4_proto7y____chr10_9081281090813258____1397
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACA
TATTCGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCC-----------------------------------
------------------------------------------------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-A-CCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCA--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTTTGACTGTCATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTCAGACTTAGCCCGCCTGCACCC
AGGTGA---------TTAAAAGCTGTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATGA---------
>LTR7up1_chr1_215410117_215415683_3446_1_k4me3_EncodeRepressed_KLF4_NANOG_SOX2_TCF4_7up_GRO5of7_GRO6of7_GRO7of7_C_7up_phylo___chr1_215415235215415683___1448
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------CTGCACG
TATACGCCCAGA------------------------------------------------
-----------------------------TGACCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATAGGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGGAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCA--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCC-AATCGTATAA-----------AACA-
GCCCCATCC-T-T-ATCCCCCTTCGCTGA--CTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATA----------
>LTR7up1_chr2_187557941_187566148_5677_ZNF534_k4me3_TSS_KLF4_NANOG_44108_TCF4_7up_wanghigh_chimeric_C_7up_phylo___chr2_187565698187566148___1450
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------CTGCACA
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCA--------------
---------------------------GC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTGGCTGACTCTCTTTTCCAACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGTCATGTCGCTAACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGCGCGTG----------
>LTR7up1_chr1_209448805209454002_3258_ZNF534_k4me3_EncodeRepressed_FOXP1_KLF4_NANOG_OCT4_SOX2_TCF4_7up_GRO2of7__chr1_209448805209449256____1450
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC
CCTGTGAC---------------------------------------------CTGCACC
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----ATCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCTACTCC-TTCCCGCCAGAGAACAA-AC
CCCCTTTGACGGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTGGGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATGA---------
>LTR7up1_chr9_121790002_121796769_1834_ZNF534_KAP1_k4me3_EncodeRepressed_FOXP1_KLF4_NANOG_44108_7up_GRO3of7_7up_phylo____chr9_121790002121790450____1448
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------CTGCACG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGAAACTGAAGAATCACAAAAGA
AGTGA-----ATACGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----TTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCC-ACTCC-TGCCCGCCAGAGAACAA-AC
CCCC-TTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCATATGGACGCGCATGA---------
>LTR7up1_chr3_149196809_149197259_h3k27ac_TSS_SOLO_FOXP1_KLF4_MED1_NANOG_44108_SMAD11_SOX2_TCF4_7up_7up_phylo____chr3_149196809149197259____1450
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAATGTAAATGGCCGGTCTT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACAC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
GGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGCGCATGA---------
>LTR7up1_chr15_96871837_96877667_3509_ZNF534_k4me3_weakenh_FOXP1_KLF4_NANOG_44108_FOXA1_7up_wanghigh_C_7up_phylo___chr15_9687721796877667___1450
TATCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------CTGCACG
TATGCGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTAAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACGCCAAAAGAACTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TACCTGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGCACATG----------
>LTR7up1_chr10_25768956_25774917_2169_ZNF534_KAP1_EncodeTxn_KLF4_NANOG_7up_GRO3of7_C_7up_phylo___chr10_2577443625774917___1450
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------CTGCACA
TATACGCCAAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTAAAGAATCACAAAATA
AGTGA-----ATATGCCCTAC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAT
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCGTTTACCTACCCA-AATCCTATGA-----------AACA-
GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACTCGAGTG----------
>LTR7up1_chr4_61764218_61770025_3585_ZNF534_KAP1_k4me3_TSS_FOXP1_KLF4_NANOG_44108_SMAD11_FOXA1_7up_wanghigh_C_7up_phylo___chr4_6176954361770025___1448
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGTATCC
CCTGTGAC---------------------------------------------CTGCACC
TGTACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTAAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCAGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCCAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTTGGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCTCACCC-T-T-ATCTCCCTTCACTGACCC--TTTTCGGACTCAGCCTGCCTGCACCC
AGGTGA-----AG--TGAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGCGCATG----------
>LTR7up1_chrY_5324787_5330427_3166_1_k4me3_KLF4_NANOG_44108_TCF4_7up_wanghigh_C_7up_phylo___chrY_53299785330427___1420
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------CTGCACG
TATATGCCCGGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTAAAGAATCACAAAAGA
AGTGA-----AAATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
GTT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGATCAGA-A--------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------------ACTCC-TACCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATG----------
>LTR7up1_chrX_9210024092105917_3253_ZNF534_k4me3_weakenh_FOXP1_KLF4_MED1_NANOG_OCT4_FOXA1_7up_wanghigh_chimeric_GRO2of7__chrX_9210543792105917___1449
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------CTGCAC-
TATATGCCCGGA------------------------------------------------
-----------------------------TGGCCTGAACTAACTAAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TACCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCCGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATG----------
>LTR7up1_chr5_44236340_44236852_weakenh_SOLO_KLF4_NANOG_44108_7up_7up_phylo____chr5_4423634044236852____1450
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------CTGCACG
TATATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTAAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATG---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TACCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCTTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
TTTCACACGGACGCTCATGA---------
>LTR7up1_chr12_73000876_73001358_h3k27ac_EncodeTxn_SOLO_KLF4_NANOG_44108_7up_7up_phylo____chr12_7300087673001358____1448
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAT---------------------------------------------CTGCACG
TATATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTAAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----TTGATGAC
GTT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAACACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC---CCACTCC-TACCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCGCCACCC-T-T-ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGCTGCTCACATAAAGCCTG--TTT--GGTGGTCT
CTTCACAAGGACGCGCATGA---------
>LTR7up1_chr9_1294834512954128_3374_ZNF534_KAP1_k4me3_EncodeTxn_FOXP1_KLF4_NANOG_OCT4_FOXA1_7up_wanghigh_GRO2of7__chr9_1294834512948825____1449
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC
CCTGTGAC---------------------------------------------CTGCACG
TATATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTAAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCAGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCAACTCC-TACCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCT-T-T-ATCTCCCTCCGCTGACTCTCTTTTCGGACTCAG-GCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--TGTGGTCT
CTTCACACGGACGCGCATGA---------
>LTR7up1_chr16_13352583_13358061_3395_ZNF534_k4me3_enh_FOXP1_KLF4_NANOG_44108_SOX2_TCF4_FOXA1_7up_wanghigh_GRO1of7_C_7up_phylo___chr16_1335757613358061___1449
TGTCAGGCCTCTAAGCCCAAG-----------------------CCAAGCCATCACATCC
CCTGTGAC---------------------------------------------CTGCACG
TATATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTAAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCAT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TACCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTATCCA-AATCCTATAA-----------AACG-
GCCCCACC--C-T-ATGTCCCTTCGCTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATG----------
>LTR7up1_chr19_22568270_22575020_3308_ZNF534_EncodeTxn_KLF4_NANOG_TCF4_7up_7up_phylo____chr19_2256827022568751____1450
-GTCAGGCCTCTGAGCCCAAG-----------------------GCAAGCCATCGCATAC
CCTGTGAC---------------------------------------------TTGCACG
TATACACCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTAAAGAATCACGAAAGA
AGTAA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------AAC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TACCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTCCCCA-AATCCTATAA-----------AATG-
GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAACCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCACATGA---------
>LTR7up1_chr12_59323188_59328986_3533_ZNF534_k4me3_weakenh_FOXP1_KLF4_NANOG_44108_SOX2_TCF4_7up_wanghigh_C_7up_phylo___chr12_5932850559328986___1450
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------CTGCACG
TATACACCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTAAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACACTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTCTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCCTGTG--------------
---------------------------AC-CCCCACTCC-TACTCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGCCTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCACATG----------
>LTR7up1_chr3_54634484_54640204_3356_ZNF534_k4me3_enh_KLF4_MED1_NANOG_44108_SOX2_TCF4_7up_wanghigh_chimeric_C_7up_phylo___chr3_5463975354640204___1450
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTATGAC---------------------------------------------ATGCACG
TACACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCAGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCGCTCC-TACCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTAACCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTCGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATG----------
>LTR7up1_chr5_147869836_147874526_2830_transcribed_ZNF534_k4me3_TSS_FOXP1_KLF4_MED1_NANOG_44108_SMAD11_SOX2_TCF4_7up_wanghigh_chimeric_GRO1of7_C_7up___chr5_147874078147874526___1448
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGTATCC
CCTGTGAC---------------------------------------------TTGCACG
TATAAGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCAGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCTTGA--------------
----CTCATCCTGGCTCAAA-AAGCAC--CCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCC--------------
---------------------------AC-CCCCACTCC-TACCCGCCAGAGAACAA-AC
TCCCTTTAACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATG----------
>LTR7up1_chr8_127431703127437464_4857_ZNF534_EncodeRepressed_KLF4_NANOG_FOXA1_7up_GRO2of7__chr8_127431703127432147____1444
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCCCATCC
CCTGTGAC---------------------------------------------TTGAA--
TA----CCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCAGTCCT-------------------
------------TG------------------CC----------TTAA----GTGGTGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAATCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATGA---------
>LTR7up1_chr8_97200770_97206656_3642_ZNF534_ZNF90_KAP1_EncodeTxn_FOXP1_NANOG_44108_7up_GRO1of7_7up_phylo____chr8_9720077097201220____1450
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGTCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACACCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACCAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCAGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------CCC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-AGCCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTCGCTGACTATCTTTTCGGACTCAGCCTGCCTGCAACC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGTGCATGA---------
>LTR7up1_chr4_8482399_8488709_3142_ZNF534_ZNF90_KAP1_EncodeTxn_KLF4_NANOG_7up_wangmod_GRO1of7_C_7up_phylo___chr4_84882628488709___1447
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TGTATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGAGGCAAA-AAGCTTCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------G---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGTCCACCAGAGAACAA-AC
CTCCTTTGACTGTAATTTTCCTTTACCTAACCA-AATCTTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCGCTGACTC---TTTTGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCTCATG----------
>LTR7up1_chr17_54345638_54346137_h3k27ac_EncodeTxn_SOLO_NANOG_SOX2_7up_7up_phylo____chr17_5434563854346137____1448
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAATAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CTTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCTGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
GTT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCTCCCCAAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCA--------------
---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTGCCCA-AATCTTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCGCTTCACTGACTTTCTTTTTGGACTCAGCCCGCCTGCACCC
AGGGGA-----AA--TTAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGATGCGCAT-----------
>LTR7up1_chr18_57064649_57072502_4950_ZNF534_k4me3_EncodeRepressed_KLF4_NANOG_TCF4_7up_GRO3of7_C_7up_phylo___chr18_5707205257072502___1450
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATTGCATCC
CCTGTGAC---------------------------------------------TTGCATG
TACATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAATGCCCTGC-CCCGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCTGGTCCT-------------------
------------TC------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTGCCCA-AATCTTATAA-----------AACA-
GCCCCACCC-C-T-ATCTCCCTTCGCTGACTGTCTTTTTGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCTCATG----------
>LTR7up1_chr2_199179365_199185671_4843_ZNF534_ZNF90_KAP1_k4me3_EncodeTxn_KLF4_NANOG_7up_7up_phylo____chr2_199179365199179814____1449
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACC
TATATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAATGCCCTGC-CCCGCCTTAACTGAT-----------------------
---GACATTCCACCTCAAAAGAAATGTAAATGGCTGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCTTTTTCCTGG--------------
----CTCATGATGGCTCAAA-AA-CACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCAACCC-TGCCCACCAGAGAACAA-AT
CCCCTTTGACTGTAATTTTTCTTTATCTGCCCA-AATCTTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCGATGACTGTCTTTTCGGACTCAGCCTGCCTGCCCCC
CTGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGATGCGAGTGA---------
>LTR7up1_chr2_209078020_209084376_4940_ZNF534_EncodeTxn_FOXP1_NANOG_FOXA1_7up_GRO3of7_7up_phylo____chr2_209078020209078469____1449
-GTCAGGTCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTCTGAC---------------------------------------------TTGCAGG
TATATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAATGCCCTGC-CCCGCCTTAACTGAT-----------------------
---GACATTCCACCAAAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCTTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AA-CTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTGCTTTACCTGCCCA-AATCTTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCTCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGATGTGCATGA---------
>LTR7up1_chr3_177665834_177671132_3349_1_EncodeTxn_NANOG_FOXA1_7up_GRO4of7_C_7up_phylo___chr3_177670681177671132___1449
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCACTGCATCC
CCTGTGAC---------------------------------------------TTGCACA
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCAAAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------AC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTTCTGG--------------
----CTCATCCTGGCTCAAA-AA-CTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCT--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTCTGACTGTAATTTTCCTTTACCTGCCCA-AATCTTATAA-----------AATG-
GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGCGCATG----------
>LTR7up1_chr1_229696942_229697395_enh_SOLO_KLF4_NANOG_7up_7up_phylo____chr1_229696942229697395____1449
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAAT-CCCTGC-CCCGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACT--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCA--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTGCCCA-AATCTTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTGGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCGCCC
AGGTGA-----AA--TCAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGCGAGTGA---------
>LTR7up1_chr13_96001094_96001549_enh_SOLO_KLF4_NANOG_7up_7up_phylo____chr13_9600109496001549____1449
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----ATGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCTCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTGCCCA-AATCTTATAA-----------AACG-
GCCCCACCC-C---ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATGA---------
>LTR7up1_chr3_185949808_185950258_h3k4me3_EncodeTxn_SOLO_KLF4_NANOG_7up_7up_phylo____chr3_185949808185950258____1450
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCCGTGAC---------------------------------------------TTGCACG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAATCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGAG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CTCCTTTGACTGTAATTTTCCTTTGCCTGCCCA-AATATTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCACTGACTCTCTTTTCGGACACAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACAGGGACGTGCATGA---------
>LTR7up1_chr1_207633751_207634199_h3k27ac_enh_SOLO_FOXP1_KLF4_NANOG_44108_SOX2_TCF4_7up_C_7up_phylo___chr1_207633751207634199___1448
TGTCAGGCCTCTGAACCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACACCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAATGCCCTGC-CCCGCCTTTACTGAT-----------------------
---GACATTCCACCACAAAAGAAATGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTTC-TGCCCGCCAGAGAACAA-AG
CCCCGTTGACTGTAATTTTCCTTTACCTGCCCA-AATCTTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCT--TTTCAGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGATCT
CTTCACAGGGACGTGCATG----------
>LTR7up1_chr4_179166476179170568_3066_ZNF534_k4me3_TSS_KLF4_NANOG_OCT4_7up_wanghigh_GRO2of7__chr4_179170120179170568___1448
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCATG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCCAAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GATATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAAAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTT--GGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACAGGGACGCGCATG----------
>LTR7up1_chr5_136551572_136552022_h3k27ac_EncodeRepressed_SOLO_KLF4_NANOG_7up_C_7up_phylo___chr5_136551572136552022___1450
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACACCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATACGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCTGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAT
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAATCCTTTTCCTGC--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAA----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTGTAA-----------AACA-
GCCCCACCC-T-T-ATCTCCCTTCCCTGACTCTCTTTTCGGACTCAGCCCCCCAGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAACCTG--TTT--GGTGGTCT
CTTCACGCAGACACACATG----------
>LTR7up1_chr11_6069822_6075884_3302_ZNF534_EncodeTxn_FOXP1_KLF4_NANOG_7up_C_7up_phylo___chr11_60754346075884___1450
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC
CCTGTGAC---------------------------------------------TTGCACG
TATATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTGTAA-----------AACG-
GTCCCACCC-T-T-ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACGCGCATG----------
>LTR7up1_chr12_72703222_72708969_3542_ZNF534_ZNF90_KAP1_EncodeRepressed_KLF4_NANOG_7up_7up_phylo____chr12_7270322272703672____1450
-GTCAGGCCTTTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATAGGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCTTGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CATCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAAAAA-AC
CCCGTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTCACTGACTCTCTTTTCCGACTCAGCCCGCCTGCATCC
AGGTGA-----AA--TGAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTTACACGGACACGCATGA---------
>LTR7up1_chr4_79553970_79559709_4752_ZNF534_k4me3_EncodeRepressed_KLF4_NANOG_SOX2_FOXA1_7up_wanghigh_GRO3of7_C_7up_phylo___chr4_7955926079559709___1449
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC
CCTGTGAC---------------------------------------------TTGCCGG
TATATGCCCTGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGACTGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTAG--------------
----CTCATCCTGGCTCAAA-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CATCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCACTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGATGCGCATG----------
>LTR7up1_chr3_148414244148420096_3502_ZNF534_KAP1_EncodeTxn_KLF4_NANOG_OCT4_7up_GRO2of7__chr3_148414244148414694____1450
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATTC
CCTGTGAC---------------------------------------------TTGCACA
TATATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCTTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCTGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCTTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CATCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAA-CC
CCCCTTTGACTATAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCAGACTCAGCCCGCCTGTACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACATACACGCATGA---------
>LTR7up1_chr9_82883733_82889489_4706_ZNF534_k4me3_enh_FOXP1_KLF4_NANOG_44108_SMAD11_SOX2_TCF4_FOXA1_7up_wanghigh_GRO1of7_7up_phylo____chr9_8288373382884183____1449
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCGCCTTAACTGGT-----------------------
---GATATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTAACCA-AATCCTATAA-----------AACG-
GCCCCACCC-C---ATTTCCCTTTGCTGACTCTCTTTTCAGACTCAGCCCACCTGCCCCC
AGGTGA-----AA--TAAACTGCCATGTTGCTCACACAAAGCATG--GTT--CGTGGTCT
CCTCACACAGACGCACATGA---------
>LTR7up1_chrX_142563684_142564133_EncodeTxn_SOLO_NANOG_7up_7up_phylo____chrX_142563684142564133____1448
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAGGA
AGTGA-----AAATGCTCTGC-CCCGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAACTGGCTGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGA-AGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CATCTCGTG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTGCCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C---ATCTCCCTTCGCTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--AGTAGTCT
CTTCACACAGACACCCATGA---------
>LTR7up1_chr4_156600196_156606034_3670_ZNF534_ZNF90_KAP1_EncodeTxn_KLF4_NANOG_44108_7up_7up_phylo____chr4_156600196156600646____1450
-GTCAGGCCTCAGAGCCCAAG-----------------------CTAAGCCATCGTATCC
CCTGTGAC---------------------------------------------TTGCACG
TATATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATGTGCCCTGC-CCCGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCTGGTCCC-------------------
------------TG------------------AC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--CTGGAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCACAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTTTGACTATAATTTCCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTAGCTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACAAGGACGCGCAGGA---------
>LTR7up1_chr1_99509511_99515367_3378_ZNF534_ZNF90_KAP1_EncodeTxn_KLF4_NANOG_SOX2_TCF4_FOXA1_7up_7up_phylo____chr1_9950951199509963____1450
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCATATCC
CCTGTGAC---------------------------------------------TTGCACG
TATATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCTACCACAAAAGAAGTGTAAATGGCCTGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------GC-CCCCACTCC-TGCCCACCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTGCCTTTGCTGACTCTCTTTTCAGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGTGCATGA---------
>LTR7up1_chr6_10575556_10576054_h3k27ac_EncodeTxn_SOLO_KLF4_NANOG_7up_7up_phylo____chr6_1057555610576054____1449
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC
CCTGTGAC---------------------------------------------TTGCACG
TATATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCTTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTGA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCGTCCTGGCTCAAA-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG-
GCCCCACCC-C---ATCTCCCTTTGCTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGTGCATGA---------
>LTR7up1_chr1_64349943_64355761_4830_ZNF534_k4me3_weakenh_KLF4_NANOG_SOX2_TCF4_7up_GRO4of7_C_7up_phylo___chr1_6435531864355761___1443
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATTGCATCC
CCTGTGAC---------------------------------------------TTGCAC-
------TTCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTTACTGAAGAATTACAAAAGA
AGTGA-----ATATGCTCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACT--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTTGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTC--TTT--GGTGGTCT
CTTCACACGGACGCGCATG----------
>LTR7up1_chr6_142649498_142649948_h3k27ac_enh_SOLO_KLF4_NANOG_7up_7up_phylo____chr6_142649498142649948____1450
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATTGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACGTCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCTCTGC-CCCATCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCTGGTCCT-------------------
------------CG------------------CC----------TTAA----GTGATGAT
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAGA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-CC
CCCCTTTGACTATAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTA--TTT--GGTGGTCT
CTTCACACGGACGCACATGA---------
>LTR7up1_chr2_75213731_75219537_3297_ZNF534_ZNF90_KAP1_EncodeRepressed_FOXP1_KLF4_NANOG_7up_GRO5of7_GRO6of7_GRO7of7_C_7up_phylo___chr2_7521908775219537___1450
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACA
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAC-----------------------
---CACATTCCACCACAAAAGAAGTGTAAATGGCTGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCCGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAA-CC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTGTAA-----------AATG-
GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCCG--TTT--GGTGGTCT
CTTGACACGGACGCGCATG----------
>LTR7up1_chr1_185948279_185954216_3622_ZNF534_KAP1_k4me3_EncodeRepressed_FOXP1_KLF4_NANOG_44108_SMAD11_7up_chimeric_C_7up_phylo___chr1_185953764185954216___1450
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACA
TATACTCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCAAAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAA-CC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGATGCGCATG----------
>LTR7up1_chr5_18668843_18674598_3428_ZNF534_k4me3_enh_KLF4_MED1_NANOG_44108_SMAD11_TCF4_FOXA1_7up_wanghigh_C_7up_phylo___chr5_1867415318674598___1445
TGTCAGGCCTCTGAGCCCAGG-----------------------CCAAGCCATCACATCC
CCTGTGAC---------------------------------------------TTGCACA
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAATGTAAATGGCTGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATC---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTAG--------------
----CTCATCCTGGCTCAAA-AAGCACCTCCAA---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCCACCAGAGAACAA--C
CCCCTT----TGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AATG-
GCCCCACCC-C-T-ATCGCCCTTCCCTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC
AGGTGA-----AA--CAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATG----------
>LTR7up1_chr6_131295357_131301196_3448_ZNF534_k4me3_weakenh_KLF4_MED1_NANOG_44108_TCF4_FOXA1_7up_GRO1of7_7up_phylo____chr6_131295357131295806____1449
-GTCAGGCCTCTGAGCCCAAG-----------------------CCCAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACA
TATATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CGCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAACGGCCGGTCCT-------------------
------------TG------------------TC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCGAG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGGG--------------
---------------------------AC-CCCCGCCCC-TGCCCACCAGAGAACAA--C
CCCCTTTGACTGTAATTTTCCTTTACCTTCCCA-AATCCTATAA-----------AACG-
GCCGCACCC-C-T-ATCTCCCTTGGCTGACTCTCATTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACACGCATGA---------
>LTR7up1_chr18_32281776_32282214_SOLO_KLF4_NANOG_7up_7up_phylo____chr18_3228177632282214____1438
-GTCAGCCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACCGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTAG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGGACAA--C
CCCCTT-----------TTCCATTACCTTCCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGTGCATGA---------
>LTR7up1_chr6_94553919_94559610_3524_ZNF534_k4me3_weakenh_KLF4_NANOG_FOXA1_7up_wanghigh_GRO4of7_C_7up_phylo___chr6_9455916194559610___1449
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACC
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGACTCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCTAGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACCCC-TGCCCACCAGAGAATAA--C
CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTTACACAAAGCCTG--TTT--GGTGGTCT
CCTCACACGGACACGCATG----------
>LTR7up1_chr14_5089316250896882_3066_ZNF534_KAP1_k4me3_weakenh_KLF4_NANOG_7up_chimeric_GRO2of7__chr14_5089316250893610____1448
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCAGG
TATCTGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTATAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ACT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAGA--AGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACCCC-TGCCCACCAGAGAACAA--C
CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACA-
GCCCCACCC-C-T-ATCTCCCTTGGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATGA---------
>LTR7up1_chr3_78581212_78588919_4876_ZNF534_KAP1_EncodeTxn_KLF4_NANOG_7up_GRO4of7_C_7up_phylo___chr3_7858847278588919___1446
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC
CCTGTGAC---------------------------------------------TTGCATG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAG---TGTAAATGGCCTGTCCT-------------------
------------TG------------------CT----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAACACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACCCC-TGCCCACCAGAGAACAA--C
CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTCTGCTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGTGCATG----------
>LTR7up1_chr19_52789774_52790222_h3k27ac_EncodeTxn_SOLO_KLF4_NANOG_7up_C_7up_phylo___chr19_5278977452790222___1448
TGTCAGGCCTCTGAGCCCAGG-----------------------CCAGGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTAAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TACCCACCAGGGAACAA-AC
CCCCTTTGACTGTAGTTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCACTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCAAACAAAGGCTG--TTT--GGTGGTCT
CTTCACACGAATGCTCA------------
>LTR7up1_chrY_4355393_4361230_3241_KAP1_NANOG_7up_GRO5of7_GRO6of7_GRO7of7_C_7up_phylo___chrY_43607834361230___1447
--TCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTCAC---------------------------------------------TTGCACG
TATACACCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATACGCCCTGC-CCT-CCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGCAAACGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCA--------------
---------------------------AC-CCCCACTCC-TGCCCTCCAGAGAACAA-CC
CCCCTTTGACTATAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACA-
GCCCCACCC-C-T-AACTCCCTTCGCTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCACGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGATGCGCATG----------
>LTR7up1_chrX_90773313_90779155_3356_ZNF534_KAP1_EncodeRepressed_FOXP1_KLF4_NANOG_7up_C_7up_phylo___chrX_9077870790779155___1448
--TCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTCAC---------------------------------------------TTGCACG
TATACACCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATACACCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGCAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCTTCAGAGAACAA-CC
CCCCTTTGACTATAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACA-
GCCCCACCC-C-T-ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGATGCGCATG----------
>LTR7up1_chr4_155108278_155114237_4974_ZNF534_ZNF90_KAP1_EncodeTxn_NANOG_7up_GRO4of7_C_7up_phylo___chr4_155113787155114237___1450
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCACCT
CCTGTGAC---------------------------------------------GTGCACA
TATACGCCCACA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAAAATCACAAAAGA
AGTGA-----ATATGCCCTGA-CCCGCCTTAACTGAT-----------------------
---GACATCCCACCACAAAAGAAGTGAAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AACCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACA-
GCCCCACCC-C-T-ATCTCCCTTCACTGAATCTCTTTTCAGACTCAGCCTGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGCGCATG----------
>LTR7up1_chr4_159425389_159425839_h3k27ac_weakenh_SOLO_NANOG_7up_C_7up_phylo___chr4_159425389159425839___1450
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTTCATG
TATATGTCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAATGACCTGC-CCCGCCTTAACTGAT-----------------------
---AACATTCCACCGCAAAAGAAGTGAAAATGGCCATTCCT-------------------
------------TG------------------CT----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCA--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCTA-AATCTTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTCAGACTCAGCCTGCCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTAGTCT
CTTCACACGGACGTACATG----------
>LTR7up1_chr15_101072487101078293_4824_ZNF534_ZNF90_KAP1_k27ac_EncodeTxn_wanghigh_GRO2of7__chr15_101072487101072924____1437
--TCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATATGCCTAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAAAGGCCGGTCCT-------------------
------------TG------------------AC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--ATGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACGTTGCC--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC
CCCCTT----------TTTCCTTTACCTACCCA-AATCTTATAA-----------AACG-
GCCTCACGC-C-T-ATCTCCCTTCACTGACTCCCTTTTCGGACTCAGCCCACCTGCGCCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGTGCAT-----------
>LTR7up1_chr6_157700642_157706582_3234_ZNF534_ZNF90_KAP1_EncodeTxn_NANOG_GRO4of7_C_7up_phylo___chr6_157706086157706582___1435
TATCAGGCCTCTGAGCCTGAG-----------------------CCAAGCCATCGCATCC
TCTCTGAC---------------------------------------------TTGCACA
TATATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAGAAGA
AGTGA-----AAATGCCCTGC-TCCGCCTTAACTGAC-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCT----------------
-------ATCCTGGCTCAAA-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCGTGCCAGAGAACAA-AC
CCCCTT----------TTTCCTTTACCTACCCA-AATCTTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCC
CTTCACATGGACGCGCATG----------
>LTR7up1_chr11_2339319_2339771_weakenh_SOLO_NANOG_7up_phylo____chr11_23393192339771____1449
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTACCTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATCCCTTCTCCTGG--------------
----CTCATCCTGGCTCAAA-AATCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACT-C-TGCTCGCCAGAGAACAA-CT
CCACTTTGACTGTAATTTTCCTTTATCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTCGCTGACTGTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCGCGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCGTGA---------
>LTR7up1_chr4_181949982_181950417_h3k27ac_enh_SOLO_KLF4_NANOG_44108_SMAD11_SOX2_TCF4_7up_7up_phylo____chr4_181949982181950417____1435
---CAGGTCTCTGAGCCTAAG-----------------------CCAAGCCATCACATCG
CCTGTGAC---------------------------------------------TTGCACG
TATATACGCAGA------------------------------------------------
-----------------------------TGGCCTG---------AAGAATCACAAAAGA
AGTTA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCTGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGCCCTTTTCCTGG--------------
----CTCATGCTGGCTCAAA-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTACG--------------
---------------------------AC-CCCCACT-C-TGCCCACCAGAG---AA-CT
CCCCTTTGACTGTAATTTTCCTTTATCTACCCA-AATCCTACAA-----------AATG-
GCCCCACCC-T-T-ATCTTCCTTCGCTGAGTCCCTTTTCGGACTCAGCCCGCCTGCGCCC
AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACAGGGACGCGCATGA---------
>LTR7up1_chr11_6657359766576956_4119_ZNF534_ZNF90_KAP1_EncodeTxn_NANOG_OCT4_7up_GRO2of7__chr11_6657359766574046____1449
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC
CCTGTGAT---------------------------------------------TTGCACG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAATAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCAGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CATCTTGCA--------------
---------------------------AC-CCCCACT-C-TGCCCGCCAGAGAACAA-CT
CCCCTTTGACTGTAATTTTCCTTTATCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTCTCTGACTCTCTTTTCAGACTCAGCCCGCGTGCACCC
AGGTGA-----AG--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGCGCATGA---------
>LTR7u1_chr13_36324687_36325130_h3k27ac_weakenh_SOLO_NANOG_C_7up_phylo___chr13_3632468736325130___1442
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC
GCGGTGAC---------------------------------------------TTG-ACG
TATATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAATGCCCTCC-TCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCTGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACT-C-TGCCTGCCAGAGAACAA-AT
CCCCTTTGACTGTAATTTTCCTTTATCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGTCTCAGCCCGCTTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGCACG----------------
>LTR7u1_chrX_1081978_1082419_EncodeRepressed_SOLO_NANOG_7up_phylo____chrX_10819781082419____1441
-GTGAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATATGCCCAGG------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAACGTCCTGC-CCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCGGTCCT-------------------
---------------------------------------------TAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAATCCTTTTCCTGG--------------
----CCCATCCTGGCTCAGA-AAGTTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCA--------------
---------------------------AC-CTCCACT-CCTGCCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTATCTACCCA-AATCCTATAA-----------AAGA-
GCCCCACCC-T-T-ATCTCCCTCCCCTGACTCTGTTTTCGGACTCAGCCCGCCTGCACGC
AGGTGA---------TTAAAAGTTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
C--CACACGGACGTACATGA---------
>LTR7u1_chrY_1081978_1082419_SOLO_7up_phylo____chrY_10819781082419____1441
-GTGAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATATGCCCAGG------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAACGTCCTGC-CCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCGGTCCT-------------------
---------------------------------------------TAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAATCCTTTTCCTGG--------------
----CCCATCCTGGCTCAGA-AAGTTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCA--------------
---------------------------AC-CTCCACT-CCTGCCCGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTATCTACCCA-AATCCTATAA-----------AAGA-
GCCCCACCC-T-T-ATCTCCCTCCCCTGACTCTGTTTTCGGACTCAGCCCGCCTGCACGC
AGGTGA---------TTAAAAGTTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
C--CACACGGACGTACATGA---------
>LTR7u1_chrY_15799724_15800172_SOLO_NANOG_C_7up_phylo___chrY_1579972415800172___1447
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCATG
TATATGCCCAGG------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAATGCCCTGC-CCTGCCTTAACGGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCGGTCCT-------------------
------------TG------------------TC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTG-AAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AATCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTACG--------------
---------------------------AT-CCTCACT-CCTGTCTGCCAGAGAATAA-AT
CCCCTTTGACTGTAATTTTCCTTTATCTACCAA-AATCCTATAA-----------AACA-
GCCCCACCC-T-T-ATCTCCCTTCACGGACTCTCTTTTTGGACTGAGCCTGCCTGCACCC
AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACACAAATG----------
>LTR7u1_chr4_134914245_134914710_EncodeTxn_SOLO_NANOG_7up_phylo____chr4_134914245134914710____1434
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCATG
TATATGCCCAGG------------------------------------------------
-----------------------------TGGCCGGAAGTAACTGAAAAATCACAAAAGA
AGTGA-----AAATGCCCTGC-CCCGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAATATGGCCGGTCCT-------------------
------------TG------------------TC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--ATGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AA-CTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTAGCC--------------
---------------------------AC-CCCCACC-CCTGCCCACCAGAGAACAA-AT
CCCCTTTGACTGTAATTTTCCTTTATCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATC---------------------------------GCCTGCACCC
AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGTACATGA---------
>LTR7u1_chr1_237541577_237542025_h3k27ac_EncodeRepressed_SOLO_NANOG_C_7up_phylo___chr1_237541577237542025___1448
TGTGAGGCCTCTGAGCCTAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------ATGCACC
TATATGCCCAGG------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAATGCCCTGC-CCCGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCGGTCCT-------------------
------------TG------------------TC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAA----CACCTTGTG--------------
---------------------------AC-CCCCACT-CCTGCCCACCAGAGAACAA-AT
CCCCTTTGACTGTAATTTTCCTTTATCTACCCA-AATCCTATAA-----------AATG-
GCACCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA---------TTAAAAGCTTTAATGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATG----------
>LTR7u1_chr9_12440912_12441412_h3k27ac_EncodeTxn_SOLO_NANOG_44108_SOX2_C_7up_phylo___chr9_1244091212441412___1468
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCAGTGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACGCCCAGG------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GATATTCCACCACAAAAGAAGTGAAAATGGCCGGTCCT-------------------
------------TG------------------TC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACT-CCTGCCCGCCAGAGAACAA-AT
CCCTTTTGACCATAATTTTCCTTTATCTACCCA-AATCCTATAA-----------AACA-
GTCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCCGCACCC
AGGTGA---------TTAAAAGCTTTATTGCTCACACACAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCGTG----------
>LTR7u1_chr5_116945628_116946177_h3k27ac_weakenh_SOLO_KLF4_NANOG_44108_SOX2_C_7up_phylo___chr5_116945628116946177___1447
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCGGTGAC---------------------------------------------TTGCACG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACT-AAGAATCACAAAAGA
AGTGA-----AAATGCCCTGC-CCCGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCGTGGCTCAAA-AATCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACT-CTTGCCCGCCAGCGAACAA-AT
CCCCTTTGACTGTAATTTTCCTTTATCTACCCA-AATCCTGTAA-----------AACA-
GCCCCACCC-T-T-ATCTCCCTTCGTTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC
AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGCACATG----------
>LTR7u1_chr6_130711844_130712292_weakenh_SOLO_NANOG_7up_phylo____chr6_130711844130712292____1448
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC
CCGGTGAC---------------------------------------------TTGCACA
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAACGGCTGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCGTTCTGGCTCAAA-AATCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------GAG----CATCTTGCG--------------
---------------------------AC-CCTCACT-CCTGCCCGCCAGAGAACAA-AT
CCCCTTTGACTGTAATTTTCTTTTATCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGTACCC
AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGATGCCCATGA---------
>LTR7u1_chr11_122546527_122555602_5651_ZNF534_ZNF90_KAP1_EncodeRepressed_GRO3of7_7up_phylo____chr11_122546527122547025____1467
-GTCAGGCCTCTTAGCCCAAG-----------------------CCAAGCCATTGTATCA
CCTGTGAC---------------------------------------------TTGCATG
TATATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAATGCCCTGC-CCCGCCTTAACTGAT-----------------------
---GACATTGCACCACAAAAGAAGTGAAAATGTCCAGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCATGG--------------
----CTCATCCTGGCTCA-A-AAACTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCA--------------
---------------------------AC-CCCCACT-CCTGCCCACCAAAGAACAA-AT
CCCCTTTGACTGTAATTTTCCTTTATCTACCCA-AATCCTATAA-----------AATG-
GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC
AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CCTCACACAGACACGCATGA---------
>LTR7u1_chr1_203005442_203005876_h3k27ac_TSS_SOLO_NANOG_C_7up_phylo___chr1_203005442203005876___1434
TATCAGGCCTCTGAGCCCAAG-----------------------CCACGCCACCGCATCC
CTGGTGAC---------------------------------------------TTGCACG
TGTACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAG-
--TGA-----AAATGCCCTGC-CCCGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTG----------------------------------
--------------------------------------------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCA---------A-A-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACT-CCTGCCCACCAGAGAACAA-AT
CCCCTTTGACTGCAATTTTCCTTTATCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTCACTGACTCTCTTTTCCGACTCAGCCCGCCTGCACCC
AGGTGA---------TTAAGAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACGCGCATG----------
>LTR7u1_chr3_71925473_71925971_h3k27ac_weakenh_SOLO_KLF4_NANOG_44108_SOX2_7up_phylo____chr3_7192547371925971____1466
-GTCAGGCCTCTGTGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCATG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCA-A-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACT--CTGCCCGCCAGAGAACAA-CT
CCCCTTTGACTGTCATTTTCCTTTATCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCCCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACGCGCATGA---------
>LTR7u1_chr15_93278373_93278821_EncodeRepressed_SOLO_NANOG_C_7up_phylo___chr15_9327837393278821___1448
TGTCAGGCCTCTGAGCCCAAG-----------------------TCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAGAAGA
AGTGA-----AAATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGACGTGAAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCGGGCTCAAA-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGAG--------------
---------------------------AC-CCCCACT-CCTGCCCACCTGAGAACAA-AT
CCCCTTTGACTGTAATTTTCCTTTATCTCCCCA-AATCCTATAA-----------AACC-
GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTGTTTTTGGACTCAGCCCGCCTGCAGCC
AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACTCCGACGCGCATG----------
>LTR7u1_chr10_21751374_21751765_h3k27ac_enh_SOLO_NANOG_44108_SMAD11_C_7up_phylo___chr10_2175137421751765___1389
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
TCTGTGAC---------------------------------------------TTGGACG
TATACGCCCAGG------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAATGCCCTGC-CCAGCCTTAACTGAT-----------------------
---GACATTATCT-----------T-----------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
---------------------------GTGAAAGTCCTTTTCCTGG--------------
----TTCATCCTGGCTCAAA-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCA--------------
---------------------------AC-CCCCACT-CCAGCCCGCCAGAGAACAA--T
CCCCTTTGACTGTAATTTTCCTTTACCTACCTA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTT------ATCTCCCTTCGGACTCAGCCCGCCTGCACCC
AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--AGTGGGCT
CTTCACACGGACGCGCAT-----------
>LTR7u1_chr3_100263006_100263453_h3k4me3_weakenh_SOLO_KLF4_NANOG_C_7up_phylo___chr3_100263006100263453___1437
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCGCCTTAACTGAT-----------------------
---GACATTCTACCAGAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------T--------------C
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGGG--------------
---------------------------AC-ACCCACT-CT-GCCCGCCAGAGAACAA-CT
CCCCTTCGACTGTAATTTTCCTTTATCTACCCA-AATCCTATAA-----------AACG-
GCCCCGCCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGTCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATG----------
>LTR7u1_chr3_46244372_46244820_EncodeTxn_SOLO_NANOG_C_7up_phylo___chr3_4624437246244820___1446
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC
CCTGTGAC---------------------------------------------TTGCACA
TATATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAATGCCCTGC-CCCGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCTGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACT-CCTGCCCGCCAGAGAACAA-GT
CCCCTTTGACTGTAATTTTCCTTTATCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCT--TTTCGGACTCAGCCTGCCTGCACCC
AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATG----------
>LTR7u1_chr3_16744186_16750064_4545_ZNF534_KAP1_EncodeTxn_NANOG_TCF4_GRO4of7_7up_phylo____chr3_1674418616744680____1443
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACA
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GATATTCCACCACAAAAGAAGTGAAAATGGCTGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTAAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-A-GCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACTTTGTG--------------
---------------------------AC-CCCCACT--CTGCCCACCAGAGAACAA--C
CCCCTTTGACTGTAATTTTCCTTTATTTACCCA-AATCCTATAA-----------AACG-
GCCCCATCC-T-T-ATCTCCCTTCGCTGACTTT--TTTCAGACTCAGCCTGCCTGCACCC
AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTTACACGGACGCGCATGA---------
>LTR7u1_chr7_125258828_125259326_h3k4me3_weakenh_SOLO_NANOG_7up_phylo____chr7_125258828125259326____1467
-GTCAGGCCTCTGAGCCTAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCATAAAAGA
AGTAA-----AAATGCCCTGC-CCCGCCTTAACTGAT-----------------------
---GACATTCCACTACAAAAGAAGTGTAAATGTCCGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTTCTTTTCCTGG--------------
----CCCATCCTGGCTTCAA-A-TCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCA--------------
---------------------------AT-GCCCACT-CCTGCCCGGCAGAGAACAA-CC
CCCCTTTGACTGTAACTTTCCTTTATCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC
AGGTGA---------TTAAAAGCTTTATCGCTCACACAAAGTCTG--TTT--AGTAGTCT
CTTCACACCGACAGGCATGA---------
>LTR7u1_chr3_46557050_46557496_h3k27ac_weakenh_SOLO_NANOG_7up_phylo____chr3_4655705046557496____1445
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGAATCC
CCTGTGAC---------------------------------------------TTGCACG
TATATGCCAAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAATGCCCTGC-CCCGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGGAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-A-ACTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACT-CCTGCCTGCCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG-
GCCTCATCC-C-T-ATCTCCCTTCGCTGA--CTGTTTTCGGACTCAGCCTGCCTACACCC
AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGATGCGCATGA---------
>LTR7u1_chr5_116867434_116868086_h3k27ac_enh_SOLO_NANOG_SMAD11_C_proto7y___chr5_116867434116868086___1446
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCA
CCGGTGAC---------------------------------------------TTGCACG
AATATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAATGCCCTGC-CCCGCCTTAACTGAT-----------------------
---GACATTCCACTACAAAAGAAGTG-AAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATA---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-A-GCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACT-CCTGCCCACCAGAGAACAA-CC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AATG-
GCCCCACCT-C-T-ATCTCCCTTCGCTGAATCTCTTTTCGGACTCAGTCCACCTGCACCC
AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACTGATGCGCATG----------
>LTR7u1_chr13_56109982_56110429_h3k27ac_EncodeTxn_SOLO_NANOG_7up_phylo____chr13_5610998256110429____1446
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACC
TATATGCCTAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAATTCCCTGC-CCCGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GGGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-A-GCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCA--------------
---------------------------AC-CCCCACT-CCTGCCCACCAGAGAACAA-AC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AATG-
GCCCCACCC-C---ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC
AGGTGA---------TTAAATGCTTTATTGCTCACACAAAGCCTG--TTT--GGTAGTCT
CTTCACACGGACGCGAGTGA---------
>LTR7u1_chr6_87861862_87862361_EncodeRepressed_SOLO_NANOG_C_7up_phylo___chr6_8786186287862361___1447
TGTCAGGCCTCTGAGCCCAAA-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAATGCCCTGC-CCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCTTCCTGGCTCAAA-A-GCTCCCTCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCA--------------
---------------------------AC-CCCCACT-CCTGCCCACCAGAGAACAA-AG
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
TGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTAGTCT
CTTCACACGGACGCGCATG----------
>LTR7u1_chr9_31326307_31334697_4429_ZNF534_KAP1_k27ac_EncodeTxn_wangmod_GRO3of7_7up_phylo____chr9_3132630731326754____1447
-GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC
CCTGTGAC---------------------------------------------TTGCACA
TATACACCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACCGAAGAATCACAAAAGA
AGTGA-----AAATGCCCTGC-CCCGCCTTAACTGAT-----------------------
---GACATTACACCACAAAAGAAGTGAAAATGGCTGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCACAAA-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCT--------------
---------------------------AT-CCCCACT-CCTGCCCGCCAGAGAACAA-AT
CCCCTTTGACTGTAATTTTCCTTTATCTACCCA-AATCCTATAA-----------AACG-
GCTCCACCC-T-T-ATCTCCCTTCCCTGACTCTCTTTTCAGATTCAGCCCGCCTGCACCC
AGGTGA---------TTAAAA-CTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGAACGCGCATGA---------
>LTR7u1_chr18_42552441_42558142_2717_1_EncodeTxn_NANOG_GRO4of7_C_7up_phylo___chr18_4255769342558142___1448
TGTCAGGCCTCTGAGCCCAAG-----------------------TCAAGCCATCACATCC
CCTGTGAC---------------------------------------------TTGCACG
TATATACCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAATGCCCTGC-CCCGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCTGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTCCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCA--------------
---------------------------AC-CCCCACT-CCTACCCACCCGAGAACAA-AT
CCCCTTTGACTGTAATTTTCCTTTATCTACCCA-AATCCTATAA-----------AACA-
TCCCCACTC-T-T-ATCTCCCTTCACTGACTCTCTTTTCAGACTCAGCCCACCTGCACCC
AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGATGCAAGTG----------
>LTR7u1_chrX_89191522_89191969_EncodeTxn_SOLO_NANOG_7up_phylo____chrX_8919152289191969____1447
-GGCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACT
TATAAGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAA-TGAAGAATCACAAAAGA
AGTGA-----AAATGCCCTGC-CCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCAGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCGTGGCTCAGA-AAGCTCCCCAAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGGG--------------
---------------------------AC-CTCCACT-CCTGCCCGCCAGAGAACAA-AT
CCCCTTTGACTGTAATTTTCCTTTATCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTCCCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA---------TTAAAAGCTTTATTGCTCATACAAAGCCTG--TTT--GGTGGTCT
CTCCACACAGACACGAGTGA---------
>LTR7u1_chr8_108309757_108310205_h3k27ac_weakenh_SOLO_KLF4_NANOG_C_7up_phylo___chr8_108309757108310205___1448
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAATGCCCTGC-CCCGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----CGGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCCGGCTCAAA-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTTCG--------------
---------------------------AC-CCCCACT-CCTGCCCGCCAGAGAACAA-AT
CCCCTTTGACTGTAATTTTCCTTTATCTACCCA-AATCCTATAA-----------TACG-
GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTTGGACTCAGCCTGCCTGCACCC
AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACAGGGACTCGAGTG----------
>LTR7u1_chr3_68418143_68418647_SOLO_NANOG_C_7up_phylo___chr3_6841814368418647___1467
TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC
CCTGTGAC---------------------------------------------TTGCACG
TACACACCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----ATATGCCCTGC-TCCGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGACGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACT-C-TGCCCACCAGAGAACAA-CT
CCCCTTTGACTGTAATTTTCCTTTTTCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTTGCTGACTATCTTTTGGGACTCGGCCCACCTGCACCC
AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTAT
CTTCACACGGATGCGCATG----------
>LTR7u1_chr11_121637351_121643560_3134_ZNF534_k4me3_weakenh_KLF4_NANOG_GRO1of7_C_proto7y___chr11_121643110121643560___1450
TGTCAGGCCTCCGAGCTCAAG-----------------------CTAAGCCATCGCATCC
CCAATGAC---------------------------------------------TTGCACA
TATACACCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAATGCCCTGC-CCCGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCAGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTAAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCC--------------
---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAA-CC
CCCCTTTGACTGTAATTTTCCTTTATCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTCACTGACTCTCTTTTTGCACTCAGCCCAACTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACGTGAGTG----------
>LTR7u1_chr12_106141882_106142344_weakenh_SOLO_NANOG_C_7up_phylo___chr12_106141882106142344___1448
TGTCAGGCCTCTGTGCCCAAG-----------------------CCAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCAGAAAAGA
AGTGA-----AAATGCCCTGC-CCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCGGCCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTCACG--------------
---------------------------AC-CCCCACCCC-TGCCCGCCAGAGAACAA-CC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC
AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACGCACATG----------
>LTR7u1_chrY_15510075_15510519_SOLO_NANOG_SMAD11_TCF4_C_7up_phylo___chrY_1551007515510519___1444
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAT---------------------------------------------TTGCATG
TATATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAATACCCTCC-CCAAGCTTAACGGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAACATGGCCGGTTCT-------------------
------------TG------------------TC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--ATGAAAGTCATTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AATCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCCCCAGAGAACAA---
CCCCTTTGACTGTAATTTTTCTTTACCTACCCA-AATCCAATAA-----------AACT-
GCCCTACCC-C-T-ATCTCCCATCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA---------TTAAAA--TTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACACACATG----------
>LTR7u1_chr18_51470189_51470638_EncodeTxn_SOLO_NANOG_C_7up_phylo___chr18_5147018951470638___1444
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCGCATCC
CCTGTGAC---------------------------------------------TTGCACG
TATATGACCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTAA-----AAATACCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCGGTCCT-------------------
------------TG------------------TC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAA----CACCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA---
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACT-
GCCCCACCC-C---ATCTCCCTTCGCTGACTCTCTTTTCAGACTCAGCCCACCTGCCCCC
AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
-TTCACACGTATGCACATG----------
>LTR7u1_chr21_17121441_17127757_4390_ZNF534_ZNF90_KAP1_EncodeRepressed_NANOG_7up_phylo____chr21_1712144117121891____1448
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCGCATCC
CAGGTGAC---------------------------------------------TTGCATA
TATATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GATATGCCACCACAAAAGAAGTGAAAATGGCTGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTAAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTCCA--------------
---------------------------AC-CCCCACTCC-TGCCCATCAGAGAACAA-CC
CCCTGTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AATG-
GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTTGGACTCAGCCTGCCTGCACCC
AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGCACATGA---------
>LTR7u1_chr13_80183511_80189979_2780_ZNF534_ZNF90_KAP1_k27ac_EncodeTxn_NANOG_7up_phylo____chr13_8018351180183959____1448
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCTCATCC
CTGGGGAC---------------------------------------------TTGCACA
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAATGCCCTGC-CCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTAAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCTCTCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CATCTTGCG--------------
---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAA-CC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACA-
GCCCCACTC-C-T-ATCTCCCTTCACTGACTCTCTTTTCAGACTCAGCCTGCCTGCACTC
AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTAACACGGACGCACGTGA---------
>LTR7u1_chr5_77491011_77491450_h3k4me3_TSS_SOLO_7up_phylo____chr5_7749101177491450____1438
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCGCATCC
CCGGTGAC---------------------------------------------TTGCACA
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAATAACTGAAGAATCACAAAAGA
AGTGA-----AAATGCCCTGC-CCCGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAG---TGAAAATGGCCGGTCCT-------------------
------------CG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTAAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCTCCC---C---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTG----------------
------------------------------CCCCACTCC-TGCCCGCCAGAGAACAA-CT
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATGA---------
>LTR7u1_chrX_109178345_109184158_4538_ZNF534_KAP1_EncodeTxn_7up_phylo____chrX_109178345109178792____1447
-GTCAGGTCTCTGAGCCCAAG-----------------------CTAAGCCATCACATCC
CCTGTGAC---------------------------------------------TAGCACA
TATACGCTCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAA-AGA
AGTGA-----AAATGCCCTGC-CCCACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTAAGAGTCCTTTTCCTGG--------------
----CTCATCCTAGCTCAAA-AATCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCCTGCG--------------
---------------------------AC-CCCCACTCC-TACCCGCCAAAGAACAA-CC
CCCCTTTGACTGTAATTGTCCTTTACCTACCCA-AATCCTATAA-----------AACA-
GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATGA---------
>LTR7u1_chr1_229412418229418665_3302_ZNF534_GRO2of7__chr1_229412418229412815____1394
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCGCAGCC
CCGGTGAC---------------------------------------------TTGCACA
TATATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAATG---------------------------------------------
--------------------------------GCCGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTAAAAGTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTATG--------------
---------------------------AC-CCCCACTCC-TGCCAGCCAGAGAACAA-CC
CCCCTTTGACTGTAATTTTCCTTTACCTGCCCA-AATCCTATAA-----------AACT-
GCCCCACCC-T-T-AACTCCCTTCG----CTTTCTTTTCGGACTCAGCCCACCTGCACTC
AGGTGA---------TAAACAGCTTTATTGCTCACACAAAACCTG--TTT--GGTGGTCT
CTTCACATGGACGCGCATGA---------
>LTR7d1_chr7_120009179_120014835_2887_1_EncodeTxn_7int____chr7_120009179120009629____1449
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCGCATCC
CCTGTGAC---------------------------------------------CTGCATG
TATACACCCAAT------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCATGAAAGA
ATTGA-----AAATGGCCTGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTAAAATTCCTTTTCCTGG--------------
----CTCATCCTGGCTGAAA-AACCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCCTGTG--------------
---------------------------AC-CGCCACCCC-TGCCAGCCAGAGAACAA---
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AATG-
GCCCCACCC-C-T-ATCTCCCTGTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGATGTGCATGA---------
>LTR7d1_chr20_172772178853_2990_1_EncodeTxn_GRO2of7__chr20_172772173223____1451
-GTCAGGCCTCTGAGCCGAAG-----------------------CTAAGCCATCACATCC
CTTGTGAC---------------------------------------------CTGCACC
TATACGCCTACA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAATGGCCTGTTCTTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCTGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATCCCTTTTCCTGG--------------
----CTCATCTTGGCTCAAA-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAA-CT
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG-
GCCCCACCT-C-T-ATCTCCCTTCACTGACTCTGTTTTCGGACTCAGCCTGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGAGTGA---------
>LTR7d1_chr2_184198784_184199229_h3k27ac_EncodeTxn_SOLO_7int____chr2_184198784184199229____1444
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATTGCATCC
CCTGTGAC---------------------------------------------CTGAACA
TATAGGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAATGGCCTGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAGTTCCTTCTCCTGG--------------
----CTCATCCT-GCTCAAA-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-TCCCACTCC-TGCCCGCCAGAGAACAA-CT
CCCCTTTGACTGTAATTTTCCTTTACCTAACCA-AATCTTATAA-----------AATG-
GTCCCACCT-C-T-ATCTCCCTTCGCTGACTCT--TTTCGGACTCAGCCCGCCTGCCCCT
AGGTGA-----AA--TAAATAGCCTTGTTGCT----CAAAGTCTG--TTT--GGTGGTCT
CTTCACACGGACGCGAGTGA---------
>LTR7d1_chr10_27465310_27470937_3794_1_k4me3_weakenh_7int____chr10_2746531027465760____1450
-GTCAGTCCTCTGAGCCTAAG-----------------------CTAAGCCATAGCATCT
CCTGTGAC---------------------------------------------CTGCACT
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAATGGCCTGTTCCTGCCTTAACTGAT-----------------------
---AACATTCCACCACAAAAGAAGTGAAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTAAAATTCCTTTTCCTGT--------------
----CTCATCCTGGCTCAAA-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCTACCCC-TGCCAGCCAGAGAACAA-C-
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACA-
GCCCCACCC-C-T-ATCTCCCGTCATTGACTCTCTTTTCTGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGTGCATGA---------
>LTR7d1_chr11_81769942_81770404_h3k27ac_EncodeTxn_SOLO_7old____chr11_8176994281770404____1449
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATTGCATC-
CCTGTGAC---------------------------------------------CTGCACC
TATACGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAATGGCCCGTTCCTGCCTTAACTGAT-----------------------
---GACGTTCCACCACAAAAGAAGCGAAAATGGCCAGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------AAC--------TT--GTGAAATTCCTTTTCCTGG--------------
----CTTATCTTGGCTCAAA-AATCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCACCAAAGAACAA-CC
CCCCTTTGACTGTAATTTTCCTTTACCTACCTA-AATCTTATAA-----------AACG-
ACCCCACCC-C-T-ATCTCCCTTAGCTGACTCTCTTTGTGGACTCAGCCTGCCTGCACCC
AGGTGA-----T---TAAAAAGATTTATTGCTCACCCAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGTGAGTGA---------
>LTR7d1_chr8_57390769_57391200_EncodeTxn_SOLO_7old____chr8_5739076957391200____1428
-GTCAGGCTTCTGAGCCCAGG-----------------------CTAAGCCATTGTATCA
CCTGTGAC---------------------------------------------ATGCACG
TATATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAATTGAAGAATC-CAAAAGA
AGTGA-----AAATGGCCTGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAAGGGCTGGTCCT-------------------
------------TG------------------CC----------TTAA----CCGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------TCC-TGCCCTCCAGAGAACAA-CC
CCCCTTTGACTCTAATTTTCCTTTACCTACACA-AATCTTATAA-----------AACA-
GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTCCGACTCAGCCCGCCTGCACCA
AGGTGA-----T---TAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGTGAGTGA---------
>LTR7d1_chr1_244350717_244351134_h3k27ac_weakenh_SOLO_7old____chr1_244350717244351134____1411
------------------------------------------------------------
---GTGAC---------------------------------------------CTGCACG
TATATATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAGAGGA
AGTGA-----AAATGGCCTGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACTACAAAAGAAGTGAAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----CCGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTCCTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------G---------GAG----CACCTTGTC--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-CC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG-
GCCTCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGACGGCCTGCACCC
AGCTGA-----T---TAAAAAGCTTTATCGCTCACACAAAGCCTG--TTT--GGTTGTCT
CTTCACACGAACGCGAGTGA---------
>LTR7d1_chr6_130795837_130796283_weakenh_SOLO_NANOG_C_7int___chr6_130795837130796283___1446
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCAGG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGATATTTAAATGGCCTGCTCCTGCCTTAACTGAT-----------------------
---CACATTCCACCACAAAAGAAGTGAAAGTGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAAA-AATCTCCCCCGT---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAA----CACCTTGTG--------------
---------------------------AC-CCCGACTCC-TGCCCGCCAGAGAACAA-CC
CCCCTTT----------TTCCTTTACCTACCCA-AATCTTATTA-----------AACG-
GCCCCACCC-C-T-ATCTTCCTTCACTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGCTGCTCACACAAAGCTTG--TTT--GGTGGTCT
CTTCACAGGGACGCGAGTG----------
>LTR7d1_chr20_23528306_23528753_h3k27ac_enh_SOLO_C_7int___chr20_2352830623528753___1447
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATGC
CCTGTGAC---------------------------------------------CTGCAGG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGATATTTAAATGGCCTGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCAGTCCT-------------------
------------TG------------------CC----------TTAA----CTGAA---
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-----------------------TT--GTGAAATTCCTTTTCCTGG--------------
----CTCACCCTAGCTCAAA-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCATTCC-TGCCTGCCAGAGAACAA-CA
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AATG-
GCCCCACCC-C-T-ATCTCCCTTTACTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGCCT
CTTCACACGGACGTGAGTG----------
>LTR7d1_chr1_54906872_54907325_h3k27ac_EncodeTxn_SOLO_chimeric_C_7int___chr1_5490687254907325___1451
TGTCAGGCCTCTGAGCCCAGG-----------------------CTAAGCCATCGCATCC
CCTGTGAC---------------------------------------------CTGCACG
TATATGCCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCAGAAAAGA
AATGA-----AAATGGCCTGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCATAAAAGAAGTGCAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ACT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CATCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-CC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCTCATAA-----------AATG-
GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC
AGGTGA-----AA--TAAACAGACTTGCTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGATGCGAGTG----------
>LTR7d1_chr21_42800847_42806578_2990_ZNF534_k4me3_weakenh_NANOG_C_7int___chr21_4280613242806578___1446
TGTCAGGCTTCTGAGCCCAAG-----------------------CTAAGCCATCATATAC
CCTGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGATATTTAAATTGCCTGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCAGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCTCCCCCAT---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAATAA-CC
CCCCTTC----------TTCCTTTACCTACCCA-AATCTTATAA-----------AATG-
GCCCCACCC-C-T-ATCTCCCTTGGCTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTCCTCATACAAAGCCTG--TTT--GGTGGACT
CTTCACACAGATGCGAGTG----------
>LTR7d1_chr11_63452639_63454201_1085_ZNF534_k27ac_EncodeRepressed_7int____chr11_6345263963453089____1450
-GTCAGGCCTCTGAGACTAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTACATG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGATATTTAAATGGCCTGTTCCTGCCTTAACTGAT-----------------------
---GACATTCAACTGCAAAAGAAGTGCAAATGGCCAGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------AGC--------TT--CTGAAATTCCTTCT---GG--------------
----CTCATCCTGGCTCAAA-AAGCTCCCTGAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGTCTGCCAGAGAA----CC
CCCCTTTGACTTTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACA-
GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCAGACTCAGCCTGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTCATTGTTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGAAGCGAGTGA---------
>LTR7d1_chr11_83430603_83436575_2643_1_EncodeTxn_C_7int___chr11_8343612083436575___1453
--TCAGGCCTCTAAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACC
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCAGAAGTAACTGAAGAATCACAAAAGG
AGTGAATTTTAAATGGCCTGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCAGTCCT-------------------
------------TG------------------CC----------TTAA----CTAATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--CTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCCTG-G--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACCC-CC
CTCCTTTGACTGTAATTTTCCTTTACATACCTA-AATCTTATAA-----------AACG-
GCCCGACCC-C-T-ATCTCCCTTCACTGAATCTCTTTTCAGACTCAGCCTGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGCGAGTG----------
>LTR7d1_chr1_21554968_21555417_EncodeTxn_SOLO_NANOG_C_7int___chr1_2155496821555417___1448
TGTCAGGCGTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACA
TATACATCCAGA------------------------------------------------
-----------------------------CGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGAAATTTAAATGGTCTGTTCCTACCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGACGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAA----CC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCC-TATCTTATAA-----------AACG-
GCCCCACCC-A-T-ATCTCCCTTGGCTGACTCTCTTTTTGGACTTAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACTCAAAGCCTG--TTT--GGTGGTCT
CTTCACTCGGATGC---------------
>LTR7d1_chr7_20120709_20126555_2964_ZNF534_k4me3_TSS_MED1_NANOG_44108_SMAD11_SOX2_wanghigh_GRO1of7_7int____chr7_2012070920121160____1445
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------TTGCATG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATAACAAAAGA
AGTGA-----AAATGGCCTGTTCCTGCCTTAACTAAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCGGTGCT-------------------
------------TG------------------CC----------TTAA----ATGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC--CACACTCC-TGCCCTCCAGAGAACAA-CC
CCCCTTTGCCTGTAATTTTCCTTTACCTACCGA-AATCTTACAA-----------AATG-
GCCCCACCC-C-T-GTCTCCCTTCGCTGACTCTCTTTGCGGACTCAGCCAGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--AATGGTCT
CTTCACACTGGCGCG--------------
>LTR7d1_chr4_174519435_174519881_h3k27ac_EncodeTxn_SOLO_7int____chr4_174519435174519881____1446
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATTATATCC
CCTGTGAC---------------------------------------------CTGCACA
TATACATCCACA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGT
AGTGATACTTAAATGGCCTGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCATCTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCTCCACCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTGC-TGCCCACCAGCGGGCAA-CC
CCCCTT----------TTTCCTTTACCTACCCA-AATCTTATAA-----------AATA-
GCCCCACCC-C-T-ATTTCCCTTTGCTGACTCTCTTTTCCGACTCAGCCAGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACGCGAGTGA---------
>LTR7d1_chr18_35844062_35850418_2579_ZNF534_KAP1_EncodeRepressed_GRO1of7_7int____chr18_3584406235844501____1439
--------CGCTGAGCCCAAG-----------------------CTAAGCTATCATATCC
CCTGTGAC---------------------------------------------CTGCACA
TATACATCCGGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGTAGAATCACAAAAGA
AGTGAAATTTAAATGGCCTGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTAAAAATGGCTGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCTCTCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCTCACCAGAGAACAA-CC
CCCCTTT----------TTCTTTTACCTACCGA-AATCTTATAA-----------AACG-
GCCCCACCC-T-T-GTCTCCCTTAGCTGACTCTCTTTTTGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGATCT
CTTCACAGGGACGCAAGTGA---------
>LTR7d1_chr3_162712460_162718258_2750_ZNF534_k4me3_EncodeTxn_GRO3of7_7int____chr3_162712460162712907____1445
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTAAAGTAACTGAAGAATCACAAAAGA
AGTGATATTTAAATGGCCTTTTCCTGCCTTCACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCTGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACT--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCTCTCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACGTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAA-CC
CCCCTTT----------TTCCTTTACCTACCCA-AATCTTATAA-----------AACA-
GCACCACCC-C-T-ATCTCCCTTCGCTGACTTTCTTTTCG-ACTCAGCCCATCTGCACCC
AGGTGA-----AA--TAAACAGACCTGTTACTCACACAAAGCCAG--TTT--CGTGGTCT
TTTGTGAGGGACGCGAGTGA---------
>LTR7d1_chr1_116860171_116860634_h3k27ac_EncodeRepressed_SOLO_C_7int___chr1_116860171116860634___1450
TGTCAGGCCTCTGAGCCTAAC-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACC
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGATATTTAAATGGCCTGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCTGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTC------------------
----CTCATCCTGGCTCAAA-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCAACTCC-TGCCCACCAGAGAACAA-GC
CCCTTTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG-
ACCCCACCT-C-T-ATCTCCCTTTGCTGACTC--TTTTCAGACTCATCCCTCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTA--TTT--GGTGGTCT
CTTCACATGGACACGAGTG----------
>LTR7d1_chr4_103941268103947029_2996_ZNF534_EncodeRepressed_GRO2of7__chr4_103941268103941716____1448
-GTCAGGCCTCTGAGTCCAAG-----------------------CTAAGCCATCTCATCC
CCTGTGAC---------------------------------------------CTGCACG
TATACATTCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGATATTTAAATGGTCTGTTCCTGCCTTAACTGAT-----------------------
---GACATTCTACCACAAAAGAAGTGAAAATGGCTGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCTTTCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-TCCTAGTCC-TGCCCACCAGAGAA-AA-AC
CCCCTTTGACTCTAATTTTCCTTTACCTACCCA-AATCCTGTAA-----------AATG-
GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTCAGACTCAGTCCGCCTGCCCCC
AAGTGA-----AA--TAAACAGCCTTGTTGCTCACAC-AAGCCTG--TTT--GGTGGTCT
CTTCCCAAGGACAC---------------
>LTR7d1_chr21_26081260_26081656_h3k27ac_enh_SOLO_NANOG_44108_SMAD11_SOX2_TCF4_C_7int___chr21_2608126026081656___1396
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAACC-----ATCC
CCTGTGAC---------------------------------------------CTGCACG
TATTCGCCCAGA------------------------------------------------
-----------------------------TGGCCCGAAGCAAGTGAAGAATCACAAAAGA
AGTGA-----AAATGGCCTGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTTCTGG--------------
----CTCATCCTGGCTC-AA-AAACTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCCTGTG--------------
---------------------------AC-CCCCACCCC-TGCCCCCCAGAGAACAA--C
CCCCTTTGACTGCAATTTTCCTTTACCTACCCG-AATCTTACAA-----------AATG-
GCCCTACCC-C---ATCTCCCTTTCCTGACTCT-TTTTCGGACTCAGCCTGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTT-------------------------------
-----------------------------
>LTR7bc_chr21_41244264_41244723_EncodeTxn_SOLO_C_7int___chr21_4124426441244723___1446
TGTCAGGCCTCTGAGCCCAAG-----------------------CTATGCCATTGTATCC
CCTGTGAC---------------------------------------------CTGCACC
TATACGTCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAAGTGAAGAATCACAAAAGA
AGTGA-----AAATGGCCGGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCAGTCCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTC---TGG--------------
----CTCATCCTGGCTC-AA-AGGCTCTCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACCCT-GGCCAGCCAGAGAACAA--C
CCCCTTTGATTGTAATTTTCCACTACCTACCCA-AATCTTATAA-----------AGTG-
GACCCACCC-C-T-GTCTCCCTTCACTGACTCTCTTTTCAGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAA-AACCTTGTTGCTCAAACAAAGCCTG--TTT--TGTGGTCT
CCTTACATGGACGCGCGTGA---------
>LTR7bc_chr2_106015415_106015866_h3k27ac_EncodeRepressed_SOLO_7int____chr2_106015415106015866____1448
-GTCAGGTCTCTGAGCCCAAG-----------------------TTAAGCCATTGTATCC
CCTAGGAC---------------------------------------------ATGCACA
TATACGTCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGCAAATGAAGAATCACAAAACA
AGTGA-----AAATGGCCTGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCCCAAAAGAAGTGAAAATGGCTGGTCCC-------------------
------------TG------------------CC----------TTAA----CTGATGAT
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTC-AA-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTA--------------
---------------------------AC-CCCCAACCC-TGCCCGCCAGGGAACAA--A
CCCCTTTGACTGTAATTTTCCTCTACCTACCCA-AATCTTATAA-----------GATG-
GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTCAGGCTCAGCCCACATGCACCC
AGGTGA-----AA--TAAA-AGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
TTTCACATGGATGCGTGTGA---------
>LTR7d1_chrX_121343896_121348628_2933_ZNF534_EncodeTxn_GRO5of7_GRO6of7_GRO7of7_C_7down___chrX_121348268121348628___1359
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCT
CCTGTGAC---------------------------------------------CAGGACG
TACACATCCAG-------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-----------------------------ATGGCCGGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAAA-A-GCTCCCCGAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAA-CC
CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCGCACGGACGTGAGTG----------
>LTR7d1_chrX_116332006_116336841_2410_1_k27ac_EncodeRepressed_GRO7of7_7down____chrX_116332006116332395____1387
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCC---ATATCC
TCTGTGAC---------------------------------------------CTGCACA
GATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGGAACTGAAG------------
------------------------------------------------------------
----------CATGATAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAAA-A-GCTACCCGAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACCCC-TGCCCGCT-GAGAGCAA-CC
CCC-TTTGACTGCAATTTTCCTTTACCTACCCA-AATCTTATAA-----------GACG-
GCCCCACCC-C-T-ATCGCCCTTTGCTGACTCTCTCTTCAGGCTCAGCCCACCTGCACCC
AAGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACG----------------
>LTR7d1_chr13_48594936_48595388_enh_SOLO_7int____chr13_4859493648595388____1451
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCACATCC
CCTGTGAC---------------------------------------------CTGCACG
TATATGCCCGGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGA-----AAATGGCCTGTTCCTGACTTAACTGAT-----------------------
---GACATTCCACCGCAAAAGAAATGAAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCTCCCTCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-CC
CTTCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG-
GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCAGACTCAGACCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTTCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGATGCGAGTGA---------
>LTR7d1_chr7_32832561_32838271_2846_ZNF534_KAP1_EncodeRepressed_GRO3of7_7int____chr7_3283256132833012____1450
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCACATCC
CCTGTGAC---------------------------------------------CTGCACT
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGATACTTAAATGGCCTGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-GGCCTGCCAGAGAACAA-CC
CCCCTTTGACTGTAATTTTCCTTTACCTACCAA-AATCTTAGAA-----------AATG-
GCCCCACCC---C-ATCTCCCTTTGCTGACTCTCTTTTCAGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGATGCG--------------
>LTR7d1_chr15_86986803_86987258_h3k27ac_EncodeRepressed_SOLO_NANOG_44108_C_7int___chr15_8698680386987258___1448
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACC
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGGGATATTTAAATGGTCTGTTCCTGCCTTCACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCTCCCCAAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCTGAGAACAA-CC
CCCCTTTGACTGTAATTTTCCTTTACCTACCTA-AATCCTATAA-----------AACG-
ACCCCACCC-A-T-ATCTCCTTTGGCTGACTCTCTTTTCAGACTCAGCCCGCCTGAACCC
AGGTGA-----AA--TAAACAGCCTTG---CTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGC---------------
>LTR7d1_chrX_116105682_116106136_EncodeRepressed_SOLO_NANOG_7int____chrX_116105682116106136____1454
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------TTGCATG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGATATTTAAATGGCCTGTTTCTGCCTTAACTGAT-----------------------
---GACATTCTACCACAAAAGAAGTGAAAATGGCCAGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAA-CC
CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCACTGACTCT--TTTCAGACTCAGCCCGCCTACACCC
AGGTGA-----AA--TAAACAGCCCTGTTGCTCACACAAAGCCTG--TTT--GGTGTTCT
CTTCACACAGACGTGAGTGA---------
>LTR7d1_chr11_4219299_4225317_1668_ZNF534_EncodeRepressed_GRO5of7_GRO6of7_GRO7of7_C_7int___chr11_42248724225317___1439
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCATG
TATACATCCAGA------------------------------------------------
-----------------------------GGGCCTGAAGCAACTGAAGAATCACAAAAGA
AGTGA-----AAATGGCCTGTTCCTGCCTTAACTGAG-----------------------
---GACATTCCACCACAAAAGAAAACAAAATGGCCTGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACT--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAAA-AA-CTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAA-CC
CCCTTTT-----------TCCTTTACCTACCCA-AATCTTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCGCTGACACTCTTTTCGGACTCAGCCTGCCTGCACCC
AGGTGA-----AA--TAACCAGCCTTGTTGCTCACGCAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGTGAATG----------
>LTR7d1_chr11_4315702_4321901_1692_ZNF534_EncodeRepressed_GRO5of7_GRO6of7_GRO7of7_C_7int___chr11_43214564321901___1439
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCATG
TATACATCCAGA------------------------------------------------
-----------------------------GGGCCTGAAGCAACTGAAGAATCACAAAAGA
AGTGA-----AAATGGCCTCTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAAACAAAATGGCCTGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACT--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAAA-AA-CTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAA-CC
CCCTTTT-----------TCCTTTACCTACCCA-AATCTTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTCGCTGACACTCTTTTCGGACTCAGCCTGCCTGCACCC
AGGTGA-----AA--TAACCAGCCTTGTTGCTCACGCAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACGTGAATG----------
>LTR7d1_chr11_4250610_4251055_EncodeRepressed_SOLO_7int____chr11_42506104251055____1439
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCATG
AATACATCCAGA------------------------------------------------
-----------------------------GGGCCTGAAGCAACTGAAGAATCACAAAAGA
AGTGA-----AAATGGCCTGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAAAGAAAATGGCCTGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACT--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAAA-AA-CTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CAACTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCACCAGAGAAGAA-CC
CCCTTTT-----------TCCTTTACCTACCCA-AATCTTATAA-----------AACG-
GCCAGACCC-C-T-ATCTCCCTTTGCTGACACTCTTTTCGGACTCAGCCTGCCTGCACCC
AGGTGA-----AA--TAACCAGCCTTGTTGCTCACGCAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGCGAGTGA---------
>LTR7d1_chr2_208907908_208908369_EncodeRepressed_SOLO_7int____chr2_208907908208908369____1456
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACA
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAATA
AGTGATATTTAAATGGCCTGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCAGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGC--------------
----CTCATCCTGGCTCAAA-AAGCTTCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTAC-TGCTCACCAGAGAACAA-CC
CCCCTTT-----------TCCTTTACCTACCCA-AATCTTATAA-----------AACG-
GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCTCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CCTCACATGGACACAAGTGA---------
>LTR7d1_chr12_29134620_29140801_2944_ZNF534_EncodeTxn_C_7int___chr12_2914036029140801___1441
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCAGAAAAGA
AGTAATATTTAAATGGCCTGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCTGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCCTAAA-AAGCTCCCTGAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACTTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAA-CC
CCCTTTT-----------TCCTTTACCTACCCA-AATCTTATAA-----------AACA-
GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTTGGACTCAGCCTGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGATGC---------------
>LTR7d1_chr17_65158898_65159347_EncodeTxn_SOLO_7int____chr17_6515889865159347____1447
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGGC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAATAACTGAAGAATCACAAAAGA
AGTGATATTTACATGGCCTGTTCCTGACTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCAGTCCT-------------------
------------TG------------------CC----------TTAA----CTGAGGGC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-CC
CCCTTTT-----------TCCTTTACCTACCCA-AATCTTATAA-----------AACA-
GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACGAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACACGAGTGA---------
>LTR7d1_chr5_23381160_23381619_EncodeTxn_SOLO_7int____chr5_2338116023381619____1455
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGATATTTAAATGGCCTGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGTCGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GAGAAATTCATTTTCCTGG--------------
----CTCATCCTGGCTCAAA-AAACTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-CC
CCCTTTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG-
GCCCCACCC-C---ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGATGCGAGTGA---------
>LTR7d1_chr21_17087734_17088180_EncodeRepressed_SOLO_7int____chr21_1708773417088180____1446
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCAGG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAACA
AGTGATATTTAAATGGCCTGTTCATGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCCGGCTCAAA-A-GCTCCCCAAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACCCC-TGCCCGCCAGAGAACAA-CC
CCC-TTTGACTGTAATTTTCCTTTACCTCCCCA-AA-CTTATAA-----------GACG-
GCCCCACCC-T-T-GTCTCCCTTTGCTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGC---------------
>LTR7d1_chr6_51938241_51944426_2534_ZNF534_KAP1_EncodeTxn_7int____chr6_5193824151938681____1439
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA
AGTGATATTTAAATGGCCTGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCTGGTCCT-------------------
------------TG------------------CC----------T-AA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TG--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAAA-AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACGCTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-CC
CCC-CT---------TTTTCCTTTACCTCCCCA-AATCTTATAA-----------GATG-
GCCCCACTA-C-T-ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTGA-----AA--TAAACAGCCTTGTTGCTCATACAAAACCTG--TTT--GGTGGTCT
CTTCACACAGACGC---------------
>LTR7d1_chr5_116822250_116822654_h3k27ac_enh_SOLO_KLF4_MED1_NANOG_7down____chr5_116822250116822654____1403
-GTCAGGCCTCTGAGCCCAAC-----------------------ATAAGCCATCATATCC
CCTGTGAC---------------------------------------------CCACATG
TATACATCCAGA------------------------------------------------
-----------------------------TGGCC--------------------------
------------------TGTTCCTGCCTTAACTGAT-----------------------
---GACATTACACCACAAAAGAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTTG--------------
----CTCAGCCTGGCTCAA--AAGCTCCCCCCC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACGCC-TGCCCGCCAGAGAACAA-CC
CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCAGATAA-----------AACA-
GCCCCACCC-C-T-ATCTCCCTTCACTGACTCCCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTGA-----AA--TAAAGAGCCTCATTGCTCACTCAAAGCCTG--TTT--GATGGTCT
CTTCACACGGACG----------------
>LTR7d1_chr3_58440917_58441370_h3k27ac_EncodeRepressed_SOLO_C_7old___chr3_5844091758441370___1447
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TATACATCCAGATGGC------------------------------------CTGAAGTA
ACT--GAAGAATCACAAAAGAAGTGAAAATGGCC--------------------------
------------------TGTTCCTGCTTTAACTGAT-----------------------
---GCCATTCCACCACAAAATAAGTGAAAATGGTCGGTCCT-------------------
------------TG------------------CC----------TTAA----GTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAACTCTCCCGC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CAACTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAA-CC
CCC-TTTGACTATAACTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG-
GCCCCACCC-C---ATCTCCCTTCGTTGACTGTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACGCGCATG----------
>LTR7d1_chr2_116190543_116190949_EncodeRepressed_SOLO_C_7down___chr2_116190543116190949___1406
TGTCAGGCCTCTGAGCCAAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TACACATCCAGATGGC------------------------------------CTG-----
------------------------------------------------------------
--------------------CTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAATAAGTGAAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATAAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCAAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCTACCCC-TGCCAGCCAGAGAAC---CC
CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AATG-
GCCCCACCC-C---ATCTCCCTTCCCTGACTCTCTTTTCAGACTCAGCCCACCTGCACCC
AGGAG-------A-TTAAAAAGCTTTATTGCTCACAAAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACACGAGTG----------
>LTR7d1_chr4_86474771_86480520_3025_ZNF534_k4me3_EncodeTxn_NANOG_chimeric_7old____chr4_8647477186475220____1441
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACA
TATACATCCAGATGGC------------------------------------CTGAAATA
ACT--GAAGAATCACAAAAGAAGTGAAAATGGCC--------------------------
------------------TGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----ATGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCGAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAA-CC
CCC-TTTGACTGTAATTTTCCTTTAGCTACCCA-AATCTTATAA-----------AACG-
GCCCCACTC-C---ATCTCTCTTCACTGACTCTCTTTTCAGACTCAGCCCACCTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGTCTG--TTT--GGTGGTCT
CTTCACACAGACAC---------------
>LTR7Y_chr2_2ltr_int_fr_865__chr2_6041743560417833_+_
-GTCAGGCCTCTGAGCCCAAC-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCATG
TATACATCCAGATGGC------------------------------------CTGAAGTA
ACT--GAAGAATCACAAAAGAAGTGAAAATGACT--------------------------
------------------TGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCCGCCAGAGAACAA-CC
CCC-TTTGACTGTAATTTTCCATCACCTTCCCA-AATCCTATAA-----------AATG-
GCCCCACCC-C--TATCTCCCTTCACTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC
AGGTG-------A-ATAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACAGGGACATGCATG----------
>LTR7d1_chrX_103429055_103435438_2990_ZNF534_k4me3_EncodeTxn_SMAD11_C_7old___chrX_103435040103435438___1397
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACA
TATACATCCAGATGGC------------------------------------CTGAAGTA
ACT--GAAGAATCACAAAAGAAGTGAAAATGGCC--------------------------
------------------TGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-CACCCGCCAGAGAACAA-CC
CCC-TTTGACTGTAATTTTCCTTTACCTACCTA-AATCCTATAA-----------AATG-
GCCCCACCC-C--TATCTCCCTTCACTGACTCTCTTTTCAGACTCAGCCCCCCTGCACCC
AGGTG-------A-ATAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGATGCGCATG----------
>LTR7d1_chr6_29296434_29296883_EncodeTxn_SOLO_NANOG_7old____chr6_2929643429296883____1448
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCGCATCC
CCTGTGAC---------------------------------------------CTGCATG
TATATGCCCAGATGGC------------------------------------CTGAAGTA
ACT--GAAGAATCACAAAATAAGTGAAAATGGCC--------------------------
------------------TGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTTTCCTGG--------------
----CTCATCCTGGCTCAA--AACCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCGCTAGAGAACAA-CC
CCC-TTTGAC--TAATTTTCCTTTACCTACCCA-AATCTTATAA-----------TATG-
GCCCCACCC-C--TATCTCCCTTAGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGATCT
CTTCACACGGACGCAGGTG-----A----
>LTR7d1_chr12_132898049_132898499_h3k27ac_EncodeTxn_SOLO_7old____chr12_132898049132898499____1448
-GTCAGGCCTCTGGGCCCAAG-----------------------CTAAGCCATCACATCC
CCTGTGAC---------------------------------------------CTGCATG
TATATGCCCAGATGAC------------------------------------CTGAAGTA
ACT--GAAGAATCACAAAAGAAGTGAAAATGGCC--------------------------
------------------TGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACTACAAAAGAAGTGAAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCTCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCTACCCC-TGCCCGCCAGAGAACAA-CC
CCC-TTTGACTGTAATTTTCCTTTACCTACTTA-AATCTTATAA-----------AACG-
GCCCCACCC-C---ATCTCCCTTTGCTGACCCTCTTTTCAGACTCAGCCCGCCTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGAGTG-----A----
>LTR7d1_chr12_66222841_66223297_EncodeTxn_SOLO_C_7old___chr12_6622284166223297___1450
TGTCAGGCCTCTGAGCCCAAG-----------------------TTAAGCTATTGCATCC
CCTGTGAC---------------------------------------------CTGCATG
TATACATCCAGATGGC------------------------------------CTGAAGTA
ACT--GAAGAATCACAAAAGAAGTGAAAATGGCA--------------------------
------------------TGTTCCTGCCTTAACTGAT-----------------------
---GATATTCCACCACAAAAGAAGTGAAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCCACAGAGAACAA-CC
CCC-TTTGACTGTAATTTTCCTTTACCTACTCA-AATCCTATAA-----------AACG-
GCTCCACCC-C--TATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TGT--GGTGGTCT
CTTCACACAGACGCGAGTG----------
>LTR7d1_chrX_33103275_33103716_EncodeRepressed_SOLO_NANOG_7old____chrX_3310327533103716____1441
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCATG
TATACGCCCAGATGGC------------------------------------CTGAAGTA
ACT--GAAGAATCACAAAAGAAGTGAAAATGGCC--------------------------
------------------TGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGGAAATGGCCTGTTCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAA-CC
CCC-TTTG----TAATTTTCCTTTACCTACCGA-AAGCTTATAA-----------AACG-
GCCCCACCC-C--TATCTCCCTTCCCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCG--------------
>LTR7d1_chr9_2275706_2281524_3190_ZNF534_k4me3_EncodeTxn_wangmod_GRO1of7_7old____chr9_22757062276105____1391
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCCGTGAC---------------------------------------------CTGCACA
TATACATCCAGACGGC------------------------------------TTGAAGTA
ACT--GAAGAATCACAAAAGAAGTGAAAATGGCC--------------------------
------------------TGTTCCTGCCTT------------------------------
------------------------------------------------------------
----------------------------------------------AA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCGTTTCCTGG--------------
----CTCATCCTGGCTCAA--AATCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCTACTCC-TGCCCGCCAGAGAACAA-CC
CCC-TTTGAC--TAATTTTCCTTTGCTTACCCA-AATCTTATAA-----------AACG-
GCCCCACCC-T---ATCTCCCTTC----ACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTG-------A-TTAAA-AGCTTCATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGAGTG-----A----
>LTR7d1_chr15_26719883_26720337_h3k27ac_weakenh_SOLO_NANOG_SOX2_7old____chr15_2671988326720337____1447
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACA
TATACATTCAGATGGC------------------------------------CTGAAGTC
ACT--GAAGAATCACAAAAGAAGTGAAAATGGCC--------------------------
------------------TATTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCGGTCGT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCTTTCTCCTGG--------------
----CTCAACCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTCATG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-CC
CCC-TTTGAC--TAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCTACCC-C---ATCTCCCTTCACTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC
AGGTG-------A-TTAAA-ACCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGTGAGTG-----A----
>LTR7d1_chrX_28892120_28898168_3009_ZNF534_k4me3_EncodeRepressed_NANOG_GRO5of7_GRO6of7_GRO7of7_C_7old___chrX_2889771428898168___1447
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTACACA
TATACATCCAGATGGC------------------------------------CTGAAGTA
ACT--GAAGAATCACAAAAGAAGTGAAAATGGCC--------------------------
------------------TGTTCCTGCCTTAACTAAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGGCCGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCCTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTCTG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-CC
CCC-TTTGAC--TAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACA-
GCCCCACCC-C---AACTCCCTTCCCTGACTTTCTTTTCAGACTCGGCCCACCTGCACCC
AGGTG-------A-TTAAA-AGCTTTATTGCTCACACAAAACCTG--TTT--GGTGGTCT
CTTCACACAGACGCGAGTG----------
>LTR7d1_chr2_150112717_150118564_1797_ZNF534_EncodeTxn_GRO3of7_7old____chr2_150112717150113169____1445
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACA
TATACATCCAGATGGC------------------------------------CTGAAGTA
ACT--GAAGAATCACAAAAGAAGTGAAAATGGCC--------------------------
------------------TGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCACAAAAGAAGTGAAAATGTCCGGTCCT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AACCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-CC
CCC-TTTGAC--TAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACA-
GCCCCACCT-C---ATCTCCCTTTGCCGACT--CTTTTCGGACTCAGCCCGCCTGCACCC
AGGTG-------A-TTAAA-AGCTTTATTTCTCACACAAAGCCTG--TTT--GGTGGTCA
CTTCACACAGACGCGAGTG-----A----
>LTR7d1_chr2_82005634_82006082_weakenh_SOLO_NANOG_SMAD11_7old____chr2_8200563482006082____1448
-GTCCAGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCAGG
TATACATCCAGATGGC------------------------------------CTGAAGTA
ACT--GAAGAATCACAAAAGAAGTGAAAATGGCC--------------------------
------------------TGTTCCTGCCTTAACTGAT-----------------------
---TACATTCCACCACAAAAGAAGTGAAAATGGCCAGTCCC-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACCCT-TGCCAGCCAGAGAACAA-CC
CCC-TTTGAC--TAATTTTCCTTTACGTACCCA-AATCTTATAA-----------AACG-
GCCCCACCC-C---ATCTCCCTTTGCTGACTGTCTTTTCAGACTCCGTCCACCTACACCC
AGGTG-------A-TTAAA-AGCTTTATGGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACGTGAGTG-----A----
>LTR7d1_chr11_49320583_49326841_2645_1_EncodeTxn_TCF4_GRO5of7_GRO6of7_GRO7of7_C_7old___chr11_4932647549326841___1358
TGTCAGGCCTCTGAGCCCAAG-----------------------CT--------------
------------------------------------------------------TGCACG
TATACATCCAGATGGC------------------------------------CTGAAGTA
ACT--GAAGAGTCACAAAAGAAGAGCAAATAGCC--------------------------
------------------AGTTCCTGC---------------------------------
------------------------------------------------------------
---------------------------------C----------TT-------TGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTG---------------
-------------GCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCATCCC-TGCCTGCCAGAGAACAA-CC
CCC-TTTGAC--TAATTTTCCATTACCTACCCA-AATCCTATAA-----------AATG-
GACCCAAAC-C--TATCTCCCTTCCTTGACTCTCTTTTCAGACTCAGCCCATCTGCACCC
AGGTG-------A-TTAAA-AGCTTTATTGCTTAGCCAAAGCCTG--TTT--GGTGGTCT
CTTCACGCTGACGTGAGTG----------
>LTR7d1_chr11_89381304_89387559_2623_1_EncodeTxn_GRO4of7_7old____chr11_8938130489381670____1357
-GTCAGGCCTCCGAGCCCAAG-----------------------CC--------------
------------------------------------------------------TGCACG
TATACATCCAGATGGC------------------------------------CTGAAGTA
ACT--GAAGAGTCACAAAAGAAGAGAAAATGGCC--------------------------
------------------GGTTCCTGC---------------------------------
------------------------------------------------------------
---------------------------------C----------TT-------TGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTG---------------
-------------GCCCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACTTTGTG--------------
---------------------------AC-CCCCATCCC-TGCCTGCCAGAGAACAA-CC
CCC-TTTAAC--TAATTTTCCATTACCTACACA-AATCCTATAA-----------AATG-
GACCCAAAC-C--TATCTCCCTACCTTGGCTCTCTTTTCAGACTCAGCCCATCTGCACCC
AGGTG-------A-TTAAA-AGCTTTATTGCTTAGCCAAAGCCTG--TTT--GGTGGTCT
TTTCACGCTGACATGAGTG----------
>LTR7o_chrY_16851802_16852234_SOLO_C_7old___chrY_1685180216852234___1432
TGTCAGGCCTCTGAGCCCACG-----------------------CTAAGCCATCATATTC
CCTGTGAC---------------------------------------------CTGCACG
TATATATCCAGATAGC------------------------------------CTGACATA
ACT--GAAGAATAAGAAAAGAAGTGAAAATGGCC--------------------------
------------------TGTTCATGC---------------------------------
------------------------------------------------------------
---------------------------------C----------TTAG----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGTTCCGCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------AAG----CACCTTGTG--------------
---------------------------AC-CCCTGCCCC-TGCCTGCCAGAGAAAAA-CC
CCC-TTTAAC--TAATTTTCCACTACCCACCCA-AATCTTATAA-----------AACG-
GCCCCACCC-C--TATCTCCCTT----------------GGACTCAGCCCACCTGCACCT
AGGTG-------A-TTAAA-AGCTTTACTGCTCACACAGAGTCTA--TTT--GGTGGTCT
CTTCACACAGATGTGAATG----------
>LTR7o_chr21_29750841_29751229_EncodeRepressed_SOLO_C_7old___chr21_2975084129751229___1388
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TATACATCCAGATGGC------------------------------------CTGAAGTA
ACT--GAAGAATCACAAAAGAAGTGAAAATGGCT--------------------------
------------------GGTCCATGC---------------------------------
------------------------------------------------------------
---------------------------------C----------TTAG----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGGTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCTGTCCC-TGCCTGCCAGCGAACAA-CC
CCC-TTTGAC--TAATTTTCCACTATCCACCCA-AATCTTATAA-----------AACG-
GCCCCACCC-C--TATCTCCCTTCGCTGACTCT--TTTCGGACTCAGTCCGCCTGCACCC
AGGTG-------A-TTAAA-AGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGAC-----------------
>LTR7o_chr2_224087354_224093515_2787_ZNF534_EncodeRepressed_C_7old___chr2_224093108224093515___1397
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATTGTATCC
CCTGTGAC---------------------------------------------CTGCACG
TATACATCCAGATGAC------------------------------------CTGAAGTA
ACT--GAAGAATCACAAAAGAAGTGAAAATGGCT--------------------------
------------------GGTCCCTGC---------------------------------
------------------------------------------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACCCC-TGCCTGCCAGAGAACAA-CC
CCC-TTTGAC--TAATTTTCCACTGCCCACCCA-AATCTTATAA-----------AATG-
GCCCCACCC-C--TATCTCCCTTCACTGACTCTCTTTTTGGACTCAGCCCACCTGCACCC
AGGTG-------A-TTAAA-AGCTTCATTGCTCACACAAAGCCTG--TTT--GCTGGTCT
CCTCACACGGACGCAAGTG----------
>LTR7d1_chr6_27378256_27378712_h3k27ac_enh_SOLO_NANOG_C_7old___chr6_2737825627378712___1394
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCGCATCC
CCTGTGAC---------------------------------------------CTGCACG
TATACATGCAGATGGC------------------------------------CTGAAGTA
ACT--GAAGAATCACAAAAGAAGTGAAAATGGCC--------------------------
------------------TGTTCCTGC---------------------------------
------------------------------------------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AATCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACCCC-TGCTCACCAGAGAACAA-CC
CCC-TTTGAC--TAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG-
GCCCCACCC-C--TATCTCCCTTCGCTGACTCTCTTTTTGGACTCAGCCCACCTGCACCC
AGGTG-------A-TTAAA-AGCTTTATTGCTCACACAAAGCCTG--TTT--AGTGGTCT
CTTCACACTGACGTGAGTG----------
>LTR7d1_chr22_34840713_34841164_h3k27ac_enh_SOLO_NANOG_C_7old___chr22_3484071334841164___1390
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATAGCATCC
CCTGTGAC---------------------------------------------CTGCATG
TATACATCCAGATGGC------------------------------------CTGAAGTA
ACT--GAAGAATCACAAAAGAAGTGAAAATGGCC--------------------------
------------------TGTTCCTGC---------------------------------
------------------------------------------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCTTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACCCC-TGCCTGCCAGAGAACAA-CC
CCC-TTTGAC--TAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AATG-
GCCCCACCC-T--TCTCTCCCTTCGCTGAC--TCTTTTTGGACTCAGCCTGCCTGCACCC
AGGTG-------A-TTAAA-AGCTTTATTGCTCACACAAAACCTG--TTT--AGTGGT--
CTTCACATGGACATGAGTG----------
>LTR7d1_chr10_45571174_45576085_2178_ZNF534_k27ac_EncodeTxn_7old____chr10_4557117445571568____1390
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAACTATCATATCC
CCTGTGAC---------------------------------------------CTGCACC
TATACATCAAGATGGC------------------------------------CTGAAGTA
ACT--AAAGAATCACAAAAGAAGTGAAAATAGCC--------------------------
------------------TGTTTCTGC---------------------------------
------------------------------------------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCGACCCC-TGCCCACCAAAGAACAA-CC
CCC-TTTAAC--TAATTTTCCTTTACCCACCCA-AATCCTATAA-----------AATG-
GCCCCACCC-T--T-TCTCCCTTTGCTGACTCTCTTTTTGGACTCAGCCCACCTGCACCC
AGGTG-------A-TTAAA-AGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACA--GACGTGAGTG----------
>LTR7d1_chr1_98801055_98806858_2915_ZNF534_EncodeTxn_GRO5of7_GRO6of7_GRO7of7_C_7old___chr1_9880641598806858___1437
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCAC-
TATACATCCAGATGGC------------------------------------CTGAAGTA
ACT--GAAGAATCACAAAAGAAGTGAAAATGGCC--------------------------
------------------TGTTCCTGCCTTAACTGAT-----------------------
---GACATTCCACCAAAAAATAAGTGAAAATGGCCAGTCTT-------------------
------------TG------------------CC----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATAATGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCATTCC-TGCCTGCCAGAGAACAA-CC
CCC-T----------TTTTCCTTCACCTACCCA-AATCTTATAA-----------AATG-
GCCCCACCC-T--TATCTCCCTTTGCTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC
AGGAG-------A-TTAAA-AGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACGCAAGTG----------
>LTR7d1_chr1_82354569_82360556_2636_ZNF534_KAP1_k27ac_EncodeTxn_GRO4of7_C_7old___chr1_8236016182360556___1395
TGTTAGGCCTATGAGCCTAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TATACATCCAGATGGC------------------------------------CTGAAGTA
ACT--GAAGAATCACAAAAGAAGTGAAAATGGCC--------------------------
------------------TGTTCCTGC---------------------------------
------------------------------------------------------------
---------------------------------C----------TTAA----CTGATGAA
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------GAG----CACCTTGTG--------------
---------------------------AC-TCCCGCCCC-TGCCTGCCAAAGAACAA-CC
CCC-TTTGAC--TAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C--TATCTCCCTTTGCTGACTCTTTTTTCGGACTCAGCCTGCCTGCACCC
AGGTG-------A-TTAAA-AGCTTTATTGCTCACACAAATCCTA--TTT--GGTGGTCT
CCTCATACGGACGCGAGTG----------
>LTR7o_chr15_74354144_74359784_1679_ZNF534_KAP1_EncodeTxn_7old____chr15_7435414474354537____1385
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCGTCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TATACATCCAGATGGC------------------------------------CTGAAATA
ACT--GAAGAATCACA-AAGAAGTGAAAATGGCC--------------------------
------------------TGTTCCTGC---------------------------------
------------------------------------------------------------
---------------------------------C----------TTAA----CTGATAAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTC------------------
---------TCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACCCC-TGCCAGCCAAAAAACAA-CC
CCC-TTTGAC--TAATTTTCCATTACCTACCCA-AATCCTATAA-----------AACA-
GCCCCACCC-C--TATCTCCTTTTGCTGA--CTCTTTTCGGATTCAGCCTGCCTGCACCC
AGGTG-------A-TTAAA-AGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACAGGGACACGCATG-----A----
>LTR7o_chr11_83341985_83345578_2049_ZNF90_KAP1_EncodeRepressed_GRO3of7_C_7old___chr11_8334518783345578___1391
TGCCAGGCCTCTGAGCCCAAA-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACA
TATACATCCAGATGGC------------------------------------CCGAAGTA
ACT--GAAGAATCACAAAAGAAGTGAAAATGGCC--------------------------
------------------TGTTCCTGC---------------------------------
------------------------------------------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTAG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAA---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACCCC-TGCCAGTCAAAGAA------
CCC-TTTGAC--TAATTTTCCACTACCTACCTA-AATCCTATAA-----------AACG-
GCCCCACCC-C---ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC
AGGTG-------A-TTAAA-AGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGAACACGTGTG----------
>LTR7d1_chr17_19458339_19458728_h3k27ac_enh_SOLO_NANOG_C_7old___chr17_1945833919458728___1389
TGTCAGGCCTCTGAGCTCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TATACATCCAGATGGC------------------------------------CTGAAGTA
ACT--GAAGAATCACAAAAGAGATGAAAATGACC--------------------------
------------------TGTTCCCGC---------------------------------
------------------------------------------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GCGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACCCC-TGCCAGCCAGAGAACAA-CC
CCC-TTTGAC--TAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C--TATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGACTGCACCC
AGGTG-------A-TTAAA-AGCTTTATTGCTCACATAAAGCCTG--TTT--GGTGGGCT
CTTCACAAGGACGC---------------
>LTR7d1_chr19_47296710_47297157_EncodeTxn_SOLO_7old____chr19_4729671047297157____1392
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAT---------------------------------------------CTGCACG
TATACATCCAGATGGC------------------------------------CTGAAGTA
ACT--GAATAATCACAAAAGGAGTGAAAATGGCC--------------------------
------------------TGTTCCTGC---------------------------------
------------------------------------------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TC--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCACCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACCCC-TGCCAGCCAGAGAACAA-CC
CCC-TCTGAC--TAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACA-
GCTCCACCC-C---ATCTCCCTTCGCTGACTCCCTTTTTGGACTCAGCCCTCCTGCACCC
AGGTG-------A-TTAA--AGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTGT
CTTCACACGGACGCGAGTG----------
>LTR7d1_chr12_75484505_75484896_enh_SOLO_C_7old___chr12_7548450575484896___1389
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCT
CCTGTGAC---------------------------------------------CTGCACG
TATACATCCAGATGGC------------------------------------CTGAAGTA
ACT--GAGGAATCACAAAAGAAGTGAAAATGCCC--------------------------
------------------TGTTCCTGC---------------------------------
------------------------------------------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-TCCCACCCC-TGCCAGCCAGAGAACAA-CC
CCC-TTTGAC--T-ATTTTCCATT----ACCCA-AATCCTATAA-----------AACA-
GCTCCACCC-C---ATCTCCCTTCATTGACTCTCTTTTTGAACTCAGCCTGCCTGTACCC
AGGTG-------A--TAAA-AGCTTTATTGCTCACACAAAGACTG--TTT--GGTGGTCT
CTTCACAAGGACGCAAGTG----------
>LTR7o_chr7_43436367_43436754_h3k27ac_EncodeRepressed_SOLO_C_7old___chr7_4343636743436754___1386
TGTCAGGCCTCAGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAT---------------------------------------------CTGCACG
TATACATCCAGATGGC------------------------------------CTGAAGTA
ACT--GAAAAATCACAAAAGAAGTGAAAATGGCC--------------------------
------------------TGTTCCTGC---------------------------------
------------------------------------------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTC----------AG--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACCCC-TGCCTGCCAGAGAACAA-CC
TCC-TTTGAC--TAATTTTCCACTGTCTACCCA-AATCCTGTAA-----------AACA-
GCCCCACCC-T---ATCTCCCTTCGCTGACTCCCTTTTCGGACTCAGCCTGCCTGCGCCC
AGGTG-------A-TTAAA-AGCTTTATTGCTCAGACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGAACACACGTG----------
>LTR7o_chr6_68070059_68070457_h3k27ac_enh_SOLO_NANOG_SOX2_7old____chr6_6807005968070457____1397
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAATCCATCATATCT
CCTGTGAT---------------------------------------------CTGCACC
TATACATCCAGATGGC------------------------------------CTAAAGTA
ATG--GAAGAATCACAAAAGAAGTGATAATGGCC--------------------------
------------------TGTTCCTGC---------------------------------
------------------------------------------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACCCC-TGCCAGTCAGAGAACAA-CC
CCC-TTTGAC--TAATTTTCCACTACCTACCCA-AATCCTATAA-----------AATG-
GCCCCACCC-C---ATCTCCCTTCGCTGACTCTCTTTTTGGACGCAGCCTGCCTGCACCC
AGGTG-------A-TTAAA-AGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTGT
CTTCACACGGACACACGTG-----A----
>LTR7o_chr8_7393593_7393977_EncodeRepressed_SOLO_C_7old___chr8_73935937393977___1384
TGTCAGACCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TATACATCCAGATGGC------------------------------------CTGAAGTA
ACT--GAAGAATCACAAAAGAAGTGAAAATGGAC--------------------------
------------------TGTTCATGC---------------------------------
------------------------------------------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTGGCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCTCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CAACTTGTG--------------
---------------------------AC-CTCCACCCC-TGCCAGCCAGAGAACAA-CC
CCC-TTTGAC--TAATTTTCCATTACCTACTCA-AATCCTGTAA-----------AACG-
GCCCCACCC-C--TATCTCCCTACGCTGACTC-------------AGCCCACCTGCACCC
AGGTG-------A-TTAAA-AGCTTTATTGCTCACATAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGATGCACGTG----------
>LTR7o_chr8_7917928_7918312_EncodeTxn_SOLO_7old____chr8_79179287918312____1384
-GTCAGACCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TATACATCCAGATGGC------------------------------------CTGAAGTA
ACT--GAAGAATCACAAAAGAAGTGAAAATGGAC--------------------------
------------------TGTTCATGC---------------------------------
------------------------------------------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTGGCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCTCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CAACTTGTG--------------
---------------------------AC-CTCCACCCC-TGCCAGCCAGAGAACAA-CC
CCC-TTTGAC--TAATTTTCCATTACCTACTCA-AATCCTGTAA-----------AACG-
GCCCCACCC-C--TATCTCCCTACGCTGACTC-------------AGCCCACCTGCACCC
AGGTG-------A-TTAAA-AGCTTTATTGCTCACATAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGATGCACGTG-----A----
>LTR7d1_chr13_33491863_33492257_EncodeTxn_SOLO_C_7old___chr13_3349186333492257___1393
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACA
TATACATCCAGATGGC------------------------------------CTGAAGTA
ACT--GAAGAATCACAAAGGAAGTGAAAATGGCC--------------------------
------------------TGTTCCTGC---------------------------------
------------------------------------------------------------
---------------------------------C----------TTAA----CTGATGAC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGC--------------
----CTCATCCTGGCTCAA--AAGCTCCCTTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACCCC-TGCCCGCCAAAGAACAA-CC
CCC-TTTGAC--TAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C--TGTCTCCCTTC-CTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTG-------A-TTAAA-AGCTTTATTGCTCACATAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGCGAGTG----------
>LTR7d1_chr8_13821388_13821771_EncodeRepressed_SOLO_C_7old___chr8_1382138813821771___1362
TGTCAGGCCTCTGAGCCCAA----------------------------------------
------AC---------------------------------------------CCACATG
TATACATCCAGATGGC------------------------------------CT-----A
ACT--GAAGGATCACAGAAGAGGTGAAAATGGCC--------------------------
------------------TGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------TCC--------TT--GTGAAATTCCTTCT---GG--------------
----CTCATCCTGGCTCAA--AACCTCCCCAAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CATCTTGTG--------------
---------------------------TC-CCCCACCCC-TGCCGGCCAGAGAACAA-CC
CCC-ATTGACT--AATTTTCTACTACCTACCCA-AATCCTATTA-----------AACG-
GCTCCACCC-C--TATCTCCCTTTGCTGACTCTCTTTTCTGACTCAGCCCACCTGTACCC
AGGTG-------A-TTAAA-AGCTTTATTG-TCACCCAAAGCCTG--TTT--GGTGATCT
CTTCACACGGACATGAGTG----------
>LTR7o_chr6_61600186_61606272_2889_ZNF534_KAP1_EncodeRepressed_GRO3of7_7old____chr6_6160018661600634____1448
-GTCAGGCCTCTGAACCCAAG-----------------------CTAAGCCATCATATCC
CTTGTGAC---------------------------------------------CTACATG
TATACATCCAGATAGC------------------------------------CTGAAGTA
ACT--GAAAAATCACAAAAGAAGTGAAAATGGCC--------------------------
------------------TGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------AT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTTCCCAAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AA-CCCCGCCCC-TGCCAGCCAGAGAACAA-CC
CCC-TTTGACTGTAATTTTCCACTACCCACCCA-AATCTTATAA-----------AACA-
GCCACACCC-C--TATCTCCCTTCACTGAGTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGAG-------A-TTAAAAAGCTTTACTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGCGAGTG-----A----
>LTR7o_chr2_201221304_201221701_enh_SOLO_7old____chr2_201221304201221701____1397
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CTTGTGAC---------------------------------------------CTGCACA
TATATATCCAGATGGC------------------------------------CTGAAGTA
ACT--GAAGAATCACAAAAGAAGTGAAAATGGCC--------------------------
------------------TGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAG---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCATCCC-TGCCAGCCAGAGAACAA-CC
CCC-TTTGACTGTAATTTTCCACTACTTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C--TATCTCCCTTCACTGACTTTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTTGTCT
CTTCACAAGGACGCGAGTG-----A----
>LTR7o_chrX_529618_530006_EncodeRepressed_SOLO_C_7old___chrX_529618530006___1386
TGTCAGGCCTCTGAGCCCAAG-----------------------CGAAGCCATCATATGC
CCTGTGAC---------------------------------------------CTGCACA
TATACATCCAGATGGC------------------------------------CTGAAGTA
ACC--GAAAAATCACGAAAGAAGTGAAAATGGCT--------------------------
------------------TGTTCCTGCCTTAAGCGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
TTT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCCTCTCCTGG--------------
----CTCATCCTGGCTCAA-----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------TC-ACCTGCCCC-TGCCAGCCAGAGAACAA-CC
CCC-TTTGATTGTAATTTTCCACTATGTACCCA-AATCCTATAA-----------AACG-
GCCCCGCCC-G--TATCTCCCTGCAGTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTG-------A-TTAAAAAGTTTTATTGCTCACATGAAGTCTG--TTT--CGTGGTCT
CTTCACACGGACACGTGTG-----A----
>LTR7o_chrY_529618_530006_SOLO_C_7old___chrY_529618530006___1386
TGTCAGGCCTCTGAGCCCAAG-----------------------CGAAGCCATCATATGC
CCTGTGAC---------------------------------------------CTGCACA
TATACATCCAGATGGC------------------------------------CTGAAGTA
ACC--GAAAAATCACGAAAGAAGTGAAAATGGCT--------------------------
------------------TGTTCCTGCCTTAAGCGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
TTT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCCTCTCCTGG--------------
----CTCATCCTGGCTCAA-----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------TC-ACCTGCCCC-TGCCAGCCAGAGAACAA-CC
CCC-TTTGATTGTAATTTTCCACTATGTACCCA-AATCCTATAA-----------AACG-
GCCCCGCCC-G--TATCTCCCTGCAGTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTG-------A-TTAAAAAGTTTTATTGCTCACATGAAGTCTG--TTT--CGTGGTCT
CTTCACACGGACACGTGTG-----A----
>LTR7o_chr1_163591309163596529_2697_ZNF534_KAP1_EncodeTxn_GRO2of7__chr1_163591309163591705____1396
-GTCAGGCCCCCGAGCCCATG-----------------------CTAAGCCATCATATCC
CCTGCGAC---------------------------------------------CTGCAGG
TATACATCCAGGTGGC------------------------------------CTGAAGTA
ATT--GAAGAATCACAAAAGAAGTGAAAATGGCC--------------------------
------------------TGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------TC-CCCTGCCCC-TGCCAGCCAGAGAACAA-CC
CCC-TTTGACTATAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C--TATATCCCTTCACTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTG---GTGGTCT
CTTCACACAGACATGTGTG-----A----
>LTR7o_chr9_98274907_98275303_h3k27ac_EncodeTxn_SOLO_C_7old___chr9_9827490798275303___1396
TGTCAGGCCTGTGCGCCCAAG-----------------------CTAAGGCATCATATCC
CCTGTGAC---------------------------------------------CTGCACA
TATACATCCAGATGGC------------------------------------CTGAAGTA
ACT--GAAGAATCACAAAAGAAGTGAAAATGGCC--------------------------
------------------TGCTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCAAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------TC-CCCCGCCCC-TGCCCGCCAGAGAACAA-CC
CCC-TTTGACTGTAATTT-CCACTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C--TATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTA-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGATGCGCGTG----------
>LTR7o_chr22_33834286_33834682_SOLO_7old____chr22_3383428633834682____1396
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TATACATCCAAATGGC------------------------------------CTGAAGTA
ACT--GAAGAATCACAAAAGAAGTGAAAATGGCA--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAACTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAG---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------TC-CCCCACCCC-TGCCAGCTAGAGAACAA-CC
CCC-TTTGATTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACA-
GCCCCACCC-C---ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACGCAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGAGTG-----A----
>LTR7o_chrX_123777297_123777730_weakenh_SOLO_FOXP1_7old____chrX_123777297123777730____1397
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TATATATCCAGATGGC------------------------------------CTGAAGCA
ACT--GAAGAATCACAAAAGAAGTGAAAATGGCC--------------------------
------------------TGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------GC
CTT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------TC-CCCCACCCC-TGCCAGCCAGAGAACAA-CC
CCC-TTTGACTGTAATTTTCCACCACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C--TATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCTGCCTGCCCCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTAGTCT
CTTTACACGGACGCGCGTG-----A----
>LTR7o_chr1_192793880_192794256_enh_SOLO_C_7old___chr1_192793880192794256___1375
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCATG
TATACATCCAGATGGC------------------------------------CTGAAGTA
ACT--GACGAATCACAAAAGAAGTGAAAATGACC--------------------------
------------------TGTT--------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------CC--------TT--GTGAAATTTCTTCTCCTGG--------------
----CTCATCCTGGCTTAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----GACCTTGTG--------------
---------------------------AC-CCCCACCCC-TGCCAGCCAGAGAACAA-CT
CCC-TTTGACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AATG-
GCCCCACCC-C---ATCTCCCTTCACTGACTTTCTTTTAGGACTCAGCCCACCTGTGCCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACACGTGTG-----A----
>LTR7o_chr17_80258157_80258544_enh_SOLO_C_7old___chr17_8025815780258544___1386
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TATACATCCAGATGGC------------------------------------CTGAAGTA
ACT--GAAGAATCATAAAAGAAGTGAAAATGGCC--------------------------
------------------TGTTTCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGC--------------CCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTA--------------
---------------------------TC-CCCCACCCC-TGCCAGCCAGAGAACAA-CC
CCC-TTTGACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AATG-
GCCCCACCC-C---ATCTCCCTTCACTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACACGCTTG-----A----
>LTR7o_chr4_100991693_100997475_2658_ZNF534_EncodeRepressed_GRO5of7_GRO6of7_GRO7of7_C_7old___chr4_100997079100997475___1396
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TATACATCCAGATGGC------------------------------------CTGAAGTA
ACT--GAATAATCACAAAAGAAGTGAAAATGGCC--------------------------
------------------TGTTTCTGCCTTAACTGGT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------TC-CCCTGCCCC-TGCCTGCCAGAGAACAA-CC
CCT-TTTGACTGCAATTTTCCACTACCTACCCA-AATCCTATAA-----------AATG-
GCCCCACCC-C---ATCTGCCTTCCCTGACTCTCTTTTTGGACTCAGCCCACCTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACGCAAAGCCTG--TTT--GATGATCT
CTTCACATGGA------------------
>LTR7o_chrX_30193877_30194266_EncodeRepressed_SOLO_7old____chrX_3019387730194266____1380
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TATACATCCAGATGGC------------------------------------CTGAAGTA
ACT--GAAGAATCACAAAAGAAGTGAAAATGGCC--------------------------
------------------TGTTTCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CA-----GG--------------
---------------------------TC-CCCCGCCCC-TGCCCACCAGAGAACAA-CC
CCC-TTTGACTGTAATTTTCCACTACCTACCCA-AATCTTATAA-----------AACG-
GCCCCACCC-C---ATCTCCCTTTCCTGACTCT--TTTCAGACTCAGCCCACCTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACACAGCCTG--TTT--GGTGGTCT
CTTCACATGGA------------------
>LTR7o_chr10_89284720_89290887_2820_ZNF534_KAP1_k4me3_EncodeTxn_GRO5of7_GRO6of7_GRO7of7_7old____chr10_8928472089285118____1396
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATAC
CCTGTGAC---------------------------------------------CTGCACG
TATAAATCCGGATGAC------------------------------------CTGAAGTA
ACT--GAAGAATCACAAAAGAAGTGAAAATGGCC--------------------------
------------------TGTCCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCCAG--------------
----CTCTTCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------CC-CCCCACCCC-TGCCAGCCAGAGAACAT-CC
GCC-TTTGACTGTAATTTTCCACTATCTACCCA-AATCTTATAA-----------AAAC-
AGCCCATCC-C---ATCTCCCTTCACTGACTCTCTTTTTGGACTCAGCTCGCCTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGCGAGTG-----A----
>LTR7o_chr3_98256003_98256389_weakenh_SOLO_C_7old___chr3_9825600398256389___1385
TGTCAGGCCTTTGAGCCCACG-----------------------CTAAGCCATCATATCT
CCTGTGAC---------------------------------------------CTGCAC-
TATACATTCGGATGGC------------------------------------CTGAAGTA
ACT--GAAGAATCACTAAAGAAGTGAAAATGGCC--------------------------
------------------TGTTCCTGCCTTAACTGAA-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACT--------TT--GTGAAATTCCTTC--------------------
--------TCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------TC-CCCCGCCC---GTCTGCCAGAGAACAA-CC
CCC-TTTGACTGTAATTTTCCACTACCTACCCA-AATTCTATAC-----------AATG-
GTCCCACCC-C---ATCTCCCTTTACTGACTCTCTTTTTGGACTCAGCCTGCCTGCACCC
AGGTG-------A-TTAAAAAGCTTTATCGCTCACACAAAGCCTG--TTT--GGTGGTCT
CCTCACACAGACGCGTGTA-----A----
>LTR7o_chr2_142489679_142495325_2737_ZNF534_EncodeRepressed_GRO5of7_GRO6of7_GRO7of7_C_7old___chr2_142494953142495325___1372
TGTCAGGCCTCTGAGC-----------------------------TAAGCCATCATATCT
CCTGTGAC---------------------------------------------CTGCACG
TATACATCCAGATGGC------------------------------------CTGAAGTA
ACT--GAAAAATGACAAAAGAAGTGAAAATGGCC--------------------------
------------------CGTTCCTACCTTAACAGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATT----CTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTGGTG--------------
---------------------------AC-CTCCACCCC-TGCCAGCCAGAGAACAA-CC
CCC-TTTGACTGTAATTTTCCACTACCTACCCA-AATGTTATAA-----------AATG-
GCCCCACCC-C---ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCAC------CAGG--TTT--GGTGGTCT
TTTCACATGGA------------------
>LTR7o_chr15_82702377_82708400_2785_ZNF534_EncodeTxn_7old____chr15_8270237782702774____1397
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAACCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TATATATCCAGATGGC------------------------------------CTGAAGTA
ATT--GAAGAATCACAAAAGAAGTGAAAATGGCC--------------------------
------------------TGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------TC-CCCCGCCCC-TGCCCACCAAGGAACAC-CC
CCC-TTTGACTGTAATTGTCCACTACCTACCCA-AATCCTATAA-----------AATG-
GCCCCACCC-C--TATCTCCTTTCGTTGACTCTTTTTTCAGACTCAGCCGGCCTGCAACC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTG--GGTGGTCT
CTTCACATGGACGTGCGTG-----A----
>LTR7o_chr6_86458455_86458852_EncodeTxn_SOLO_7old____chr6_8645845586458852____1395
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCATA
TGTGTATCCAGATGGC------------------------------------CTGAAGTA
CGA--GAAGAATCACAAAAGAAGTGAAAATGGCA--------------------------
------------------TGTCCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------TC-CCCCACCCC-TGCCCACCAGAGAACA--AC
CCC-TTTGACTGTAATTTTCCACTACCCACCCA-AATTCTATAA-----------AACG-
GCCC-ACCC-C--TATCTCTCTTCACTGACTCTCTTTTCAGACTCAGTCCGCCTGCAACC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACAAAAAGCCTG--TTT--GGCGGTCT
CTTCACATGGACGTGCATG-----A----
>LTR7o_chr7_7577891275781936_1469_ZNF534_KAP1_k4me3_TSS_chimeric_GRO2of7__chr7_7577891275779306____1384
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCAGTGAC---------------------------------------------CTGCACG
TATACATCCAGATGGC------------------------------------CTGAAGTA
ACT--GAAGAATCACAAAAGAAGTGAAAATGGCC--------------------------
------------------TGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTC--------------------
--------TCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------TC-CCCCACCCC-TGCCCGCCAGAGAACAA-CC
CCA-TTTGACTGTAATTTTCCATTACCTACCCA-AATCCTATAA-----------AACA-
GCCCCACCC-C--TATCTCCCTTCGCTGACTC--TTTTCAGACTCAGCCCGCCTGCACTC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAATCCTG--TTT--GGTGGTCG
CTTCACACGGACGCGAGTG----------
>LTR7o_chr7_75788164_75788562_h3k27ac_enh_SOLO_NANOG_44108_chimeric_7old____chr7_7578816475788562____1387
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCGTCGTATCC
CCAGTGAC---------------------------------------------CTGCACG
TATACATCCAGATGGC------------------------------------CTGAAGTA
ACT--GAAGAATCACAAAAGAAGTGAAAATGGCC--------------------------
------------------TGTTCTTGCCTTAATTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTC--------------------
--------TCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------TC-CCTCACCCC-TGCCCGCCAGAGAACAA-CC
CCT-TTTGACTGTAATTTTCCATTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C--TATCTCCCTTGGCTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC
AGGTG-------A-CTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGCGAGTG-----A----
>LTR7o_chrY_12368822_12369229_SOLO_C_7old___chrY_1236882212369229___1398
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCATG
TATACATCCAGATGGC------------------------------------CTGAAGTA
ACT--GAAGAACCACAAAAGAAGTGAAAATGGCC--------------------------
------------------TGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTTATCCTGGCTCAA--ACGCTCTCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCTGCCCC-TGCCTGCCAGGAAACAA-CC
TTC-TTTGACTGTAATTTTCCACTACCTACTCA-AATCTTATAA-----------AATG-
GCCCCATCC-C--CATCTCCCTTCGCTGACTCTCTTTTTGGACTCAGCCTGCCTGCACCC
AGGTG-------A-ATAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCC
CTTCACAAGGACATGAGTG----------
>LTR7o_chr5_104039751_104040201_EncodeTxn_SOLO_C_7old___chr5_104039751104040201___1398
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CACATGAC---------------------------------------------CTGCACG
TATACATCCAGATGGC------------------------------------CTGAAGTA
ACT--GAAGAATCACAAAAGAAGTGAAAATGGTC--------------------------
------------------TGTTTCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGCCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------GC-CCCTGCCCC-TGCCCACCAGAAAACAA-CG
CTC-TTTGACTGTAATTTTCCACTACCCACCCA-AATCTTATAA-----------AACG-
GCCCCACCC-C--TATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCTGACTGCACCC
AGGTG-------A-ATAAACAGCTTTACTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGTGAGTG----------
>LTR7o_chr2_52337661_52338058_h3k4me3_EncodeTxn_SOLO_NANOG_7old____chr2_5233766152338058____1396
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TATACATCCAGACGGC------------------------------------CTGAAGTA
ACT--TAAGAATCACAAAAGAAGTGAAAATGGCC--------------------------
------------------TGTTCCTGCCTT-ACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCCGCCAGAGAACAA-CC
CCC-TTTGACTGTAATTTTCCACTACCCACCCA-AATCTTATAA-----------AACA-
GCCCCACCT-C--TATCTCCCTTCGCTGACTCTTTTTTCTGACTCAGCCCGCCTGAACCC
AAGTG-------A-TTAAAAAGCTTTAGTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACACGAGTG-----A----
>LTR7o_chr2_224215695_224216135_h3k27ac_EncodeTxn_SOLO_NANOG_C_7old___chr2_224215695224216135___1388
TGTCAGGCCTCTGAGCCCAAT-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TATACATCCAGATGGC------------------------------------CTGAAGTA
ACT--GAAGAATCACAAAAGAAGTGAAAATAGTC--------------------------
------------------TGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACCCC-TGCTAGCCAGAGAACAA-CC
CCC-TTTGACTGTAATCTTCCACTACCCACCCA-AATCTTATAA-----------AACA-
GCCCTGCCC-C--TATCTCCCTTCGCTGACTCTCTTTTCAGACTCAGCCTGCCTGCACCC
AGGTG-------A-TTCAAAAGCTTTATTGCTCACACAAAGCCTG--TCT--GGTGGTCT
CATCACACGG-------------------
>LTR7o_chr7_124008265_124008713_h3k27ac_EncodeRepressed_SOLO_7old____chr7_124008265124008713____1397
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCATG
TATACATCCAGATGGC------------------------------------CTGAAGTA
ACT--GAAGAATCACAAAAGAAGTGAAAATGGCC--------------------------
------------------TGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTTCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCGC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCTCCCC-TGCCTGCCAGAGAACAA-CC
CCC-TTTGACTGTAATTTTCCACTACCCACTCA-AATCTTATAA-----------AACG-
GCCCCACCT-C--TATCTCCCTTCGCTGACTCTCTTTTTGGACTGAGCCTGCCTGCACCC
AGGTG-------A-TTAAAAAGCGTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACGCGAGTG-----A----
>LTR7d1_chr6_160228651160234322_2495_ZNF534_KAP1_k27ac_EncodeRepressed_GRO2of7__chr6_160228651160229043____1391
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGGC---------------------------------------------CTGCACG
TATATATCCAGATGGC------------------------------------CTGAAGTA
ACT--GAAGAATCACAAAAGAAGTGAAAATGGCC--------------------------
------------------TGTTCCTGACTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCGTCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------TC-CCCCACCCC-TGCCCACCAGAGAACAA-CC
CCC-TTTGACTGTAATTTTCCATTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C--TATCTCCCTTCGATGACTGTCTTTTTGGACTCAGACCTCCTGCACCC
AGGTG-------A-ATAAACAGCCTCGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACAC---------------
>LTR7d1_chr1_89181108_89181507_EncodeRepressed_SOLO_C_7old___chr1_8918110889181507___1397
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCATG
TATACGTCCAGATGGC------------------------------------CTGAAGCA
AGT--GAAGAATCACAAAAGAAGTGAAAATGGCC--------------------------
------------------TGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------AAG----CAACTTGTG--------------
---------------------------AC-ACCCACCTC-TGCCCGCCAGAGAACAA-CC
CCC-TTTGACTGTAATTTTCCTTTACCAACCCA-AATCCTGTAA-----------AATG-
GTCCCAACC-C--TATCTCCCTTCACTGACTGTCTTTTCGGACTCAGCCAGCCTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACACGAGTG----------
>LTR7d1_chr5_99229819_99230194_EncodeTxn_SOLO_7old____chr5_9922981999230194____1367
-GTCAGGCCTCTGAGCCCAAA-----------------------C---------------
-----------------------------------------------------CTGCACC
TATTCATCCAGATAGC------------------------------------CTGAAGTA
ACT--GAAGAATCACAAAAAAAGTGAAAATGGCC--------------------------
-------------------GTTC-----TTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCT---GG--------------
----CTCATTCTGGCTCAA--AAGCTCCCTCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GCG----CACCTTGTG--------------
---------------------------AC-CCCCACCCC-TGCCAGTCAGAGAACAA-CC
CCC-TTTGAC--TAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACG-
GCTCCACCC-C--TATCTCCCTTTGCTGATTCTATTTTCAGACTCAGCCCGCCTGCACCC
AGGTG-------A-TTAAAA-GCTTTATTGATCACACAAAGCCTG--TTT--GGTGGTCT
CTTCCCACAGACGTGAGTG----------
>LTR7o_chr8_105838506_105838896_weakenh_SOLO_C_7old___chr8_105838506105838896___1387
TGTCAGGCCTCTGAGCCCAAA-----------------------C---------------
-----------------------------------------------------CTGCATG
TAT--ATCCAGATGGC------------------------------------CTGAAGCA
AGT--GAAGAATCAC---AGAAGTGAAAATGGCC--------------------------
-------------------GTCC-----TTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTTG--------------
----CTCATCTTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACGTTGTG--------------
---------------------------AC-CCCCACCTC-TGCCAGTCAGAGAACAA-CC
CCC-TTTGACTGTAATTTTGCACTACCTACCCA-AATCTTATAA-----------AACG-
GCCCCACCC-C--TATCTCCCTTTGCTGACTCTCTTTTCAGACTCAGCCCACCTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACGT---------------
>LTR7o_chr8_134970289_134970667_EncodeRepressed_SOLO_C_7old___chr8_134970289134970667___1348
TGTCAGGCCTCTGAGCCCAAG-----------------------C---------------
-----------------------------------------------------CTGCACG
AATACATCCAGATGGC------------------------------------CTGAAGCA
AGT--GAAGAATCTCAAAAGAAGTGAAAATGGCC--------------------------
-------------------GTTC-----TTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCC-----------------
-----------TGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACCCC-TGCCAGCCAGAGAACAA-CC
CCC-TTTGACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AATG-
GCCCCACCC-C--TATTTCCCTTCACTGACTCTGTTTTCGGACTCAGCCCACTGGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTT--------------------------
>LTR7o_chr13_31607334_31607706_EncodeTxn_SOLO_C_7old___chr13_3160733431607706___1363
TGTCGGGCCTCTGAGCCCAAG-----------------------C---------------
-----------------------------------------------------CTGCAAG
TATTCATCCAGATGGC------------------------------------CTGAAGCA
AGT--GAAGAATCACAAAAGAAGTGAAAATGGCT--------------------------
-------------------GTTC-----TTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCC-----------------
-----------TGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACCCC-TGCCAGCCGGAGAACAA-CC
CCC-TTTGACTGTAATTTTCCACTATCTACCCA-AATCCTATAA-----------AAGA-
GCCCCACCC-C---ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGATCT
CTTCACACGGACTCGTTTG----------
>LTR7o_chrX_103761159_103767306_2868_transcribed_ZNF534_k4me3_enh_44108_wanghigh_GRO1of7_C_7old___chrX_103766932103767306___1364
TGTTAGGCCTCTGAGCCCAAG-----------------------C---------------
-----------------------------------------------------CTGCACG
TATACGTCCAGATGGC------------------------------------CTGAAGCA
AGT--GAAGAATCACAAAAGAAGTGAAAATGGCT--------------------------
-------------------GTTC-----TTAACTGGT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCC-----------------
-----------TGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACCCC-AGCCAGCCAGAGAACAA-CC
CCC-TTTGACTGTAATTTTCCACTACCTACCCA-AATCCTGTAA-----------AACA-
GCCCCACCC-C---GTCTCCCTTCTCTGACTCTCTTTTCGGACACAGCCCGCCGGCAGCC
AGGTG-------A-TTAGAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCATACAGACGCATCTG----------
>LTR7o_chr3_98191088_98196791_2148_ZNF534_KAP1_EncodeRepressed_GRO3of7_7old____chr3_9819108898191462____1364
-GTCAGGCCTCTCAGCCCAAG-----------------------C---------------
-----------------------------------------------------CTGCACA
TATTCATCCAGATGGC------------------------------------CTGAAGCA
AGT--GAAGAATGACAAATGAAGTGAAAATGGCC--------------------------
-------------------GTTC-----TTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCC-----------------
-----------TGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACCCC-TGCCAGACAGAGAACAA-CC
CCC-TTTGACTGTAATTTTCCACTACCTACCCA-AATCCTACAA-----------AACA-
GCCCCACCC-T---ATCTCCCTTTGCTAACTCTCTTTTCCGACTCAGCCCGCCTGTACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTC--TTT--GGTGGTCT
CTTCACACAGACCCATGTG-----A----
>LTR7o_chr8_126284282_126284656_h3k27ac_EncodeTxn_SOLO_7old____chr8_126284282126284656____1363
-GTCAGGCCTTTGAGCCCAAG-----------------------C---------------
-----------------------------------------------------CTGCACC
TATGCATCCAGATGGC------------------------------------CTGAAGCA
AGT--GAAAAATCACAAAAGAAGTGAAAATGGCC--------------------------
-------------------GTTC-----TTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCC-----------------
-----------TGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACCCC-TGCCAGCCAGAGAACGA-CC
CCC-TTTGACTGTAATTTTCCACTACCTACCCA-AATGCTATAA-----------AACA-
GCCCCACCC-C---ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
ATGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACGCGTGTG-----A----
>LTR7o_chr15_95043308_95043756_h3k27ac_enh_SOLO_NANOG_7old____chr15_9504330895043756____1448
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCAATCGTATCC
CCTGTGAC---------------------------------------------CTGCACA
TATACACCTAGATGGC------------------------------------CCGCAGCA
AGT--GAAGAATCACAAAAGAAGTGAAAATGGCT--------------------------
-------------------GTTCATGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
AAT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACT--------TT--GTGAAATTCCTTCTCTTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCAAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCTACCCC-TGCCAGCCAGAGAACAA-CC
CCC-TTTGACTGTAGTTTTCCACTATCTACCCA-AATCTTATAA-----------GATG-
GCCCCACCC-C--TATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
TTTCACACGGATGCGCGTG-----A----
>LTR7o_chr8_81982945_81983319_EncodeRepressed_SOLO_7old____chr8_8198294581983319____1364
-GTCAGGCCTCTGACCCCAAG-----------------------C---------------
-----------------------------------------------------CTGCAAG
TATTCATCTAGATGGC------------------------------------CCGAAGCA
AGT--GAAGCATCACAAAAGAAGTGAAAATGTCC--------------------------
-------------------GTTCTTGCC--------------------------------
------------------------------------------------------------
------------------------------------------------------------
--T---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTC--------------------
--------TCCTGGCTCAA--AAGCTCCCCCTC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACCCC-TGCCAGCCAGAGAACAA-CC
CCC-TTTGACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACA-
GCCCCACCC-C--TATCTCCCTTCATTGACTCTCTTTTCGGACTAAGTCTGCCTGCACCA
ACGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGATGCACGTG-----A----
>LTR7o_chr3_124827654_124828113_h3k27ac_enh_SOLO_NANOG_44108_SMAD11_7old____chr3_124827654124828113____1445
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCGTATCC
CCTGTGAC---------------------------------------------CTGCACG
TATACATCCAGATGGC------------------------------------CCGCAGCA
AGT--GAAGAATCACAAAAGAAGTGAAAATGGCC--------------------------
-------------------GTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTCG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACCCC-TGCCAGCCAGAGAACAA-CC
CCC-TTTGACTGTAATTTTCCACTACCTACCCA-AATCTTATAA-----------AACA-
GCACCCCCC-C--AACCTCCCTTCGCTGACTCTCTTTTCAGACTCAGCCTGCCTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGTTCGCGCAAAGCCTG--TTT--GGTGGTCT
CTTCACAGGGACGTGCGTG-----A----
>LTR7o_chr7_42673708_42674144_EncodeTxn_SOLO_C_7old___chr7_4267370842674144___1436
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATGGTATCC
CTTGTGAC---------------------------------------------GTGCACG
TATACGTCCAGATGGC------------------------------------CCAAAGCA
AGT--AAAGAATCACAAAAGAAGTGAAAATGGCC--------------------------
-------------------GTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCG----------A--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTATG--------------
---------------------------AC-CCCCACCCC-TGCCAGCCAGAGAACAA-CC
CCC-TTTGACTATAATTTTCCACTACCTACCCA-AATCTTATAA-----------GACG-
ACCCCTCCC-C--TATCTCCCTTCACTGACTC-CGTTTCGGACTCAGCCCGCCTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACA-AGCCTG--TTT--GGTGGTCT
CTTCACATGGACGTGAGTG----------
>LTR7o_chr7_141578076_141584442_1753_ZNF534_KAP1_k27ac_enh_GRO1of7_C_7old___chr7_141584043141584442___1397
TGTCAGGCTTCTGAGCCCAAG-----------------------CTAAGCCATCGTATCC
CCTGTGAC---------------------------------------------CTGCATG
TATACGTCCAGATGGC------------------------------------CCGAAGCA
AGT--GAAGAATCACAAAAAAAGTGAAAATGGCC--------------------------
-------------------GTCCCTGCC--------T-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCTTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAA----CACCTTGTG--------------
---------------------------AC-CCTCACCCC-TGCCAGCCAGAGAACAA-CC
CCC-TTTGACTATAATTTTCCACTACCTACCCA-AATCTTATAA-----------AATG-
GCCCCACCC-T--TATCTCCCTTCGCTGACTCTCTTTTCGGACTCGGCCCACCTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACACGAGTG----------
>LTR7o_chr5_126684817_126685239_h3k27ac_weakenh_SOLO_NANOG_7old____chr5_126684817126685239____1421
-GTCAGGCCTCTGAACCCAAG-----------------------CTAAGCCATGGTATCC
CCTGTGAC---------------------------------------------CTGCACG
TATAAGTCCAGATGGC------------------------------------CCGAAGCA
AGT--GAAGAATC-CAAAAGAAGTGAAAATGGCT--------------------------
-------------------GTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCCCCCC-TGCCTGCCAGAGAACAA-CC
CCC-TTTGACTGTAATTTTCCACTACCCACCCA-AATCTTACAA-----------AACG-
GCCCCACCC-C--TATCTCCGTTCGCTGACTCT--------------------------C
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--TGTGGTCT
CTTCACACGGACGCAAGTG-----A----
>LTR7o_chr3_167422393_167431175_5206_ZNF534_KAP1_k4me3_EncodeTxn_7old____chr3_167422393167422843____1447
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCGTATCC
CCTGTGAC---------------------------------------------CTGCATG
TACATGTCCAGATGGC------------------------------------CTGAAGCA
AGT--GAAGA-TCACAAAAGGAGTGAAAATGGCC--------------------------
-------------------GTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCGC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AT-CCCCACCCC-TGCCAGCCAGAGAATAA-CC
CCC-TTTGACTGTAATTTTCCACTACCTACACA-AATCTTACAA-----------AACG-
GCCCCACCC-A--TATCTCCCTTTGCTGACTCTGTTTTCGGACTTAGCCTGCCTGCACCC
AGGAG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGATGTGAGTG-----A----
>LTR7o_chr13_54494757_54495204_EncodeRepressed_SOLO_7old____chr13_5449475754495204____1446
-GTCAGGCCTCCGAGCCCAAA-----------------------CTAAGCCATCGTATCC
CCTGTGAC---------------------------------------------CTGCACG
TATATGTCCAGATGGC------------------------------------CCGAAGCA
AGT--GAAGAATCACAAGAGAAGTGAAAATGGCC--------------------------
-------------------GTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----TTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACCCC-TGCCTGCCAGAGAGCAA-CC
CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATATCATAA-----------AACA-
GCCCCACCC-C--A-TCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCAGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--AGTGGTCT
CTTCACACAGACTCGAGTG-----A----
>LTR7o_chr3_191927319_191927716_h3k27ac_TSS_SOLO_SMAD11_7old____chr3_191927319191927716____1397
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCTATCATATCC
CCTGTGAC---------------------------------------------CTGCATG
TATATGTCGAGATGGC------------------------------------CCGAAGCA
AGT--GAAGAATCACAAAAGAAGTGAAAATGGCC--------------------------
-------------------G--------TTAACTGAA-----------------------
---G--------------------------------------------------------
----------------------------------------------------------CC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACCCC-TGCCAGCCAGAGAACAA-CC
CCC-TTTGACTGTAATTTTCCATTACCTACCCA-AATCCTATAA-----------AACA-
GCCCCACCC-C--TCTCTCCCTTCACTGACTCTCTTTTCAGACTCAGCCCACCTGCACCC
AGGTA-------A-TTGAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGATGCGCGTG-----A----
>LTR7o_chr4_30148804_30149243_h3k27ac_enh_SOLO_NANOG_C_7old___chr4_3014880430149243___1439
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCGTATAC
CCTGTGAC---------------------------------------------CTGCACA
TATACGTCCAGATAAC------------------------------------CCAAAGCA
AGT--GAAGAATCACAAAAGAAGTGAAAATGGCC--------------------------
-------------------ATTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATC---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAA---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC--CCCGCCCC-TGCCCGCCAGAGAACAA-CC
CCC-TCTGACTGTAATTTTCCACTATCTACCCA-CATC-TATAA-----------AATG-
GCCCCACCC-C--TGTCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGCTCT
CTTCACACAGACG----------------
>LTR7o_chr3_143797445_143805925_5541_ZNF90_EncodeTxn_7old____chr3_143797445143797939____1392
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCATG
-----GACCAGATGGC------------------------------------CCAAAGCA
AGT--GAAGAATCACAAAAGAAGTGAAAATGGCC--------------------------
-------------------T--------TTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCATCCTGGCTCAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------TC-CCCCGCCCC-TGCCCACCAGAGAACAA-CC
CCC-TTTGACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AATG-
TCCCCACCC-A--TATCTCCCTTCACTGACTCTCTTTTGGGACTCAGCCCACCTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGATGCATGTG-----A----
>LTR7o_chr11_333767_334167_TSS_SOLO_NANOG_44108_C_7old___chr11_333767334167___1397
TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCACCGTATCC
CCTGTGAC---------------------------------------------CTGCACG
TATATACCCAGATGGC------------------------------------CTGAAGCA
AGT--GAAGAATCACAAAAGAAGTGAAAATGGCC--------------------------
------------------TGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCTTGG--------------
----CTCATGCTGGCTGAA--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACCCC-TGCCCGCCAGAGAACAA-CC
CCC-TTTGACTGTAATTTTCCTTTACCCACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C--TATCTCCCTTCGCTGGCTCTGTTTTTGGACTCAGCCCGCCTGCGCCC
AGGTG-------A-TTAAAAAGCTTTATTGCTGACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGGACGCG----------
>LTR7o_chr20_43382369_43382800_EncodeRepressed_SOLO_7old____chr20_4338236943382800____1385
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TATATATCCAGATGGC------------------------------------CCGAAGCA
AGT--GAAGAATCACAAAAGAAGTGAAAATGGCC--------------------------
------------------AATTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACG--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTC----------AG--AAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCCGCCAGAGAACAG-CC
CCC-TTTGAC--TAATTTTCCTTTACCCACCCA-AATCCTATAA-----------AATG-
GCCCCACCC-C--TATCTCCCTTCGCTGACTCTGTTTTCGGACTCAGCCCGCCTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCATGTG-----A----
>LTR7o_chr4_179727664_179728101_h3k27ac_EncodeTxn_SOLO_7old____chr4_179727664179728101____1385
-GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC
CCTGTGAC---------------------------------------------CTGCACG
TATGGGTCCAGATGGC------------------------------------CCAAAGCA
AGT--GAAGAATCACAAAAGAAGTGAAAATGGTC--------------------------
------------------AGTTCCTGCCTTAACCGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTACTCATGG--------------
----CTC----------AG--AAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACCCC-TGCAGGCCAGAGAACTA-CC
CTC-TTTCACAGTAATTGTCCATTACCTACCCA-AATCCTATAA-----------AATG-
GCCCCAGCC-C--TATTTCCCTTAGCTGA--CTATTTTTGGACTCAGCTCGCCTGCACCC
AGGTA-------A-TTAGAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGAGGCGCGTG-----A----
>LTR7d2_chr7_68218039_68218703_505_KAP1_EncodeRepressed_GRO5of7_GRO6of7_GRO7of7_C_7old___chr7_6821829268218703___1357
TGTCAGGCCTCCGAGCCCAAG-----------------------CC--------------
------------------------------------------------------------
--TGCATCCAGATGGC------------------------------------CTAAGGCA
ACT--GAAGAACCACAAAAGAATTGAAAATGGCT--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---A--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCA-------------GAACCTCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTATG--------------
---------------------------AC-CCCCACCCC-TGCCCACCAGAGAACAA-CC
CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AGCT-
GCCCCACCC-C--TATCTCCCTTTGCTGACTCCTTTTTCGGACTCAGCCCACCTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGTTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGCACGTG-----A----
>LTR7o_chr16_19893211_19893617_EncodeTxn_SOLO_C_proto7bc___chr16_1989321119893617___1406
TGTCAGGCCTCTGAGCCCAAG-----------------------C---------------
-----------------------------------------------------CTGCACC
TATATGTCCAGATGGC------------------------------------CTGAAGCA
AGT--AAAGAATCACAAAAGAAGTGAAAATGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----C-------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCTGCCAAAGAACAA-CC
CCC-TTTGACT--AATTTTCCTTTACCTACCCA-AACCCTATAA-----------AATG-
GCCCCACCC-C--TATCTCCCTTCACTGA--CTCTTTTCGGACTCAGCCCGCCTACACCC
AGGTG-------A-TTAAAAAGTTTTACTGCTCACACAAAGCCTG--TTT--GGTGGTCT
-TTCACATGGACGTGCGTG----------
>LTR7o_chrX_99749772_99750138_EncodeTxn_SOLO_C_7old___chrX_9974977299750138___1366
TGTCAGGCCTCTGAGCCCAAG-----------------------C---------------
-----------------------------------------------------CTGCATG
TATACATCCAGATGGC------------------------------------CTGAAGTA
ACT--GAAGAATCACAAAAGAAGGGAAAATGGCT--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCA------------GAAGCTTCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCTCGCCCC-TGCCTGCCAGAGAATAA-CC
TCC-TTTGACTGTAGTTTTCCAATACCTACCCA-AATCCTATAA-----------AATG-
GCCCCACCC-C--TATCTCCCTTCACTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACGTGCGTG-----A----
>LTR7o_chr2_101251269_101251631_h3k27ac_weakenh_SOLO_SMAD11_C_7old___chr2_101251269101251631___1362
TGTCAGGCCTCTGAGCCCAAG-----------------------C---------------
-----------------------------------------------------CTGCACA
TATACATCCACATGGC------------------------------------CTGAAGTA
ACT--GAAGAATCACAAAAGAAGTGCAAATGGCT--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATCCCTTCTCCTGG--------------
----CTCA------------GAAGCTCCCCCGC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTATG--------------
---------------------------AC-CCCCGCCCC-GGCCTGCCAGAGAACAA-CC
CCC-TTTGACTGTAATTTTCCACTACCCACCCA-AATCCTATAA-----------GATG-
GCCCCACCC-C--TCTCTCACTTCCCTGA--CTCTTTTCAGACTCAGCCCGCCTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAGAGCCTG--TTT--GGTGGTCT
C--CACACGGACGCGCGTG-----A----
>LTR7o_chr2_51263033_51263398_weakenh_SOLO_C_7old___chr2_5126303351263398___1365
TGTCAGGCCTCTGAGCCCAAG-----------------------C---------------
-----------------------------------------------------CTGCACT
TATACATCCAGATGTC------------------------------------CTGAAGTA
ACT--GAAGAATCAGGAAAGAAGTGAAAATGGCT--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCA------------GAAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTATG--------------
---------------------------AC-CCTCGCCCC-TGCTTGCAAAAGAACAA-CC
CCC-TTTGACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACA-
GCCCCACCC-C---ATCTCCCTTCACTGACTCTCTTTTTGGACTCATCCCGCCTGCACCC
AGGTG-------A-TTAAAAAGCTTTACTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGCACGTG-----A----
>LTR7o_chr8_136618849_136619213_EncodeRepressed_SOLO_C_7old___chr8_136618849136619213___1364
TGTCAGGCCTCTGAGCCCAAG-----------------------C---------------
-----------------------------------------------------CTGCACA
TATACATCCAGATGGC------------------------------------CTGAAGCA
ACT--GAAGAATGACAAAAGAAGTGAAAATGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCTTTCTCCTGG--------------
----CTCA------------GAAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCTCCCC-TGCCTGCCAGAGAACAA-CC
-CC-TTTGACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C--TATCTCCCTTCCCTGACTCTCTTTTCAGACTCAGCCTGCCTGCACCC
AGGTG-------A-TTAAAAAACTTTACTGATCACACAAAGCCTG--TTT--GGTGGTCT
TTTCACACAGACACGCGTG-----A----
>LTR7o_chr6_63950227_63956522_3530_ZNF534_EncodeRepressed_GRO4of7_7old____chr6_6395022763950593____1364
-GTCAGGCTTCTGGGCCCAAG-----------------------C---------------
-----------------------------------------------------CTGCACA
CAGATGTCCAGATGGC------------------------------------TTGAAGTA
TCT--GAAGAATCACAAAAGAAGTGAAAATGTCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCA------------GAAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CATGTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCTGCCAGAGAACAA-CC
CCC-TTTGACTATAATTTTCTATTACCTACCCA-AATCCTATAA-----------AACA-
GCCCCACCC-C--TATCTCCCTTCTCTGACTCTCTTTTCAGACTCAGCCCACCTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGCGCGTG-----A----
>LTR7o_chr8_49419793_49426326_2414_ZNF534_EncodeRepressed_GRO4of7_7old____chr8_4941979349420159____1363
-GTCAGGTCTCTGAGCACA-----------------------------------------
-----------------------------------------------------CTGCACG
TATATATCCAGATGGC------------------------------------CTGAAGCA
AGT--GAAGAATTACAAAAGAAGTGAAAATGGCC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----GTCA------------GAAGCTTCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTATG--------------
---------------------------AT-GGCCACCCC-TGCCCGTCAGAAAGCAA-CC
CCC-TTTGACTGTAATTTTCCACTACCTACACA-AATCCTATAA-----------AATG-
GCCCCACCA-C--TATCTCCCTTCACTGA--GTCTATTTGGACTCAGCCTGCCTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACAAAAAGCCTG--TTT--GGTGTTCT
CTTCACATGGACTTGTGTG-----A----
>LTR7o_chr11_121298713_121299068_h3k27ac_weakenh_SOLO_C_7old___chr11_121298713121299068___1353
TGTCAGGCCTCTGAGCCCAAG-----------------------T---------------
-----------------------------------------------------CTGCACG
TATACATCCAGATGGC------------------------------------CTGAAGCA
ACT--GAAGAATTACAAAAGAAGTGAAAATGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTAACATTCCTTCT-CTGG--------------
----CTCA------------GAAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------A--------------CCCGCAAGAGAACAA-CT
CCC-TTTGACTATAATTTTCCACTACCTACTCA-AATCCTTCAA-----------AACT-
GCCCCACCC-C--TAACTCCTTTTGCTGA--CTCTTTTCGGACTCAGCCTGACTGCATCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGGCTG--TTT--GGTGGTCT
CTTCACATGGACGTGCGTG-----A----
>LTR7o_chr3_84187812_84193404_2464_ZNF534_EncodeTxn_GRO5of7_GRO6of7_GRO7of7_C_7old___chr3_8419303984193404___1364
TGTCAGGCCTCTGGGCCCAAG-----------------------T---------------
-----------------------------------------------------CTGCACG
TATACATCCAGATGGC------------------------------------CTGAAGTA
ACT--GAAGAATGACAAAAGAAGTGAAAATGTCC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------GC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCA------------GAAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------CC-CCCCACCCC-TGCCTGTCAGAGAACAA-CC
CCC-TTTGACTGTAATTTTCCACTACCCACCCA-AATCCTATAA-----------AACG-
GCTGCACCC-C--TATCTCCTTTCGCTGA--CTCTTTTTGGACTCAGCCCACTTGCATCC
AGGTG-------A-TTAAAAAGCTTCACTGCTCACACAAAGTCTG--TTT--GGTGGTCT
CTTCACATGGACGTGCGTG----------
>LTR7o_chrX_3808975_3809365_EncodeTxn_SOLO_7old____chrX_38089753809365____1357
-GTCAGGCCTCTGAGCCCAAG-----------------------C---------------
-----------------------------------------------------CTGCACT
TATACATCCAGATGGC------------------------------------CTGAAGTA
ACT--GAAGAATCACAAAAGAAGTGAAAAT------------------------------
-------------------GTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCA------------AAAGATCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACCCC-TGCCAGCCAGAGAACAA-CC
CCC-TTTGACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C--TGTCTCCCTTTGCTGA--CTCTTTTCAGACTCAGCCTGCCTGCACCC
AGGTG-------A-TTAAAAAGCTTTACTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGTGTGTG-----A----
>LTR7o_chr2_154520933_154521329_TSSflanking_SOLO_C_7old___chr2_154520933154521329___1372
TGTCAGGCCTCTAAGCCCAAG-----------------------C---------------
-----------------------------------------------------CTGCACG
TATATATCCAGATGGC------------------------------------CTGAAGTA
ACT--GAAGAATCACAAAAGAAGTGCAAATGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------AGC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCA------------AAAGCTCCCCAAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACCGC-TGCCAGCCAGAGAACAA-TC
CCC-TTTGACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AATG-
GCCACACCC-C--TATCTTCCTTCGCTGA--CTCTTTTTGGACTCAGCCTGCCTGCACCC
AGGTA-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGATCT
CTTCACATGGACGCACGTG----------
>LTR7o_chr19_35067753_35068119_h3k27ac_TSS_SOLO_C_7old___chr19_3506775335068119___1366
TGTCAGGCCTCTGAGCCCAAG-----------------------C---------------
-----------------------------------------------------CTGCATG
TATACATCCAGATGGC------------------------------------CTGAAGTA
ACT--GAAGAATCACAAAAGAAGTGAAAATGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCA------------GAAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACCCC-TGCCCGCCAGAGAACAA-AC
CCC-TTTGACTGTAATTTTCCACTACCTATCCA-AATCCCATAA-----------AACG-
GCCCCACCC-C--TATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC
AGGTG-------A-TTAGAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGATGCGCGTG-----A----
>LTR7o_chr6_78091529_78091959_weakenh_SOLO_7old____chr6_7809152978091959____1362
-GTCAGGCCTATGAGCCCAAG-----------------------C---------------
-----------------------------------------------------CTGCATT
TATATATCCAGATGGC------------------------------------CTGAAGCA
AGT--GAAGAATCACAAAAGAAGTGAAAATGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCA------------GAAGTTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCCGCAAGAGAACAA-CC
CCC-TTTGACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACG-
GCCACACCC-C--TATCTCTCTTCACTGA--CTCTTTTCGGACTCAGCCGGCCTGTACCC
AGGTG-------A-TTAGAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTAT
CTTCACATGGATGCATGTG-----A----
>LTR7o_chr10_64506820_64507214_weakenh_SOLO_7old____chr10_6450682064507214____1366
-GTCAGGCCTCTGAGCCCAAG-----------------------C---------------
-----------------------------------------------------CTGCATG
TATACATCCAGATGGC------------------------------------CTGAAGCA
AGT--GAAGAATCACAAAAGAAGTGAAAATGGCC--------------------------
------------------GGTTCCTGCCTTAACTAAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCA------------GAAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTATG--------------
---------------------------AC-CCCCACCCC-TGCCCACCAGAGAACAA-CC
CCC-TTTGACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C--TGTCTCCTTTCCCAGACTCTCTTTTCGGACTCAGCCAGCCTGCACCC
AGGTG-------A-TTAGAAAGCTGTATTGCTCACACAAAGCCTG--TTT--GTTGGTCT
CTTCACACGGATGCATGTG-----A----
>LTR7o_chr4_186241956186247584_1674_ZNF534_KAP1_k4me3_TSS_NANOG_SMAD11_wanghigh_chimeric_GRO2of7__chr4_186247217186247584___1366
TGTCAGGCCTCTGGGCCCAAG-----------------------C---------------
-----------------------------------------------------CTACATG
CATACATCCAGATGGC------------------------------------CTGAAGTA
ACT--GAAGAATGACAAAAGAAGTGAAAATGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
GTT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCA------------GAAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACCCC-TGCCCGCCAGAGAACAA-CC
CCC-TTTGACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACG-
TCCCCACCC-C--TATCTCCCTTCACTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC
AGGTG-------A-TTAAAAAGCTTTCTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCGCATGGACACACGTG-----A----
>LTR7o_chr12_61587106_61592931_1650_ZNF534_KAP1_EncodeRepressed_GRO4of7_7old____chr12_6158710661587480____1374
-GTCAGGCCTCTGGTCCCAAG-----------------------C---------------
-----------------------------------------------------CTGCACA
TATACATCCAGATGGC------------------------------------CTGAAGTA
ACT--GAAGAATGACAAAAGAAGTGAAAATGGTC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATACCTTCTCCTGG--------------
----CTCA------------AAAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACACC-TGCCAGCCAGAGAATAA-CT
CCC-TTTTACTATACTTTTCCACTACCTACCCA-AATCCTATAA-----------AACG-
GTCTCACCC-C--TATCTCCCTTTGCTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC
AGGTG-------A-TTAAAAAGGTTTATTGCTCACACAAAGCCTG--TTT--GGTGATCT
CTTCACACGGATGCAGGTG-----A----
>LTR7o_chr22_35227631_35228005_weakenh_SOLO_7old____chr22_3522763135228005____1364
-GTCAGGCCTCTGGGCCCAAG-----------------------A---------------
-----------------------------------------------------CTGCACA
TACATATCCAGATGGC------------------------------------CTGAAGTA
ACT--GAAGAATGACAAAAGAAGTGAAAATGGCC--------------------------
------------------TATACCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCA------------AAAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACCCC-TGCCAGACAGAGAACAA-CC
CCC-TTTGACTGTAATTTTCCACTACCTACTCC-ACTCCTATAA-----------AACG-
GCCCCACCC-C--TATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACAGGGACACACATG-----A----
>LTR7o_chr15_35245893_35246256_weakenh_SOLO_SMAD11_7old____chr15_3524589335246256____1363
-GTCAGGCCTCTGGGCCCAAG-----------------------C---------------
-----------------------------------------------------CTGCACG
TATACATCCAGATGGC------------------------------------CTGAAGTA
ACT--GAAGAATGACAAAAGAAGTGAAAATGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCA------------GAAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCTGCCCC-TGCCAGCCAGAGAACAA--C
CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C--TATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTG-------A-TTAAAAAGCTTTACTGCTCACACAAAGCGTG--TTT--GGTGGGCT
CTTCACAGGGACGCACGTG-----A----
>LTR7o_chr14_9355939293564970_5509_1_EncodeTxn_GRO2of7__chr14_9356457493564970___1396
TGTCAAGCCTCTGAGCCTAAG-----------------------C---------------
-----------------------------------------------------CTGCACG
TGTACATCCAGATGGC------------------------------------CTGAAGTA
ATT--GGA-AATTAAAAAAGAAGTGAAAATGGCC--------------------------
------------------GGCTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCA------------AAAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACCCC-TGCCAGCCAGAGAACAA-CC
TCC-TTTGACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C--TATCTCCCTTCGCTGACTCTCTTTCCAGACTCAGCCCGCCTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGCGTGTG----------
>LTR7o_chr13_48004599_48005007_h3k27ac_EncodeTxn_SOLO_C_7old___chr13_4800459948005007___1364
TGTCAGGCCTCTGAGCCCAAG-----------------------T---------------
-----------------------------------------------------CTGCACG
TATTCATCCAGATGGC------------------------------------CTGAAGTA
ACT--GAAGATTCACAAAAGAAGTGAAAATGGCC--------------------------
------------------TGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCA------------GAACCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACCCC-AGCCTGCCAGAGAACAA-CA
CCC-TTTGACTGTAATTTTGCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C--TATTTCCCTTTGCTGACTCTCTTTTCCGACTCAGCCCGCCTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGTGAG--TTT--GGTGGTCT
CTTCACATGGACGCGTGTG----------
>LTR7o_chrY_11896309_11896674_SOLO_C_7old___chrY_1189630911896674___1364
TGTCAGGCCTCTGAGCCCAAG-----------------------C---------------
-----------------------------------------------------CTGCACT
TATACAACCAGGTGGC------------------------------------CTGAAGCA
AGT--GAAGAATCACAAAAGAGATGAAAATGGCC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAACTCCTTCTCCTGG--------------
----TTCA------------GAGGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTGGTG--------------
---------------------------AC-CCCCACCCC-TGCCTGCCAGAGAACAA-CA
CCC-TTTGACTGTAATTTTGCATTACCTACCCA-AATCCTATAA-----------AACA-
GCCCCACCC-C---ATCTCCCTTCACTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC
AGGTG-------G-TTAAAAAGCTTTATTGCTAACACAAAGTCTG--TTT--GGTGGTCT
CTTCACATGGATGCACATG-----A----
>LTR7o_chrX_34229994_34230359_EncodeTxn_SOLO_C_7old___chrX_3422999434230359___1364
TGTCAGGCCTCTGAGCCCAAG-----------------------C---------------
-----------------------------------------------------CTGCACC
TACACATCCAGATGGC------------------------------------CTGAAGCA
AGT--GAAGAATCACAAAAGAAGTGAAAATGGCC--------------------------
------------------GGTTCCTGCCTTAACCGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCA------------TAAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACCCC-TGCC-GCCAGAGAACAA-CC
CCC-TTTGACTGTAATTTTCCATTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCT-C--TATCTCCCTTCGTTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC
AGGTG-------A-TTAAAAAGCTTTCTTGCTCACACAAAGCCAG--TTT--GGTGGTCT
CTTCACATGGACGCACGTG-----A----
>LTR7C_chr10_Sltr_147__chr10_5582326855823691_+_
-ATCAGGCCTCTGAGCCCAAG-----------------------C---------------
-----------------------------------------------------CTGCACG
TATATATCCAGATGGC------------------------------------CTGAAGCA
ACT--GAAGAATCACAAAAGAAGTGAAAATGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------CCT--------TT--GTGAAATTCCTTCTCCT-G--------------
----CTCA------------GAAGCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------AAG----CACCTTGTA--------------
---------------------------AC-CCCTGCCCC-TGCCCGCAAGAGAAAAA-CC
CCT-TTTGACTGTAATTTTCCACTACCCACCCA-AATCCTATAA-----------AACT-
GCCACACCC-C--TATCTCC-CTTGCTGACTCTCTTTTCGGACTCAACCCTCCTGCAGCC
GGGTG-------A-TTAAAAAGCTTTATTGGTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACCCGCATG-----ACA--
>LTR7o_chr3_168833139_168833877_EncodeTxn_SOLO_C_7old___chr3_168833506168833877___1316
TGTCAGGCCTCTGAGCCCAAG-----------------------C---------------
-----------------------------------------------------CTGCACG
TATACACCCAGATGGC------------------------------------CTGAAGCA
ACT--GAAGAATCACAGAAGAAGTGAAAATGGCC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------CCT--------TG--GTGAAATTCCTTCTCTC-G--------------
----CTCA------------GAAGCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------GAG----CACCTTGTG--------------
---------------------------AC-CCCTGCCCC-TGCCCGCAAGAGAAAAA-CC
CCC-TTTGACTGTAATTTTCCACTACTCACCCA-AATCCTGTAA-----------AACT-
GCCCCACCC-C--TATCTTC-CTTGCTGGCTCTCTTTTCAGCCTCAGCCCACCTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTG------------------------------
-----------------------------
>LTR7o_chr1_115509141_115515447_2564_1_EncodeTxn_GRO4of7_C_7old___chr1_115515029115515447___1363
TGTCAGGCCTCTGAGCCCAAG-----------------------T---------------
-----------------------------------------------------CTGCACG
TATACATCCAGATGGT------------------------------------GTGAAGCC
ACT--GAAGAATCACAAAAGAAGTGAAAATGGCT--------------------------
------------------GGTTTCTGCGTTAACCGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACT--------TT--GTGAAATTCCTTTTCTG-G--------------
----CTCA------------GAAACTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------CAG----TACCTTGTG--------------
---------------------------AC-CCCTGCCCC-TGCCTGCAAGAGAAAAA-CC
CCC-TTTGACTGTAATTTTCCACTACCCACCCA-AATCCTATAA-----------AACT-
GCCCCACCC-C--TATCTCC-CTTGCTGACTCTCTTTTTGGACTCAGCCCACCTGCACCC
AGGTG-------A-TTAAAAAGGTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACTTGGACACATGTG-----AC---
>LTR7o_chr19_20359172_20359555_h3k27ac_EncodeRepressed_SOLO_7old____chr19_2035917220359555____1383
--TCAGGCCTCTGAGCCCAAG-----------------------CT--------------
--------AAGTCATTGTATCCCCTGTGAT-----------------------TTGCACG
TATACATCCAGATGGC------------------------------------CTGAAGCA
AGT--GAAGAATCACAAAAGA---GAAAATGGCC--------------------------
------------------GGTTCCTGCCTTAACTGGT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCTTCG--------------
----TTCA------------GAGGCTTCCCAAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTT--------------
---------------------------AC-CCCCGCCCC-TGCCCACAAGAGAAAAA-CC
CCC-TTTGACTGTAATTTTCCACTACCCACCCA-AATCCTATAA-----------AATG-
GCCCCACCC-C--TATCTCCTTTTGCTGACTCCATTTTCAGACGCAGCCCACCTGAACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGCATGTG-----A----
>LTR7o_chrX_116924988_116925422_EncodeRepressed_SOLO_C_proto7bc___chrX_116924988116925422___1433
TGTCAGGCCTCTGAGCCCACG-----------------------CT--------------
--------AAGTCATCATATCCCTTGTGAC-----------------------CTGCACA
AATACATCCAGATGGC------------------------------------CTGAAGCA
AGT--GAAGAATCACAAAAGAAGTGAAAATGGCT--------------------------
------------------GGTTCCCGCCTTAACTGGT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTATCCTGG--------------
----CTCA------------GAAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GTG----CACCCTGTG--------------
---------------------------AC-CCCCACCCC-TGCCTGCAGGAGAAAAA-CC
CCC-TTTGACTGTAATTTTCCACTACCCACCCA-AAGCCTATAA-----------AATG-
GCCACAACC-C--TATCTCCCTTTACTGACACTCTTTTCATACTCATCCCACCTGCACCG
AGGTG-------A-TTAAAAAGCTTTATTGCTCACCCAAAGCCTG--TTT--CGTGGTCT
CTTCACAGGGACATGTGTG-----AC---
>LTR7o_chr17_60384972_60385404_h3k27ac_enh_SOLO_44108_SMAD11_proto7bc____chr17_6038497260385404____1365
-GTCAGGCCTCTGAGCCCAAG---------------------------------------
-----------------------------C-----------------------CTGCACA
-ATACATTCAGATGGC------------------------------------CTGAAGCA
ACT--GAAGAATCACAAAAGAAGTGAAAATGGCA--------------------------
------------------GGTTCCTGCCTTAACCGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACT--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCA------------GAAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GGG----CACCTCGTG--------------
---------------------------AC-CCCCGCCCC-TGCCTGCAAGAGAAAAA-CC
CCC-TTTGACTGTAATTTTCCACTACCCACCCA-AATCCTATAA-----------AACA-
GCCCCATCC-C--TATCTCCCTTCGCTGACTTTCTTTTTGGACTCAGCCCGCCTGCACCC
AGGTG-------A-TTAAAAACCTTCATTGCTCACACAAAGTCTG--TTT--GGTGGTCT
CTTCACATGGACGCGCATG-----ACA--
>LTR7o_chrX_149682989_149683399_h3k27ac_EncodeTxn_SOLO_proto7bc____chrX_149682989149683399____1366
-GTCAGGCCTCTGAGCCCAAG---------------------------------------
-----------------------------C-----------------------CTGCACA
TATACATTCAGATGGC------------------------------------CTAAAGCA
AGT--GAAGAATCACAAAAGAAGTGAAAATGGCT--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCA------------GAAGCTGCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCCTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCTGCAAGAGAAAAC-CC
CCC-TTTGACTGTAATTTTCCACTACCCACCAA-AATCCTATAA-----------AACT-
GCCCCACCC-C--TATCTCCCTTCGCTTACTCTCTTTTTGGAGTCAGCCCGCCTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
TTTCACATGGATACGCGTG-----ACA--
>LTR7o_chr10_26352429_26352861_EncodeRepressed_SOLO_7old____chr10_2635242926352861____1432
-GTCAGGCCTCTGAGCCCAAG-----------------------CT--------------
--------AAGCCATCATATTCCCTGTGAC-----------------------CTGCACG
TATACATCCAGATGGC------------------------------------CTGAAGCA
ACT--GAAGACTCACAAAAGAAGTGAAAATGGCT--------------------------
------------------GATTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTTCTGG--------------
----CTCA------------GAAGCTCCCCAAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTGGTG--------------
---------------------------AC-CCCCGCCCC-TGCCCACAAGAGAAAAA-CC
CCC-TTTGACTGTAATTTTCCACTACCCACCCA-AATCCTATAA-----------AATT-
GCCCCACCC-C--TATCTTCCTT-GCTGACTCTCTTTTTGGACTCAGCCTGCCTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTTATACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGCACATG-----ACA--
>LTR7o_chr7_109641708_109647640_1648_ZNF534_EncodeTxn_GRO1of7_C_proto7bc___chr7_109647164109647640___1432
TGTCAGGCCTCTGAGCCCAAG-----------------------CT--------------
--------AAACCATCATATCCCCTGTGAC-----------------------CTGCACG
TACACATCCAGATGGC------------------------------------CTGAAGCA
ACT--GAAGAATCGCAAAAGAAGTGATAATGGCT--------------------------
------------------GGTGTCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGA--------------
----CTCA------------GAAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------AAG----CACCTTGTG--------------
---------------------------AC-CCCTGCCCC-TCCCCACAAGAGAACAA-CC
CCC-TTTGACTGTAATTTTCCACTACCCACCCA-AATCCTATAA-----------AATG-
GCCCCATAC-C--TGTCTCCCTTTGCTGACTCTCTTTTTGGACTT-GCTCGCCTGCACCC
AAGTA-------T-TTAAAAAGCTTTTTTGCTCATACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACATGTGTG-----AC---
>LTR7o_chrX_67985334_67985767_EncodeRepressed_SOLO_C_7old___chrX_6798533467985767___1366
TGTCAGGCCTCTGAGCCCAAG-----------------------C---------------
-----------------------------------------------------TTGCAGG
TATACATCCAGATGGC------------------------------------CTGAAGCA
ACT--GAAGGATCACAAAAGAAGTGAAAATAGCC--------------------------
------------------ATTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ACT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACA--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCA------------GAAGCTCCCCAAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCTGCCCC-TGCCCACAAGAGAACAA-CC
CCC-TTTGAGTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C--TATCTCCCTTCGCTGACTCCTTTTTCGAACACAGCCTGCCTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTGACACAAAGCCTC--TTT--GGTGGTCT
CTTCACATGGACGTCTGTG-----AC---
>LTR7o_chr11_80700042_80700400_EncodeRepressed_SOLO_KLF4_7old____chr11_8070004280700400____1349
-GTCAGGCCTCTGAGCCCAAG-----------------------C---------------
-----------------------------------------------------CTGCACG
TATACATCCAGATGGC------------------------------------CTGAGGCA
ACT--GAAGAATCATAAAAGAAGTGAAAATGGCC--------------------------
------------------TGTTCCTGTCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCA------------GAAGCTCCCCAGC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCCACAAGAGAACAA-CC
CCC-TTCGACTGTAATTTTCCACTACCCACCCA-AATCCTATAA-----------AACT-
GCCCCACCC-C---ATCTCCCTTTGCTGACTGCTTTTTTGA----------------CCC
AGGTG-------A-TTCAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGTGCGTG-----ACA--
>LTR7o_chr3_67037862_67044184_2732_ZNF534_EncodeTxn_GRO5of7_GRO6of7_GRO7of7_C_proto7bc___chr3_6704375167044184___1433
TGTCAGGCCTCTGAGCCCAAG-----------------------CT--------------
--------AAGCCATCGTATCCCCTGTGAC-----------------------CTGCACA
TATATACCCAGAAGGC------------------------------------CTGAAGCA
AGT--GAAGAATCACAAAAGAAGTGAAAATGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT--------------------------------------------CCACCATTGTGAT
TTGTTTCTGCGCCACCTTAACTGAGCGATTA-----------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CCCA------------GAAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCTGCAAGAGAAAAA-CC
CCC-TTTGACTGTAATTTTCCACTACCGACCCA-AATCCTATAA-----------AATG-
GCCCCACCC-C--TATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GATAGTCT
CTTCACACGGACGTGCATG-----AC---
>LTR7o_chr14_87253862_87254296_EncodeRepressed_SOLO_proto7bc____chr14_8725386287254296____1431
-GTCAGGCCTCTGAGCCCAAG-----------------------CT--------------
--------AAACCATCGTATGCCCTGTGAC-----------------------CTGCATA
TATATGTCCAGATGGC------------------------------------CTGAAGCA
AGT--GAAGAATCACAAAAGAAGTGAAAATGGCC--------------------------
------------------TGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT--------------------------------------------CCACCATTGTGAT
TTGTTTCTGCCCCACCTTAACTCAGCGATTA-----------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCA------------GAAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTCGTG--------------
---------------------------AC-CCCCACCCC-TGCCCACAAGAGAAAAA-CC
CCC-TTTGATTGTAATTTTCCACTACCCACCCA-AATCCTATAA-----------AATG-
GCCCCACCC-C--TATCTCCCTTTGCTGACTCTCTTTTTGGTCTCAGCCCGCCTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGTGCATG-----A----
>LTR7o_chr1_10416523_10416951_EncodeTxn_SOLO_C_proto7bc___chr1_1041652310416951___1427
TGTCAGGCCTCTGAGCCCAAG-----------------------CT--------------
--------AAACTATCATATCCCCTGTGAC-----------------------CTGCATG
TATACATCCAGATGGC------------------------------------CTGAAGCA
AGT--GAAGAATCACAAAAGAAGTGAAAATGGCT--------------------------
------------------GGTTCCTGCCTTTACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT--------------------------------------------CCACCATTGTGAT
TTGTTCCTGCCCCACCTTAACTGAGCGATTA-----------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGACATTCCTTCTCCTGG--------------
----CTCA------------GAACCTCCCCAAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCGGCCC-TGCCCGTAAGAGAAAAA-CC
CCC-TTTGACTGTAATTTTCCACTACCTGCCCA-AATCCTATAA-----------AATG-
GCCCCACCC-C--TATCTCCCTTCGCTGACTCTT----CGGACTCAACCTGCCTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
TTTCACACGGATGCGCATG----------
>LTR7o_chr19_23025568_23026001_EncodeRepressed_SOLO_C_proto7bc___chr19_2302556823026001___1433
TGTCAGGCCTCTGAGCCCAAG-----------------------CT--------------
--------AAGCCATGATATCCCCTGTGAC-----------------------CTGCAGG
AATACATGCGGATGGC------------------------------------CTGAAGCA
AGT--GAAGAATCACAAAAGAAGTGAAAATTGCT--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT--------------------------------------------CCACCATTGTGAT
TTGTTCCTGCCCCACCTTAACTGAGCCATTA-----------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATG--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCA------------GAACCTCCCTCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACCCC-TGCCTGCAAGAGAAAAA-CC
CCC-TTTGACTGTAATTTTCCACTACCCGCCCA-AATCCTTTAA-----------AACG-
GCCCCACCC-C--TATCTCCCTTCGCTGACTCTTTTTTCGGACTCAGCCCGCTTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTTACACAAAGCCTG--TTT--GGTGGTCT
CTTCACGCGGTTGCGCATG-----AC---
>LTR7o_chr12_33087850_33090857_2215_ZNF534_EncodeRepressed_GRO4of7_C_proto7bc___chr12_3309042233090857___1431
TGTTAGGCCTCTGAGCCCAAG-----------------------CT--------------
--------TAGCCATCATATCCCCTGTGAC-----------------------CTGCATG
TATACATCCAGATGGC------------------------------------CTGAAGCA
AGT--GAAGAATCACAAAAGAAGTGAAAATGGCC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
TTC--------------------------------------------CCACCATTGTGAT
TTGTTCCTGCCCCACCTTAACTGAGCGATTA-----------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------AGC--------TT--GTGAGATTCCTTCTCCTGG--------------
----CTCA------------GAACCTTCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CGCCTTGTG--------------
---------------------------AT-CCCCCCCCC-CACCTGCAAGAGAAAAA-CC
CCT-TTTGACTGTAATTTTCCACTATGCACCCA-AATCCTATAA-----------AACA-
GCCCCACCC-C--TATCTCCCTTTGCTGACTCTCTTTGCGAACTCAGCCCACCTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTTATCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCACATG----------
>LTR7o_chr1_57531052_57531483_EncodeRepressed_SOLO_proto7bc____chr1_5753105257531483____1431
-GTCAAGCCTCCGAGCCCAAG-----------------------CT--------------
--------AAGCCATCACATCCCCTGTGAC-----------------------CTGCATG
ACTACATCCAGATGGC------------------------------------CTGAAGCA
AGT--GAAGAATCACAAAAGAAGTGAAAATGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT--------------------------------------------CCACCATTGTGAT
TTGTTCCTGCCCCACCTTAACTGAGCAATTA-----------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCA------------GAAGCTCCCTCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAA----CACCTTGTG--------------
---------------------------A--CCCCTGCCC-TGCCTGCAAGAGAAAAA-CC
CAC-TTTGATTGTAATTTTCCACTACCCACCGA-AATCCTATAA-----------AACT-
GCCCCACCC-C--TATCTTCC-TTGCTGACTCTCTTTTCTGACTCAGCCCACCTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACAGGGACACACATG-----ACA--
>LTR7o_chr12_83377187_83377620_EncodeRepressed_SOLO_proto7bc____chr12_8337718783377620____1433
-GTCAGGCCTCTGAGCCCAAG-----------------------CT--------------
--------AAGCCATCGTATCCCCTGTGAC-----------------------CTGGAAG
TATACATCCAGATGGC------------------------------------CTGAAGCA
AGT--GAAGAATCACAGAAGAAGTGAAAATGGCT--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT--------------------------------------------CCACCATTGTGAT
TTGTTCCTGCCCCACCTTAACTGAGCAGTTA-----------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCA------------GAACCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCTGCAAGAGAAAAA-CC
CCC-TTTGACTGTAATTTTCCACTACCCACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C--TATCTCCCCTTGCTGACTCTCTTTTTGGACTCAGCTCACCTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--CTT--GGTGGTCT
CTTCACACAGATGCACATG-----ACA--
>LTR7o_chr3_175825245_175825677_h3k27ac_EncodeRepressed_SOLO_NANOG_C_proto7bc___chr3_175825245175825677___1432
TGTCAGGCCTCTGAGCCCAAG-----------------------CT--------------
--------AAGCCATCATATCCCCTGTGAC-----------------------CTGCATG
TATACATCCAGATGGC------------------------------------CTGCAGCA
AGT--GAAGAATCACAAAAGAAGTGAAAATGGCT--------------------------
------------------GATTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------GC
ATT--------------------------------------------CTACCATTGTGAT
TTGTTCCTGTCCCATCTTAACTGAGCAATTA-----------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCA------------GAAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCGTCCC-TGCCTGCAAGAGAAAAA-CC
CCC-TTTGACTGTAATTTTCCACTGCCCACCCA-AATCCTATAA-----------AACT-
GCCCCACCC-C--TATCTTCCG-CGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCATCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGCTCT
CTTCACAGGGACGTGTGTG-----AC---
>LTR7o_chr1_93830337_93837088_1908_KAP1_EncodeTxn_GRO5of7_GRO6of7_GRO7of7_proto7bc____chr1_9383033793830747____1410
-GTCAGGACTCTGAGCCCAAG---------------------------------------
-----------------------------C-----------------------CTGCATG
TATACATCCAGATGGC------------------------------------CTGAAGTA
ACT--GAAGAATCACAAAAGAAGTGAAAATGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT--------------------------------------------CCACCATTGTGAT
TTGTTCCCGCCCCACCTTAACTGAGCGATTA-----------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTGCTCCTGG--------------
----CTCA------------GAAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CATCTTCTG--------------
---------------------------AT-CCCCGCCCC-TGCCTCCAAGAGAAAAA-CC
CCC-TTTGACTACAATTTTCCACTACCCACCCA-AATCCTATAA-----------AATG-
GCCCCACCC-C--TATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
ATGTG-------A-CTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGTGCGTC-----ACA--
>LTR7bc_chr2_20082562_20088123_2748_ZNF534_EncodeRepressed_GRO5of7_GRO6of7_GRO7of7_proto7bc____chr2_2008256220082996____1433
-GTCAGGCCTCTGAGCCCAAG-----------------------CT--------------
--------AAGCCATCATATCCCCTGTGAC-----------------------CTGCACA
TATACGTCCAGGTGGC------------------------------------CTGAAGCA
AGT--GAAGAATCACAATAGAAGTGAAAATGGCT--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT--------------------------------------------CCATCATTGTGAT
TTGTTCCTGCCCCACCTTAACTGAGTGATTA-----------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCA------------GAACCTCCCCAAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GGG----CACCTTGTG--------------
---------------------------AC-CCCCACCCC-TGCCCGTAAGAGAAAAA-CC
CCC-TTCGACTGTAATTTTCCACTACCCACCCA-AATCCTATAA-----------AACA-
GCCCCACCC-C--TATCTCCCTTCACTGACTCTCTTTTTGGACTCAGCCTGCCTGCACCC
AGGTG-------A-CTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGCACGTC-----ACA--
>LTR7bc_chr1_233472809_233473242_EncodeTxn_SOLO_C_proto7bc___chr1_233472809233473242___1433
TGTCAGGCCTCTGAGCCCAGG-----------------------CT--------------
--------AAGCCATCATATCGCCTGTGAC-----------------------CTGCACG
TATACATCCAGACAGC------------------------------------CTGAAGCA
AGT--GAAGAATCACAAAAGAAGTGAAAATGGCC--------------------------
------------------GGTTCCTGGCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT--------------------------------------------CCACCACTGTGAT
TTGTTCCTGCCCCACCTTAACTGAGCAATTA-----------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCA------------GAACCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CGCTGTCCC-TGCCTGTAAGAGAAAAA-CC
CCC-TTTGACTGTGATTTTCCACTACCTACACA-AATCCTATAA-----------AACG-
TCCCCACCC-C--TGTCTCCCTTCACTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC
AGTTG-------A-CTAAAAAGCCTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACGCACGTG-----AC---
>LTR7bc_chr7_77339937_77345880_2355_ZNF90_KAP1_EncodeRepressed_GRO5of7_GRO6of7_GRO7of7_proto7bc____chr7_7733993777340369____1428
-GTCAGGCCTCTGAGCCCAAG-----------------------CT--------------
--------AAGCTATCATATCCCCTGTGAC-----------------------CTACACG
TATACATCCAGCTGGC------------------------------------CTGAAGGA
AGT--GAAGAATCACAAAAGAAGTGAAAATGGTC--------------------------
------------------GGTTCCTGCCTTAAATGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT--------------------------------------------CCACCATTGTGAT
TTGTTTCTGCCCCATCTTAACTGAGCGATTA-----------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCTTTCTCCTGG--------------
----CTCA------------GAAGCTCCCCGAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-ACACGCCCC-TGCCCATAAGACAA-AA-CC
CCC-TTTGACTGTAATTTTCCACTACCCACCCA-AATCCTATGA-----------AACA-
GTCCCACCC-C--TATCTCCTTTCGCTGACT--CTTTTTGGACTCAGCCCACCTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAACCCTG--TTT--GGTGGTCT
CTTCACACAGACACACGTG-----A----
>LTR7o_chrY_12534185_12534551_SOLO_proto7bc____chrY_1253418512534551____1364
-GTCAGGCCTCTGAGCCCAAG---------------------------------------
-----------------------------C-----------------------CTGCACG
TATACATCCAGATGGC------------------------------------CTGAAGCA
AGT--GAAGAATCACAAAAGAAGTGAAAATGGCC--------------------------
------------------AGTACCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCA------------GAACCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCATCCC-TGCCCACAAGAGAACAA-CC
CCT-TTTGACTGTAATTTTCCACTACCCACCCA-AATCCTATAA-----------AACA-
GCCCCACCC-C--TATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCACGTGAACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGCGGTCT
CTTCACAGAGACTCAAGTG-----A----
>LTR7o_chr8_92415773_92416204_EncodeRepressed_SOLO_proto7bc____chr8_9241577392416204____1431
-GTCAGGCCTCTGAGCCCAAG-----------------------CT--------------
--------AAGCCATCATGTCCCCTGTGAC-----------------------CTGCACG
TATACCTCCAGATGGC------------------------------------TTGAAGCA
AGT--GAAGAATCACGAAAGAAGTGAAAAAGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT--------------------------------------------CCACCATTGTGAT
TTGTTTCTGCCCCACCTTAACTGAGCGATTA-----------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTTG--------------
----CTCA------------GAAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCCGAATGAGAACAA-CC
CCG-TTTGACTATAATTTTCCACTACCCACCCA-AATCCTATGA-----------AACA-
GCCCCACCC-C--TATCTCCCTTCACTGACTCTCTTTTCAGACTCAGCCCACCGGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCAAACGGACGAGCGTG-----A----
>LTR7o_chr4_97136992_97140080_2377_KAP1_EncodeRepressed_GRO4of7_C_proto7bc___chr4_9713967297140080___1408
TGTCAGGCCTCTGAACCCAAG-----------------------CC--------------
--------A----------------------------------------------GCCCG
TATACATCCAGATGGC------------------------------------CTGAAGCA
AGT--GAGGAATCACAAACGAAGTGAAAATGGCC--------------------------
------------------GTTTCCTGCTTTAACAGAT-----------------------
---A--------------------------------------------------------
----------------------------------------------------------AC
ATT--------------------------------------------CCACCATTGTGAT
TTGTTCCTGCCCCACCTAAACTGAGTGATTA-----------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCA------------GAAGCTGCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AA-CCCTGCCAC-TGCCCGTAAGAGAACAA-CC
CCC-TTTGACTGTAATTTTCCACTACCCACCCA-AATCCTATAA-----------AGCA-
GCCCCACCC-C--TATCTCCCTTCACTGACTCTCTTTTCAGACTCAGCCTGCCTGCACCC
AGTTG-------A-TTAAAAAGCTTTATTGCTCACACGAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCATG----------
>LTR7bc_chr6_67867628_67874456_1578_KAP1_EncodeTxn_GRO5of7_GRO6of7_GRO7of7_C_proto7bc___chr6_6787400967874456___1433
TGTCAGGCCTCTGAGCCCAAG-----------------------CT--------------
--------AAGCCATCATATCCCTTGCCAC-----------------------ATGCACA
TATACATCCAGATGGC------------------------------------CTGAAGCA
AAT--GAAGAATCACAAAAGAAGTGAAAATGGCC--------------------------
------------------GGTTCATGCCTTAACTGAT-----------------------
---A--------------------------------------------------------
----------------------------------------------------------AC
ATT--------------------------------------------CCACCATTGTGAT
TTGTTCCTGCCCCACCTTAATTGAGTGATTA-----------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCA------------GAAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCTACCCC-TGCCTGCAAGAGAAAAA-TC
CCA-TTTGACTATAATTTTCCACTATCCACCCA-AATCCTATAA-----------AACG-
GCCCTACCC-C--TATCTCGCTTTGCTGACTCTCTTTTCAGACTCAGCTTGCCTGCACCC
AGGGG-------A-ATAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGGCT
CTTCACCTGGACGCACGTG-----AC---
>LTR7o_chr20_1727239_1733570_1901_1_EncodeTxn_GRO5of7_GRO6of7_GRO7of7_C_proto7bc___chr20_17331381733570___1432
TGTCAGGCCTCC-AGCCCAAG-----------------------CT--------------
--------CAGCCATCATATCCCCTGTGAC-----------------------CTGCATG
AATACATCCAGATGGC------------------------------------CTGAAGCA
AGT--GAAGAATCACAAAAGAAGTGAAAATGGCC--------------------------
------------------GGTGCCTGCCTTAATTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ACT--------------------------------------------CCACCATTGTGAT
TTATTCCTGCCCCACCTTAACTGGGTGATTA-----------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGC--------------
----CTCA------------GAAGCTCCCGCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACCCC-TGCCCACAAGAGAAAAA-CA
CCC-TTTGACTGTAATTTTCCACTACCCACCCA-AATCCTATGA-----------AATG-
GCCTCACCC-C--TATCTCCCTTTGCTGACTCTCTTTTCAGACTCAGCCTGCCTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGACTG--TTT--AGTGGTCT
CTTCACATGGATGCACGTG-----AC---
>LTR7o_chr1_169683070_169688724_2532_ZNF534_KAP1_EncodeRepressed_GRO5of7_GRO6of7_GRO7of7_proto7bc____chr1_169683070169683479____1409
-GTCAGACCTCTGAGCCCAAG---------------------------------------
-----------------------------C-----------------------CTGCAGG
TATACACCCAGATGGC------------------------------------CTGAAGCA
AGT--GAAGAATCACAAAAGAACTGAAAATGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT--------------------------------------------CCACCATTGTGAT
TTGTTCCTGCCCCACCTTGACTGAGGGATTA-----------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCCCCTGG--------------
----CTCA------------GAAGCTCCCCGAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACCTTGTG--------------
---------------------------AC-CCCCACCCC-TGCCCACAAGTGAAAAA-CC
CCC-TTTGACTGTAATTTTCCACTACCCACCCA-AATCCTATAA-----------AACA-
GCCTCACCC-C--TATCTCCCTTCGCTGACTCTCTTTTCAGACTCAACCTGCCTGCACCT
AGGTG-------A-TTCAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGAC-CATGTG-----ACA--
>LTR7o_chr2_52075646_52076077_EncodeRepressed_SOLO_proto7bc____chr2_5207564652076077____1431
-GTCAGGCCTCTGAGCCCAAG-----------------------CT--------------
--------AAGCCATCATATCCCCTGTGAC-----------------------CTGCACA
AATACATCCAGGTGGC------------------------------------CTGAAGCA
AGC--GAAGAATCACAAAAGAAGTGAAAATGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT--------------------------------------------CCGCCATTGTGAT
TTGTTCCTGCCCCACCTTAACTAAGCGATTA-----------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------A-C--------TT--GTGAAATTTCTTCTCCTGG--------------
----CTCA------------GAAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCG-CCC-TGCCCTCAAGAGCAAAA-CC
CCC-TTAGACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AATG-
GCCCCACTT-C--TATCTCCCTTCGCTGACTCTCTTTTTGGACTCAGCCTGCCCGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACACAGCCTG--TTT--GGTGGTCT
CTTCACATGGATGTGTGTG-----ACA--
>LTR7o_chr13_84578832_84579222_EncodeRepressed_SOLO_7old____chr13_8457883284579222____1387
-GTCAGGCCTCTGAGCCCAGG-----------------------CT--------------
--------AAGCCATCAAATCCCCTGTGAC-----------------------CTACACG
TATATATCCAGATGGC------------------------------------CTGAAGTA
ACT--GAAGAATCACAAAAGAAGTGAAAATGGCC--------------------------
------------------TGTTCCTGCCTTAACTGAT-----------------------
---T--------------------------------------------------------
----------------------------------------------------------AC
------------------------------------------------------------
---------------------------ATTA-----------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------C-C--------TT--GTGAAATTTCTTCTCCTGG--------------
----CTCA------------GAAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCTGACCC-TGCCCATAAGAGAAAAA-CC
CCC-TTTGACTGCAATTTTCTGCCACCTACCCA-AATCCTACAA-----------AACA-
GCCCCACCC-C--TATTTCCCTTCAGTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACGCAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGATGTGTGTG-----A----
>LTR7o_chr7_131587863_131588296_h3k27ac_weakenh_SOLO_C_proto7bc___chr7_131587863131588296___1433
TGTCAGGCCTCTGAGCCCAAG-----------------------CT--------------
--------AAGCCATCATATCTCCTGCGAC-----------------------CTGCACA
TATACATCCAGTTGGC------------------------------------CTGAAGCA
AGT--GAAGAATCACAAAAGAAGTGAAAATGACC--------------------------
------------------AGTTCCTGTCTTCACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------GC
ATT--------------------------------------------CCACCATTGTGAT
TTGTTCCTGCCGCACCTTAACTGAGCGATTA-----------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATCCCTTCTCCTGG--------------
----CTCA------------GAAGCTCGCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AT-CCCTGCCCC-TGCCCGCAAGAGAAAAA-TC
CCC-TTTGACTGTAATTTTCCTCTACCCACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C--TGTCTCCCTTCGCTGACTCTCTTTTCAGACTCAGCCCACCTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTTACACAGACACGCATG-----AC---
>LTR7o_chr5_7055005_7063741_2841_1_EncodeRepressed_GRO4of7_C_7old___chr5_70633337063741___1370
TGTCAGGCCTCTGAGCCCAAG-----------------------CT--------------
--------AAGCCATCATATCCCCTGTGAT-----------------------CTGCATG
AATACATTCAGATGGC------------------------------------CTGAAGGA
AGT--GAAGAATCACAAAAGAAATGAAAATGGCC--------------------------
------------------AGTTCCTGCCTTCACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTAAAATTCCTTCTCCTGG--------------
----CTCA------------GAAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAC----CACCTTGTG--------------
---------------------------AC-CCCTGTCCC-TGCCCACCAGAGAACAA-CC
CCC-TTTGACTGTAATTTTCCACTACTCACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C--TATCTCACTTAGCTGACTCTCTTTTCAGACTCAGCCCACCTGCACCC
AGGTG-------A-TTAAAAAGC-------------------CTG--TTT--GGTGGTCT
CTTCACATGGACACGTGTG-----AC---
>LTR7o_chr19_23032880_23033268_EncodeRepressed_SOLO_7old____chr19_2303288023033268____1388
--TCAGGCCTCTGAGCCCAAG-----------------------CT--------------
--------AAGCCATCATATCCCCTGTGAC-----------------------CTGCACG
TATACATCCAGATGGC------------------------------------CTGAAGCA
AGT--GAAGAATCATAAAAGAAATGAAAATGGAC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCA------------GAAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CACCGCCCC-TGCCCGCCAGAGAACAA-CC
CCC-TTTGACTGTAACTTTCCACTACCTACCCA-AATCCTATAA-----------AGAG-
GCCCCACAC-C--TATGTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTG-------A-TTAAAGCGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACGTGCGTG-----ACA--
>LTR7bc_chr21_9847516_9850363_1498_1_GRO5of7_GRO6of7_GRO7of7_7old____chr21_98475169847905____1389
-GTCAGGCTTCTGAGCCCAAG-----------------------CT--------------
--------AAACCATCATATCCCCTGTGAC-----------------------CTGCACG
TATACATCCAGGTGGC------------------------------------CTGAAGCA
AGT--GAAGAATCACAAAAGAAGTGAAAATGGCT--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACT--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCA------------GAAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCCGCCGGAGAACAA-TC
CTC-TTTGACTATAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C---ATCTCCCTTCACTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC
AGGTG-------A-ATAAGCAGCCTTATTGCTCATGCAGTGTCTG--TTT--GGTGGTCT
CTTCACATGGACGTGTGTG-----ACA--
>LTR7bc_chr9_41631249_41634104_1487_1_GRO5of7_GRO6of7_GRO7of7_C_7old___chr9_4163371441634104___1390
TGTCAGGCCTCTGAGCCCAAG-----------------------CT--------------
--------AAGCCATCATATCCCCTGTGAC-----------------------CTGCACT
TATACATCCAGGTGGC------------------------------------CTGAAGCA
AGT--GAAGAATCACAAAAGAAGTGAAAATGGCT--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACT--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCA------------GAAGATCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCCAACAGAGAACAA-TC
CTC-TTTGACTATACTTTTCCACTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C--TATCTCCCTTCACTGACTTTCTTTTCAGACTCAGCCCGCCTGCACCC
AGGTG-------A-ATAAACAGCCTTATTGCTCATGCAGTGTCTG--TTT--GGTGGTCT
CTTCACATGGACGTGTGTG-----AC---
>LTR7bc_chr9_61841391_61844246_1498_1_GRO5of7_GRO6of7_GRO7of7_C_7old___chr9_6184385661844246___1390
TGTCAGGCCTCTGAGCCCAAG-----------------------CT--------------
--------AAGCCATCATATCCCCTGTGAC-----------------------CTGCACG
TATACATCCAGGTGGC------------------------------------CTGAAGCA
AGT--GAAGAATCACAGAACAAGTGAAAATGGCT--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACT--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCA------------GAAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCCGCCAGAGAACAA-TC
CTC-TTTGACTATACTTTTCCACTACCTACTCA-AATCCTATAA-----------AACG-
GCCCCACCC-C--TATCTCCCTTCACTGACTTTCTTTTCAGACTCAGCCCGCCTGCACCC
AGGTG-------A-ATAAACAGCCTTATTGCTCATGCAGTGTCTG--TTT--GGTGGTCT
CTTCACATGGACGTGTGTG-----AC---
>LTR7bc_chr9_67736588_67739443_1504_1_GRO5of7_GRO6of7_GRO7of7_7old____chr9_6773658867736978____1390
-GTCAGGCCTCTGAGCCCAAG-----------------------CT--------------
--------AAGCCATCATATCCCCTGTGAC-----------------------CTGCACG
TATACATCCAGGTGGC------------------------------------CTGAAGCA
AGT--GAAGAATCACAGAAGAAGTGAAAATGGCT--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACT--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCA------------GAAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCCGCCAGAGAACAA-TC
CTC-TTTGACTATACTTTTCCACTACCTACTCA-AATCCTATAA-----------AACG-
GCCCCACCC-C--TATCTCCCTTCACTGACTTTCTTTTCAGACTCAGCCCGCCTGCACCC
AGGTG-------A-ATAAACAGCCTTATTGCTCATGCAGTGTCTG--TTT--GGTGGTCT
CTTCACATGGACGTGTGTG-----ACA--
>LTR7bc_chr4_131665993_131668842_1489_1_EncodeRepressed_GRO5of7_GRO6of7_GRO7of7_7old____chr4_131665993131666383____1390
-GTCAGGCCTCTGAGCCCAAG-----------------------CT--------------
--------AAGCCATCATATCCCCTGTGAC-----------------------CTGCAGG
TATACATCCAGATGGC------------------------------------CTGAAGCA
AGT--GAAGAATCACAAAAGAAGTGAAAATGGCT--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACT--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCA------------GAAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACCCC-TGCCCGCCAGAGAACAA-CC
CTC-TTTGACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AATG-
GCCCCACCC-C--TATCTCCCTTCACTGACTCTCTTTTTGGACTCAGCCTGCCTGCACCC
AAGTG-------A-ATAAACAGCCTTATTGCTCAGGCGCTGTCTG--TTT--GGTGGTCT
CTTCACATGGACGTGTGTG-----ACA--
>LTR7bc_chr1_48500554_48500987_h3k27ac_weakenh_SOLO_proto7bc____chr1_4850055448500987____1430
-GTCAGGCCTCTGAGCCCAAG-----------------------CT--------------
--------AAGCCATCATATCCCCTGTGAC-----------------------CTGCACG
TATACATCCAGATGGC------------------------------------CTGAAGCA
AGT--GAAGAATCACAAAAGAAGTGAAAATGGCT--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---A--------------------------------------------------------
----------------------------------------------------------AC
GTT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------AAC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCA------------GAAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCTGCTCC-TGCATGCAAGAGAAAAA-AC
CCC-TTTGACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-----GTCTCCCTTCACTGACT--CTTTTCGGACTCACCCTGCCTGCACCC
AGGTG-------A-ATAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCA
CTTCACACGGACGTGCGTG-----ACA--
>LTR7o_chr1_74002376_74002763_EncodeRepressed_SOLO_C_7old___chr1_7400237674002763___1386
TGTCAGGCTTCTGAGCCCAAG-----------------------CT--------------
--------AAGCCATCATATCCCCTGTGAC-----------------------CTGCACT
TATACATCCAGATGGC------------------------------------CTGAAGCA
ACT--GAAGAATCACAAAAGAAGTGAAAATGGCT--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------GC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCA------------GAAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCCGCCAGAGAACAA--C
CCC-TTTGAC--TAATTTTTCACTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCG-C--TATCTCCCTTCATTGACTCTCTTTTTGGACTCAGCCTGCCTGCACCC
TGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--GTT--GGTGGTCT
CTTCACTCGGACATGCATG-----AC---
>LTR7o_chr4_107290579_107295851_1932_KAP1_EncodeRepressed_GRO5of7_GRO6of7_GRO7of7_C_7old___chr4_107295474107295851___1377
---------TCTGAGCCCAAG-----------------------CT--------------
--------AAGCCATCATATCCCCTGTGAC-----------------------CTGCACG
TATACATCCAAATGGC------------------------------------CTGAAGCA
ACT--GAAGAATCACAAAAGAAGTGAAAATGGCT--------------------------
------------------GGTTTCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCA------------GAAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCTGCCTC-TGCTCACCAGAGAACAA---
CCC-TTTGACTGTAATTTTCCATTACCTACCCA-AATCCTATAA-----------AACT-
GCCCAACCC-C--TATCTCCCTTCACTGACTCCTTTTTTGGACTCAGCTCACCTACACCC
AGGTG-------A-TTAAAAT-CTTTATTGCTCATACAAAGCCTG--TTT--GATGGTCT
CTTCACACGGACGTGCATG-----AC---
>LTR7Y_chrX_Sltr_fr_1812__chrX_8495831784958680__
TGTCAGGCCTCTGAGCGCA-----------------------------------------
---------------------------GGC-----------------------CTGCACA
TATACATCCAGATGGC------------------------------------CTCAAGCA
AGT--GAAGAATCACAAAAGAAGTGAAAATGGCC--------------------------
------------------AGTTCCTGCCTTAATTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCA------------GAAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAA----CACCTTGTG--------------
---------------------------AC-TCCCACCCC-TGCCCACCAGAGAACAA-CC
CCC-TTTGACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AATG-
GCCCCACCC-C---ATCTCCCTTCGCTGACTCTCTTTTCGGAGTCAGCCCGCCTGCACCC
AGGTG-------A-CTAAAAACCTTTATTGCTCACACAAAGCCTG--TTT--GATGGTCT
CTTCACATGGACACGTGTG----------
>LTR7o_chr2_77897247_77897636_h3k27ac_EncodeRepressed_SOLO_7old____chr2_7789724777897636____1389
-GTCAGGCCTCTGAGGCCAAG-----------------------CT--------------
--------GAGCCATCATATCCCCTGTGAC-----------------------CTGCAGG
AATACATCCAGATGGC------------------------------------CTGAAGCA
AGT--GAAGGATCACAAAAGAAGTGAAAATGGCT--------------------------
------------------GGTTCCTGCCTTAATTTAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
GTT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------CT--GTGAAATTCCTTCTCCTGG--------------
----CTCA------------GAAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCTCACCCT-TGCCCGCCAGAAAACAA-CC
CCC-TTTGACTGTAATTTTCTACTACCTACTCA-AATCCTATAA-----------AACT-
GCCCCACCC-C---AACTCTCTTTGCTGACTGTCTTTTCCGACTCAGCCCGCCTGCACCC
AGGTG-------A-CTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTAACATGGACACGCGTG-----ACA--
>LTR7o_chr8_7166466571670448_1428_ZNF534_KAP1_k27ac_EncodeRepressed_GRO2of7__chr8_7166466571665020____1355
-GTCAGGCCTCTGAGCCCAAG---------------------------------------
-----------------------------C-----------------------CTGCACG
TATACATCCAGATGGC------------------------------------CTGAAGCA
AAT--GAAGAATCACAAAAGAAGTGAACATGGCT--------------------------
------------------GGATCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATGACTTCTCTTGG--------------
----CTCA------------GAAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------AAG----CACCCTGTG--------------
---------------------------AC-CTCCGCCCC-TGCCCACCAAAGAACAA-CC
CCC-TTTGACT--AATTTTCCATTACCTACCCA-AATCCTATAA-----------AACA-
GCCACACCC-C---ATCACCCTTCGCTGACTCTCTTTTCCAACTCAGCCTGCCTGCACCC
AGGTG-------A-TTAAAAAACTTTATTGCTCACACAAAGCCTG--TTT--AGTGGTCT
CTTCATATGGATGC---------------
>LTR7o_chr10_55971512_55976087_2643_ZNF534_EncodeRepressed_7old____chr10_5597151255971900____1388
-GTCAGGCCTCTGAGCCCAAG-----------------------CT--------------
--------AAGCCATCATATCCCCTGTGAC-----------------------CTGCACT
TATACATCCAGATGGC------------------------------------CTGAAGCA
AGT--GAAGAATCACAAAAGAAGTGAAAATAGCT--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTACTTCTCCTGG--------------
----CTCA------------GAAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------AAG----CACCTTATG--------------
---------------------------AC-CCCCACCAC-TGCCCGCCAGAGAACAA-CC
CCC-TTTGACTGTAATTTTCCATTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C---ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC
AACTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGAAGTTT
CTTTACACGGACATGTGTG-----ACA--
>LTR7o_chrY_17131121_17142090_2257_1_GRO5of7_GRO6of7_GRO7of7_C_7old___chrY_1714172317142090___1365
TATCAGGCCTCTGAGCCCAAG---------------------------------------
-----------------------------C-----------------------CTGCACG
TATACATCCAGATGAC------------------------------------CCTAAGCA
ACT--GAAGAAACACAAAAAAATTGAAAATGGCC--------------------------
------------------AGTTCCTGCCTTAATTTAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------AGC--------TT--GTGAAATTCCTTTTCCTGG--------------
----CTCA------------GAAGCTCCCCGAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACCCC-TGCCTGCAAGACAACAG-AC
CCC-TTTGACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACT-
GCCCTACCA-C--TAACTCCCTTTGCTGACTCTCTTTTTGGACTCAGCCCCCCTGCACCC
AGGTG-------A-TTAAAA-GCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGATGCATGTG-----AC---
>LTR7o_chr8_93878357_93878720_EncodeRepressed_SOLO_C_7old___chr8_9387835793878720___1363
TGTCAGGCCTCTAAGCCCAAG---------------------------------------
-----------------------------C-----------------------CTGCACG
TATACATCCAGATGGC------------------------------------CCAAAGCA
ACT--GAAGAATCACAAAAGAAGTGAAAATGGCC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGCAATTCCTTCTCCTGG--------------
----CTCA------------GAAGCTCCCCCTC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACTTTATG--------------
---------------------------AC-CCCCGTCCC-TGCCCCCAAGAGAACAA-CC
CCC-TTTGACTCTAATTTTCCACTACCTACCCA-AATCCTATGA-----------AACT-
GCCCCACCC-C--TAACTCCCTTTGCTGACTCTCTTTTTGGACTCAGCCCCCCTGCAC-C
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GATGGTCT
CTTCACATGGATGCAAGTG----------
>LTR7o_chr3_168930920_168933315_736_KAP1_EncodeTxn_GRO4of7_C_7old___chr3_168932955168933315___1360
TATCAGGTCTCTGAGCCCAAG---------------------------------------
-----------------------------C-----------------------CTGCACA
TAT--ATCCAGATGGC------------------------------------CTGAAGCA
ACT--GAAGAATCACAAAAGAAGTGAAAATGGCC--------------------------
------------------AGTTCCTGCCTTAATTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCA------------GAAGCTCCCCA-C---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCTGCCCC-TGCTTGCAAGACAACAA-CC
CTC-TTTGACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACT-
GTCCCACCC-C--TAACTCCCTTTGCTGACTCTTTTT--GGACTCAGCCCACCTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAATCCTG---TT--GGTGGTCT
CTTCACACAGATGCACATG-----AC---
>LTR7o_chr7_48941053_48941413_EncodeRepressed_SOLO_7old____chr7_4894105348941413____1359
-GTTAGGCCTCTGAGTCCAAG---------------------------------------
-----------------------------C-----------------------CTGCTCA
TAT--ATCCAGATGGC------------------------------------CTCAAGCA
ATG--GAAGAATCAC-----AAGTGAAAATGGCG--------------------------
------------------AGTTCCTGCCTCAACAGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACA--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCA------------GAGGCTCCCCAAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCTGCAAGAGAACAA-CC
CCC-TTTGACT--CGTTTTCCACTACCTACCCA-AATCCTATAA-----------AACT-
GCCCCACCC-C--TAACTCCCTTTGCTAACTCTCTTTTGGGACTCAGTCCACCTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--ATT--GGTGGTCT
CTTCACAGGGATGCTCATG-----ACA--
>LTR7o_chr9_10909283_10909642_EncodeRepressed_SOLO_7old____chr9_1090928310909642____1357
-GTCAGGCCTCTGAGCCTAAG---------------------------------------
-----------------------------C-----------------------CTGC---
-----ATCCAGATGGC------------------------------------CTGAAGCA
ACT--GAAGAATGACAAAAGAAGTGAAAATGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------GC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTC-TGG--------------
----CCCA------------GAAGCTCCCCAAA---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCTGCCCC-TGCCTGCAAGAGAACAA-CC
CCC-TTTGACTGCAATTTTCCACTGCTTACCCA-AATCCTGTAA-----------AACT-
GCCCCACCC-C--TAACTCTCTTTGCTGACTCTCTTTTCAGACTTAGCCCGCCTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGCGGTCT
CTTCACACAGACGCACGTG-----ACA--
>LTR7o_chr9_88514137_88514504_EncodeRepressed_SOLO_C_7old___chr9_8851413788514504___1366
TGTCAGGCCTCTGAGCCCAAG---------------------------------------
-----------------------------C-----------------------CTGCACG
TATACAACCAGATAGC------------------------------------CTGAAGCA
ACT--GAAGAATCACAAAAGAAGTTAAAATGGCC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTTCTTCTCCTGG--------------
----CTCA------------GAAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACCTTGTG--------------
---------------------------AC-CCCTGCCCC-TGCCCGCCAGGGAACAA-CC
CCC-TTTGACTGTAATTTTCCACTACCTACTCA-AATCCTATAA-----------AACT-
GACCCACCC-C--TAGCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACAGAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGATGCACGTG-----AC---
>LTR7o_chr5_44119742_44120093_EncodeTxn_SOLO_C_7old___chr5_4411974244120093___1341
------------------------------------------------------------
-----------------------------C-----------------------CTGCACG
TATACATCCAGATGAC------------------------------------CTGAAGCA
ACT--GAAGAATCACAAAAGAAGTGAAAACGGCT--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------GC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTTCTTCTTCTGG--------------
----CTCA------------GAAGCT-TCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCTGCCCC-TGCCTGCCAGAGAACAA--C
CCC-TTTGACTGTAATTTTCCATTACCTACACA-AATCCTATAA-----------AACT-
GCGCCACCC-C---ATCTCCCTTTGCTGACACTCTTTTTGGACTCAGCCCACCTGCACCC
AGGTT-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--T-T--GGTGGTCT
CTTCACAGGGACGTACCTG-----AC---
>LTR7o_chr3_122171296_122171683_EncodeRepressed_SOLO_C_7old___chr3_122171296122171683___1364
TGTCA-GCCTCTGAGCCCAAG---------------------------------------
-----------------------------C-----------------------CTGCAAG
TATACATCCAGATGAC------------------------------------CTGAAGCA
ACT--GTAGAATCACAAGAGAAGTGAAAATGGCT--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATC---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACA--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCA------------GAAGCTCTCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAA----TACCTTGTG--------------
---------------------------AC-TCCCGCCCC-TGCCCGCCAGAGAACAA--C
CCC-TTTGACTGTAATTTTCCATTACCTACCCA-AATCCTATAA-----------AACT-
GCCCCACCC-C--TATCTCCCTTTGCTGACTCTCTTTTTGGACTCAGCCCACCTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGATCT
CTTCACACAGATGTGCGTG-----AC---
>LTR7o_chrX_73801458_73809385_2684_KAP1_EncodeRepressed_GRO5of7_GRO6of7_GRO7of7_C_7old___chrX_7380901973809385___1366
TGTCAGGCCTCTGAGCCCAAG---------------------------------------
-----------------------------C-----------------------CTGCACA
TATACATCCAGATGGC------------------------------------CTGAAGCA
ACT--GAAGAATCACAAAAGAAGTGAAAATGGCC--------------------------
------------------GATTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCA------------GAAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CACTACCCC-TGCCTGCCAGAGAACAA-CT
CCC-TTTGATTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACT-
GCCCCATCC-C--TATCTCCCTTTGCTGACTTTCTTTTCAGACTCAGCCCGCCTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCCCACGGATGCACGTG-----AC---
>LTR7o_chr4_91045790_91046151_EncodeRepressed_SOLO_C_7old___chr4_9104579091046151___1361
TGTCAGGCCTCTGAGCCCAAG---------------------------------------
-----------------------------C-----------------------CTGCACA
TATACATCCAGATGGC------------------------------------CTGAAGCA
AGT--GAAGAATCACAAAATAAGTGAAAATGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCA------------GAAGCTCCCCCAT---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCTGCCCC-TGCCGGCCAGAGA---A-CC
CCC-TTTGACTGTAATTTTCCATTATCTACCCA-AATCCTGTAA-----------AACA-
GCCCCACCC-C--TATCTCCCTTTGCTGACTCTCTTTTCTGACTCAGCCCACCTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGATGCATGTG----------
>LTR7o_chrY_20905364_20905731_SOLO_7old____chrY_2090536420905731____1366
-ATCAGACCTCTGATCCCAAG---------------------------------------
-----------------------------C-----------------------CTGCATG
TATACATCCAGATGGT------------------------------------GTGAAGCA
ACT--GAAGAATCATAAAAGAAGTGAAGTTGGCC--------------------------
------------------AGTTCCTGCCTTAACTGGT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GAGAAATTCCTTCTCCTGA--------------
----CTCC------------GAAGCTCCGCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACGTTATG--------------
---------------------------AC-CCCCATCCC-TGCCCATGAGAGAAAAA-CA
CCC-TTTGACTGTAATTTTCCACTACCTACCCA-AATTCTATAA-----------AATG-
GCCCCGCCC-C--TATCTCCCTTTGCTGACTCTTTTTTTGGACTCAGTCCACCTGCATCC
AGGTG-------A-TTAAAAAGATTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGAAACACATG-----ACA--
>LTR7o_chrX_86537781_86538147_EncodeRepressed_SOLO_7old____chrX_8653778186538147____1366
-GTCAGGCCTCTGAGCCCAAG---------------------------------------
-----------------------------C-----------------------CTGCAGG
TATACATCCAGATGGC------------------------------------CTGAAACA
ACT--GAAGAATCACAAAAGAAGTGAAAATGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCA------------GAAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AA-CCCCGCCCC-TGCCCACCAGAGAACAA-CC
CCC-TTTGATTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AATG-
GCCCTACCC-C--TATCTCCCTTTGCTGACTCTCTTTTTGGACTCAGCCCACCTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGATGCACGTG-----ACA--
>LTR7o_chr15_45551236_45551603_EncodeRepressed_SOLO_C_7old___chr15_4555123645551603___1366
TGTCAGGCCTCTGAGCTCAAG---------------------------------------
-----------------------------C-----------------------CTGCATG
TATACATCCAGATGGC------------------------------------CTGAAGCA
AGT--GAAGAATCACAAAAGAAGTGAAAATGGCT--------------------------
------------------GGTCCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
GTT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GAGAAATTCCTTCTCCTGG--------------
----CTCA------------GAAGCTCCCACAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAA----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCCACCAGAGAACAA-CC
CCC-TTTGACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C--TATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTG-------C-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GATGGTCT
CTTCACACGGACGCATGTG-----AC---
>LTR7o_chr4_106410477_106410841_SOLO_C_7old___chr4_106410477106410841___1359
TGTCAGGCCTCTGAGCCCAAG---------------------------------------
-----------------------------C-----------------------CTGCACG
TATACATCCAGATGGC------------------------------------CAGAAGCA
AGT--GAAGAATCACAAAAGAAGTGAAAATGGCC--------------------------
------------------AGTGCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------CC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GCGAAATTCCTTCTCCTGG--------------
----CTCA------------GAAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTA--------------
---------------------------AC-CCCCGCCCC-TGCCCGCCAAAGAATAA-CC
GCC-TTTGACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACA-
GCCCCACCC-T--TACCTCCCTTTGCTGACTCTCTTTTTGGACTCAGCCCACCTGCACCC
AGGTG-------A-TTAAAAAACTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGAC------------AC---
>LTR7o_chrX_94221719_94222108_EncodeRepressed_SOLO_7old____chrX_9422171994222108____1366
-GTCAGGCCTCTGAGCCCAAG---------------------------------------
-----------------------------C-----------------------CTGCACG
TATACATCCAGATGGC------------------------------------CTGAAGCA
AGT--GAAGAATCACAAAAGAAGTGAAAATGGCC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--ATGAAATTCCTTCTCCTGG--------------
----CTCA------------GAAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCTGCCCC-TGCCCGCCAGAGAACAA-CC
CCC-TTTGACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AATG-
GCCCCACCC-C--TATCTCCCTTCGCTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GATGGTCT
CTTCACACGGATGCATGTG-----ATA--
>LTR7o_chr15_55417735_55418106_enh_SOLO_C_7old___chr15_5541773555418106___1348
TGTCAGGCCTCTGAGCCCAAG---------------------------------------
-----------------------------C-----------------------CTGCACG
TATACATCCAGATGGC------------------------------------CTGAAGCA
AGT--GAAGAATCACAAAAGAAGTGAAAATGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCA------------GAACCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCTGCCCC-TGCCCGCCACAGAATAA-CC
CCC-TTTGACTGTAATTTTCCATTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C--TATCTCCCTTCGCTGACTGTCTTTTCGGACTCAGCCCGCCTCCACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTT--------------------------
>LTR7o_chrX_16580050_16580415_SOLO_C_7old___chrX_1658005016580415___1364
TGTCAGGTCTCTGAGCCCAAG---------------------------------------
-----------------------------C-----------------------CTGCACG
TATACATCCAGATGGC------------------------------------CTGAAGTA
ACT--GAAGAATCACAAAAGAAGTGAAAATGGCC--------------------------
------------------GATTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCA------------GAAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCTGCCCC-TGCCCGCCAGAGAGCAA-CC
CCC-TTTGACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C--TATCTCCCTTCGCTGACTCC--TTTCGGACTCAGCCCGTCTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGTTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGTATG-----A----
>LTR7o_chr10_70626156_70626798_h3k27ac_enh_SOLO_44108_SMAD11_SOX2_TCF4_7old____chr10_7062615670626798____1365
TGTCAGGCCTCTGAGCCCAAG---------------------------------------
-----------------------------C-----------------------CTGCACA
TATACATCCAGATGGC------------------------------------CTGAAGCA
AGT--GAAGAATCACAGAAGAAATGAAAATGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ACT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTTTCCTGG--------------
----CTCA------------GAAGCTCCTCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GGG----CACCTTATG--------------
---------------------------TC-CCCTGCCCC-TGCCCACCAAAGAACAA-CC
CCC-TTTGACTGTAATTTTCCACTACCTACCCA-AATTCTATAA-----------AACG-
GCCCCACCC-G--TATCTCCCTTCACTGACTCTCTTTTTGGACTCAGCTCGTCTACACCC
AGATG-------A-TTAAAAACCTTTATTGCTCACACAAAGCCTG--TTT--GGTGATCT
CTTCACACGGATGCGTGTG-----A----
>LTR7o_chr1_196215314_196215677_EncodeTxn_SOLO_C_7old___chr1_196215314196215677___1363
TGTCAGGCCTCTGGACCCAAA---------------------------------------
-----------------------------C-----------------------CTGCACG
TATACATCTAGATGGC------------------------------------CTGAAGTA
ACT--GAACAATGACAAAAGAAGTGAAAATGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------GC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCA------------GAAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------TC-CCCCGCCCC-TGCCCGCCAGGGAACAA-CC
CTC-TTTGACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACG-
GTCC-ATCA-C--TATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGTCTGCCCCC
AGATG-------A-TTAAAAAGCTTTATCACTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGATGTGTGTG----------
>LTR7o_chr3_93938055_93944071_1829_1_EncodeTxn_7old____chr3_9393805593938442____1364
-GTCAGGCCTCTGAGCCCAAG---------------------------------------
-----------------------------C-----------------------CTGCACA
TATAGATCCAGATGGC------------------------------------CTGAAGCA
AGT--GAAGGATCACAAAAGAAGTGAAAATGGCT--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCA------------GCAGCTCCCCCAT---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTA--------------
---------------------------AC-CCCCGCCCC-TG-CCACCAGAGAACAA-CC
CC--TTTGACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C--TATCTCCCTTTGCTGACTCTCTTTTTGGACTCAGCCCGCTGGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCACATG-----ACA--
>LTR7o_chr4_6803094668037573_3949_ZNF534_EncodeTxn_GRO2of7__chr4_6803094668031311____1365
-GTCAGGCCTCTGAGCCCAAG---------------------------------------
-----------------------------C-----------------------CTGCACA
TATACATCCAGATGGC------------------------------------CTGAAGTA
ACT--GAAGAATCACAAAAGAAGTGAAAATGGCT--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCA------------GAGGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCTCCCC-TGTCTGCCGGAGAACAA-CC
CCC-TTTGACTATAATTTTCCACTACCTACCCA-AATCTTATAA-----------AATG-
GCCCCACCC-C--TATCTCTCTTTGCTGACTCTCTTTTTGGACTCA-TCCTCCTGCACCC
AGGCG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGCACATG-----ACA--
>LTR7o_chr10_122639304_122639670_EncodeTxn_SOLO_C_7old___chr10_122639304122639670___1366
TGTCAGGCCTCTGAGCCCAAG---------------------------------------
-----------------------------C-----------------------CTGCACA
TATACATCCAGATGGC------------------------------------CTGAAGTA
ACT--GAAGAATCACAAAACAAGTAAAAATGGCT--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
GTT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCA------------GAAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCCGCCAGAGAACAA-CC
CCC-TTTGACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C--TATCTCTCTTCGCTGACTCTCTTTTTGGACTCAGCCCACCTGCACCC
AGGTA-------A-TTAAAAAGCTTTATTGCTCACACAAAGCTTG--TTT--GGTGGTCT
TTTCACATGGACGCACATG-----AC---
>LTR7o_chr3_44344658_44350393_3426_ZNF534_KAP1_k27ac_EncodeTxn_GRO1of7_C_7old___chr3_4435002744350393___1366
TGTCAGGCCTCTGAGCCCAAG---------------------------------------
-----------------------------C-----------------------CTGCACA
TACACATCCAGATGGC------------------------------------CTGAAGTA
ACT--GAAGAATCACAAAAGAAGTGAAAATGAGT--------------------------
------------------GGTTCTTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TC--GTGAAACTTCTTCTCCTGG--------------
----CTCA------------GAAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCTCGCCCC-TGCCCTCAAGAGAACAA-CC
CCG-TTTGACTGTAATTTTTCACTACCTACCCA-AATCCTATAA-----------AACT-
GCCCCACCC-C--TAACTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGCCCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACGCACATG-----AC---
>LTR7o_chr1_210111090_210116207_2699_ZNF534_KAP1_k27ac_EncodeTxn_GRO1of7_C_7old___chr1_210115848210116207___1359
TGTCAGGCCTCTGGGCCCAAG---------------------------------------
-----------------------------C-----------------------CTGCACA
TATACATCCAGATGGC------------------------------------CTGAAGTA
ACT--GAAGAATGACAAAAGAAGTGAAAATGGCT--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCA------------GAAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCTCACCAGAGAACAA-CC
CCT-ATTGACTATAATTTTCCACTACCCACCCA-AATCCTATAA-----------AACG-
GCCC-ACCC-C--TACCTCTCTTCGCTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC
AGATG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCT--------GGTGGTCT
CTTCACACAGATGCACATG----------
>LTR7o_chr2_81397265_81397631_EncodeRepressed_SOLO_C_7old___chr2_8139726581397631___1366
TGTCAGGCCTCTGAGCCCAAG---------------------------------------
-----------------------------C-----------------------CTGCACA
TATACATCCAGATGGC------------------------------------CTGAAGCA
AGT--GAAGAATCACAAAAGAAGTGAAAATGGCC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTTCTTCTCCTGG--------------
----CTCA------------GAAGCTCCCCAAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AG-CCCCGCCCC-TGCCCGCCAGAGAACAA-CC
CCC-TTTGACTATAAATTTCCACTACCTACCCA-AATCCTATAA-----------AACG-
GCCCAACCC-C--TAACTCCCTTCGCTGACTCTCTTTTTGGACTCAGCCTTCCTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTACTCACACAAAGCTTG--TTT--GGTGGTCT
CTTCACATGGACGCGCATG-----AC---
>LTR7o_chrX_25577351_25577738_EncodeRepressed_SOLO_7old____chrX_2557735125577738____1364
---CAAGCCTCTGAGCCCAAG---------------------------------------
-----------------------------C-----------------------CTGCAGG
AATACATCCAGATGGC------------------------------------CTGAAGCA
AGT--GAAGAATCACAAAAGAAGTGAAAATGGCC--------------------------
------------------GGTTCCTGCCATAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCA------------GAAGCTCCCCAAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACCCC-TGCCCACCAGGGAACAA-CC
GCC-TTTGACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AATG-
GCCCCACCC-C--TATCTCCCTTCCCTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC
AGGTG-------A-TTAAAAAGTTTTATTCCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCACATG-----ACA--
>LTR7bc_chr10_105727637_105733785_2329_ZNF534_k27ac_GRO5of7_GRO6of7_GRO7of7_proto7bc____chr10_105727637105728004____1366
-GTCAGGCCTCTGAGGCCAAG---------------------------------------
-----------------------------C-----------------------CTGCATG
TATACATGCAGATGGC------------------------------------CTGAAGCA
AGT--GAAGAATCACAAAAGAAGTGAAAATTGCT--------------------------
------------------GTTTCTTATCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGGAATTCCTTCTCCTGG--------------
----CTCA------------GAAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AA-CCCTGCCCC-TGCCTGCAAGAGAAAAA-CC
CCC-TTTGACTATAATTTTCCATTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C--TATCTCCCTTTGCTGACTCTCTTTTTGGACTCTGCCCGCCTGCACCC
AGGTG-------A-ATAAATGGCTTTATTGCTCACACAAAGCTTG--TTT--GGTGGTCT
CTTCAAATGGACGTGCGTG-----ACA--
>LTR7o_chr1_192978517_192980540_981_ZNF90_KAP1_EncodeTxn_GRO5of7_GRO6of7_GRO7of7_C_7old___chr1_192980176192980540___1363
TGTCAGGCCTCTGAGCCCAAG---------------------------------------
-----------------------------C-----------------------CTGCATG
TATACATACAGATGGC------------------------------------CTGAAGCA
ACT--GAAGAATCACAAAAGAAGTGAAAATGGCA--------------------------
------------------GGTTCCTGCCTTAGCAGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCA------------GAAGCTCCCGCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCTGCCAGAGAACAA-TC
CCC-TTTGACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C--TATCTCCCTTTGCTGAGTC---TTTTGGACTCAGCCTGCCTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGTGCCTG-----AC---
>LTR7o_chr12_54942538_54948366_2366_1_k27ac_EncodeRepressed_chimeric_GRO5of7_GRO6of7_GRO7of7_C_7old___chr12_5494797754948366___1366
TGTCAGGCCTCTGAGCCCAAG---------------------------------------
-----------------------------C-----------------------CTGCATG
TATACATCCAGATGGC------------------------------------CTGAAGCA
AGT--GGAGAATCACAAAAGAAGTGAAAATGGCC--------------------------
------------------TGTTGCTGCCTTAACAGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACT--------TT--GTGAAATTCCTTCTTCTGG--------------
----CTCA------------GAAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACCCC-TGCCTGCCAGAGAATAA-TC
CCC-TTTGACTGTAATTTTCCACTACCTACCTA-AATCCTATAA-----------AACA-
GCCCCACCC-C--TATCTCCCTTTGCTGACTCTCTTTTTGGACTCAGCCTGCCTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTTGTCT
CTTCACACGGACGCCCGTG-----AC---
>LTR7o_chr1_70367629_70374024_2156_ZNF534_k4me3_EncodeTxn_KLF4_wanghigh_GRO3of7_7old____chr1_7036762970368061____1388
-GTCAGACCTCTGAGCCCAAG-----------------------CA--------------
--------AAGCCATCATATCCCCTGTGAC-----------------------CTGCATG
TATACATCCAGATGGC------------------------------------CTGAAGCA
AGT--GAAGAATCACAAAAGAAGTGAAAAGGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAACTTCCTTCTCCTGG--------------
----CTCA------------GAAGCTTCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCTGCCATAGAACAA--C
CCC-TTTGATTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C--TATCTCCCTTCGCTGACACTCTCTTTGGACTCAGCCTGCCTGCACCT
AGGTG-------A-TTAAAAAGCTTTATTGCTCACGCAAAGCCTG--TTT--GGTGGTCT
CTTCAGACGGACATGCATG-----ACA--
>LTR7o_chr4_133531334_133534636_1279_ZNF534_EncodeTxn_GRO5of7_GRO6of7_GRO7of7_C_7old___chr4_133534207133534636___1362
-GTCAGGTCTCTGAGCCCAAG---------------------------------------
-----------------------------C-----------------------CTGCACA
TATACATCCAGATGGC------------------------------------ATGAAGCA
AGT--AAAGAATCACAAAAGAAGTGAAAATGGCC--------------------------
-------------------GTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TC--GTGAAATTCCTTCTCCTGG--------------
----CTCA------------GAAGCTCCCCAAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCGCATC-TGCCTGCAAGAGAACAA-CC
CTC-TTTGACTGTAATTTTCCACTACCCAACCA-AATCCTATAA-----------AACG-
GCTCCACCC-C--TATCTCCCTTCACTGACTCTATTTTTGAACTCAGCCCACCTGCGCCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTA--TTT--GGTGGTCT
CCTCACATGGATGCATGTG----------
>LTR7o_chr3_58437208_58437582_h3k27ac_weakenh_SOLO_C_7old___chr3_5843720858437582___1373
TGTCAGGTCTCTGAGCCCAAG---------------------------------------
-----------------------------C-----------------------CTGCACG
TATTCATTCAGATGGC------------------------------------CTGAAGCA
AGT--GAAGAATCACAAAAGAACTGAAAATGGCC--------------------------
------------------GGTTCCTGCCTTAACTGGT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCA------------GGAGCTCCCCGAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACTTC-TGCCAGCCAGAGAACAA-AC
CCC-TTTGACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCG-C--TATCTTCCTTCGCTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACATAAAGCCTA--TTT--GGTGGTCT
CTTCACATGGACGCGCAT-----------
>LTR7o_chr5_23421412_23421800_EncodeRepressed_SOLO_7old____chr5_2342141223421800____1388
-GTCAGGTCTCTGAGCCCAAG-----------------------CT--------------
--------AAGCCATCATATCCCCTGTGAC-----------------------CTGCCCA
TATACATCCAGATGGC------------------------------------CTGAAGCA
ACT--GAAGCATCACAAAAGAAGTGAAAACGGCC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AT
GTT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCA------------GAAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-TCCTGCCCC-TGCCGGCCACAAAACAA--C
CCG-TTTGATTGTAATTTTCCACTGCCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-T--TATCTCCCTTCGCTGACTCTCTTTTTGGACTCAGCCCACCTGCACCC
AGGTG-------A-TTGAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGCGTATG-----ACA--
>LTR7o_chr3_143072320_143072752_h3k27ac_EncodeTxn_SOLO_C_7old___chr3_143072320143072752___1387
TGTCAGACCTCTGAGCCCAAG-----------------------CT--------------
--------AAGCCATCATATCCCCTGTGAC-----------------------CTGCACG
TATACATCCAGATGGC------------------------------------CTGAAGCA
AGT--GAAGAATCACAAAAGAAGTGAAAATGGCC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCCCCTGG--------------
----CTCA------------GAAGCTCCCTGAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCTGGGCCC-TGCCCTCCGGAGAACAA-CT
CCC-TTTGACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C--TATCTCCCTTCGCTGACTC--TTTTCGGACTCAGCCCGCCTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCATACAAAGTCTG--TTT--GGTGGTCT
CTTCACACGAACGCGCGTG-----AC---
>LTR7o_chr4_5049354_5049738_EncodeRepressed_SOLO_C_7old___chr4_50493545049738___1384
TGCCAGGCCTCTGAGCCCAAG-----------------------CT--------------
--------AAGCCATCATAACCCCTGTGAC-----------------------CTGCACA
TATACATCCAGATGGC------------------------------------CTGAAGCA
ACT--GAAGAATCACAAAAGAAGTGAAAATGGCC--------------------------
------------------TGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCA------------GAAGCTCCC-GAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCTCGCCCC-TGCCTCCCAGAGAAC-----
CCC-TTTGACTTTAATTTTCCATAACCTACCCA-AATCCTATAA-----------AACT-
GCCCCACCC-A--TATCTCTCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACTG
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACACGCATG-----AC---
>LTR7o_chr8_126422954_126423309_h3k27ac_enh_SOLO_NANOG_44108_C_7old___chr8_126422954126423309___1354
TGTCAGGCCTCTGAGCCCAAG---------------------------------------
-----------------------------C-----------------------CTGCACA
TATACATCCAGATGGC------------------------------------CTGAAGTA
ATT--GAAGAATCACAAAAGAAGTGAAAATGGCC--------------------------
------------------GGTTCCTG----------------------------------
------------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCA------------GAAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCTGCCCC-TGCCCACCAGAGAACAA-CT
CCC-TTTGACTGTAATTTTCCACTGCCTACCTA-AATGCTATAA-----------AACA-
GCCCTACCC-C--TATCTCCCTTAGCTGACTCTCTTTTTGGACTCAGCCTGCCTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTTACACGGACATGCGTG-----AC---
>LTR7o_chr8_111805283_111805649_h3k27ac_EncodeTxn_SOLO_7old____chr8_111805283111805649____1360
-GTCAGGCCTCTGAGCCCAAG---------------------------------------
-----------------------------C-----------------------CTGCAGG
TATACATCCAGATGGC------------------------------------CTGAAGTA
ACT--GAAGAATCACAAAAGAAGTAAAAATGGCC--------------------------
------------------TGGTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGT--------------
----CTCA------------GAAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCCACCAGAGAACAG-C-
CCC-TTTGACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACA-
GCCCCACTC-C--TATCTCCCTTAGCTGACTCTCTTTTCGGACTCAGCCCCCCTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--G-----CT
CTTCACATGGACACGCGTG-----ACA--
>LTR7o_chr20_59472852_59473252_EncodeTxn_SOLO_C_7old___chr20_5947285259473252___1364
TATCAGGCCTCTGAGCCCAAG---------------------------------------
-----------------------------C-----------------------CTGCACG
TATACATCCAGATGGC------------------------------------CTGAAGCT
AGT--GAAGAATCACAGAAGAAGTGAAAATGGCC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ACT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCA------------GAAGC-CCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCCACCAGAGAACAA-CC
CTC-TTTGACTGTAATTTTCCACTACCTACTCA-AATCCTATAA-----------AACG-
GCCCCACCC-C--TATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTTGTCT
CTTCACA-GGACACGTGTG-----AC---
>LTR7o_chrX_101964692_101965081_EncodeRepressed_SOLO_NANOG_44108_C_7old___chrX_101964692101965081___1366
TGTCAGGCCTCTGAGCCCAAG---------------------------------------
-----------------------------C-----------------------CTGCAGG
TATACATCCAGATGGC------------------------------------CTGAAGCA
ACT--GAAGAATCACAAAAGAAGTGGAAGTGGTC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCA------------GAAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCGGCCCC-TGCCCACCAGCGAACAA-GC
CCC-TTTGACTGTAATTTTCCATTACCTACTCA-AATCCTATAA-----------AATG-
GCTCCACCT-C--TATCTCCCTTCACTGACTCTCTTTTAGGACTCAGCCTGCCTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGATCT
CTTCATACGGACACTGGTG-----AC---
>LTR7o_chr19_20518831_20524470_1962_1_EncodeRepressed_GRO4of7_C_7old___chr19_2052408820524470___1382
TGTCAGGCCTCTGAGCCCAAG-----------------------CT--------------
--------AAGCGATCATATCCACTGTGAC-----------------------TTGCATG
TATACATCCAGATGGC------------------------------------CTGAAGTA
ACT--GAAGAATCACAAAAGAAGTGAAAATGGCC--------------------------
------------------TGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTT---CTGG--------------
----CTCA------------GAAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CATCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCCACCAGAGAACAA-CC
CCC-TTTGACGGTAATTTTCCATTACCTACCCA-AATCTTATAA-----------AATG-
GCCCCACCC-C--TATTTCCCTTCGC----TCTCTTTTTGGACTCAGCCTGCCTGCACCC
AGGTA-------A-TTAAAAAGCTTTATTGTTCACACGAAGCCTG--TTT--GGTGGGCT
CTTCACATGGACACGCATG-----AC---
>LTR7o_chr3_59802349_59802741_h3k27ac_EncodeRepressed_SOLO_7old____chr3_5980234959802741____1388
-GTCAGGCCTCTGAGCCCAAG-----------------------CT--------------
--------AATCCATCATATCCCCTGTGAC-----------------------CTGCACG
TATACATCCAGATGGC------------------------------------CTGAAGTA
ACT--GAAGAATCACAAAAGAAGTGAAAATGGCC--------------------------
------------------TGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGA--------------
----CTCA------------GAAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCCACCAGAGAACAA-CC
CCC-TTTGACTGTGATTTTCCATTACCCACCCA-AATCCTGTAA-----------AACG-
GCCCCACCC-C---ATCTGCCTTCCTTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACATAAAGCCTA--TTT--GGTGGTCT
CTTCACATGGACACGCGTG-----ACA--
>LTR7o_chrY_12559210_12565355_1507_1_GRO5of7_GRO6of7_GRO7of7_C_7old___chrY_1256497112565355___1384
TGTCAGGCCTCTGAGCCCAAG-----------------------CT--------------
--------AAGCCATCATATCCCCTGTGAC-----------------------ATGCACA
TATACATCCAGATGGC------------------------------------CTAAAGCA
AGT--GAAGAATCACAAAAGAAGTGAAAATTGCT--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTT---CTGA--------------
----CTCA------------GAAGCTCCCCAAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACCCC-TGCCTGCCAGAGAACAA-CC
CCC-TTTGACTGTAACTTTCCACGAACTACCCA-AATCCTATAA-----------AATG-
GCCCCACCT-C--TATCTCCCTTTGCTGACTCTCTTTTCAGACTCAGCCCACCTGCACCC
AGGTG-------A-TTAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGTGCATG----------
>LTR7o_chr8_103002078_103004589_1495_KAP1_k27ac_EncodeTxn_GRO3of7_7old____chr8_103002078103002468____1389
-GTCAGGCCTCTGAGCCCAAG-----------------------CT--------------
--------AAGCCATCATATCCCCTGTGAC-----------------------CTGCACG
TATACATCCAGATGGC------------------------------------CTGAAGCA
ACT--GAAGAATCACAAAAGAAGTGAAAATGGCT--------------------------
------------------GATTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCA------------GAAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACCCC-TGCCTGCCAGAGAACAA-CC
CCC-TTTGACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AATG-
GCCTTATCC-C--TATTTCCCTTTGCTGACTCTCTTTTCAGACTCAGCCCACCTGCACCC
AGATG-------A-TTAAAAATTTTTATTGCTCACATAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACACGCGTG-----ACA--
>LTR7o_chr6_40861398_40868767_5456_1_weakenh_GRO5of7_GRO6of7_GRO7of7_C_7old___chr6_4086833640868767___1387
TGTCAGGCCTCTGAGCCCAAG-----------------------CT--------------
--------AAGCCATCGTATCCCCTGTGAC-----------------------CTGCACG
TATACGTCCAGACGGC------------------------------------CCAAAGCA
AGT--AAAGAGTCACAAAAGAAGTGAAAATGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCA------------GAAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACCCC-TGCCCGCAAGGGAACAA-CC
CCC-TTTGACTGTAATTTTCCGCTGCCCACCCA-AATCCCATAA-----------AACG-
GCCCCATCC-A--TCTCTCCCTTTGCTGATTCTCTTTTTGCACTCAGCCTGCCTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGTCTG--TTT--GGTGGTCT
CTTCACATGGACACGCATG----------
>LTR7o_chrX_87688451_87688815_EncodeTxn_SOLO_44108_7old____chrX_8768845187688815____1364
-GTCAGGCCTCTGAGCCCAAG---------------------------------------
-----------------------------C-----------------------CTGCAGG
TATACATCCAGATGGC------------------------------------CCTAAGCA
AGT--GAAGAATCACAAAAGAAGTGAAAATGGCC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCA------------GAAGCTCCCCCGC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTA--------------
---------------------------AC-CCCCACCCC-TGCCAGCAAGAGAACAA-AC
CCC-TTTGACTGTAATTTTCCACTACCCACCCA-AATCCTATAA-----------AACG-
GCCCCACCC-C--TATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCTGCCTGCAGCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACAGAAAGCCTG--TTT--CGTGGTCT
TTTCACACGGACGCGCATG-----A----
>LTR7o_chr2_84220940_84221336_EncodeRepressed_SOLO_C_7old___chr2_8422094084221336___1386
TGTCAGGCCTCTGAGCCCAAG-----------------------CT--------------
--------AAGCCATCACATCCCTTGTGAC-----------------------CTGCATG
TATTCATCTAGATGGC------------------------------------CTGAAGGA
AGT--GAAGAATCACAAAAGAAGGGAAAATGGCC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCA------------AAAACTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCCGCAAGAGAACAA-CC
CCC-TTTGACTGTAATTTTCCACTACCCACCCA-AATCCTATAA-----------AACA-
GCCCCACCC----TGTCTCCCTTCGCTGACTCTCTTTTTGGACTCAGCCCACCTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCAAACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGATGTGCATG----------
>LTR7o_chr2_197578410_197587726_3986_1_k27ac_TSSflanking_NANOG_chimeric_GRO1of7_7old____chr2_197578410197578776____1366
-GTCAGGCCTCTGAGCCCAAG---------------------------------------
-----------------------------C-----------------------CTGCATG
TATACATCCAGATGGC------------------------------------CCAAAGTA
ACT--GAAGAATCACAAAAGAAGTGAAAATGGCC--------------------------
------------------ATTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCA------------GAAATTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCAGCCC-TGCCCGCCAGAGAACAA-CC
CCC-TTTGACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACT-
GCACCACCC-A--TATCTCCCTTCACTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGATGCGCATG-----A--CA
>LTR7o_chr18_38489771_38490123_weakenh_SOLO_7old____chr18_3848977138490123____1351
-GTCAGTCCTCTGAGCCCAAG---------------------------------------
-----------------------------C-----------------------CTGCACG
TATACATCCAGATGGC------------------------------------CTGAAGTA
ACT--GAAGAATCACAAAAGAAGTGAAAATGGCC--------------------------
------------------GGTT-CTACCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AT
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCGTGG--------------
----CTCA------------GGAGCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TGCCTTGTC--------------
---------------------------AC-CCTAACCCC-TGCCTG--------------
CCC-TTTGACTGTAATTTTCCACTACCTACCCA-GATCCTATAA-----------AACG-
GCCCCACCC-C--TATCTCCCTTCGCTGA--CTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTA-------A-TTTAAAAGCTTTATTGCTCACATAAAGCCTG--T-T--GGTGGTCT
CTTCACACGGATGCAGGTG-----A--CA
>LTR7o_chr5_163334360_163340585_3053_KAP1_EncodeTxn_GRO5of7_GRO6of7_GRO7of7_7old____chr5_163334360163334733____1364
-ATCAGGCCTCTGAGCCCAAG---------------------------------------
-----------------------------C-----------------------CGGCAGG
TATACATCCAGATGGC------------------------------------CTGAGGCA
ACT--GAAGAATCACAAAAGAAGTGAAAATGGCC--------------------------
------------------GGTTTCTGCCTTAACTGAT-----------------------
---A--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TC--GTGAAATTCCTTCTCCTGG--------------
----ATCA------------GAAGCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACCCC-TGCCTGCCAGAGAACAA--C
CCC-TTTGACTGTAATTTTCCACTACCTACACA-GATCCTATAA-----------AACT-
GTGCCACCC-C--TATCTCCCTTCACTGA--CTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--T-T--GGTGGTCC
CTTCACACAGACGCATGTG-----A--CA
>LTR7o_chr7_52332923_52339041_3493_KAP1_EncodeTxn_GRO4of7_C_7old___chr7_5233867252339041___1360
TGTCAGGCCTCTGAGCCCAAG---------------------------------------
-----------------------------C-----------------------CTGCACG
TATACATCCAGATGGC------------------------------------CTGAAGCA
ACT--GAAGAATCACAAAAGAAGTGAAAATGGCC--------------------------
------------------AGTTCCTGCATTAACTGAT-----------------------
---C--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------TTC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCA------------GAAGCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------AAG----CACCTTGTG--------------
---------------------------AC-CCCCACCCC-TGCCTGCCAGAGAACCA--C
CCC-TTTGACTGT-ATTTTCCACTACATACACA-AATCCTGTAA-----------AACT-
GCCCCACCC-T--TATCTGCCTTCACTGA--CTCTTTTGGGACTCAGCCCACCTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--T-T--GGTGGTCT
CTTCACACAGACATACATG-----A--T-
>LTR7o_chrX_94052057_94052429_EncodeTxn_SOLO_NANOG_44108_7old____chrX_9405205794052429____1360
-GTCAGGCCTCTGAGCCCAAG---------------------------------------
-----------------------------C-----------------------CTGCATG
TATACATCCAGATGGC------------------------------------CTCAAAGA
ACT--GAAGAATCACTAAAGAAGTGAAAATGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGC--------------
----CTCA------------GAAGCTCCCT-GC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------AAG----CACCTTGTG--------------
---------------------------AC-CCTCTCCCC-TGCCCGCCAGAGAACAA--C
CCC-TTTGACTGTAATTTTCCATTACCTACACA-AATCCTATAA-----------AACT-
GCTCCACCC-C--TATCTCCCTTCGCTGA--CTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGATCACAC-AAGCCTG--T-T--GGTGGTCT
CTTCACATGGACGCGCGTG-----A--CA
>LTR7o_chr10_118701974_118702351_h3k27ac_enh_SOLO_7old____chr10_118701974118702351____1354
-GTCAGGCCTCTGAGCCCAAG---------------------------------------
-----------------------------C-----------------------CTGCATG
TATACATCCAGATGGC------------------------------------CTAACGCA
ACT--GAAAAATCACAAAAGAAGTGAAAATGGCC--------------------------
------------------GGTTTCTGCCTTAACTGAG-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATGCCTTCTCCTGG--------------
----CTCA------------GAAGCTCCCT-GC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------GAG----CACCTTGTG--------------
---------------------------AC-CC------C-TGCCCACCACAGAACAA--C
CCC-TTTGACTGTAATTTTCCACTACCTACACA-AATCCTATAA-----------AACT-
GCCCCAGCT-C---ATCTCCCTTCGCTGA--TTCTTTTCGGATTCAGCCCACCTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--T-T--GGTGGTCT
CTTCACAAAGACGCCCGTG-----A--CA
>LTR7o_chr4_80466_80832_EncodeTxn_SOLO_C_7old___chr4_8046680832___1364
TGTCAGGCCTCTGAGCCCAAG---------------------------------------
-----------------------------C-----------------------CTGCACG
TGTACATCCAGATGGC------------------------------------CTGAGGCA
ACT--GAAGAACCACAAAAGAAGTGAAAATGGCT--------------------------
------------------GCTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCA------------GAAGCTCCCCAAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCTGTCCC-TGCCTGCCAGAGAACAA--C
CCC-TTTGACTGTAATTTTCCATTACCTACCCA-AATCCTATAA-----------AACT-
GCCCCACCC-C---ATCTCCCTTCGCTGACTCCTTTTTTGGACTCAGCTCGTCTGCACCC
AGGTG-------A-TTAAAAAGCTTTACTGCTCACACAAAGCCCG--TTT--GGTGGTCT
TTTCACACGGATGCGCATG-----A--C-
>LTR7o_chr19_8203645_8204010_h3k27ac_enh_SOLO_44108_SMAD11_C_7old___chr19_82036458204010___1365
TGTCAAGCCTCCGAGTCCAAG---------------------------------------
-----------------------------C-----------------------CTGCACG
TGTATTTCTAGATGGC------------------------------------CTGAAGCA
ACT--GAAGAATCACAAAAGAAGTGAAAATGCCT--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCA------------GAAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CTCCGCCCC-TGCCTACCAGAGAACAA-AC
CCC-TTTGACTGTAGTTTTCCACTACCTACCCA-AATCCTATAA-----------AACA-
GCCTCACCC-C---ATCTTCCTTCGCTGACTCCTTTTTTGGACTCAGCCCGCCTGCACCC
AGGTG-------A-TTGAAAAGCTTTACTGCTCACACAAAGCCTG--TTT--GGCGGTCT
CTTCACATGGATGCGCATG-----A--C-
>LTR7o_chr10_83429512_83429886_EncodeRepressed_SOLO_C_7old___chr10_8342951283429886___1364
TGTCAGTCCTCTGAGCCCAAG---------------------------------------
-----------------------------C-----------------------CTGCATG
TATACATCCAGATGGC------------------------------------CTGAGGCA
ACT--GAAGAACCACAAAAGAAGTGAAAATGGCT--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCA------------GAAGCTCCCCATT---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------G---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGGCTGCCAGAGAACAA-CC
CCC-TTTGACTGCAATTTTCCGCTACCTGCCCA-AATCCTATAA-----------AACT-
GTCTCACCC-C---ATCTCCCTTAGCTGACTCCTTTTTTGGACTCAGCCTGCCTGCACCC
AGGTG-------A-GT-AAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
TTTCACGTGGATGCGTGTG-----A--C-
>LTR7o_chr4_64579543_64579905_EncodeTxn_SOLO_7old____chr4_6457954364579905____1362
-GTCAGGCCTCTGAGCCCAAG---------------------------------------
-----------------------------C-----------------------CTGCTTG
TATACATCCAGATGGC------------------------------------CTGAAGCA
ACT--GAAGAATCACAAAAGAAGTGAAAATGGCT--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
------------------------------------------------------------
------------------------------------------------------------
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCA------------GAAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCCGCTGGAGAACAA-CC
CCC-TTTGACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACA-
GCTCCACCC-C---ATCTCTCTTCGCTGACTCCTTTTTTGGACTCAGCCCGCCTGCACCC
AGGTG-------A-TTAAAAAGCTTTGTTGCTCACACAAAGCCTA--TTT--GGTGGTCT
CTTCACACGGATGCGGGTA-----A--CA
>LTR7o_chr11_43071243_43071597_h3k27ac_weakenh_SOLO_C_7old___chr11_4307124343071597___1344
------------------------------------------------------------
-----------------------------C-----------------------CTGCAGG
TATACATCTGGATGGC------------------------------------CTGAGGCA
ACT--GAAGAACCACAAAAGAAGTGAAAATGGCC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCCAG--------------
----CTCA------------GAAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------AAG----CACCTTGTG--------------
---------------------------AC-CCCTGCCCT-TGTCCGCCAGAGAACAA-CC
CCC-TTTGACTGTAATTTTCCACTACCTATCCA-AATACTATAA-----------AACT-
GCCTCACCC-A---GTCTTCCTTTGCTGACTCCTTTTTTGGACTCAGTCTGCCTGCACTC
AGGTG-------A-TTAAATAGCTTTATTGCTCACATAAAGCCTG--TTT--GGTGGTCT
TTTCACACGGACTTGTGTG-----A--C-
>LTR7o_chr2_166641470_166641846_EncodeRepressed_SOLO_C_7old___chr2_166641470166641846___1363
--TCAGGCCCCTGAGCCCAAG---------------------------------------
-----------------------------C-----------------------CTGCACG
TATACATCCAGATGGC------------------------------------CTGAGGCA
ACT--GAAGAACCACAAAAGAAGTGAAAATGGCC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GCC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCA------------GAAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------GAG----CACCATGTG--------------
---------------------------AC-CCCCGCCCC-TGCCTGCCAGAGAACAA-AC
CCC-TTTGACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACT-
GCCCCACCC-C---GTCTCCCTTTGCTGACTCCTTTTTGGGACTCAGTTGGCCTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCCG--TTT--GGTGGTCT
CTTCACAGGGACATGCAGG-----A--C-
>LTR7o_chr1_233471991_233472366_h3k27ac_EncodeRepressed_SOLO_7old____chr1_233471991233472366____1365
-GTCAGGGCTCTGAGCCCAAG---------------------------------------
-----------------------------C-----------------------CTGCACT
TATAAATCCAGATAGC------------------------------------CTGAGGCA
ACT--GAAGAACCACAAAAGAAGTGAAAATGGCC--------------------------
------------------AGTTCTTGCCTTAACGGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTTTCCTGG--------------
----CTCA------------GAAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------GAG----CACCTTGTG--------------
---------------------------AC-CCCTGCCCC-TGCACGCCAGAGAACAA-TC
CCC-TTTGACTGTAATTTTCCACTACCTACCCA-AATTCTATAA-----------AACT-
GCCCCACCC-C---ATATCCCTTTGCTGACTCCCTTTTTGGACTCAGCCCGCCTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGTGTGTG-----A--CA
>LTR7o_chr2_116520794_116521170_EncodeRepressed_SOLO_7old____chr2_116520794116521170____1365
-GTGAGGTCTCTGAGCCCAAG---------------------------------------
-----------------------------C-----------------------CTGCACA
TGTACATTCAGATGGC------------------------------------CTGAGGCA
ACT--GAAGAACCACAGAAGAAGTGAAAATGGGC--------------------------
------------------AGTTCTTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AT
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TG--GTGAAATTCCTTCTCCTGG--------------
----CTCA------------GAAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CACCTCCCC-TGCCCACCAACGGACAA-AC
CCC-TTTGACTGTAATTTTCCACTACCTACCCA-AATCCTCTAA-----------AACT-
GCCGCACTC-C---ATCTCCTTTTGCTGACTCCTTTTTCGGACTCAGCCCGCCTGCACGC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTT--TTT--GGTGTTCT
CTTTACACAGACGCGTGTG-----A--CA
>LTR7o_chr14_20494772_20495138_h3k27ac_weakenh_SOLO_C_7old___chr14_2049477220495138___1363
TGTCAGGCGTCTGAGCCCAAG---------------------------------------
-----------------------------C-----------------------TTGCACG
TGTATATCCGGATGGC------------------------------------CTGAAGCA
ACT--GAAGAATCACAAAAGAAGTGAAAACAGTC--------------------------
------------------GATTCCTTCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCA------------GAAGCTCCCCTAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACCCC-TGCCCGCCAGAGAACAA-TC
CCC-TTTGACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACA-
GCCCCACCC-C---ATCTCCCTTTGCTGACTCCTTTTTTGGACTCAGTCCGCCTGCACCC
AGGT--------A-TTAAAAAGCTTTATTGCTCACACAAAGCCCG--T-T--GGTGGTCT
CTTCACACGGACACACGTG-----A--C-
>LTR7o_chr21_37988279_37988654_EncodeRepressed_SOLO_7old____chr21_3798827937988654____1365
-GTTAGGCCTCTGAGCCCAAG---------------------------------------
-----------------------------C-----------------------CTGCATG
TATATATTCAGATGGC------------------------------------CTGAGCCA
ACT--GAAGAACCACAAAAGAAGTGAAAATGGCT--------------------------
------------------CATTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------GC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAACTCCTTCTCCTGG--------------
----CTCA------------GAAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCTGCCCT-TGCCCGCCAGAGAACAA-CC
CCC-TCTGACTGTAATTTTGTACTACTTACCCA-AATCCTATAA-----------AACT-
GCCCCACCC-C---ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC
AGGTG-------G-TTAAAAAGCTTTATTGCTCACACCAAGCCTG--TTT--GGTGGTCT
CTTCACATGGATGGGCGTG-----A--CA
>LTR7o_chr13_54211342_54211745_EncodeTxn_SOLO_7old____chr13_5421134254211745____1361
----AGGCCTCTGAGCCCAAG---------------------------------------
-----------------------------C-----------------------CTGCACG
TATACATCCAGATGGC------------------------------------CTGAGACA
ACT--GAAGAACCACAAAAGAAGTGAAAATGGCC--------------------------
------------------GATTCCTGCCTTAGCTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AT
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCA------------GAAGCCCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCTGACAGAAAACAA-C-
CCC-TTTGACTGTAATTTTCCACTACCTACCCA-AATTCTATAA-----------ATCT-
GCCCCACCC-C---ATCTCCCCTCCCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTG-------A-TTAAAAAGCTTTCTTGCTCACACAAAGCC-G--TTT--GGTGGTCT
CTTCACACGGATGCGCTTG-----A--CA
>LTR7o_chr8_9802983_9809297_2405_1_EncodeRepressed_GRO4of7_7old____chr8_98029839803343____1359
-GTCAGGCCTCTGAGCCCAAG---------------------------------------
-----------------------------C-----------------------CTGCAGG
TATACATCCAGATAGC------------------------------------CTGAAGCA
ACT--GAAGAATCACAAAG---GTAAAAATGGCC--------------------------
------------------CGTTCCTGATTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TG--GTGAAACTCCTTCT-CCGG--------------
----CTCA------------GAAGCTCTCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTCTG--------------
---------------------------AC-CCCCGCCCC-TGCCTGCAAGAGAACAA-CT
CCC-TTTGACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACT-
GCCCCACCC-C--TATCTTCC-TTGCTGA--CTGTTTTCGGACTCAGCTCGCCTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCATATGGACACGCATG-----A--CA
>LTR7o_chr2_215089939_215096031_3616_KAP1_EncodeRepressed_GRO5of7_GRO6of7_GRO7of7_7old____chr2_215089939215090306____1365
-GTCAGGCCTCTGAGCCCAAG---------------------------------------
-----------------------------C-----------------------CTGCCTG
TATATATCCAGATGGC------------------------------------CTGAGACA
ACT--GAAGAACCACAAAA---GTGAAAATGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCT-CTGG--------------
----CTCA------------GAAGCTCTCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CTCCTTGTG--------------
---------------------------AC-CCCTGCCCC-TGCCTGCAAGAGAACAA-CC
CCC-TTTGACTGTAATTTTCCACTATCTACCCA-AATCCTATAA-----------AACT-
GCCCCACCC-C--TAACTTCCTTTGCTGACTCTCTTTTCGGAATCAGCCCACCTGCACCC
AGGTA-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACACGTGTG-----A--CA
>LTR7o_chr5_76789188_76789562_SOLO_C_7old___chr5_7678918876789562___1363
TGTCAGGCTTCTGAGCCCAAG---------------------------------------
-----------------------------C-----------------------CTGCAAG
TATACATCCAGATGGC------------------------------------CTGAAGCA
ACT--GAAGAATCACAAAA---GTGAAAATGGCC--------------------------
------------------GGTTCCCGCCTTGACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGACATTCCTTTT-CTGG--------------
----CTCC------------AGAGCTC-CCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCAGCAAGAGAACAA-CC
CCC-TTTGACTGTAATTTTCCACTACCTACTCA-AATCCTATAA-----------AACT-
GCCCCACTG-C--TAACTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TT---GGTGGTCT
CTTCACATGGATGCACATG-----A--C-
>LTR7o_chr8_131308262_131308638_h3k4me3_TSSflanking_SOLO_NANOG_44108_SOX2_7old____chr8_131308262131308638____1363
-GTAAAGCCTCTGAGCCCAAG---------------------------------------
-----------------------------C-----------------------CTGCAGG
TATACATCCAGATGGC------------------------------------CTGAAGCA
ACT--GAAGAATCACAAAA---GTGAAAATGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCT-CTGG--------------
----CTCA------------GGAGCTC-CCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCTGCAAGAGAACAA-CC
CCC-TTTGACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACT-
GCCCCACCC-C--TAACTCCCATTGCTGACTCTCTTTTAGGACTCAGCCCACCTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TT---GGTGGTCT
CTTTACATGGATGCACAAG-----A--CA
>LTR7o_chr2_98045195_98045558_EncodeTxn_SOLO_C_7old___chr2_9804519598045558___1362
TGTCAAGCCTCTGAGCCCAAG---------------------------------------
-----------------------------C-----------------------CGGCCTG
TATACATCCAGATAGC------------------------------------CTGAAGCA
ACT--GAAGAATCACAAAA---GTGAAAATGGCC--------------------------
------------------GGTTCCTGACTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCT-CTGG--------------
----CCCA------------GGAGCTC-CCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------AAG----CACCTTGTG--------------
---------------------------AC-CCCCG-CCC-TGCCCTCAAGAGAACAA-CC
CCC-TTTGACTGTAATTTTCCACTACCCACACA-AATCCTATAA-----------AACT-
GCCTCACCC-C--TAGTTCCCTTTGCTGACTCTTTTTTCAGATTCAGCCCACCTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TT---GGTGGTCT
CTTCACATGGACACGCATG-----A--C-
>LTR7o_chr2_211261807_211267653_2647_KAP1_EncodeTxn_7old____chr2_211261807211262181____1364
-GTCAGGCCTCTGAGCCCAAG---------------------------------------
-----------------------------C-----------------------CTGCCCA
TATACATCCAGATGGC------------------------------------CTGAAGCA
ACT--GAAGAATCACAAAA---GTGAAAATGGCC--------------------------
------------------AATTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTAT-CTGG--------------
----CTCC------------GGAGGTC-CCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------GAG----CACCTTGTG--------------
---------------------------AC-CCTCGCCCC-TGCCTGCAAGAGAACAA-CC
CCC-TTTGACTATAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACT-
ACCCCACCC-C--TAACTCCCTTTGCTGACTCTCTTTTCGGATTCAGCCCACTTGCCCCC
AGGTG-------A-TTAAAAGGCTTTATTGCTCACACAAAGCCTG--TT---GGGGATCT
CTTCACATAGACACATGTG-----A--CA
>LTR7o_chrX_96841750_96842123_TSSflanking_SOLO_44108_C_7old___chrX_9684175096842123___1364
TGTCAGGCCTCTGAGCCCAAG---------------------------------------
-----------------------------C-----------------------CTGCATG
TATACGTCCAGATGGC------------------------------------CTGAAATA
ACT--GAAGAATCCCAAAA---GTTAAAATGGCC--------------------------
------------------GGTTCCTGCCTTAACTGGT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ACT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCA------------AAAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AT-CCCCGCCCC-TGCCCACAAGAGAACAA-CC
CCC-TTTGACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACT-
GCCCCACCC-C--TAACTCCTTTAGCTGACTCTCTTTTCGGATTCAGCCCGCCTGCACCT
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGTCTG--TTT--GGTGGTCT
CTTCACAGGGACACGCATG-----A--C-
>LTR7o_chrX_130277374_130280192_1506_ZNF534_EncodeTxn_GRO3of7_7old____chrX_130277374130277735____1360
---CAGGCCTCTGAGCCCAAG---------------------------------------
-----------------------------C-----------------------CTGCATG
TATACATCCAGATGGC------------------------------------CTGAAGTA
ACT--AAAGAATCACAAAAGAAGTGAAAATGGCC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AT
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCT---GG--------------
----CTCA------------GAAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCTGCTAGAGAACAA-CC
TCC-TTTGACTGTAATTTTCCGCTACCTGTCCA-AATCCTGTAA-----------AACT-
GCCCCACCC-C--TAACTCCCTTTACTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCT---TTT--GGTGGTCT
CTTCACATGGACGCGCATG-----A--CA
>LTR7Y_chrY_Sltr_fr_1848__chrY_1620568516206051__
TGTCAGGCCTCTGAGTCTAAG---------------------------------------
-----------------------------C-----------------------CTACACG
TATACATCCAGATGAC------------------------------------CTGAAGCA
ACT--GAAGAATTACAAAAGAAGTGAAAATGGCC--------------------------
------------------CGTTCCTG-TTTAACTGAT-----------------------
---A--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCA------------GGAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GTG----CACCTTGTG--------------
---------------------------AC-CCCCACCCC-TTCCTGCAAGAGAGCAA-AC
CCC-TTTGACTATAATTTTGCACTACCTACCCA-AATCCTATAA-----------AACT-
GCCCCACCC-A--TAACTCTCTTTGCCAACTC-CTTTTCAGACTCAGCCTGCCTGCACCC
AGGTG-------A-AAAAACAGCTTTATTGCTCACGCAAAGCCTG--TTT--AATTGTCT
TTTCACACAGATGTGTGTG----------
>LTR7Y_chrY_Sltr_fr_1849__chrY_1637929216379658_+_
-GTCAGGCCTCTGAGTCTAAG---------------------------------------
-----------------------------C-----------------------CTACACG
TATACATCCAGATGAC------------------------------------CTGAAGCA
ACT--GAAGAATTACAAAAGAAGTGAAAATGGCC--------------------------
------------------CGTTCCTG-TTTAACTGAT-----------------------
---A--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCA------------GGAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GTG----CACCTTGTG--------------
---------------------------AC-CCCCACCCC-TTCCTGCAAGAGAGCAA-AC
CCC-TTTGACTATAATTTTGCACTACCTACCCA-AATCCTATAA-----------AACT-
GCCCCACCC-A--TAACTCTCTTTGCCAACTC-CTTTTCAGACTCAGCCTGCCTGCACCC
AGGTG-------A-AAAAACAGCTTTATTGCTCACGCAAAGCCTG--TTT--AATTGTCT
TTTCACACAGATGTGTGTG-----A----
>LTR7o_chr5_43797818_43798213_EncodeRepressed_SOLO_7old____chr5_4379781843798213____1363
-ATCAGGCCTCTGAGTCCAAG---------------------------------------
-----------------------------C-----------------------ATGTG-G
TATATATCCAGATGGC------------------------------------CTGAAGCA
ACT--GAAGAATCACAAAAGAAGCACAAATTGCC--------------------------
------------------GGTTCCTGCTTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GCC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCA------------GAAGCTCCCCCAA---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACCCC-TGCCCTCAAGAGAACAA-CC
CCC-TTTGACTGTAATTTTCCACTACCTACACA-AATCCCATAA-----------AACT-
GCCCCACCC-C--TAACTCCCTTTGCTAACTG-TCTTTCAGACTCAGCCCACCTGCACCC
AGGT--------A-ATAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGATGTGTGTG-----A--CA
>LTR7o_chr7_22913465_22918928_2289_KAP1_EncodeTxn_GRO4of7_7old____chr7_2291346522913829____1354
-GTCAGGCCTCTGAGCCCAAG---------------------------------------
-----------------------------C-----------------------CTGCGTG
TATACATCCAGATGGC------------------------------------CTGAAGCA
ACT--GAAGAATCACTAAAGAAGTGAAAATGGCT--------------------------
------------------GGTTCCCGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGACATTCCTTCTCCTGG--------------
----CTCT------------GGAGCTCCC-------------------------------
------------------------------------------------------------
------------------------------------------------------------
-----------------------------------------TTGTG--------------
---------------------------AC-CCCTGCCCC-TGCCCACAAGAAAACAA-CT
CCC-TTTTACTGTAATTTTCCACTACTTACCCA-AACCCTATAA-----------AACT-
GCCACACCT-C--TAACTCCTTTTGCTGACTCTCTTTTCAGACTCAGCCCACCTACACCT
AGGTG-------A-ATAAACAGCTTTACTGCTCACACAACGCCTG--TTT--GCTGGTAT
CTTCACACGGACACGTGTG-----A--CA
>LTR7o_chr7_30479569_30485283_1724_KAP1_EncodeTxn_GRO4of7_7old____chr7_3047956930479952____1365
-GTCAGGCCTCTGAGCCCAAG---------------------------------------
-----------------------------C-----------------------CTGCATG
TATACATCCAGATGGC------------------------------------CTGAAGCA
ACT--GAGGAATCACAAAGGTAGTGAAAATGGCT--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCA------------GAAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACTTTGTA--------------
---------------------------GC-CCCGGCCCC-TGCCCACCAGAGAACAA-CC
CCC-TTTGACTGTAATTTTCCACTACCCACACA-AATCCTATAA-----------AGCT-
ACCACACCC-C--TAACTCCCTTTGCTGACTCTTTTTTTCGACTCGGCCCACCTGCACCC
AGGTG-------A-ATAAACAGCTTTATTGCTCACGCAAAGCCT---TTT--GGTGGTCT
CTTCACACGGACACGTGTG-----A--CA
>LTR7o_chr16_62662587_62662952_EncodeRepressed_SOLO_C_7old___chr16_6266258762662952___1361
TGGCAGGCCTCTGAGGCCAAG---------------------------------------
-----------------------------C-----------------------CTGCACA
TATATATCCAGGTGGC------------------------------------CTGAAGCA
ACA--GAAGAATCACAAAAGATGTGAAAATGGCT--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGAAATTCCTTCTCCTGG--------------
----ATCA------------GAAGCTCCTCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCTGCCCC-TGGCCGCAAGACAACAA-CC
CCC-TTTGACTGTAATTTTCCACTACCCACCCA-AATCCTATAA-----------AACT-
GCCCCACCC-C--TAACTCCCTTTGCTGACTCCTTTTGCGGACTCAGCCCACCTGCACAT
GGGTG---------ATAAAAAGCTTTATGGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACATGTG------------
>LTR7o_chr4_72173242_72173608_EncodeRepressed_SOLO_7old____chr4_7217324272173608____1365
-GTCAGGCCTCTGAGCCCAAG---------------------------------------
-----------------------------C-----------------------CTGCACG
TATACGTACAGATGGC------------------------------------CTGAAGCA
ACT--GAAGAATCACAAAAGAAGCAAAAATGGCT--------------------------
------------------GGTTCCTGTCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCA------------GAAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------TC-CTCTGCCCC-TGCCCGCAAGAGAACAA-CC
CCC-TTTGACTGTAATTTTCCACTAACTACTCA-AATCCTATAA-----------AGCT-
GCCCCACCC-C--TGTCTCCCTTTGCTGACTCCTTTTTTGGACTCAGCCCACCTGCACCC
AGGTG---------ACAGAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACCGACATGCGTG-----A--CA
>LTR7o_chr17_54935084_54935436_EncodeTxn_SOLO_C_7old___chr17_5493508454935436___1351
--TCAGGCCTCTGAGCCCAAG---------------------------------------
-----------------------------C-----------------------CTGCAGG
TATACATCCAGATGGC------------------------------------CTGAACCA
ACT--GAAGAATCACAAAAGAAGTGAAAATGGCC--------------------------
------------------AATTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCA------------GAAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAA----CACTTTGTG--------------
---------------------------AC-TCCTGCCCC-TGCCCTCCAGAGAACAA-CC
CCC-TTTGACTATAATTTTTCGCTACCTACCCA-AATCCTATAA-----------AACT-
GCCCCACCC-C--TAACTCCCTTTGCTGACTCATTTTTTGGACTCAGCCCCCCTGCACCC
AGGTG-------A-ATAAACAGCTTTATTGCTCACACAAAGCCTC--TTT--GGTGGTCT
CTTCACGC---------------------
>LTR7o_chr18_58641222_58646708_1672_KAP1_EncodeRepressed_GRO4of7_C_7old___chr18_5864633758646708___1365
TGTCAGGCCTCTGTGCCCAAG---------------------------------------
-----------------------------C-----------------------CTGCACA
TATACAACCAGATGGC------------------------------------CTGAAGCA
ACT--GGAGAATCACAAAAGAAGTGAAAATGGCT--------------------------
------------------GGTTCCTCCTTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCA------------GAAGCTCCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCATCCC-TGCCCGCCAGAGAACAA--C
CCG-TTTGACTGTAGTTTTCCACTACCCACCCA-AATCCTGGTA-----------AACT-
GCCCCACCC-C--TATCTCCCTTTGCTGATTCCTTTTTCGGACTCAGCCCCCCTGCACCC
AGGTG-------A-ATAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGAAGTGCATG-----A--C-
>LTR7o_chr15_41285321_41285686_h3k4me3_TSS_SOLO_C_7old___chr15_4128532141285686___1364
TGTCAGGCCTCTGAGCCCAAG---------------------------------------
-----------------------------C-----------------------CTGCACG
TATATATCCAGATGGT------------------------------------CTGAAGCA
ACA--GAAGAATCACAAAAGAAGTGAAAATGGCC--------------------------
------------------AGTTCCTGCCTTGACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCATCTCCTGG--------------
----CTCA------------GAAGCACCCCCAC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACCCC-TGCCCGCAAGAACACAA-CC
CCC-TTTGACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACT-
GCC-CACCC-C--TAACTCCCTTTGCTGACTCCTTTTT-GGACTCAGCCCGCCTGCACCC
AGGTG-------A-ATAAATAGCTTTATTACTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCGCACGGACGCGCCTA-----A--C-
>LTR7o_chr9_35151223_35151596_EncodeRepressed_SOLO_wangmod_C_7old___chr9_3515122335151596___1364
TGTCAGGCCTCTGAGCCCAAG---------------------------------------
-----------------------------C-----------------------CTGCACC
TGTACATCCAGATGGA------------------------------------CTGAGGAA
ACT--GCAGAACCACAAAAGAAGTGAAAATGGCC--------------------------
------------------AGTTCCTGACTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGG--------------
----CTCA------------GAAGTTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACCCC-TGCCCGCAAGAGAACAA-CC
CCC-TTTGAGTGTAATTTTCCACTACCTACCCA-ACTCCTATAA-----------AACT-
GCCCCACCC-C--TAACTCCCTTTGCTGTCTC-TTTTTCTGACTCAGCCCACCTGCACCC
AGGTG-------A-TTAAACAGTTTTTTTGCTCACACAAAGCCTG--TCT--GGTGATCT
CTTCACACTGACACACTTG-----A--C-
>LTR7C_chr1_2ltr_int_fr_59__chr1_2300399623004403__
TGTCAGGTCTCTGAGCACAAGCTAAGCCATTATAACCCCTGTGA----------------
-----------------------------C-----------------------CTGCACG
TATACATCCAGATGGC------------------------------------CTGGAGCA
AGT--GAAGAACCACAAAAGA---------------------------------------
------------------------------------T-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATTCCACCATTGTGATTTCTTCCTACCCCAGCCCAACTAATAAATCA-------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGACATTTCTCC-CCTGGACAATGAGT-----
----CTTA------------GGATTTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------CTG----CACCTGGTG--------------
---------------------------AC-CCCCACCCC-TGCCCGCAAGAGAT-AA-CC
ACT-TTTAACTGTAATTGTCCACTACCTACCCA-AATCCTATAA-----------AACT-
GCCCCACCC-C--TATCTCCCTTTGTTGACTCATTTTTTGGCCTCAGCCTGCCTGCACCC
AGGTG-------AAATAAACAGCTTTATTGCTTACACAAAGCCTG--TTT--GGTGATCT
CTTCACATGGACGTGCGTG----------
>LTR7C_chr6_Sltr_1210__chr6_132777899132778308__
TGTCAGGCTTCTGAGCCCAAGCTAAGCCATCATAACCCCTGTGA----------------
-----------------------------C-----------------------CTGCACG
TATACATCCAGATGAC------------------------------------CTGGAGCA
ACT--GAAGAACCATAAAAGA---------------------------------------
------------------------------------T-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATTCCACCATTGCGATTTGTTCCTGCCCCACCCCAACTGATCAATTG-------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGACATTCCTCC-CCTGGACAATGAGT-----
----CTTA------------TGATTTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------CTG----CACCTTGTG--------------
---------------------------TC-CCTCGCCCC-TGCCCGCAAGAGAT-AA-CC
ACC-TTTAACTGTAATTTTCCATTACCTACCCA-AAGCCTGTAA-----------AACT-
GCCCCAAGC-C--TATCTCACTTTGCTGACTCCTTTTTCGGACTCAGTCTGCCTGCACCC
AGGT--------AATTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
GTTTACACGGACGCGTGTG-----A--C-
>LTR7Y_chr4_Sltr_fr_1163__chr4_151145269151145668_+_
-GTCAGGCCTCTGAGCCCAAGCTAAGCCA---------CTGTGA----------------
-----------------------------C-----------------------CTGCACG
TATACATCTGGATGGC------------------------------------CTGAAGCA
GCT--GAAGAACCACAAAAGA---------------------------------------
------------------------------------T-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATTCCACCATTGTGATTTGTTCTTGCCCCACCCCAACTAATCAATCG-------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTTATGTTCCTCC-CCAGGACAATGAGT-----
----CTCC------------TGATCTCCCT-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------CTG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCCGCAAGAGAC-AA-CC
CCC-TTTAACTGCAATTTTCCACTACCTACCCA-AATCCTTTAA-----------AACT-
GCCCCACTC-C--TGTCTCCCTTTGCTGACTCCTTTTTTGGAATGAGCCCGCCTGCACCC
AGGTG-------AAATAAACAGCCTTGTTGCTCTCACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACGTGCGTG-----A----
>LTR7C_chr1_2ltr_int_fr_81__chr1_4285671242857150_+_
-GTCAGGCCTCTGAGCCCAGGCTAAGCCATCATAACCCCTGTGA----------------
-----------------------------C-----------------------CTGCACG
TATACATCCAGATGGC------------------------------------CTGGAGCA
ACT--GAAGAACCACAAAAGA---------------------------------------
------------------------------------T-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATTCCACCATTGTGATTTGTTCCTGCCCCACCCTAACTAATGAATCA-------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGACAGTCCTCC-CCTGGACAAAGAGT-----
----CTCA------------GGAGCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------GAG----CACCATGTG--------------
---------------------------AC-CCCCACCCC-TGCCCGCAAGAGAT-AA-CC
ACC-TTTAAC--TAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACT-
GCCCCACCC-C--TATCTCCCTTTGCTGACTCTGTTTTTGGACTCAGCCCACTTGCACCC
AAGTG-------AAATAAACAGCCTTGTTGCTCACACAAAGCCTG--TTA--GGTGGTCT
CTTCACATGGATGTGCGTA-----A--C-
>LTR7Y_chr11_Sltr_fr_246__chr11_6204472062045126__
TGTCAGGCCTCTGAGCCCAAGCTAAGCCATCATAACCCCTGTGA----------------
-----------------------------C-----------------------CTGCCCG
TATACATCCAGATGGC------------------------------------CTGGAGCA
ACT--GAAGAACCACAAAAGA---------------------------------------
------------------------------------T-----------------------
---G--------------------------------------------------------
----------------------------------------------------------CC
ATTCCACCCTTGTGATTTGTTCCTGCCCCACCCCAACTAATCAATCA-------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGACATTCCTCC-CCTGGACAATGAGT-----
----CTCA------------TGAGCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------CTG----CCCCCTGTG--------------
---------------------------AC-CCCCACTCC-TGCCTGCAAGAGAC-AA-CC
CCC-TTTAACTGTAATTTTCCACTACCTACCCG-AATCCTATAA-----------AACT-
GCCCCACCC-C---ATCTCCCTTTGCTGACTC--TTTTCTGACTCAGCCCACTTGCACCC
AAGCG-------AAATAAAAAGTTTTATTGCTCACGCAAAGCCTG--TTA--GGAGGTCT
CTTCACATGGAAGCGCGTG----------
>LTR7C_chr4_2ltr_int_fr_1009__chr4_154056546154056954_+_
-GTCAGGTCTCTGAGCCCAAGCTAAGCCATCATAACCCCTGTGA----------------
-----------------------------C-----------------------CTGCACG
TATACATCCAGAGGGC------------------------------------CTGGAGCA
ACT--GAAGAACCACAAAAGA---------------------------------------
------------------------------------T-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATTCCACCATTGTGATTTGTTCCTGCCCCACCCCAACTAATCAATCG-------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGACATTCCTCC-CCTGGAAAATGAGT-----
----CTCA------------TGATCTCCCC-AT---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------CTG----CACCTTATG--------------
---------------------------AC-TCCTGTGGC-TGCCTGCAAGAGAT-AA-CC
ACC-TTCAACTGTAATTTTCCACTATCTACCCA-AATCCTATAA-----------AAAT-
GCCCCACCC-C----TCTCCCTTTGCTGACTCCTTTTTTGTACTCAGCCCACCTGCACCT
AGGTG-------AT-TAAAAAGCTTTATTACTTGCACAAAGCCTG--TCT--GGTGGTCT
CTTCACACGGACTCATGTG-----A--CA
>LTR7C_chr9_2ltr_int_fr_1452__chr9_25096872510119_+_
-GTCAGGCCTCTGAGCCCAAGCTAAGCCATCATATCCCCTGTGA----------------
-----------------------------C-----------------------CTGCAGG
TATACATCCAGAAGGC------------------------------------CTGAAGTA
ACT--GAAGAACCACAAAAGA---------------------------------------
------------------------------------T-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATCTCTCCATTGTGATTTGTTCCTGCCCCACCCTAACTGATCAATCG-------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGACATTCCTTC-CCTGGACAATGAGT-----
----CTCA------------TGATCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------CTG----CACCTTGTG--------------
---------------------------AC-CTCCACTTC-TGCCCAAAAGAGAT-AA-CC
ACG-TTTAACTGTGCTTTTCCACTGCCTACCCA-AATCCTATAA-----------AACT-
GCCCCGCCC-C--TATCTCCCTTTGCTGACTCCTTTTTCGTACTCAGCCCGCCTGCACCC
AGGTG-------AT-TAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACTCATGTA-----A--CA
>LTR7C_chr7_2ltr_int_fr_1293__chr7_106829635106830073_+_
-GTCAGGCCTCTGAGCCCAAGCTAAGCCATCACAACCCCTGTGA----------------
-----------------------------C-----------------------TTGCATG
TATACATCCAGATGGT------------------------------------CTGGAGCA
ACT--GGAGAACCACAAAAGA---------------------------------------
------------------------------------T-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATTCCACCATTGTGATTTGTTCCTGCCCCACCCTAACTAATCAATCG-------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TC--GTGACATTCCTCC-CCTGGACAATGTGT-----
----CTCA------------TGATCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------CTG----CCCCTTGAG--------------
---------------------------AC-CCCCGCCCC-TGCCCATAAGAGAT-AA-CC
ACC-TTTAACTGTAATTTTCCACTACCTACCCA-AATCCTATAG-----------AACT-
GCCCCACCC-C--TATCTCCCTTTGCTGACTCCTTTTTCGGACTCAGCCCACCTGCACCC
AAGTG-------AA-TAAAGAGCCTCGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CCTCACACAGACGCATGTA-----A--CA
>LTR7C_chr1_Sltr_36__chr1_209471561209472000__
TGTCAGGCCTCTGAGACCAAGCTAAGCCATCATAAACCCTGTGA----------------
-----------------------------C-----------------------CTGCATG
TATACATCCAGATGGC------------------------------------CTGGAGCA
ACT--GAAGAACCACAAAAGG---------------------------------------
------------------------------------T-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATTTCACCATTGTGATTTGTTCCTGTCCCACCCTAACTAATCAATCG-------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGACATTCCTCC-CCTGGACAATGCGT-----
----CTCA------------TGATCTTCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------CTG----CACCTAGTG--------------
---------------------------AC-CCCCGCCCC-TGCCCACAAGAAAG-AA-CC
ACT-TTTAACTGTAATTTTCCACTGCCTACCCA-AATCCTATAA-----------AACT-
GCCCCACCC-C--TATCTCCCTTTGCAGACTCCTTTTTCAGACTCAGTCCGCCTGCACCC
AGGTG-------AT-TAAAAAGCTTTATTGCTCACACAAAGCCTT--TTT--GGTGGTCT
CTTCACACAGACACGTGTA-----A--C-
>LTR7C_chr13_Sltr_345__chr13_112799302112799699__
TGTGAGGCCTCTGAGCCCAAGCTAAG-----------CCTGTGA----------------
-----------------------------C-----------------------CTGCACA
TATACACCCAGATGGC------------------------------------CTGGAGCA
ACT--GAAGAACCACAAAAGA---------------------------------------
------------------------------------T-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATTCCACCTTTGTGATTTGTTCCTGCCTCACCCCAACTAATCAATCA-------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGACATTCC-CC-CCTGGACAATGAGT-----
----CTCA------------TGACCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------CTG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCCACAAGGGAT-AA-CC
ACC-TTTAACTGTAATTTTCCACTACATACCCA-AATCCTATAG-----------AACT-
GCCCCACCT-C--CATCTCCCTTTGCTGACTCCTTTCTCGGACTCAGCCCACTTGCATCC
AAGT--------AA-TAAACAGCCTTGTTGCTCACACAAAGCCTA---TT--GGTGGTCT
CTTCACATGGACGCGTGAG-----A--C-
>LTR7C_chr14_Sltr_fr_395__chr14_3869978738700262__
------GCC---------AAGCTAAGCCATCATAACCCCTGTGA----------------
-----------------------------C-----------------------CTGCATG
TATACATCCAGATGGC------------------------------------CTGAAGCA
ACT--GAAGAACCACAAAAGA---------------------------------------
------------------------------------T-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATTCCACCATTGTGATTTGTTCCTGCCCCACCCTAACTAATCAATTG-------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGACATCCCTCC-CCTGGACAATGAGT-----
----CTCA------------TCATCTCCC--AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------CTG----CACCTTATG--------------
---------------------------AC-CCCCGCCCC-TGCCCACAAGAGAT-AA-CC
ACC-TATAACT--AATTTTCCACTACCCACCCA-AATCCTATAA-----------AACT-
GCCCCATCC-C--TATTTCCCTTTGCTGACTCCTTTCTTGGACTCAGCCCACTTGCACCC
AAGT--------AA-TAAACAGCCTCATTGCTCACACAAAGCCTG---TT--GGTGGTCT
CTTCACATGGATGCATGTA-----A--C-
>LTR7C_chr21_Sltr_802__chr21_2027381320274221_+_
-GTCAGGCCTCTGAGCAGAAGCTAAGCCATCATAACCCCTGTGA----------------
-----------------------------C-----------------------CTGCATG
TATACATCCAGACGGC------------------------------------CTGGAGCA
ATG--GAAGAACAACAAAAGA---------------------------------------
------------------------------------T-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATTCCATCATT-TGATTTGTTCCTGCCCCACCCCAACTAATCAATCG-------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGACATTCCTCC-CCTGGACAATGAGT-----
----CCCA------------TGATCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------CTG----CACCTTGTG--------------
---------------------------AC-CCCTGCCCC-TGCCCGCAAGAGAT-AA-CC
AAC-TTTAACTGTAATTTTCCATTACCTACCCA-AATCCTATAA-----------AACT-
GCCCCACTC-C--TATCTCCCTTTGCTGAATCCTTTCTCCGACTCAGCCCACTTGCACCC
AAGT--------AA-TAAACAGCCTTGTTGCTCACACGAAGCCTG---TT--GGTGGTCT
CTTCACATGGATGTGCGTG-----A--CA
>LTR7C_chr15_Sltr_fr_436__chr15_2951973229520136_+_
---CAGGGCTCTGAGCCCAGGCTAAGCCATCATATGCCCTGTGA----------------
-----------------------------C-----------------------CTGCA-G
TATACATCCAGATGGC------------------------------------CTGAAGCA
ACT--GAAGAACCACCAAAGA---------------------------------------
------------------------------------T-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATTCCACCATTGTGATTTGTTCCTGCCCCACCCCAACTAATCAATCG-------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TA--GTGACATTCCTCC-CCTGGACAATGAGT-----
----CTCA------------AAATCTACCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------CTG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCTGTAAGAGAT-AA-CC
ACC-TTTAACTGTAATTTTCCACTACCTACCCA-AATCCTGTAA-----------AACT-
GCCCCA------------------------------------CTCAGCCCACTTGCATTC
AAGTA-------AA-TAAACAGCCTTGTTGCTCACACAAAGCCTG---TT--GGTGGTCT
CTTCACATGGATGCGCATG-----A--C-
>LTR7C_chr17_Sltr_521__chr17_6812245168122890__
TGTCAGGCCGCTGAGCCCAAGCTAAGCCATCGTAACCCCTGTGA----------------
-----------------------------T-----------------------CTGCAGG
TATTCGTCCAGGTGGC------------------------------------CTGGAGCA
ACT--GAAGAACCACCAAAGA---------------------------------------
------------------------------------T-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATTCCACCATGGTGATTTGTTCCTGCCCCACCCCAACTAATCAACTG-------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------GCC--------TT--GTGACATTCCTCC-CCTGGACAATGAGT-----
----CTCA------------TGATCTCCCC-AT---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------CTG----CACCTTGTG--------------
---------------------------AC-CCCTGCCC--TGTCTGCAAGAGAT-AA-CT
ACC-TTTAACTGTAATTTTCCACCACCTACCCA-AATCCTATAA-----------AGCT-
GCTCCACCC-C---ATCTCCCTTTGCTGACTCTCTTTGTGGACTCAGTCCACTTGCACCC
AAGTG-------AA-TAAACAACCTTGTTGCTCACACAAAGCCTG---TT--GGTGGTCT
CCTCACATGGACATACGTA-----A--C-
>LTR7C_chr6_Sltr_1244__chr6_2812222228122646__
TGTCAGGCCTCTGA---CAAACTAAGCCATCATAGCCCCTGTGA----------------
-----------------------------C-----------------------CGCCACG
TATACATCCAGATGAC------------------------------------CTGGAGCA
ACT--GAAGAACCACAAAAGA---------------------------------------
------------------------------------T-----------------------
---G--------------------------------------------------------
----------------------------------------------------------GC
ATTCCACCATTGAGATTTGTTCCTGCCCCACCCCAACTAATCAATCG-------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGACATTCCCCC-CCCCGACAGTGAGT-----
----CTCA------------TGATCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------CAG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCCACAAGAGAT-AA-CC
ACC-TTTAACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACT-
GCCCCACCC-C--TATCTCCCTTTGCTGACTCTCTTTTTGGACTCAGCCCACTTGCACCC
AAGTG-------AA-TAAACAGCCTTGTTGCTCACACAAAGCCTG---TT--GGTGGTCT
CTTCACACAGACTCACTTG-----A--C-
>LTR7C_chr8_Sltr_1414__chr8_8708204087082447_+_
-GTCAGGCCTCTGAGCCCAAGCTAAGCCATCATCACCCCTGTGA----------------
-----------------------------C-----------------------TTGCACG
TATACATCCAGATGAC------------------------------------CTGGAGCA
ACT--GAAGAACCAC-AAAGA---------------------------------------
------------------------------------T-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATTTCACCATTGTGATTTGTTCCTGCCCCACCCCAATTAATCAATCG-------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGACATTCCCCC-C--GGACAATGAGT-----
----CACA------------TGATCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------CTG----CACCTTGTG--------------
---------------------------AC-CCACACCCC-TGCCCGCAAGAGAT-AA-CC
ACC-TTTAACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACT-
GCCCCACCC-C--TATCTCCCTTTGCTGACTATTTTTTTGGACTCAGCCCACTTGCACCC
AAGTG-------AA-TAAACAGCCTTGTTGCTCACACAAAGCCTG---TT--GGTGGTCT
CTTCACAGGGATGTGCATG-----A--CA
>LTR7C_chr17_Sltr_496__chr17_1392856613929002__
TGTCAGGCCTCTGAGCCCAAGCTAAGCCATCATAACCCCTGTGA----------------
-----------------------------C-----------------------CTGCCCG
TATACATCCAGATAGC------------------------------------CTGAAGCA
ACT--GAAGAATCAAAAAAGA---------------------------------------
------------------------------------T-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATTCCACCATTGTGATTTGTTCCTGCCTCACCCTAACTAGTCAATCG-------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGTATCCCT-CC-CCTGGACAATGAGT-----
----CTCA------------TGATCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GTG----CACCTTGTG--------------
---------------------------AC-CC-TGTCCC-TGCCTGCAAGAGAT-AA-CC
ACC-TTTAACTGTAATGTTCCACTGCCTACCCT-AATCCTATAA-----------AACT-
GCCCCACCC-T--TATCTCCCTTTGCCCACTCCTTTTTCAGATTCAGCCCACTTGCACCC
AAGTG-------AA-TAAACAGCCTCGTTGCTCACACAAAGCCTG--TTT--GGTGGTTT
CTTCACACGGACGCGCGTA-----A--C-
>LTR7C_chr19_Sltr_588__chr19_4255735642557790_+_
-GTCAGGCCTCTGAGCCCACGCTAAGCCATCATAA--CCTGTGA----------------
-----------------------------C-----------------------CTGCACG
TATACATCCAGATGGC------------------------------------CTGGAGCA
ACT--GAAGAACCACAAAAGA---------------------------------------
------------------------------------T-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
AGTCCACCGTTGTGATTTGTTCCTGCCGCACCCTAACTAATCAATTG-------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGACATTCC-CC-CCCGGACAATGAAT-----
----CTCA------------TGATCTCTCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------GTG----CACCTTGTG--------------
---------------------------AC-CC-GCCCCC-TGCCCACAAGAGAT-AA-CT
ACC-TTTAACTGTAATTTTCCACTACCTACCCA-AATCCTGTAA-----------AACT-
GTCCCACCC-C--CATCTCCCTTTGCTGACTCCTTTTTCAGATTCAGCCCACTTGCACCC
AAGTG-------AA-TAAACAGCCTCGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGTGCGTA-----A--CA
>LTR7C_chrX_2ltr_int_fr_1533__chrX_153101038153101476__
TGTCAGGCCTCTGAGCCCAAGCTAAGCCATCATAACCCCTGTGA----------------
-----------------------------C-----------------------CTGCACA
TATACATCCAGATGGC------------------------------------CTGGAGCA
ACT--GAAGAACCACAAAACA---------------------------------------
------------------------------------T-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATTCCACCATTGTGATTTGTTCCTGCCCCACCTTAACTAATCAATTG-------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGACATTCCTCC-CCTGGACAATGAGT-----
----CTCA------------GGAGCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCTCCCC-TGCTAACAATAGAT-AA-AC
ACC-TTTAACTGTAATTTTCCACTGCCTACCCA-AGTCCTTTAA-----------GACT-
GCCCCTCTC-C--TATCTTCCTTTGCTGACTCCTTTCTCGGACTCAGCCCACTTGCACCA
AAGTG-------AA-TAAACAGCCTCACTGCTCACACAAAGCCTG--TTT--GGTGGTCT
GTTCACATGGACGTGTGTA-----A--C-
>LTR7C_chr2_Sltr_775__chr2_94764849476913__
TGTCAGGCCTCTGAGCCCAAGCTAAGCCGTCATAA--CCTGTTA----------------
-----------------------------C-----------------------CTGCACG
TATACATCCAGGTGGC------------------------------------CTGGAGCA
ACT--GAAGAACCACAAAAGA---------------------------------------
------------------------------------T-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATTCCACCATTGTGATTTGTTCCTGCCCCACCCTAACTAATCAATCG-------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGGCATTCCTCC-CCTGGACAATGAGT-----
----CTCA------------GGAGCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------A---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCTCCCC-TGCTAACAATAGAT-AA-CC
ACC-TTTAACTGTAATTTTCCACTACCTACCCA-AATCCTATAG-----------TACT-
GCCCTA--C-C--CATCTCCCTTTGCT------CTTTTCAGACTCAGCCCACTTGCACCC
AAGTG-------AA-TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACGTGGACGCGCCTA-----A--C-
>LTR7C_chr13_Sltr_360__chr13_5567154955671987__
TGTCAGGCCTCTGAGCCCAAGCTAAGCCATCATAACCCCTGTGA----------------
-----------------------------C-----------------------TTGCACG
TATACATCCAGATGGC------------------------------------CTGGAACA
ACT--GAAAAACCACAAAAGA---------------------------------------
------------------------------------T-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ACTCCACCATTGTGATTTGTTCCTTCCCCACCCTAACTAATCAATCG-------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGACATTCCTCC-CCTGGACAATGAGT-----
----CTCA------------GGAGTTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------GAG----CACCTTGTG--------------
---------------------------AC-ACCCTCCCC-TGTTAACAATAGAT-AA-CC
ACC-TTTAACTGTAATTTTTCACTGTCTACCCA-AGTCATATAA-----------GACT-
GCCCCTCTC-C--CATCTTCCTTCGCTGACTCCTTTTTCAGACTCAGTCCCCCTGCACGC
CGGTG-------AT-TAAAAAGCGTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCATGTA-----A--C-
>LTR7C_chr1_Sltr_fr_34__chr1_2061228920613001_+_
-GTCAGGCCTCTGAGCCCAAGCTAAGCGGTCTTAACCCCTGTGA----------------
-----------------------------C-----------------------CTGCACA
TATACATCCAGATGGC------------------------------------CTGGAGCA
ACT--GAAGAACCACAAGAGA---------------------------------------
------------------------------------T-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATTCCACCATTGTGATTTGTTCCTTCCCCACCCCAACTAACCAATCG-------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGACATTCCACC-CC--GACAATGAGT-----
----CTCA------------CGGTCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------CTG----CACCGTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCCACAAGAAAC-AA-CC
CCC-TTTAACTGTAATTTTCCATTACCTACCCA-AATCCTATAA-----------AACT-
GCCCCACCC-T--GATCTCCCTTTGCTGACTCTCTTTGCAGACTCAGCCTGCCTGCACCC
AGGTG-------AC-TAAAAAGCTTTATTACTCACACAAAGCCTG--TT---GGTGGTCT
CTTTACACAGACGTGCGTG-----A--CA
>LTR7C_chr14_Sltr_fr_404__chr14_5002852050028938_+_
-----GGTCTCTGAGCCTGAGCTAAGCCATCATAACCCCTATGA----------------
-----------------------------C-----------------------ATGCATG
TATACATCCAGATGGC------------------------------------CTGGAGCA
ACT--GAAGAACCACAAAAGA---------------------------------------
------------------------------------T-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATTCCACCATTGTGATTTGTTCCTGCACCACCCCAACTAATCAATCG-------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGACATTCCCCC-CCTGGACAGTGAGT-----
----CTCA------------TGATCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------CTG----GACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCTGCAAGAGAC-CA-CC
AGC-TTTAACTGTAATTTTCCACTACCTTCCCA-AATCCTATAA-----------AACT-
GCCCCACTC-C--TATCTCCCGTTGCTGACTCTTTTTTCGGACTCAGCCTGCCTGCACCC
AGGTG-------AAATAAACAGCCTTGTTGCTCACACAAAC-CTG--TT---GGTGGACT
CTTCACGGGGACCCACGTG-----A--CA
>LTR7C_chrX_Sltr_1574__chrX_8769125787691697_+_
-GTCAGCCCTCTGAGACCAAGCTAAGCCATCATAACCCCTATGA----------------
-----------------------------C-----------------------CTGCATG
TATACATCCAGATGGC------------------------------------CTGGAGCA
ACT--GAAGAACCACAAAAGA---------------------------------------
------------------------------------T-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATTCCACCATTGTGATTTGTTCCCGCCCCACCCCAACTAATCAATCG-------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGATGTTCCTCC-C-TGGACCATGAGT-----
----CTCA------------TGATCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------CTG----CGCCTTGTG--------------
---------------------------AC-TCCCGCCCC-TGCCCACAAGAGAC-AA-CC
CCC-GTTAACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACT-
GCCTCACTC-C--TATCTCCCTTTGCTGACTCTCTTTTCAGACTCAGCCCACTTGTACCC
AAGTG-------AAATAAACAGCCTTGTTGCTCACACAAAG-CAA--CA---AGTGGTCT
CTTCACATGGACACACGTG-----A--CA
>LTR7C_chr11_Sltr_241__chr11_9744683697447224_+_
-GTCAGGCCTCTGAGCCCATGCTAAGTCATCATAACCCCTGTGA----------------
-----------------------------C-----------------------CTGCATG
TATACATCCAGAGGGC------------------------------------TTGGAGCA
ACT--GAAGAACCACAAAATA---------------------------------------
------------------------------------T-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATTCCACCATTGTGATTTGTTCCTACCCCACCCCAACTAATCAATCG-------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGACATTCCCCC-G------------------
------------------------CTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------TTA----CGCCTTGTG--------------
---------------------------AC-CCCCACCCC-TGCCCACAAGACGT-AA-CC
ACC-TTTAACTGTAATTTTCCGCTACCTACCCA-AATCCTATAA-----------AACT-
GCCCCACCC-C---ATCTCCCTTTGCTTACTCTCTTTTCAGACTCAGCCCACTTGAACCC
AAGTG-------AAATAAACATCCTTGTTGCTCACACAAAGCTTG--TT---GGTGGTCT
CTTCACACGGACATGCCGG-----A--CA
>LTR7C_chr11_Sltr_196__chr11_32115903212029_+_
-GTCAGGCCTCTGAGCCCAAGCTAAGCTATCATATCCCCTGTGA----------------
-----------------------------C-----------------------CTGCACG
TATACATCCAGATGGC------------------------------------CTGAAGCA
ACT--GAAGATCCACAAAAGAAGTGAAAATAGCC--------------------------
------------------AGTTCCTGCCTCAATTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATTCCACCATGGTGATTTGTTCCTACCCCACCCCAACTAATCAAACG-------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGACATTCCTCC-CCTGGACAACGAGT-----
----CTCA------------TGATCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------GAG----CACCTTGTG--------------
---------------------------AC-CCCTGCCCC-TGCCCGCAAGAGAA-AA-CC
CTC-TTTAACTGTAATTTTCCACTACCTACTCA-AATCCTATAA-----------AACT-
GCCCCACTC-C--TATCTCCCTTTGCTGACTCCTTTTTCAGACTCAGTCCACCTGCACCC
AGGTG-------A-TTGAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACATGCGTG-----A--CA
>LTR7C_chr11_2ltr_int_fr_206__chr11_5555943055559799_+_
-GTCAGGCCTCTGAGCCCAAG---------------------------------------
-----------------------------C-----------------------CTGCCAG
TATACATCCAGATGGC------------------------------------CTGAGACA
ACT--GAAGAACCACAAAAG-------AATGGCT--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------AAC--------TT--CTGACATTCCTTCTCCTGGACAATGAAT-----
----CTCA------------GGAGCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------AAG----CACCTTGTG--------------
---------------------------AC-TCCTGCCCC-TGCCCGCAAGAGAACAA-CC
CCC-TTTAACT--AATTTTCCACTACCTGCCCT-AATCCTATAA-----------AACT-
GCCCCATGC-C--TTTCTCCCTTTGCTGACTC--TTTTTGGACTCAGCCCACCTGCACCC
AGGTG-------A-TTCAATAGCTTTATTGCTCACACAAAACCTG--TTT--GGTAGTCT
CTTCACATGGACTCACCTG-----A--CA
>LTR7o_chr20_896877_901599_1450_KAP1_EncodeTxn_GRO4of7_7old____chr20_896877897229____1343
-GTCAGGACTCTGAGCCCAAG---------------------------------------
-----------------------------C-----------------------CTGCGCG
TATACATCCAGATGGC------------------------------------CTGATGCA
ACT--GGAGAACCACAAAAGAAGTGAAAATGGCT--------------------------
------------------GGTTCCTGCCTTAACGGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGACATTCCTTCTCCTGG--------------
----CTCC------------GTAGCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------AAG----CACCTTGTG--------------
---------------------------AC-CCCTGCCCC-TGCCCGCCAGAGAACAA-CC
CCC-TTTAACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACT-
GCCCCATCT-C--CT-------------------TTTTCAGACTCAGTCCACCTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGT-----
--TCACATGGACGTGCATG-----A--TA
>LTR7C_chr12_2ltr_int_fr_288__chr12_1746989517470313_+_
-GTCAGGCCTCTGAGTCCAAGC--------------------------------------
-----------------------------------------------------CTGCACG
TATGCATCCAGATGGC------------------------------------CTGAAGCA
ACT--GAGGAACTGCAGGAGAGGGGAAAATAACC--------------------------
------------------AATTCCTGCCTTGACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATTCTACCATTGTGATTTGTTCCTGCCCCACCCTAACTGATCAATTG-------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACT--------TT--GTGAAATTCCTTCTCCTGGACAATGAGT-----
----ATCA------------GAAGCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------GAG----CACCTTGTA--------------
---------------------------AC-CCCCGCCCC-TGCCCGCCAGAGAAAAA-CC
CCC-TTTAACTGCAATTTTCCGCTACCTACCCA-AATCCTATAA-----------AACT-
GCCCCACCC-C--TATCTTCCTTTGCTAACTCCTCTTTTGGACTCAGTCCACCTGCACCC
AGGCG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCCCACGGACATGCGTG-----A--TA
>LTR7C_chr10_Sltr_157__chr10_8316713583167555_+_
-GTCAGGCCTCTGAGCCCAAGC--------------------------------------
-----------------------------------------------------CTGCACA
TATGCATCCAGATGGC------------------------------------CTGGAGCA
ACT--GAGGAATGACAGGAGAGGTGAAAATAGCC--------------------------
------------------AGTTCCTGCCTCGACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATTCCACCATTGTGATTTGTTCCTGCCCCACCCTAACTGATCAACTG-------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------CT--GTGACATTCCTTCTCCCGGACAATGAGT-----
----ATCA------------GAAGCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------TAG----CACCTTGTA--------------
---------------------------AC-CCCAGCCCC-TGCCCACAAGAGGAAAA--C
CCC-TTTGACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACT-
GCCCCACCC-T--TATCTCCCTTTGTTGACTCCTTTTTCGGACTCAGCACGCCTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTTGTTT
CTTCACACAGATGCGTGTG-----A--CA
>LTR7C_chr4_Sltr_970__chr4_113607395113607813_+_
-GTCAGGCCTCTGAGCCCAAGC--------------------------------------
-----------------------------------------------------CTGCAGG
TACGCATTAAGATGGT------------------------------------CTGGAGCA
ACT--GAGGAACCGCAGGAGAGGTGAAAATAGCC--------------------------
------------------AGGTCCTGCCTTGACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATTCCACCATTGTGATTTGTTCCTGCCCCACCGTAACCGATCAATTG-------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------CT--GTGACATTCCTTCTCCTGGACAATGAGT-----
----ATCA------------GAAGCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------GAG----CACCCTGTA--------------
---------------------------AT-CCCTGTCCC-CGCCCGCAAGAGAAAAA-TC
CCC-TTTGACTGTAATTTTCCACTACCCACCCA-AATCCTATAA-----------AACT-
GTCCCACCC-C--TATCTCCCTTTGCTGACTCCTTTTTTGGACTCAGTCCACCTGCACCC
AGGTG-------A-CTAAAAAGCGTTACTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGATGCGCATG-----A--CA
>LTR7C_chr11_Sltr_188__chr11_23312442331664__
TGTCAGGGTTCTGAGCCCAAGC--------------------------------------
-----------------------------------------------------CTGCATG
TATACATCCAGATGGC------------------------------------CTGAAGCA
ACT--GAAGAACCACAAAAGAAGTGAAAGTAGAC--------------------------
------------------AGTTGCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATTCCACCATGGTGATTTGTTCCTGCCCCACCCTAACTAATCAATTG-------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCCTTCTCCTGGTCAATGAGT-----
----ATCA------------GAAGGTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------GAG----CACTTTGTA--------------
---------------------------AC-CCCCGCCCC-TGCCCACAAAAGAAAAA-CC
CCC-TTTAACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACT-
GCCCCACCC-C--TATCTCCCTTTGCTGACTCCTTTTTTGGACCCAGTCTGCCTGCACCC
AGGTG-------A-TTAAAAAGCTTCATTGCTCACACAAAACCTA--TTT--GGTGGTCT
CTTCACACAGAGGCGCGTG-----A--C-
>LTR7C_chr8_Sltr_1395__chr8_3958022439580641__
TGTCAGGCCTCTGAGCCCAAAC--------------------------------------
-----------------------------------------------------CTGGACG
TATACATCCAGATGGC------------------------------------CTGAGGCA
ACT--GAAGAACCACAGAAGAAGTGAAAATGGCT--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATTCCACCATTGTGATTTGTTCCTGCCCCACCCTAACTGATCAATTG-------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGAAATTCTTTCTCTTGGACAATGAAT-----
----ATCA------------GAAGCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------GAG----CACCTTGTA--------------
---------------------------GC-CTCTGCCCT-TGCCTGCAAGAGAAAAA-CC
CCC-TTTGACTGTTATTTTCCACTACCTACCCA-AATCCTATAA-----------AACT-
GCCCCACCC-C---ATCTCCCTTTGCTGACGCCTTTTTCAGACTCAGCCTGCCTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--CTT--GGTGGTGT
CTTCACACGGATGCGCGTG-----A--C-
>LTR7C_chrY_Sltr_1591__chrY_1316449313164891__
TGTCAGGCCTCTGAGCCCAAGC--------------------------------------
-----------------------------------------------------CTGTGCG
TATACATCCTGATGGC------------------------------------CTGAAG-A
ACT--GAAGAACCACAAAAGAAGTGAAAATGGCC--------------------------
------------------AGTTACTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATTCCACCATTGTGATTTGTTCCTGCCCCACTCTAACTGATCAATTG-------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--AT------------CCTGGACAATGAGT-----
----ATCA------------GAAGCTCCCC-AA---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTA--------------
---------------------------GC-CTCTGCCCC-TGACCGCAAGAGGAAAA-AC
CCC-TTTGACTGTAATTTTCCACTACCTACCC-------TATAA-----------GACT-
GCCCTACCC-C---ATCTCCCTTTGCTGACTCCTTTTTTAGCCTCAGTCTGCCTGCACCC
AAGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGTCTG--TTC--AGTGGTCT
CTTCATACAGATGCACGTG-----A--C-
>LTR7C_chr17_2ltr_int_fr_518__chr17_5546777355468176_+_
-GTCAGGCCTCTGAGCCCAAGCTAAGCCATCATATCCCCTGTGA----------------
-----------------------------C-----------------------CT-----
---------------------------------------------------------GCA
ACT--GAAGAACCACAAAAGAAGTGAAAATAGGC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATTCCACTGTTGTGATTTGTTCCCGCCCCACCCTAACTGATCAATTG-------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGACACTCCTTCTCCTGGACAGTGAGT-----
----CTCG------------GGAGCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCCACAAGAGAAAAA-GC
CCC-TTTGACTGTAATTTTTCACTACCTACCCA-AATCCTACAA-----------AACT-
GTCCCACTC-C--TATCTCCCTTTGCTGACTCCTTTTTTGGACTCAGTCCACCTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCC----------------T
CTTCACACGGACACGTGTA-----A--CA
>LTR7C_chr3_Sltr_952__chr3_8610869586109136__
TGTCAGGCCTCTGAGCCCAAGCTAAACCATCATATCCCCTGTGA----------------
-----------------------------T-----------------------CTGAACA
TATACATCCAGATGAC------------------------------------CTGAAGCA
ACT--GAAGAACCACAAAAGAAGTGAAAATAGGC--------------------------
------------------AGTTCCTGCATTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATTCCACTGTTGTGATTTGTTCCTGCCCCACCCTAACTGATCAATTG-------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------AAC--------TT--GTGACATTCCTTCTCCTGGACAATGAGT-----
----GTCA------------GAAGCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------AAG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCCACAAGAGAACAA-CC
CCC-TTTGACTATAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACT-
GCCCCACCC-C--TATCTCCCTTTGTGAACTCCTTTTTCGGACTCAGTCTGCCTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGTTCT
CTTCACATGGACGCGTGTA-----A--C-
>LTR7C_chr1_Sltr_10__chr1_115011328115011767__
TGTCAAGCCTCTGAGTCCAAGCTAAGGCATCATATCCCCTATGA----------------
-----------------------------C-----------------------CTGCATG
TATACATCCAGATGGC------------------------------------CCAAAGCA
ACT--GAAGAA-CACCAAAGAAGTGAAAATAGCC--------------------------
------------------AGTTCCGGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATTCCACCATTGTGATTTGTTCCTGCCCCACCCTAACTGATCAATTG-------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGACATTCCTTCTCCTGGACAATGAGT-----
----CTCA------------GAAGCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCCTATA--------------
---------------------------AC-CCCCACCCC-TGTCCACAAGAGAAAAC-CC
CTG-TTTGACTGTAATTTTCCACTATCTACCCA-AATCCTATAA-----------AACT-
GCCCCAC-C-C--CATCTCCCTTTGCTGACTCCTTTTTTGGACTCAGTCCACCTGCACCC
AGGTG-------A-TTAAAAAGCTTTGTTGCTCACATAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGCCAAGCATG-----T--C-
>LTR7C_chr12_Sltr_244__chr12_100582022100582464__
TGTCAGGCCTCTGAGCCCAAGCTAAGCCATCATATCCCCTGTGA----------------
-----------------------------C-----------------------CTGCACG
TATACATCCAGATGGC------------------------------------CTGAAGCA
ACT--GAAGAACCACAAAAGAAGTGAAAATAGGC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATTCCACCATTGTGATTTGCTCCTGCCCCACCCTAATTGATCAACTG-------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTCACATTCCTTCTCCTGGACAATGAGT-----
----CTCA------------GAAGTTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------AAG----CACCTTGTA--------------
---------------------------AC-TCCGGCCCC-TGCCCGCAAGGGAAAAA-CC
ACC-TTCGAC-GTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACT-
GCCCACC-C-T--TATCTCCCTTTGCTGACTCCTTTTTCAGACTCAGTCCACCTGCACCC
AGGTG-------A-TTGAAAAGCTTTCTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTAACATGGGCACGTGTG-----A--C-
>LTR7C_chr8_2ltr_int_fr_1412__chr8_8354371583544154_+_
-GTCAG-CTTCTGAGCCCAAGCTAAGCCATCATAACCCCTGTGA----------------
-----------------------------C-----------------------CTGCACA
TATACATCCAGATGGC------------------------------------CTGAAGCA
ACT--GAAGAACCAAAAAAGAAGTGAA-ATAGTC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------GC
ATTCCACTATTGTGATTTGTTCCTGCCCCACCCTAACTGATCAATTG-------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGACATTCCTTCTCTTGGACAATGAGT-----
----CTCA------------GGAGCTCCCC-AT---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------GAG----CACCTTGTG--------------
---------------------------GC-CCCTGCCCC-TGCCTGCAAGAGAAAAA-AC
CCC-TTTGACTGTAATTTTCCACTACCTACTGA-AATCCTATAA-----------AACT-
GCCCCACCC-C--TATCTCCCTTTGCTCACTCCTTTTTCGGACTCAGTCCGCCTGGACCC
AGGAG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACATACATA-----A--CA
>LTR7C_chr3_Sltr_949__chr3_8411548484115924__
TGTCAGGCCTCTGAGCCCCAGCTAAGCCATCATATCCCCTGTGA----------------
-----------------------------C-----------------------CTGAACA
TATACATGCAGATGGC------------------------------------CTGAAGCA
ACT--GAAGAACCACAAAAGAGGTGAAAATAGTC--------------------------
------------------AGTTCCTGCCTTCACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATTACACCATTGTGATTTGTTCCTGCCCTACCCTAACTGATCAATTG-------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGGCATTCCTTCTCCTTGACAGTAACT-----
----CTCA------------GGAGCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCCACAAGAGAA-CA-AC
ACC-TTTGACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACT-
GCCCCACTC-C--TAACTCCCTTTGCGGACTCCTTTTTCGGTCTCAGTCCTCCTGCACCC
AGGTG-------A-TTAAAAAGGTTTATTGCTCACACAAAGGCTG--TTT--GGTGGTCT
CTTCATGTGGACACACATA-----A--C-
>LTR7C_chr12_Sltr_286__chr12_1472489114725330__
TGTCAGGCCTCTGAGCCCAAGCTAAGCCATCATATCACCTGTGA----------------
-----------------------------C-----------------------CTGCACA
TATACATCCAGATGAC------------------------------------CTGAAGCA
ACT--GAAGAACCACAAAAGAAGTGAAAATAGTC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ACACCACCACTGTGATTTGTTCCTGCCCCACTCTAACTGATCAATGG-------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGACATTCCTTCTCCTGGACAATGAAT-----
----CTCA------------GGAGCTCCCC-AG---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACCCC-TGCCCGCAAGAGAAAAA-CC
CCC-ATTAACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACT-
GCCCCACCC-C--TACCTCCCTTTGCTGACTCCTTTTTC--ACTCAGTCCACCTGCACCC
AGGAG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACACACGTA-----A--C-
>LTR7C_chr19_Sltr_fr_614__chr19_95822039582638_+_
-GTCAGGCCTCTGAGCCGAAGCCAAGCCATCAGACTCCCTGTGA----------------
-----------------------------C-----------------------CTGCACG
TATACATCCAGATGGC------------------------------------CTGAAGCA
ACT--GAAGAACAACAAAAGAAGCGAAAATAGCT--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATTCCACCATTGTGATTTGTTCCTGCCCCAACCTAACTGATCAATTG-------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGACATTCCTTCTCCTGGACAATGAAT-----
----CTCA------------GGAGCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AT-CCCCGCCCC-TGCCCGCAAGAGAACAA-CC
TCC-TTTAACTGTAATTTTCCACTATCTACCCA-AATCCTATAA-----------AACT-
GCCCGACCC-C--TATCTCCCTTTGCTGACTCCTTTTCTGAACTCAGTCTGCCTGCACCC
AGGTG-------A-TTAAAAG-CTTTATTGCTCATACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACGCAC-------------
>LTR7C_chr7_Sltr_1342__chr7_4676923346769677_+_
-GTCAGGCCTCTGGGCCCAAGCTAAGCCATCATATCATCTGTGA----------------
-----------------------------C-----------------------CTGCACG
TATACATACAGATGGC------------------------------------CTGAAGCA
ACT--GAAGAACCACAAAAGAAGCGAAAATAGCC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATTCCACCATTGTGATTTGTTCCTGCCCCACCCTAACTGATCAATTG-------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TC--GTGACATTCCTTCTCCTGGACAATGAAT-----
----CTCA------------GGAGCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------GAG----CACCTTGTG--------------
---------------------------AC-CCCTGCCCC-TGCCCACAAGAGAACAA-CC
CAC-TTTAACTGTAATTTTCCACTACTTACCCA-AATCCTATAA-----------AACT-
GTCCCACCC-C--TATCTCCCTTTGCCGACTCCTTTTTTGGACTCAGCCTGCCTGCACCC
AGGTG-------A-TTAAAAATCTTCATTGCTCACACAAAGTCTG--TTT--GGTGGTCT
CTTCACATGGACGCATAAC-----A----
>LTR7C_chr2_Sltr_705__chr2_204270464204270905__
TGTCAGGCCTCTGAGCCCAAGCTAAGCCATCATATCCCTTGTGA----------------
-----------------------------C-----------------------CTGCATA
TATACATCCAGATGGC------------------------------------CTGAAGCA
ACT--GAAGAACCACAAAAGAAGTGAAAATAGCC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATTCCACCATTGTGATTTGTTCCTGCCCCACCCTAACTGATCAGTTG-------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGACATTCCTTCTCCTGGACAATGAAT-----
----CTCA------------GGAGCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------AAG----CACCTTGTG--------------
---------------------------AT-CCCTGCCCC-TGCCTGCAAGAGAACAA-CC
CCA-TTTAACTGTAATTTTCTGCTACCTACCCA-AATCATATAA-----------AACT-
GCCCCACCT-C--TGTCTTCCTTTGCTGACTCATTTTTTGGACTCAGCCCAACTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCAACCAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACTCAC-------------
>LTR7o_chr6_29245477_29252808_2475_KAP1_EncodeRepressed_C_7old___chr6_2925236729252808___1429
TGTAAGGCCTCTGAGACCAAGCTAAGCCATCATATCCCCTGTGA----------------
-----------------------------C-----------------------CTGCACA
TATACATCCAGATGGC------------------------------------CTGAAGCA
ACT--GAAGAACTACAAAAGAAGTGAAAATAGCC--------------------------
------------------AGTTGCTGCCTTAACTTAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATTCCACCATTGTGATTTGTTCCTGCCCCACCCTAACTGATCAATTG-------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------CT--GTGACATTCCTTTTCCCGG--------------
----CTCA------------GGAGCTCCCC-AT---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGCG--------------
---------------------------AC-TGCTGCACC-TGCATGCAAGAGAACAA-CC
CCC-TTTAACTATAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACT-
GCCCCACCC-C--TATCTCCCTTTGCTGACT--TCTTTTGGACTCATTCTGCCTATGCCC
AGGTG-------A-TTAAGAAGCTTTATTGCTCACACAAAGCCTG--TCT--GGTGGTCT
CTTCACGTGGACACACATA-----A----
>LTR7C_chr13_Sltr_365__chr13_6213174962132166_+_
-GTCAGGCCTCTACGTCCAAG---------------------------------------
-----------------------------C-----------------------CTGCACA
TGTACATCCAGATGGC------------------------------------CTGAAGCA
ATT--GAAGAACCACAAAAAAAGTGAA-ATAGCC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATTCCACCATTGTGATTTGTTCCTGCTCCACCCTAACTGATCAATTG-------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGACATTCCTTCTCCTGGACAATGAGT-----
----CTCA------------GAATCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACTTTGTG--------------
---------------------------AC-CCTTGCCCC-TGCCCACAAGAAAA-AA-AA
CCC-TTTAACTGTAATTTTCCATTACCTACCCA-AATCCTATAA-----------AACT-
GCCCCACCC-C---ATCTCCCTTTGCTGACCTCTTTTTCAGACTCAGTCCGCCTGCACCC
AGGTT-------A-TTAAAAAGCTTTATTGCTCACGCAAAGCCTG--TTT--GGTGGTCT
CTTCACATAGACACATGTG-----A--CA
>LTR7C_chr16_Sltr_489__chr16_7841389378414334_+_
-GTCAGGCCTCTGAGCCCAAGCTGAGCCGTCATAACCCCTGTGA----------------
-----------------------------C-----------------------CTGCACA
TATACATCCAGATGGC------------------------------------CTGAAGCA
ACT--GAAGAACTACAAAAGAAGTGAA-ATAGCC--------------------------
------------------AGTTCTTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATTCCATCAGTGTGATTTGTTCCTGCCCCACCCTAACTGATCAGTTG-------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGACATTCCTCTTCCTGGGCAGTGAGT-----
----CTCA------------GGAGCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCTGCAAGACAA-AA-CC
CCC-TTTAACTGTAATTTTCCACTACCCACCCA-AATCCTGTAA-----------AACT-
GCCCTACAC-C---TTTTCCCTTTGCTGACCCCTTTTTCAAACTCCGTCTGCCTGCACTC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACACGTGTA-----A--CA
>LTR7C_chr4_Sltr_1047__chr4_2349642123496860_+_
-GTCAGGCCTCTGAGCTCAGGCTAAGCCATCATATCCCCTGTGA----------------
-----------------------------C-----------------------CTGCACG
TGTACATCCAGATGGC------------------------------------CTGAAGCA
ACT--GAAGAACCACAAAGGAAGTGAA-ATAGCC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATTCCACCATTGTGATTTGTTCCTGCCCCACCCTAACTGATCAGTTG-------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGACGTTCCTTCTCCTGGACAATGAAT-----
----CTCA------------GGAGCTCCCC-AT---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------G---------GAG----CACCTTGTG--------------
---------------------------GC-CCCTGCCCC-TGCCCGCAAGAGAA-AA-CC
TTC-TTTAACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACT-
GCCCCACCC-C---GTCTCCCTTTGCTGACTCCTTTTTTGGACTCAGTCTGCCTGCACCT
AGTTT-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
TTTCACATGGACACGAATA-----A--CA
>LTR7C_chr8_Sltr_1373__chr8_115709936115710372_+_
-GTCAGGCCTCTGAGCCCAAGCTAAGCCATCATATCCCCTGTGA----------------
-----------------------------C-----------------------CTGCACG
TATTCATCCAGATGGC------------------------------------CTGAAGCA
ACT--GAAGAACCACAAAAGAAGTGAA-ATAGCC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATTCCACCATAGTGATTTTTTCCTGCCCCACCCTAACTGATCAATTG-------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGACATTCCTTCT---GGACAACGAAT-----
----CTCA------------GGAGCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------GAG----CAACTTGTG--------------
---------------------------AC-CCCTGCCCC-TGCCCGCAAGAGAA-AA-CC
CCC-TTTAACTGTAATTTTCCACTACCTACCCA-AATCGTATAA-----------AACT-
GCCCCACCC-C---ATCTCCCTTTGCTGACTCCTTTTTCAGACTCAGTCTACCTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACAAAAAGCCTG--TTT--GGTGGTCT
TTTCACATGTACACGTGTA-----A--CA
>LTR7C_chr2_Sltr_685__chr2_175199644175200086__
TGTCAGGCCTCTGAGCCCAAGCTAAGCCATCATAACACCTGTGA----------------
-----------------------------C-----------------------CTGCACG
TGTACATCCAGATGGC------------------------------------CTGAAGCA
ACT--GAAGAACCACAAAAGAAGTGAA-ATAGCC--------------------------
------------------AATTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATTCCACCATTGTGATTTTTTCCTGCCCCACCCTAACTGATCAATTG-------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGACATTTCTTCTCCTGGACAATG--------
----------------------AGCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------TC-CCCCACCGC-TGCCCGCAAGAGAA-AA-CC
CCC-TTTAACTGTAATTTTCCACTAC-TACCCA-AATCCTATAA-----------AACT-
GCCCTGCCC-C---AGCTCCCTTTGCTGACCCCTTTTTTGGACTCAGTCTGCCTGCACCC
AGATG-------A-ATAAAAAGTTTTATTGCTCACACAAAGCCTA--TCT--GGTGGTCT
CTTCACATGAATGCACATA-----A--C-
>LTR7C_chr3_Sltr_926__chr3_4639296446393402__
TGTCAGGCCTCTGAGTCCAAGCTAAGCCATCATATCCTCTGTGA----------------
-----------------------------C-----------------------CTGCACA
TATACATCCAGATTGC------------------------------------CTGAAGCA
ACT--GAAGAACCACAAAAGAAGTGAAAATAGGC--------------------------
------------------CGCTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATTCCACCATTGTAATTTGTTCCTGCCCCACCCCAACTGATCAATTG-------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGACATTCCTT---CTGGACAGTGAGT-----
----CTCA------------GGAACTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------GAG----CACCTTGTG--------------
---------------------------AC-CCCTGCCCT-TGCCTGCAAGAGGACAA-CC
CCC-TTTAACTGTAATTTTCCATTACCTACCCA-AATCCTATAG-----------AACC-
ACCCCAACC-C--TAACTCCCATTGCTGACTCCTTTTTCAGACTCAGTCTGCCTGCACCT
ACATG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCATATGGATGCGCATA-----A--C-
>LTR7C_chr7_Sltr_1322__chr7_146688334146688762__
TGTCAGGCCTCTGAGCCCAAGCTAAGCCATCATATCC--CGTGA----------------
-----------------------------C-----------------------CTGCACG
TATACATCCAGATGGC------------------------------------CTGAAGCA
ACT--GAAGAACGACAA---AAGTGAAAATAGCC--------------------------
------------------AGTTCCTGTCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATTCCACCATTGTGATTTGCTCGTGTCCCACCTCAACTGATCAATTT-------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGACACTCCTTCTCCTGGACAATGAAT-----
----CTCA------------GGA-------------------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------------------G----CACCTTGTG--------------
---------------------------AC-CCCTGCCCC-TGCCCACAAGAGAACAA-CC
CCC-TTTAACTGTAATTTTCTACTACCTACCCA-AATTCTATAA-----------AACT-
GCCCCACCC-C--TATCTCCCTTTGCTGACTCCTTTTTCAGAGTCAGTTGGCCTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TGT--GGTGGTCG
CTTCACATGGATGCGCATA-----A--C-
>LTR7C_chr1_Sltr_19__chr1_168865665168866103__
TGTCAGGCCTCTGAGCCCAAACTAAGCCATCATAACTCCTGTGA----------------
-----------------------------C-----------------------ATGCAAG
TATACATCCAGATGGC------------------------------------CTGAAACA
ACT--GAAGAACCACAAAAGAAGTGAAA-TAGCC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATTTCACTATTGTGATTTGTTCCTGCCCCACCCTAACTGATCAACTG-------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------AT--GTGACATTCCTTCTCCTGGACAATGAGT-----
----CTCA------------GGAGCTCCAC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------GAG----CACCTTGTG--------------
---------------------------AC-CCCTGCCTC-TGCCCACAAGAGAA-AA-GC
CCC-TTTAACTGTGATTTTCCACTACCTACCCA-AATCCTATAA-----------AACT-
GCCCTACCC-C---ATCTCCCTTTGCTGACCCCTTTTTCAGACTCAGTCCTCCTGCACCC
AG-TA-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGATGTGCAGA-----A--C-
>LTR7C_chr12_Sltr_306__chr12_5473620354736640_+_
-GTCAGGCCTCTGAGCCTAAGCTAAGCCATCATAACCCCTGTGA----------------
-----------------------------C-----------------------CTGCACG
GATACATCCAGATGAC------------------------------------CTGAAGCA
ACT--GAAGAACCACAAAAGAAGTGAAA-TAGTC--------------------------
------------------AATTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATTCTACCACTGTGATTTGTTCCTGTCCCACCCTAACTGATCAATTG-------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------AGC--------TT--GTGACATTCCTTCTCCTGGACAATGAGT-----
----CTCA------------GGAGCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACCCC-TACCCTCAAGAGAA-AA--C
CCC-TTTAACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACT-
GGCCCACCC-C---ATCTCCCTTTGCTGACTCCTTTTTCAGACTCAGTCTGCCTGCACCC
AGGGA-------A-TCAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGCCGTCT
CTTCACACAGACGTGTGTA-----A--CA
>LTR7C_chr15_Sltr_fr_454__chr15_9277972092780156__
TGTCAGGCCTCTAAGCCCAAGCTAAGCCATCATAACCCCTGTGA----------------
-----------------------------C-----------------------CTGCATG
TATACATCCAGATGAC------------------------------------CTGAAGCA
ACT--GAAGAACCACAAAAGAAGCAAAA-TAGGC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATTCCACCCTTGTGATTTGTTCCTGCTCCACCCTAACTGAACAACTG-------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TC--GTGACATTCCTTCTCCTGGAC--TGAGT-----
----CTCA------------GGAGCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------AAG----CACCTGGTG--------------
---------------------------AC-CCCTGCCCC-TGCCCACAAGAGAA-AA--C
CCC-TTTAACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACT-
GGCCCACCC-C---ATCTCCCTTTGCTGACTCCTTTTTTGGACTCAGTCGGCCTGCACCC
AGATG-------A-TTAAAAGGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTTACACGGACGTGCGTA-----A----
>LTR7C_chr14_Sltr_387__chr14_2179622921796666_+_
-GTCAGGCCTCTGAGCCTAAGCTAAGCCATCATAACCCCTGTGA----------------
-----------------------------C-----------------------CTGCACG
TATACATCCAGATGGC------------------------------------CTGGAGCA
ACT--GAAGCACCACAAAAGAAGTGAAA-TAGTC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATTCCACTATAGTGATTTGTTCCTGCCCCACCCTAACTGATCAATTG-------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------AAC--------TT--GTGACATTCCTTCTCCTGGACAATGAGT-----
----CTCA------------GGAGTTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------AAA----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCCGCAAGAGAA-AA-CC
CCC-TTTAACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACT-
GCCCCACCC-C---ATCTCCCTTTGCTGACTCCTTTTTAGGACTTAGTCTGCCTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAACCTG--TTT--GGTGGTCT
CTTCACA--GATGCGCATA-----A--CA
>LTR7C_chr17_Sltr_503__chr17_4314832843148734__
TGTCAGGCCCCTGAGCCCAAGCTAAGCCATCATAA-CCCTGTGA----------------
-----------------------------C-----------------------CTGCACA
TATACATCCAGATGGC------------------------------------CTGAAGCA
ACT--GAAGAACCATAA---ACGTGAAA-TAGCC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATTCCACCATTGTGATTTGTTCCTGCTCCACCCTAACTGATCAATTG-------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGACATTCCTTCTCCTGGACAATGAGT-----
----CTCA------------GGAGCTCCTC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------AAG----CACCTTGTT--------------
---------------------------AC-CCCCACCCC-TGCCCACAAGAGAA-AA-CG
CAC-GTTAACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACT-
GCCCCACCC-C---ATCTCCTTTTGCTGACTCC---------------------------
AGGTG-------A-TTAAAAAAC--TATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGATGCGCATA-----A--C-
>LTR7C_chr2_Sltr_fr_719__chr2_223462365223462801_+_
-GTCAGGCCTCTGAGCCCAAGCTAAGCCATCATAACCCCTGTGA----------------
-----------------------------C-----------------------CTGCACG
TATACATCCAGATGGC------------------------------------CTGAAACA
ACT--GAAGAACCACAAAAGAAGTGAAA-CAGCC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATTCCACCATTGTGATTTGTTCCTGCCCCACCCTAACTGATCAATGG-------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGACATTCCTTCTCCTGGACAATGAGT-----
----CTCA------------GGAGCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------AAG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCCGCAAGAGAA-AA-CC
ACC-TTTAACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACT-
GGCCCACCC-C---ACCTCCCTTTGCTGACTCCTTTTTCAGACTCAGTCCACCTGCACTC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGATGCACGTA-----A----
>LTR7C_chrX_Sltr_1556__chrX_4606701246067440_+_
-GTCAGGCCTT-----------TAAGCCATCATAACCCCTGTGA----------------
-----------------------------C-----------------------CTGCACG
TATACATCCATATGGC------------------------------------CTGAAGTA
ACT--GAAGAACCACAAAACAAGTGAAA-TAGCC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---A--------------------------------------------------------
----------------------------------------------------------AC
ATTCCACCATTGTGATTTGTTCCTGCCCCACCTTAACTGATAAATTG-------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATC--------TT--GTGACATTCCTTCTCCTGGACAATTAAT-----
----CTTA------------GGAGCTCTCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------AAG----CACCTTGTA--------------
---------------------------AC-CCCTGCCCC-TGCCCGCAAGAGAA-AA-CC
CCC-TTTAACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACT-
GCCCTACCC-C---ATCTCCCTTTGCTGACTCCTTTTTCGGACTCAGTCCACCTGCACTC
AAGTG-------A-TTAAAAAGCTTTATCGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGTTGCACGTA-----A--CA
>LTR7C_chr12_Sltr_300__chr12_3906025539060695_+_
-GTCAGGCTTCTGAGCCCAAACTAAGCCATCAGATCCCCTGTGA----------------
-----------------------------C-----------------------CTGCACC
TATACATCCAGATGGC------------------------------------CTGAAGCA
ACT--GAAGAACCACAAAGGAAGTGAAA-TAGCT--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATTCCACCATTGTGATTTGTTCCTGCCCTGCCCTAACTGATCAATTG-------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGACATTCGTTCTCCTGGACAATGAAT-----
----CTCA------------GGAGCTCCCC-AA---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------AAG----CACCTTGTG--------------
---------------------------AC-TCCCGCCCC-TGCCAACAAGAGGACAA-CC
CCC-TTTAATTGTAATTTTCCACTACCTACCCA-AATC--ATAA-----------AACT-
GCCCCACCC-C---ACATCCCTTTGCTGACTCCTTTTTTGGACTCAGTCCTCCTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGATCT
CTTCACACGGACGTGTGTA-----A--CA
>LTR7C_chr19_Sltr_fr_556__chr19_1427595814276392_+_
---------TCTGAGCCCAAGCTAAGCCATCATAACCCCTGTGA----------------
-----------------------------C-----------------------CTGCACG
TATACATCCAGACGGC------------------------------------CTGAAGCA
ACT--GAAGAACCACAAAAAAAGTGAAA-TAGTC--------------------------
------------------AATTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATTCCACCATTGTGATTTGTTCCTGCCCCACCCTAACTGATCAATTG-------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACT--------TT--GTGACATTCCTTCTCCTGGACAATGAGT-----
----CTCA------------GGAGCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCCACAAGAGAA-AA-CC
CCG-TTTAACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACT-
GCCCCACCC-----------CTTTGCTGACTCCTTTTTTGGACTCAGTCCGCCTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTTACAGAAAGCCTG--TTT--GGTGGTCT
CGTCATATGGACGCATGTA-----A--TA
>LTR7C_chr2_Sltr_fr_677__chr2_159298190159298625_+_
---TAGGCCTCTGAGCCCAAGCTAAGCCATCATAACCCCTGTGA----------------
-----------------------------C-----------------------CTGAGCG
TATACATCCAGATGGC------------------------------------CTGAAGCA
ATT--GAAGAACCACAAAAGAAGTGAAA-TAGTC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATTCCACCATTGTGATTTGTTCCCACCCCACCCTAACTGATCAATTG-------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGACGTTCCTTCTCCCGGACAATGAAT-----
----CTCA------------GGAGTTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCCACAACAGAACAA-CC
CCC-TTTAACTCTAGTTTTCCACTACCTACCCA-AATCCTATA--------------CT-
GCCCCACCC-C---ATTTCCCTTTGCTGACTCCTTTTTCGGACTCAGTCCACCTGCACTC
AAGTG-------A-TTAAAAAACTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCCAGTA-----A--CA
>LTR7C_chr7_Sltr_fr_1296__chr7_111850497111850929_+_
--------CTCAGAGCCCAAGCTAACCCATCATACCCCCTGTGA----------------
-----------------------------C-----------------------CTGCACA
TATATAAACAGATGGC------------------------------------CTGAAGCA
ACT--GAAGAACCACAAAATAAGTGAAA-TAGTC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATTCCACCACTGTGATTTGTTCCTGCCCCACCCTAACTGATCAATTG-------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGACATTCCTTCTCCTGGACAATGAGT-----
----CTCA------------GAAGCTTCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------CAG----CACCTTGTG--------------
---------------------------AC-CCCCACCCC-TGCCCTCAAGAGAACAA-CC
CCC-TTTAACTGTAATTTTCCATTATCTACCCA-AATCCCATAA-----------AACT-
GCCCCACCC-----ATCTCCCTTTGCTGACTCCTTTTTCGGACTCAGTCCACCTACACCG
AAGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGTGTA-----A--CA
>LTR7C_chr4_Sltr_999__chr4_138112923138113342__
TGTCAGGCCTCTGAGACCAAG---------------------------------------
-----------------------------C-----------------------CTGCACG
TATACATCCAGATGGC------------------------------------CTGAAACA
ACT--GAAGAACCACAGAAGAAGTAAAAATAGTC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATTCCACCATTGTGATTTGTTCCTGTCCCACCCTAACTGATCAATTG-------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGACATTCCTTCTCCTGGACAATGAGT-----
----CTCA------------GAAGCTCCCC-AT---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------G---------GAG----CACCTTGTG--------------
---------------------------AC-CGCCGCCCC-TGGCCGCAAGCCAACAA-CT
TTC-TTTAACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACT-
GCCCCACCC-C---ATCTCCCTTTGCTGACTCCTTTTTTGGACTCAGCCCGCCTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGCGCACACAAAGCCTG--TTT--GATGGTCT
CTTCACCCCTACGCGCGTA-----A--C-
>LTR7C_chr1_Sltr_69__chr1_246684668246685113_+_
-GTCAGACCTCTGAGGCCAAGCTAAGCCGTCATATCCCCTGTGA----------------
-----------------------------C-----------------------CCTCACG
TATACATCCAGATGGC------------------------------------CTGAAGCA
ACT--GAAGATCCACAGAATAAGTGAAAATAGTT--------------------------
------------------AGTTCCTGCCTCAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATTCCACCATTGTGACTTGTTCCTGCCCCACCCTAACTGATCAATTG-------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACT--------TT--GTGACATTCCTTCTCCTGGACAATGAAT-----
----CTCA------------GGAGCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C----------AG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCCGCAAGAGAAC-A-CC
CCC-TTTCACTGTAATTTTCCACGACCTGCCCG-AATCCTATAA-----------AACT-
GCCTCACCC-C--GATCTCCCTTTGCTGACTCCTTTTACGGACTCAGTCTGCCTGCATCC
AGGTG-------A-TTAAAA-GCTTTATTGCTCACACGAAGCCTG--TTT--GGTGGTCT
CTTCTCAAGGACGCGCATG-----A--CA
>LTR7C_chr11_Sltr_207__chr11_5632339656323837_+_
-GTTAGGCCTCTGAGACCATGCTAAGCCATCATATCCCCTGTCA----------------
-----------------------------C-----------------------CTGCAGG
TATAAATCCAGATGGC------------------------------------CTAAAGCA
ACT--GAAAAACCACAAAACAAGTAAAAATAGCC--------------------------
------------------AGTTCCTGACTTAATTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATTCCACCATTGTGATTTGTTTCTGCCCCACCCTGACTAATCAATTA-------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GCGACATTCCTTCTCCTGGACAATAAGT-----
----CTCT------------GGAGCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACCCC-TGCCCACAAGAGAACAG-CC
ACC-TTTAACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACT-
TCCCTACCC-C--TATCACCCTTTGCTGACTCCTTTTTCAGACTCAGTCTGCCTGCACCA
AGGTG-------A-TTAAAAAGCTTTATTGCTCATACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGATGCACATA-----A--CA
>LTR7C_chr13_Sltr_344__chr13_111062980111063422_+_
-GTCAGGCCTCTGAGCCCACGCTAAGCCATCATATCCCCTGTGA----------------
-----------------------------C-----------------------CTACATG
TATACATTCACATGGC------------------------------------CTGAAGCA
CCT--GAAAAACCACAAAAGAAGTGAAAATAGCC--------------------------
------------------AGTTTATGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATTCCACCATTGTGATTTGTTCCTGCCCCACCCTAACTGATCAATTG-------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------AT--GTGACATTCCTTCTCCTGGACAATGAGT-----
----CTTA------------AGAGCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACCCT-TGCCCACAAGAGAAAAA-CC
TCC-TTTAACTGTAATTTTCCACTACCTACCCA-AATCCTGTAA-----------AACT-
GCCCCTCCC-C---ATCTCCCTTTGCTGACTCCTTTTTCAGACTCAGTCAGCCTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGATGCACATA-----A--CA
>LTR7C_chr6_Sltr_1214__chr6_141829959141830399_+_
-GTCAGGCCTCTGAGCCCAAGTTAAGCCATCATATCCCCTGTGA----------------
-----------------------------C-----------------------CTGCATG
TATACATCCAGATGGC------------------------------------CTGAAGTA
ACT--GAAGAACCACAAAAGCAGTGACAATAGCC--------------------------
------------------AATTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATTCCACCATTGTGATTTGTTCCTGCCCCACCCAAACTGATCAATTG-------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGACATTCCTTCTCCTGGACAATGAAT-----
----CTC-------------AGAGCTCTCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------A---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACCCC-TGCTTGCAAGAGAAAAA-CC
ACC-TTTAACTGTAATTTTCCACTACTTACCCA-AATCCTATAA-----------CACT-
GCACCACCC-C--TATCTCCCTTTGCTGACTCCTTTTTCGGACTCAGGACACTTGCACCC
AGGTA-------A-TTAAAA-GCTTTATTGCTCACACAAAGCCTG--TTT--GCTGGTCT
CTTCAAACGGATGCACGTA-----A--CA
>LTR7C_chrY_Sltr_1593__chrY_1447526414475701__
TGTCAGGCCTCTGAGCCCAAGCTAAGCCATCATAACCCCTGTGA----------------
-----------------------------C-----------------------CTGCATG
TATACATCCAGATGGC------------------------------------CTGAAGCA
ACT--GAAGAACCACAAAAGAAGGGAAAATAGTC--------------------------
------------------AGTTCCTGCCTTAACTG-T-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATTTCACCATTGTGATTTGTTCCTGCCCCACCCTAACTGATCAATTG-------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------AAC--------TT--GTGGTATTCCTTCTCCCAGACAATGAGT-----
----CTGA------------GGAACTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------A---------GAG----CACC-TGTG--------------
---------------------------AC-CCCCACCCC-TGCCTGCAAGAGACAAC-CC
G-C-TTTGACTGTCATTTTCCACTACCTACCCA-AATCCTAGAA-----------AACT-
GCCCCACCC-C---ATCCCCCTTTGCTGACTCCTTTTTCAGACTCAGTCCACCTGCACCA
AGGTG-------A-GTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACCCGCATA-----A--C-
>LTR7C_chr19_Sltr_fr_608__chr19_58578335858275_+_
-GTCAGGCCTCTGAGCCCAGGCTAAGCCATTATATCCCCCGTGA----------------
-----------------------------C-----------------------CTGCATG
TATACATCCAGATGGC------------------------------------CTGAAGCA
GCT--GAAGAACCACAAGAGAAGTGAAAATAGCC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------TC
ATTCCACCATTGTGATTTGTTCCTGTCCCACCTTTACTGATCAATTA-------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACT--------TT--GTGACATTTCTTCTCCTGGACAATGAGT-----
----CTCA------------TGATCTCCCT-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------CAG----CACCTTGTG--------------
---------------------------AC-CCCTGCCCC-TGCCCGCAAGAGATAA--CC
ATC-TTTAACTGTAACTTTCCACTACCTACCTA-AATCCTGTAA-----------AACT-
GACCCACCC-C--TATCTCCCTTTGCTGACTCCTTTTTCGGACTCAGCCCGCCTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGTTCACATGAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACACGCATG-----A----
>LTR7C_chr3_Sltr_923__chr3_4633241846332857__
TGTCAGGCCTCTGAGCCCAAGCTAAGCCATCATAT-CCCCGTAA----------------
-----------------------------C-----------------------CTTCACG
TGTACATCCAGATGGC------------------------------------CTGAAGAA
ACT--GAAGAACCACAAAAGAAGTGAA-ATAGTG--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATTCCACCAT-GCGATTTGTTCCTGCCCCACCCCAACTGATCAATCG-------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGACACTCCTTC-CCTGGATGATAAGT-----
----CTCA------------GGATTTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------CAG----CACCTTGTG--------------
---------------------------AC-CCCCACCTC-TGCCCTCAAGAGATAA--CC
ACC-TCTAACTGTAACTTTCCACTACCTACCCA-AATCTTATAA-----------AACT-
GACCCACCC-C--TATCTCTCTTTGCTGACTCCTTTTTCAGACTCAGCCCACCTGCACCA
AGGTG-------A-TTAAAAAGCTTTATTGATAACACAAAGCCTG--TT---GGTGGTCT
CTTCACATGGATGCACATG-----A--C-
>LTR7C_chr18_Sltr_fr_547__chr18_6427533164275768__
TGTCAGGCTTCTGAGCCCAAGCTAAGCCATCATATCCCCTGTGA----------------
-----------------------------C-----------------------CTGCACG
TATACATCCAGATGGC------------------------------------CTGAAGCA
ACT--GAAGAACCACAGAAGAAGTGAAAATAGCC--------------------------
------------------AATTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATTCCACCACTGTGATTTGTTCCTGCCCCACCCTAATTGATCAATTG-------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGATATTCCTTCTCCTGGACAATGAGT-----
----CTCA------------GGAGCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------A---------GAG----TACCTTGTG--------------
---------------------------AC-CCCTGACCC-TGCCCGCAAGAGAACAA-CC
CCC-TTTAACTGTAATTTTCTATTACCTACCCA-AATCCTATAA-----------AACT-
GCCCCACCC-T--TATCTCCCTTTGCTGACTCCTTTTTCAGACTCAGTCCACCTGCACCC
AGGTG-------A-TTAAAAAGCTTTATGGCTCACACAAAGCCTG--TTT--TGTGGTCT
CTTCACATGGACGCGCA------------
>LTR7C_chr10_Sltr_131__chr10_1737696217377401_+_
-GTCAAGCCTCTGAGCCCAAGCTAAGCCATCATATCCCCTGTGA----------------
-----------------------------C-----------------------CTGCAGG
TATACATTGAGATGGC------------------------------------CTGAAGCA
ACT--GAAGAACCACAAAAGAAGTGAAAATAGCC--------------------------
------------------AATTCCTGCCTTTACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATTCCACCATCATGATTTGTTCCTGCCCCACCCTAATTAACCAGTTG-------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGACATTCCTTCTCCTGGACAGTGAAT-----
----CTCA------------GGAGCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTATG--------------
---------------------------AC-C--TGCCCC-TGCCTGCAAGAGAAAAA-AC
CCC-TTTAACTGTCATTTTCCACTACCTACCCA-AATCCTATAA-----------AACT-
GCCCCACCC-C--TCTCTCCCTTTGCTGACTCCCTTTTCGGACTTGGTCTGCCTCCACCC
AGGTG-------A-TTAAAAAGCTTTATTGTTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACACGCCTA-----A--CA
>LTR7C_chr6_Sltr_fr_1243__chr6_2431188424312317_+_
-GTCAGGCCTCTGAGCCCAAGCTAAGCCATCATATCCCCTGTGA----------------
-----------------------------C-----------------------CTGCACA
TATGCATTCAGATGGC------------------------------------CTGAAGCA
ACT--GAAGAACCACAAAAGAAGTGAAAATAGCC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATTCCACCATTGTGATTTGTTCCTGCCCCACCCTAACTGACCAATTG-------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGACATTCCTTCTCCTGGACAGTGAGT-----
----CTCA------------GGAGCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACCCC-CGCCTGCAAGAGAACAA-CT
CCC-CTTAACTGCAATTTTCCACTACCTACCCA-AATCCTGTAA-----------AACT-
GCCTCACCC-C--A-TCTCCCTTTGCTGACTCCTTTTTCGGACTCAGTCTGACTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACACG--------------
>LTR7C_chr11_Sltr_169__chr11_102911954102912394_+_
-GTCAGGCCTCTGAGCCCGAGTTAAGCCATCATATCCCCTGTGA----------------
-----------------------------C-----------------------CTGCACG
AACACATCCAAATGGC------------------------------------CTGAAGCA
ATT--GAAAAACCACAAAAGAAGTGAAAACAGCC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATTCCACCATAGAGATTTGTTGCTGCCCCACCCTAA-TGATCAATTG-------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------TCC--------TT--GTGACATTCCTTCTCCTGGACAATGAAT-----
----CTCA------------GGAGCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCTGCCCC-TGCCCACAAGAGAACAA-TC
CCC-TTTAACTGTAATTTTCCACTACCTACCCA-AATCCTGTAA-----------AGCT-
GCCCCACAC-C--TGTCTCCCTTTGCTGACTCCTTTTTCGGACTCAGTCCGCCCGTACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGCAGTCT
CTTCACACGGACACGCATA-----A--CA
>LTR7C_chr2_Sltr_728__chr2_2478498724785398_+_
-GTCAGGCCACTGAGCCCAAG---------------------------------------
-----------------------------C-----------------------CTGCACG
TATACCTCCAGATGGA------------------------------------CTGAAGCA
ACT--GAATTACCACAAAAGAAGTGAAAATAGCC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATTCCACCGTTGTGATTTGTTTCTGCCCCACCCTAACTGATCAGTTG-------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGACATTCCTTCTCCTGGACAATGAGT-----
----CTCA------------GAAGCTCCTC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GGC----CACCTTGTG--------------
---------------------------AC-CCC-------TGCCCGCAAGAGAAAAA-CC
CCC-TTTAACTGTAATTTGCCACTACCTACCCA-A-TCCTATAA-----------AACT-
GCCCCACCC-C--TATCTCCCTTTGCAGACTCCTTTTGCGGACTCCGTCTGCCTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACAGGGATGTGTGTG-----A--CA
>LTR7o_chrX_7110567_7111001_h3k27ac_EncodeRepressed_SOLO_C_7old___chrX_71105677111001___1362
TGTCAGGCCTCTGAGCCCAAG---------------------------------------
-----------------------------C-----------------------CTGCACG
TATACATCCAGATGGC------------------------------------CTGAAGCA
ACT--GAAAAACCACA----AAGTGAAAATAGCC--------------------------
------------------ACTTCCTGCCTTAATGGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ACT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGACACTCCTTCTCCTGG--------------
----CTCA------------GAAGCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACCCC-TGCCCGCAAGAGAACAA-CC
CCC-TTTAACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACT-
GCCGCACCC-C--TATCTCCCTTTGCTGACTCCTTTTTCGGACTCAGTCTGCCTGTACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACAGGGCTGCATGTA-----A--C-
>LTR7C_chr8_Sltr_fr_1416__chr8_8975583989756273_+_
-GTCAGGCCTCTGAGCCCAAGCTAAGCCATCATATACCCTGTGA----------------
-----------------------------C-----------------------CTGCACG
TATACATCCAGATGGC------------------------------------CTGAAGCC
ACT--GAAGAACCACAA---AAGTGAAAATAGCC--------------------------
------------------AGTTCCTACCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATTCCACGATTGCGATTTGTTCCTGCCCTTCCCTAACTGATCAATGG-------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGACACTCCTTCTCCTGGACAATGAGT-----
----CTCA------------GGAGCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACCCC-TGCCCGCAAGAGAAAAA-CC
CCC-TTTAACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACT-
GCCTCACCC-C--TATCTCCCTTTGCTGACTCCTTTTTCGAACTAAGTCGGCCTACACCC
ACATG-------A-TT-AAAAGCTTTATTGCTCACCCAAAGCCTG--TTT--GGTGGTCT
CTTCACACTGACGCGCGT-----------
>LTR7C_chr16_Sltr_fr_472__chr16_3160905731609479_+_
---CAGGCCTCTGAGCTCAAG---------------------------------------
-----------------------------C-----------------------CTGCATG
TATACATCTAAATGGC------------------------------------CTGAAGCA
ACT--GAAGAACCACAAAAGAAGTGAAAATAGTC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATTCCACCATTGTGATTTGTTCCTGCCCCACCTTAACTGATCAATTA-------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGACATTCCTTCTCCTAGACAATGAGT-----
----CTCA------------GAACTTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------AAG----CACCTTGTA--------------
---------------------------AC-CCCTGCCCC-TGCCCGCAAGAGAATAA-CC
CCC-TTTAACTGTAATTTTCCACTACCTACCCA-AATCCTGTAA-----------AACT-
GCCCCACTC-C---ATCTCCCTTTGCTGACTCCTTTTTCGGACTCAGTCTGCCTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTACTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACGCACATG-----A--CA
>LTR7C_chrX_Sltr_1575__chrX_9070465090705091_+_
-GTCAGGCATCTGAGCCCAAGATAAGCCATCATATCCCCTGTGA----------------
-----------------------------C-----------------------CTGCATA
TATACATCCAGATGGC------------------------------------CTGAAGCA
ACT--GAAGAATCACAAAAGAAGTGAAAATAGTC--------------------------
------------------AGTTCCTGCCTTAACTGTT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ACTCCACCATTGTGATTTGTTCCTGCCCCACCCTAACTGATCAATTA-------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGACATTCCTTCTCCTAGACAATGAGT-----
----CTCA------------GAACCTCCTC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAA----CACCTTGTA--------------
---------------------------AC-CCCTGCCTC-TGCCTGCAAGAAAATAA-CC
TCC-TTTAACTATAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACT-
GCCCCACCC-C---ATCTCCCTTTGCTGACTCCTTTTTTGGACTCAGTCCGCCTTCACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAGAGCCTG--TTT--GGTGGTCT
CTTCGCATGGATGCACATG-----A--CA
>LTR7C_chrY_Sltr_fr_1609__chrY_42868114287250_+_
---CAGGCATCTGAGCCCAAGATAAGCCATCATATCCCCTGTGA----------------
-----------------------------C-----------------------CTGCATA
TATACATCCCGATGGC------------------------------------CTGAAGCA
ACT--GAAGAATCACAAAAGAAGTGAAAATAGTC--------------------------
------------------AGTCCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ACTCCACCATTGTGATTTGTTCCTGCCCCACCCTAACTGATCAATTA-------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGACATTCCTTCTCCTAGACAATGAGT-----
----CTCA------------GAACCTCCTC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAA----CACCTTGTA--------------
---------------------------AC-CCCTGCCTC-TGCCTGCAAGAAAATAA-CC
CCC-TTTAACTATAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACT-
GCCCCACGC-C---ATCTCCCTTTGCTGACTCCTTTTTTGGACTCAGTCCGCCTTCACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAGAGCCTG--TTT--GGTGGTCT
CTTCGCATGGATGCACATG-----A--CA
>LTR7C_chr5_Sltr_1163__chr5_60921396092575__
TGTCAGGCCTTTGAGCCCAAGCTAAGCCATCATATCCCCTGTGA----------------
-----------------------------C-----------------------C-GCACG
TATACATCCAGATGGC------------------------------------CTGAAGCA
GCT--GAAGAATCACAAAAGAAGTGAAAATAGTC--------------------------
------------------AGTTTCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATTCCACCATTGTGATTTGTTCCTGCCCCAACCTAACTGATCAATTA-------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--ATGACATTCCTT---CTAGACAATGAGT-----
----CTCA------------GAACCTCTCC-GC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------AAG----CACCTTGTG--------------
---------------------------AT-CCCTGCCCC-TGCCCACAAGAGAAAAA-CC
CCC-TTTAACTGTAATTTTTCACTACCCACCCA-AATCCTATAA-----------AACT-
GCCCCACCC-C---ATCCCCCTTTGCTGACTCCTTTTTCGGACTCAGTCTGCCTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACA-AGCCTG--TTT--GGTGGTCT
CTTCACATGGACAAGCGTG-----A--C-
>LTR7C_chrX_Sltr_1499__chrX_113122402113122837__
TGTCAGGCCTCTGAGCCCAAGCTAAGCCATCATATCCCCTGTGA----------------
-----------------------------C-----------------------CTGCACG
TGTATATCCAGATGGC------------------------------------CTGAAGCA
ACT--GAAGAATCACAAAAGAAGTGAAAATAGCC--------------------------
------------------AGTTCCTGCCTTAAGCGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------GC
ATTCCACCATTGCTGTTTGTTCCTGCTCCACCCTAACTG----ATTA-------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGACATTCCTTCTCCTAGACAATGAGT-----
----CCTA------------GAACCACAAC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------AAG----CACCTTGTG--------------
---------------------------AC-CCCTGCCCC-TGCCCGCAAGAGAATTA-CC
CCC-TTTAACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACT-
GCCCCACCG-C---ATCTCCCTTTGCTGACTCCTTTTTCAGACTCAGCCTGCCTGCACCC
GGGTG-------A-TTAAAAAGCTTTATTGCTCACCCAAAGCCTG--TTT--GGTGGTCT
CTTCACAT-GAGGCACATG-----G--C-
>LTR7C_chr5_Sltr_fr_1118__chr5_130374023130374461_+_
---CAGGCCTCTGAGCCCAAGCTAAGCCATCATATCCCCTGTGA----------------
-----------------------------C-----------------------CTGCACA
TATACATCCAGATGGC------------------------------------CTCAAGCA
ACT--GAAGAATCACAAAAGAAGTGAAAATAGCC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATTCCACCATTGCGATTTGTTCCTGCCCCACCCTAACTGATCAATTA-------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGACATTCCTTCTCCTAGACAATGAGT-----
----CTCA------------GAACCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----TACCTTGTA--------------
---------------------------AC-CCCCATCCC-CGCTCACAAGAGAATAA-CC
CCC-TTTAACTGTGATTTTCCACTACCTACCCA-AATCCTATAA-----------AACT-
GTCCCACCC-C---ATCTCCCTTTGCTGACTCCATTTTCGGACTCAGTCCGCCTGCACCC
AGGTG-------A-GTAAAAAGTTTTATTCCTCACACAAAGCCTT--TTT--GGTGGTCT
CTTCACATGGACGCACATG-----A--CA
>LTR7C_chr5_Sltr_1182__chr5_9844089598441337_+_
-GTCAGGCCTCTGAGCTGAAGCTAAGCCATCATATTCCCTGTGA----------------
-----------------------------C-----------------------CTGCACA
TATACATCCAGATGGC------------------------------------CTGAAGCA
ACC--AAAGAACCACAAAAGAAGTGAAAATAGGC--------------------------
------------------AGTTCCTGCCTTAATTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATTCCACCACTATGATTTGTTCCTACCCCACCTTAAATGATCAGTTA-------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGACATTCCTTCTCCTGGACAATGAAT-----
----CTCA------------GGAGCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------AAG----CACCTTGTG--------------
---------------------------AC-CCCCACCCC-TGCCCCCAAGATAACAA-CC
CCC-TTTAACTATAATTTTCCGCTACCTAACCA-AATCCTATAA-----------AACT-
GCCCCACCC-C--TATCTCCCTTTGCTGACTCCTTTTTCAGACTCAGTCTGCCTGCACTC
AGGTG-------A-TTAAAAAGATTTATTGTTCACACAAAGCCTG--TTT--GGTGGTCT
CTCCACATGGATGCACATG-----A--CA
>LTR7C_chrY_Sltr_fr_1588__chrY_1195212711952678__
TGTCAGGCCTCTGAGCACAAGCTAAGCCATCATATCCCCTTTGA----------------
-----------------------------C-----------------------CTGCACA
TATAAATCCAGATGGC------------------------------------CTGAAGCA
ACT--AAGAAACCACAAAAGAAGTGAAAATGGCC--------------------------
------------------AGTTCCTGCCTTAACTGAG-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATTCCACCATTGTGATTTGTTCCTGCCCCACCCTGACTGATCAGTTA-------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGGCATTCCTTTTTCTGGAAAATGAGT-----
----CTCA------------TTATCTCCCC-AT---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------GAG----TACCTTGTG--------------
---------------------------AC-CCCTGCCCC-TGCCTGCAAGAGAACAA-CC
CCC-TTTAACTGTAATTTTCCACTACTTTCCCA-AATCCTATAA-----------AACT-
GTCCCACCC-C--TATGTCCCTGTGCTGACTCCTTTTTCAGATTCAGCCCACCTGAACCC
AGGTG-------A-TTAAAGAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACTCATGTA-----A--C-
>LTR7C_chr5_Sltr_1122__chr5_136382885136383310_+_
-GTCAGGCCTCTGAGCCCAAG---------------------------------------
-----------------------------C-----------------------CTGCATG
TATTCATCCAGATGGC------------------------------------CTGAGGCA
ACC--GAAGAACCACAAAAGCAGTGAAAATGGCC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATTCCTCCATTGTGATTTGTTTCTGCCCCACCTCAACTGATCAATTA-------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGACATTCCTTCTCCTAGAAAATGAGT-----
----CTCA------------GAACTTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACATTGTG--------------
---------------------------AC-ACCCGCCCC-TGCCCGCAAGAGAAAAA-CC
CCC-TTTGACTGTAATTTTCCACTACCTACCCA-AATACTATAA-----------AACT-
GCCCCACCC-C--TATCTCCCTTCAATGACTCTTTTTTCGGACTCAGTCTGCTTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTTGTCT
CTTCACAAGGATATGCGTG-----A--CA
>LTR7C_chrX_Sltr_fr_1564__chrX_697039697420__
TGTCAGGCCTCTGAGCCCAAG---------------------------------------
-----------------------------C-----------------------CTGCACA
TATATCTCCACATGGC------------------------------------CTGAAGCA
ACT--GAAGAACCAGAAAAGAAGTGAAAATGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACG--------TT--GTGACATTCCTTCTCCTTAA-------------
-----TCT------------GGGCCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCTG-AAGAGAATAA-CC
CCC-TTTGACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACT-
GCCCCACCT-C--TATCTCCCTTTGCTGACTCCTTTTTCAGAC--------CCTGCACCC
AGGTG-------A-TTAAAAAGCCT-----------------------------------
-----------------------------
>LTR7C_chrY_Sltr_fr_1614__chrY_697039697420__
TGTCAGGCCTCTGAGCCCAAG---------------------------------------
-----------------------------C-----------------------CTGCACA
TATATCTCCACATGGC------------------------------------CTGAAGCA
ACT--GAAGAACCAGAAAAGAAGTGAAAATGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACG--------TT--GTGACATTCCTTCTCCTTAA-------------
-----TCT------------GGGCCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCTG-AAGAGAATAA-CC
CCC-TTTGACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACT-
GCCCCACCT-C--TATCTCCCTTTGCTGACTCCTTTTTCAGAC--------CCTGCACCC
AGGTG-------A-TTAAAAAGCCT-----------------------------------
-----------------------------
>LTR7Y_chr19_Sltr_fr_669__chr19_3560459635604970_+_
-GTCAGGTGTCTGAGCCCAAG---------------------------------------
-----------------------------C-----------------------CTGCATG
TATACATCCAGATGGC------------------------------------CTGAGGCA
ACT--GAAGAACCACAAAAAAAGTGAAAATGGCC--------------------------
------------------AGCTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGACATTCCTTCTCCTGGA-------------
-----TCC------------GGAGCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCTGCAAGAGAACAA-CC
CCC-TTTAACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACT-
GCCTCACTC-C--TATCTCCCTTTGCTGACTCCTTTTTCGGACTCAGTCCGCCTGCACCC
AGGTG-------A-TTAAAAAGCTTTACTGCTCACACAAAGCCTG--TTT--GATGGTCT
CTTCACACGGACGCACGTG-----A----
>LTR7o_chr10_17385379_17385754_h3k27ac_EncodeTxn_SOLO_C_7old___chr10_1738537917385754___1364
TGTCAGGCTTCTGAGCCCAAG---------------------------------------
-----------------------------C-----------------------CTGCACT
TATACATCCAGATGGC------------------------------------CTGAGGCA
ACT--GAAGAACCACAAAAGAAGTGAAAATAGCC--------------------------
------------------AGTTCCTACCTTTACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGACATTCCTTCTCCTGG--------------
-----TCC------------AGCTCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------AAG----CACCTTGTG--------------
---------------------------AC-CCCTGCCCC-CACCTGCAAGAGAATAA-CC
CCC-TTTAACTGTCATTTTCCACTACCTACCTA-AATCCTATAA-----------AACT-
GCCCCACCC-C--TATCTCCCTTTGCTGACTCCTTTTTCCGACTCACTCCGCCTGCACCC
AGGCG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACAC-CGTG-----A--C-
>LTR7o_chr8_35829022_35829396_EncodeRepressed_SOLO_C_7old___chr8_3582902235829396___1365
TGTCAGGCCTCTGAGTCCAAG---------------------------------------
-----------------------------C-----------------------CTGCACA
TATACATCCAGATGGC------------------------------------CTGAGGCA
ACT--GAAGAACCACAAAAGAAGTGAAAATGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGACATTCCTTCTCCTGGA-------------
-----TCC------------AGAGCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------GAG----CACCTTGTG--------------
---------------------------AC-CCCTGTCCC-TGCCCGCAAGAGAACAA-CT
CCC-TTTAACTGAAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACT-
GCCCCACCC-C--TAACTCCCTTTGCTGACTCCTTTTTCTGACTCAGCCCGCCTGCACCT
AGGTG-------A-TTAAAAAGCTTTATTACTCACACAAAGCCTG--TTT--GGTGGGGT
CTTCACACAGATGTGTGTG-----A--C-
>LTR7o_chr11_75331868_75332247_h3k27ac_enh_SOLO_NANOG_7old____chr11_7533186875332247____1365
-GTAAGGCTTCTGAGCTCAAG---------------------------------------
-----------------------------C-----------------------CCGCAGG
TATACATCCGGATGGC------------------------------------CTGAGGCA
ACT--GAAGAACCACAAAAGAAGTGAAAATGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGACATTCCTTCTCCTGGC-------------
-----TCC------------GGAGCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTTTG--------------
---------------------------AC-CCCCGCCCC-TACCCGCAAGAGAACAA-CC
CCC-TTTAACTGTAATTTTCCACTACCTACCCA-AATCCTGTAA-----------AACT-
GCCCCACCC-C--TATCTCTCTTTGCTGATTCCTTTTTCAGACTCAGTCTACCTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGTTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACAGGGATGTGTGTG-----A--CA
>LTR7C_chr12_Sltr_254__chr12_124107089124107505__
TGTCAGGCCTCTGAGCCCAGG---------------------------------------
-----------------------------C-----------------------CTGCACG
AATACATCCAGATGGC------------------------------------CTGAGGCA
ACT--GAAGAACCACAAAAGAAGTGAAAATGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGACATTCCTTCTCCTGG--------------
----TATC------------AGAGCCTTCT-CA---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------CAG----CACCTTGTG--------------
---------------------------AC-CCCCACTCC-TGCAC-CTTGTGAACAA-CC
CCC-TTTAACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACT-
GCCTCACCC-C--TATCTCCCTTTGCTGACTCCCTTTTCGGACTCAGTCCGCCTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTA--TTT--GGTGTTCT
CTTCACACAGACGGGCATA-----A--C-
>LTR7o_chr14_25425572_25430929_2340_1_EncodeRepressed_GRO5of7_GRO6of7_GRO7of7_C_7old___chr14_2543054025430929___1362
TGTCAGGCCTCTGAGTCCAAG---------------------------------------
-----------------------------C-----------------------CTGCACG
TGTACATCCAGATGGC------------------------------------CTGAGGCA
ACT--GAAGAACCACAAAAGT--TGAAAATGGCC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGACATTCCTTCTCCTGG--------------
----CTCC------------GGAGCTCCCC-GC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------GAG----CACCGTGTG--------------
---------------------------AC-CCCCACCCC-TGCCCGAAAGAGAACAA-CC
GTC-TTTAACTGTAATTTTCAACTACCTACCTG-AACCTTATAA-----------GACT-
GCCCCACCC-C--TATCTCCCTTTGCTGATTCTCTTTTTGGACTCAGTCCACCTGCA-CC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCATACAGACGCGCGTG-----A--C-
>LTR7o_chr19_44591494_44591866_h3k27ac_EncodeRepressed_SOLO_C_7old___chr19_4459149444591866___1363
--TCAGGCCTCTGAGCCCAAG---------------------------------------
-----------------------------C-----------------------CTGCATG
TATACATCCAGATGGC------------------------------------CTAAGGCA
ACT--GAAGAACCACAAAATAAGTGAAAATGGCC--------------------------
------------------GGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACC--------TT--GTGATATTCCTTCTCCTGG--------------
----CTCT------------GGAGCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACCCC-TGCCCGCAAGAGAACAA-TC
CCC-TTTAACTATAATTTTCCACTATGTACCCA-AATCCTATAA-----------ACAT-
GCCCCACCC-C--TATCTCCCTTTACTGACTCCTTTTTTGGATTCAGTCTGCCTGCACCC
AGCTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCA
CTTCACATGGACGTGCATG-----A--C-
>LTR7C_chr1_2ltr_int_fr_54__chr1_226833503226833944_+_
-GTCAGGTCTCTGAGCCCAAG---------------------------------------
-----------------------------CTAAGCCATCATAACCCCTGTGACCTGCACG
TATACATCCAGATGGC------------------------------------CTGAAACA
ACT--AAAGAACCACAAAAGAAGTG-AAATAGCC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CCACCATTATGATTTGTTCCTGTCCCACTCTA
ACTGATCAATTGACC--------TT--GTGACATTCCTTCTCCTGG---------ACAGT
GAGTCTCA------------GGGGCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------AAG----CACCTTGTG--------------
---------------------------AC-CCCTGCCCC-TGCCTGCAAGAGAAAA--TC
CCC-TTTAACTGCAATTTTCCACTACCTACCCA-AATCCTATAA-----------ACCT-
GCCCCACCC-C--TATCTCCCTTTGCTGACTCTCTTTTTGGACTCAGCCCACTTGCACCC
AAGTG-------A--TAAACAGCCTTGTTGCTCACACAAAGCCTG---TT--GGTGGTCT
CTTCACACAGACAAGTGTA-----A--CA
>LTR7C_chr19_2ltr_int_fr_572__chr19_2185808421858510_+_
-GTCAGGCCTCTGAGCCCAAG---------------------------------------
----------------------------------------------------CCTGCACA
TATACATCCAGATGGC------------------------------------CTGAGGCA
ACT--GAAGAACAATGAAAGAAGTGAAAATGGCC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
AAT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CCACCATTGTGATTTGTTCCTACCCCACCCTG
ACTGATCAATTAACC--------TT--GTGACATTCCTTCTCCTGG---------ACAAT
GAGTCTCA------------GAAGCTCCCT-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------GAG----CACCTTGTA--------------
---------------------------AT-CCCCCCCAC-TGCCTGCAAGAGAAAAA-TT
CCC-TTTGACTGTAATTTTCCACTACCTACCCC-AATCCTATAA-----------AACT-
GCCCCACCC-C--TATCTCCCTTTGCTGGCTCTGTTTTCAGACTCAGCCCACTTGCACCC
AAGTG-------A--TAAACAACCTTGTTCCTCACACAAAGCCTG---TT--GGTGGTCT
CTTCACACAGATGTGTGTG-----T--CA
>LTR7C_chr1_Sltr_21__chr1_171371956171372388_+_
-GTCAGGCCTCTGAGCCCAAG---------------------------------------
-----------------------------CTAAGCCATCATATCCCCTGTGACCTGCACA
TATACATCCAGATGGC------------------------------------CTGAAGCA
ACT--GAAGAACCACAAAAGAAGTGAAAATAGTC--------------------------
------------------ACTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CCACCATTGTGATTTGCTCCTGCCCCATCCTA
ACTGATCAATTGAAC--------TT--GTGACATTCCTTCTCCTGT---------ACAAT
GAGTCTCA------------TAATCT----------------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------------------G----CACCTCGTG--------------
---------------------------AC-CCCCGCCCC-TGCCCACAAGAGA-TAA-TC
ACC-TTTAACTGTAATTTTCCACTACCTACCCA-AATCCTGTAA-----------AACC-
GCCCCACCC-C---ATCTCCCTTTGCTGACTCTCTTTTCAGACTCAGCTCACTTGCACCC
AAGTG-------A--TAAACAGCCTTGTTGCTCACACAAAGCCTG---TT--GGTGGTCT
CTTCACATGGAGTCGTGTG-----A--CA
>LTR7C_chr1_Sltr_fr_101__chr1_7314293773143372__
TGTCAGGCCTCTGAGCCAAAG---------------------------------------
-----------------------------CTAAGCCATCATAACCCTTGTGACCTGCACG
TATATATCCAGATGGC------------------------------------CTGGAGCA
ACT--GAAGAACCACAAAAGAAATGAAAC-AGCC--------------------------
------------------AATTTCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
A-T---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CCACCATCGTGATTTGTTTCTGCCCCACCGTA
ACTAATCAATTGACC--------TT--GGGACATT-GCTCCCCTGG---------ACAAT
GAGTCTCA------------TGATCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------CTG----CACCTTGTG--------------
---------------------------AC-CCCCAACCC-CACCTGTAAGAGA-TAA-CC
ACC-TTTAACTGTAACTTTCCACTACCTAACCA-AATCCTGTAA-----------AACT-
GCCCCATCC-C---ATCACCCTTTGCTGACTCTCTTTTTGGACTCAGCCCACTTGCACCC
AAGTG-------A--CAAAGAGCCTTGTTACTCACTGAAAGCCTG---CT--GGTGGTCT
CTTCACACAGATGCAT-------------
>LTR7C_chr19_Sltr_fr_587__chr19_4245993942460310_+_
-GTCAGGCCTCTGAGCCCAAG---------------------------------------
-----------------------------CTAAGTCATCATATCTCCAGTGATCTGCATG
TATACATCCAGCTGGC------------------------------------CCGAAGCA
ACT--GAAGAACCACAAAAGTAA--AAAG-AGCC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------GC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CTACCATTGTGATTTGTTTCTGCCCCACTCTA
ACTGATCAATTGACC--------TT--GTGACATTCTTTTTCTTGG---------ACAGT
GAGTCTCA------------TGATCTCTCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------GTG----CACTTTGTG--------------
---------------------------AC-CTCCACCAC-TGCCCACAAGAGA-AAA-CC
ACC-TTTAACTGTAATTTTCCACTACCTACCCA-AATCCTGTAA-----------AACT-
GTCCC--CC-C---ATCTCCCTTTGCTGACTCTCTTTTCAGACTCAGCCCACTTGCACCC
AAGTG-------------------------------------------------------
-----------------------------
>LTR7C_chr3_Sltr_930__chr3_55087185509159__
TATCAGACCTCTGAGCCCAAG---------------------------------------
-----------------------------CTAAGCCATCATATCCCCTGTGACCTGCACA
TATACATCCAGATGGC------------------------------------CTGAAGCA
ACT--GGAGAACCACAAAAGAAGTGAAAATAGCC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CCACCATTGTGATTTGTTCCTGCCCCACCCTA
ACTGATCAATTGACC--------CT--GTGACATTCTTTCTCCTGG---------ACAAT
GAGCCTTA------------GAAGCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------GAG----CACCTTGTA--------------
---------------------------AC-CCCCACCCC-TGCCCACAAGAGAAAAA-CC
CCC-TTTGACTGTAATTTTCCACTATCTACCCA-AATCCTATAA-----------AACT-
GCCCCACCC-C---ATCTCCCTTTGCTGACTCCTTTCTCGGACTCAGCCCACTTGTACCC
AAGTG-------A--TAAACAGCCTTGTTGCTTACACAAAGCCTG---TT--GGTAGTCT
TTTCACACAAATGCGTGTG-----A--C-
>LTR7C_chr5_Sltr_1100__chr5_111889687111890106__
TGTCGGGTCTCTGAGCCCAAG---------------------------------------
-----------------------------C-----------------------CTGCACA
TATACATCCAGATGGC------------------------------------CTGAGGCA
ACT--GAAGAACCACAAAAGAAGTGAAAATGGGC--------------------------
------------------AGTTCCTTCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
CTT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CCACCATTGTGATTTGTTCCTGTCCCACCCTA
ACTGATCAATTGACC--------TT--GTGAAATTCCTTCTCCTGG---------ACAAT
GAATATCA------------GAACCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTA--------------
---------------------------AC-CCCCACCCC-TGCCCGCAAGAGAATAA-CC
CCC-TTTAACTGTAATTTTCCACTACCTACCCA-AATCCTATGA-----------AACT-
GCCCCACCC-C---ATCTCCCTTTGCTGACTCTCTTTTTGGACTCAGCCCACTTGCACCC
AAGTG-------A--TAAACAGCTGTGTTGCTCACACAAAGCCTG---CT--GGTGGTCT
CTTCACACGGACGCATGTG-----A--C-
>LTR7C_chr12_Sltr_334__chr12_9295704992957473__
TGTCAGGCCTCTGAGCCC------------------------------------------
----------------------------------CCATCATATCCCCTGTGACCTGCACT
TATAAATCCAGATGGC------------------------------------CTGAAGCA
ACT--GAAAAACCACAAAATAA-TGAAAATAGCC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------A-
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------------------CATTGTGATTTGTTCCTGCCCCACCCTG
ACTGATCAGTTAGCC--------TT--GTGACATTCCTTCTCCTGG---------ACATT
AAGTCTCC------------GGAGCTCTCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACCCC-TGCCTGCAAGAGAACAA-CC
CCC-TTTAACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACT-
GCCCCACCC-C--TATCTCCCTTTGCTGACTC--TTTTTGGACTCAGCCCACTTGCATCC
AAGTG-------A--TAAACAGCCTTGTTGCTCACACAAAGCCTG---TT--AGTGGTCT
CTTCACACAGAGGGGCATG-----A--C-
>LTR7C_chr5_Sltr_1092__chr5_101156037101156467__
TGTCAGGCCTCTGAGACCAAG---------------------------------------
-----------------------------CTAAGCCATCATATCCCCTGTGACCTGCATG
TATAAATCCAGATGGC------------------------------------CTGAAGCA
ACT--GAAAAACCACAAAAGAAGTGAAAATAGGC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CCACCATTGTAGTTTGTTCCTGCTCCACCCTG
ACTGATCAATTAACC--------TT--GTGACATTCCTTCTCCTGG---------ACAAT
AAGTCTCC------------CGAGCT----------------------------------
------------------------------------------------------------
------------------------------------------------------------
---------------------------------------CCCTGTG--------------
---------------------------AC-CCCCGCCGC-TGCCGGCAAGAGAACCA-CC
CCC-TTTAACTGTAATTTTCTACTATCTACCCA-AATCCTATAA-----------AATT-
GCCCCACCC-C--TATCTCCCTTTGCTGACTCCTTTCTTGGACTCAGCCCACTTGCACCC
AAGTG-------A--TAAACAGCCTTGTTGCTCACGCAAAGCCTG---TT--GGCGGTTT
CATCTCACAGACACGCGTG-----A--C-
>LTR7C_chr19_Sltr_fr_573__chr19_2186702621867391_+_
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------AAGAACCACAAAAGAAGTGAAAATGTCC--------------------------
------------------AGTTCCTGCCTTAATTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CCACCACTGTGATTTGTTCCTGCCCCACTCTG
ACTGATCAATTAACC--------TT--GTGACCTTCCTTCTCCTGG---------ACAAT
GAGTCTCA------------GAAGCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------AAG----CACCTTGTA--------------
---------------------------AC-CCCCGCCCC-TGCCCACAAGAGAAAAA-CC
CCC-TTTGACTGTAGTTTTCCACTACCTACCCA-AATTCTATAA-----------AACT-
GCCCCACCC-C--TATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACTTGCACCC
AAGTG-------A--TAAAAAGCCTTGTTGCTCACACAAAGTCTG---TT--GGTGGTGT
CTTGACATGGACGCACATG-----A--CA
>LTR7C_chr5_Sltr_1157__chr5_4360716443607606_+_
-GTCAGGACTCTGAGCCCAAG---------------------------------------
-----------------------------CTAAGCCATCATAACCCCTGTGATCTGCACG
TATACATCCAGATGGC------------------------------------CTGAAGCA
ACT--GAAGAACCACAAAAGAAGTGAAAATGGCC--------------------------
------------------AGTTCCTGCCTTAACTGAT-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CCACCATTGTGATTTGTTTGTGCCCAACCCTA
ACTGATCAATTGACC--------TT--GTGACATTCCTTCTCCTGG---------ACAAT
GAGTCTCA------------GGAGCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------AC-CCCCACCAC-TGTCTGCAAGAGAA-AA-CC
TCC-CTTAACTGTAATTTTCCACCACCTACCCA-AATCCTATAA-----------AACT-
GCCCCACCC-C--TATCTGTCTTTGCTGACTCTCTTTTCGGACTCAGCCCACTTGCACCC
AAGTG-------A-ATAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGTGCATA-----A--CA
>LTR7C_chr1_2ltr_int_fr_2__chr1_104380123104380544_+_
-GTCAGGCCTCTGAGCCCAAG---------------------------------------
----------------------------------------------------CCTGCAAG
TATACTTCCAGATGGC------------------------------------CTGAGGCA
ACC--AAA-AACTACAAAGGAAGTG-AAACAGTC--------------------------
------------------AGCTCCTGTCTTAACTGATTGACCACCCTTAG----------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------CCATTATGATTTGTTCCTGCCCTGCCCCA
ACTGAT----CCACC--------TC--GTGACATTC-TTCTTCTGA---------ACAAT
GAGACTTA------------TGATCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------ATG----CACCTTGTG--------------
---------------------------AC-CCCCTCCTC-TGCTGACAATAG-ATAA-CC
ACC-TTTAACTGTAACTTTCTACTGT----CCC-AGTCTTATAA-----------AGCT-
ACCCCACCC-C--TACCTCCCTTGGCTGACTCTCTTTTCGGACTCAGCCCACTTGCCCCC
AAGTG-------A-ATAAACAGCCTTGTTGCTCACACAAAGCCTG--T-T--GGTGGTCT
CTTTACACGGATGTGCTTG-----A--CA
>LTR7C_chr4_Sltr_1012__chr4_156021421156021848_+_
-GTCAGGCCTCTGAGCTTAAG---------------------------------------
----------------------------------------------------CCTGCACA
TATACATCCAGATGGC------------------------------------CTGAGGCA
ACC--GAA-AACTACAAAGGAAGTG-AAACAGCC--------------------------
------------------AGCTCCTGTCCTAACTGATTGACCAACCTTAC----------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------CCACTGTGATGTGTTCCCGCCCTGCCCCA
ACTGATAGATCAACC--------TC--GTGACATTC-TTCTTCTGG---------ACAAT
GAGTCTTA------------GGATCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------ATG----CACCTTGTG--------------
---------------------------AC-CCCCTCCTC-TGCTGACAATAG-ATAA-CC
ACC-TTTAACTGTAACTTTCCACTGCTTACTCC-AGTCCTATAG-----------AACT-
GCCTCACCC-C---ATCTCCTTTGGCTGACTCTCTTTTCGGACTCAGCCCATTTGCACTC
AAGTG-------A-ATAATCAGTCTTGTTGTTCACACAAAGCCTG--T-C--GGTGGTCT
CTTCACACAGATGCACTTG-----A--CA
>LTR7C_chr2_2ltr_int_fr_740__chr2_4137783341378263_+_
-GTCAGGCCTCTGAGCCCAAG---------------------------------------
----------------------------------------------------CCTGCACA
TATACATCCAGATGGC------------------------------------CAGAGGCA
ACC--GAA-AACTACAAAAGAAGTA-AAACAGCC--------------------------
------------------AGCTCCTGTCTTAAATGATTGACCAACCTTAC----------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------CCATTATGACTTGTTCCTGCCCTGCCCCA
ACTGATTGATCGACC--------TC--GTGACATTC-TTCTTCTGG---------ACAAT
GAGTCTTA------------TGATCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------ATG----CACCTTGTG--------------
---------------------------AC-CTCCTCTTC-TGCTGACAATAG-ATAA-CC
ACC-TTTCACTGTAACTTTCCACTGCTTACCCC-AGTCCTGTAA-----------AACT-
GCCCCACCC-C--TATCTCCCTTTGCTGACTCTCTTTTCAGACTAAGCCCACTTTTACCC
AAGTG-------A-ATAAACAGCCTTGCTGCTCACACAAAGTCTA--T-T--GGTGGTCT
CTTCACATGGACACGCTTG-----A--CA
>LTR7C_chrX_2ltr_int_fr_1569__chrX_7563728275637730__
TGTCAGGCTTCTGAGCCGAAG---------------------------------------
----------------------------------------------------CCTGCACA
TATATGTCCAGATGGC------------------------------------CAGAGGCA
ACC--CAA-AACTACAGAAGAAGTA-AAACAGCC--------------------------
------------------AGCTCTTGTCTTAACTGATTGACCAACCTTAC----------
---A--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------CCATTATGACTTGTTCCTGCCCTGCCCCA
ACTGATTGATCAACC--------TC--GTGACATTC-TTCTTCTGG---------GCAAT
GAGTCTTA------------TGATCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------ATG----CACCTTGTG--------------
---------------------------AC-TCCCTCCTC-TGCTGAC-------------
----------TGTAACTTTCCACTGCTTACCCC-AGTCCTATAA-----------AACT-
GCCCCACCC-C--TATCTCCCTTTGCTGACTCCTTTTTCGGACTCAGCCCACCTGCATCC
AGGTG-------A-ATAAACAGCTTTATTGCTCACAGAAAGCCTG--T-T--GGTGGTCT
CTTCACACGGACGCATATG-----A--C-
>LTR7C_chr17_Sltr_528__chr17_8234637382346833__
TGTCAGGCCTCTGAGCCGAAG---------------------------------------
----------------------------------------------------CCTGCACA
TGTATGTCCAGATGGC------------------------------------CAGAGGCA
ACC--CAA-ATCTACAAAAGAA-TG-AAACAGCC--------------------------
------------------AGCTCCTGTCTTAACTGATTGACCAACCTTAC----------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------CCATGATGACCTGTTCCTGCCCTGTCCCA
CCTGATCGATCGACC--------TC--GTGACATTC-TTCTTCCGG---------ACAAT
GAGTCTTA------------TGATCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------ATG----TACCTTGTG--------------
---------------------------AC-CCCCTCCTC-TGCTGACAATAG-GTAA-CC
ACC-TTTCACTGTAACTTTCCACTGTTTACCCC-AGTCCTATAA-----------AACG-
GCCCCACCC-C--TACCTCTCTTTGCTGACTC--TTTTCGGACTCAGCCCACTTGCACCC
AAGTG-------A--TAAACAGCCTTGTTGCTCACACAAAGCCTG--T-T--GGTG-TCT
CTTCACATGGACGCACGTG-----A--C-
>LTR7C_chr5_Sltr_1155__chr5_4332082343321290__
TGTCAGGTCTCTGAGCCGAAG---------------------------------------
----------------------------------------------------CCTGCACA
TATACGTCCAGGTGGC------------------------------------CAGAGGCA
ACC--CAA-AACTACAGAAGAAGTG-AAACAGCC--------------------------
------------------AGCTCCTGTCTTAACTGATTGACCAACCTTAC----------
---A--------------------------------------------------------
----------------------------------------------------------AT
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------CCATTATGACTTGTTCCTGCCCTGCCCCA
ACAGATCAATCAATC--------TC--GTGACATTC-TTCTTCGGG---------ACAAT
GAGTCTTA------------TGATCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------ATG----CACCTTGTG--------------
---------------------------AC-CCCCTCTTC-TGCTGACAATAG-ATAA-CC
ACC-TTTAACTGTAACTTTCCACTGTTTAACCC-AGTCCTATAA-----------AACT-
GCCCCATGC-C--TATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACTTGCCCCC
AAGTG-------A-CAAGACAGCCTTGTTGCTCACACAAAGCCTG--T-T--GGTGGTCT
CTTCACACGGACGCACTTG-----A--C-
>LTR7C_chr7_Sltr_1299__chr7_118580727118581193__
TGTCAGGCCTCTTAGCTGAAG---------------------------------------
----------------------------------------------------CCTGAACA
TATACGACCAGATGGC------------------------------------CAGAGGCA
ACC--TAA-AACTACAAAAGAAGTG-AAGCAGCC--------------------------
------------------AGCTCCTGTCTTAACTGATTGACCAACCTTAC----------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------CCATTATGACTGGTTCCTGTCCTGCCCCA
ACTGATAGATCGACC--------TT--CTGACATTC-TTCTTCTGA---------ACAAT
GAGTCTTA------------TGATCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------ATG----CACCTTGTG--------------
---------------------------AC-CCCCTCCTC-TGCTAACCACAG-ATAA-CC
ACC-TTTAACTGTAACTTTCCACTGCTTCCCCC-AGTCCTATAA-----------AACT-
CCCCCACCC-C--TATCTCCCTTTGCTGACTCTCTTTTCAGACTCAGCCCACTTGCACCC
AAGTG-------A-ATTAACAGCCTTGTTGCTCACACAAAGCCTG--T-T--GGTGGTCT
CTTCA-ACGGATGCGCTTG-----A--C-
>LTR7C_chr22_Sltr_818__chr22_3913037839130739_+_
-GTCTGGCCTCTGAGCTGCAG---------------------------------------
----------------------------------------------------CCTGCACA
TATACATCCAGATGGC------------------------------------C-------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
--T---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------CCATTATGGCTTGTTCCTGCCCTGCCCCA
ACTGATCGA----CC--------TG--GTGAC---C-TTCTTCCGG---------ACAAT
GAGTATTA------------TGATCTCCCC-AA---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------AGG----CACCTTGTG--------------
---------------------------AC-CCCCTCCCC-TGCTGACAATAG-CTAA-CC
ACC-TTTCACTGTAACTTTCCACTGCTTACCCC-AGTCCTATAA-----------AACT-
GCCCCACCC-C--TATCTCCCTTGGCTGACTCTTTTT--GGACTCAGCCCACTTGCACCC
AAGTG-------A-ATAAACAGCCTTGTTGCTCGCACAAAGTCTG--T-T--GGTGG---
--------GGATGCACTTG-----A--CA
>LTR7C_chr5_Sltr_1150__chr5_2111793421118360__
TATCAGGCCTCTTAGCCCAAG---------------------------------------
----------------------------------------------------CCTGCACA
TATACATCCTGATGGC------------------------------------CTGAGGCA
ACC--GAA-AAGTATAAAAGAAGTG-GAAGTGCC--------------------------
------------------AGCTCCTGTCTCAACTGATTGACCAACCTTAA----------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------CCATTATGACTTGTTCCTGCCCTGCCCCA
ACTGATCGATTGACC--------TC--GTGACATTC-CTCTTTTGG---------ACAAT
GAGTCTTA------------TGATCTCCTC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------ATT----CACCTTGTG--------------
---------------------------AT-C-CCTCCTC-AGCTGACAATAG-ATAA-CC
ACC-TTTAACTGTAACTTTCCACTGCCTGCCCC-AGTCCTATAA-----------AACT-
GCCCCATCC-C--TATCTCCCTTTGCTGACTCCTGTCTCAGACTCAGCCCATTTGCACCC
AAGTG-------A--TAAACAGTCTTGTTGTTCACACAAAGCCTG--T-T--GGTGGTCT
CTTCACACGGACGCGCATG-----A--C-
>LTR7C_chr4_Sltr_969__chr4_109810942109811372__
TGTCAGGCCTCTGAGCCCAAG---------------------------------------
----------------------------------------------------CCTGCGTG
TATACATCCAGATGGC------------------------------------CTGAGTCA
ACT--GAA-AACTACAAAGGAAGAG-AAACAGCC--------------------------
------------------TGCTCCTGTCTTAACTGATTGACCAACCTTAA----------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------CCATTATGACCTGTTCCTTCCCTG-CCCA
ACTGATTGATCGACC--------TC--GTGACATTC-TTCTTCTGG---------ACCAT
GGGTCTTA------------TGATCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------ATG----CACCTTGTG--------------
---------------------------AC-CCCCTCCTC-TGCTGACAATAG-ATAG-CC
ACC-TTTAACTGTAACTTTCCACTGCTTATCCC-AGTCCTATAA-----------AACT-
GCCCCACCC-C---ACCTCCCTTTGCCGACTC--TTTTCAGACTCAGCCCACTTGCTCCC
ACATG-------A-ATAAACAGCCTTGTTGCTCACACAAAGCCTG--T-T--GGTGGACT
CTTCACACGGACGAGCGTG-----A--C-
>LTR7C_chr19_2ltr_int_fr_596__chr19_5262068452621112_+_
--TCAGGCCTCTGAGCCCAAG---------------------------------------
----------------------------------------------------TCTGCACG
TATACATCCAGATGGT------------------------------------CTGAGGCA
AGC--GAA-AAGCACAAAAGAAGTG-AAACAGCC--------------------------
------------------AGCTTCTGTCTTAACTGATTGACCAACCTTAT----------
---G--------------------------------------------------------
----------------------------------------------------------AC
TTT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------CCATTATGACTTGTTTCTGCCCTGCCCCA
ACTGATGGATCAACC--------TC--ATGACATTC-TTCTTCTGG---------ACAAT
GAGTCCTA------------TGACCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------ATG----CACTTTGTG--------------
---------------------------AC-CCCCTCCTC-TGCTGACAATAG-ATAA-CC
ACC-TTTAATTGTAACTTTCCACTGCTTATCCC-AGTCCTATAA-----------AACT-
GCCACTCCC-C--TATCTCCCTTTGCTGACTC-CTTTTTGGACTCAGCCTGCCTGCACCC
AGGTA-------A-ATAAACAGCCTTGTTGCTCACACAAAACCTG--TTT--GGTGGTCT
CTTCACAGGGACATACGTG-----A--CA
>LTR7C_chr7_2ltr_int_fr_1361__chr7_9972315199723575_+_
---CAGGCCTCTTAGCCCAAG---------------------------------------
----------------------------------------------------CCTGCATG
GGTACATCCAGATGGC------------------------------------CTGAGGCA
ACC--AAA-AACTACAAAT-AGGTG-AAACAGCC--------------------------
------------------AGCTCCTGTCTTAACTGATTGACCAACCTTAC----------
---A--------------------------------------------------------
----------------------------------------------------------AC
GTT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------CCATTATGACTTGTTACTGCCCTGCCCCA
ACTGATTGATCGACC--------TC--GTGACATTC-TTCTTCTGG---------ACAAT
GAGTCTTA------------TGATCTCCCT-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------ATG----CACCTTGTG--------------
---------------------------AC-CCCCTCCTC-TGCTGACAATAG-ATAA-CT
TCC-TTTAACTGCAACTTTCCACTGCTTACCCC-AGTCCTATAA-----------AACT-
GACCCACCC-C--TATCTCCCTTTGCAGACTC-CTTTTCGGACTCAGTCAGCCTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGACTG--TTT--GGTGGTCT
CTTCACATGGACGCAAATG-----A--CA
>LTR7C_chr15_Sltr_fr_435__chr15_2793346427933851__
------------------------------------------------------------
------------------------------------------------------------
-------------AGC------------------------------------CTGAGGCA
ACT--GAA-AAGTACAAAAGAAGTG-AAACAGCC--------------------------
------------------AGCTCTTGTCTTAATTGATTGACCAACCTTAC----------
---A--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------CCGCTATGACTTGTTCCTGCGCTGTCCCA
ACTGATCCATCGACC--------TC--ATGACATTC-TTCTTCTGG---------ACAAT
GAGTCTTA------------TGTTCTCTCC-AG---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------ATG----CACGTTGTG--------------
---------------------------AC-TCCCGCCCT-GGCCTGCAAGAG-AAAA-CC
CCC-TTTAACTGTAACTTTCCACTGCTTACCCC-AGTCCTATAA-----------AACT-
GCCCCATCC-C--TAACTCCCTTCGCTGACTCTCTTTTCGAACTCAGCTCGCCTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCATACGGACACGCGTG-----A--C-
>LTR7C_chr8_Sltr_1377__chr8_124897369124897795__
TGTCAGGCCTCTGAGCCCAAG---------------------------------------
----------------------------------------------------CCTGCACA
TATACATCCAGATGGC------------------------------------CTGAGGCA
A-T--CAG-AAGTGCAAAAGAAGTG-AAACAGCC--------------------------
------------------AGCTCTTGTCTTAACAGATTGAACAACCTTAT----------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------CCATTATGACTTGTTCCTTCCCTGCCCCA
ACTGATCGATCGACC--------TT--GTGACATTC-TTCTTCTGG---------ACAAT
GAGTCTTA------------TGATCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------ATG----CACCTTGTG--------------
---------------------------AC-CCCCTCATA-GGCTGACAATAG-ATAA-CC
ACC-TTTAACTGTAACTTTCCACTGCTTACCCC-AGTCCTATAA-----------AACT-
GCCCCATCC-C--TATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC
AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG---TT--GGTGGTCT
CTTCACACGGATGTGCATG-----A--C-
>LTR7C_chrX_2ltr_int_1540__chrX_2729455027294978__
TGTCAGGCCTCTGAGCCCAAG---------------------------------------
----------------------------------------------------CCTGCATG
TATACATCCAGATGGC------------------------------------CTGAGGCA
ACC--GAA-AAGTACAAAAGAAGGG-AAACAGCT--------------------------
------------------AGCTCCTGTCTTAACTGATTGACCAACCTTAC----------
---A--------------------------------------------------------
----------------------------------------------------------AC
TTT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------CCATTATGATTTGTTCCTGCTGTGTCCCA
GCTGATCGATCGAGC--------TT--GTGACATTC-TTCTTCTGG---------ACAAT
GAGACTTA------------TGATCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------ATG----TACCTTGTG--------------
---------------------------AC-CCCCGCCCC-TGCCCACAAGAG-AAAA-CC
TAC-TTTAACTATAACTTTCCACTGCTTATCCC-AGTCCTATAA-----------AACT-
GCCCCATCC-C--TAACTCCCTTCGCTGACTGCTTTCTTGGACTCAGCCCACTTGCACCC
AGGTG-------A-ATAAACAGCCTTGTTGCTCACCCAAAGTCTG---TT--GGTGGTCT
CTTCACACAGACGCTCATG-----A--C-
>LTR7C_chr4_Sltr_fr_975__chr4_117914207117914631_+_
--TCAGGCTTCTGAGCCCAAG---------------------------------------
----------------------------------------------------CCTGCATG
TATACATCCAGATGGC------------------------------------CTGAGACA
ACT--GAA-AAGTACAAAAGAAGTG-AAAGAGCC--------------------------
------------------AGCTCCTTTCTTAACTGATGGACAAACCTTAC----------
---A--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------CCATTATGATTTGCTCCTGCCCTGTCCCA
AATGATCGATGGACC--------TC--GTGACATTC-TTCTTCTGG---------AAAAT
GAGTCTTA------------TGATCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------AAG----AACCTTGCG--------------
---------------------------AC-GCCAACCCC-TGCCCGCAAGAG-AAAA-CC
CCC-TTTAACTGTAACTTTCCACTGCTTATCCC-AGTCCCATAA-----------AAGT-
GCCGCATCT-C--TAACTCCCTTCACTGACTCCTTTCTCAGACTCAGCCCACTTGCACCC
AAATG-------A-ATAAACAGCTTTGTTGCTCACACAAAGCCTG---TT--GGTAGTCT
CTTCACACGGACGC--ATG-----T--G-
>LTR7C_chr16_2ltr_int_fr_474__chr16_3574530135745766__
TGTCAGGTCTCTGAGCCAAAG---------------------------------------
-----------------------------CTCAGCCATTGTAACCCCTGTGACCTACACA
TAAATGTCCAGATGGCCTGCAAGAGCCAAGAAGT------------------CTGGGTCA
ACCA-AAA-AAACACAAAAGAAGTA-AAATAACC--------------------------
------------------AGTTCCTGCCTTAACTGATTAACCAACATTAC----------
---A--------------------------------------------------------
----------------------------------------------------------CC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------ACACCATTGTGACTTGTCCCTGCCCTACCTTA
ACTGATCAATCAACC--------TT--GTAACATTC-TTATTCTGG---------ACAAT
AAGTCTTA------------TGATCTCCCC-AT---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------ATG----TACCTTGTG--------------
---------------------------AC-CCTGTCCTC-TGCTAACAATAG-ATGA-CC
ACC-TTTTACTGTAAATTTCCATTACTTACCCA-ACTCCTGTAA-----------AGCA-
-CCCCTTCC-T--TATCTCCCTTTGCTGACTCTCTTTTTGGACTCAGTCCACTTGCCCCC
AAGTG-------A-ATAAACAGCCTTGTTGCTCA-ACAAAGCCTG--TT---GGTGGTCT
CTTCACATGGATGGGCTTG-----A----
>LTR7C_chr11_Sltr_fr_192__chr11_2603013026030550_+_
-GTCAGGCCTCTGAGCCGAAG---------------------------------------
-----------------------------CTCAGCCATTGTAACCCCTGTGACCTGCACA
TATATGTCCAGATGGCCTGCAGGAGCCAAGAAGT------------------CTGGGGCA
GCCG-AAA-AACCACAAAGGAAATA-AAACAGCC--------------------------
------------------ACTTCCTGCCTTAATTGATTAACCAACATTAC----------
---A--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CCTCCATTGTGACTTGTCCCTGCCCTACCTTA
ACTGATCAATCGACC--------TT--GTGACATTC-TTCTTCTGG---------ACAAT
AAGTCTTA------------TGGTCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------ATG----TACCTTGTG--------------
---------------------------AC-CCCCTCCTC-TGCT---AATAG-ATAA-CC
ACC-TTTTACTGTAATTTTCCATTACCTACCCA-ACTCCTATAA-----------AGCA-
ACCCCTTCC-C--CATCACCATTCGCTGACTCTCTTTTCGGACTCAGCCCACTTGCACC-
AAGTT-------A-ATAAACAGCCTTGTTGCTC---------------------------
-----------------------------
>LTR7C_chr2_Sltr_760__chr2_7113150271131972__
TGTCAGGCCTCTGAGCTGAAG---------------------------------------
-----------------------------CTCAGCCATTGTAACCCCTGTGACCTGCACA
TATATGTCCAGATGGCCTGCAGGAGCCAAGAAGT------------------CTGGGGCA
GCCG-AAA-AACCACAAAAGAAATA-AAACAGCC--------------------------
------------------AGTTCCTGCCTTAATTGATTAATCAACATTAC----------
---A--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CCTCCATTGTGACTTGTCCCTGCCCTACCTTA
ACTGATCAATCGACC--------TT--GTGACATTC-TTCTTCTGG---------ACAAT
AAGTCTTA------------TGATCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------ATG----TACCTTGTG--------------
---------------------------AC-CCCCTCCTC-TGCT---AATAG-ATAA-CC
ACC-TTTTACTGTAATTTTCCATTACCTACCCA-ACTCCTATAA-----------AGCA-
ACCCCTTCC-C--CATCACCATTAGTTGACTCTCTTTTCGGACTCAGCCCACTTGCACCC
AAGTG-------A-ATAAACAGCCTTGTGGCTCACACAAAGCCTG--TT---AGTGGTCT
CTTCACACAGACGCGCTTG-----A--C-
>LTR7C_chr14_Sltr_388__chr14_2393957623940044__
TGTCAGGCCTCTGAGCCGAAG---------------------------------------
-----------------------------CTCAGCCATTGTAACCCCTGTGACCTGCACA
TATATGTCCAGATGGCCTGCAGGAGCCAAGAAGT------------------CTGGGGCA
GCTG-AAA-AACCACACAAGAAGTA-AAACAGCC--------------------------
------------------AGTTCCTGCCTTAACTGATTAACCAACATTAC----------
---A--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CCACCATTGTGACCTGTCCCTGTCCTACCTTA
ACTGATCAATCGACC--------TT--GTGACAGTC-TTCTTCTGG---------ACAAT
GGGTCTTA------------TCATCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------ATG----TACCTTGTG--------------
---------------------------AC-CCCCTCCTC-TGCTAACAATAG-ATAA-CC
ACT-TTTTACTGTAATTTTCCATTACCTACCCA-ACTCCTATAA-----------AGCA-
ACCCCTTCC-C--CATCTCCCTTCACTGACTCTGTTTTCAGACTCAGCCCACTTGCACTC
AAGTG-------A-ATAAACAGCCTTGTTGCTCACACAAAGCCTG--TT---GGTGGTCT
CTTCACACAGATGTGCTTG-----A--C-
>LTR7C_chr11_Sltr_223__chr11_7808656378087032_+_
-GTCAGGCCTCTGCGCCGAAG---------------------------------------
-----------------------------CTCAGCCATTGTAACCCCTGTGACTTGCACA
TATGTGTCCAGATGGCCTGCAGGAGCCAAGAAGT------------------CTGGGGCA
GCTG-AAA-AACCACAAAAGAAGTA-AAACAGCC--------------------------
------------------AGTTCCTGCCTTAACAGATTAACCAACATTCC----------
---A--------------------------------------------------------
----------------------------------------------------------CC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CCACCATTGTGACTGGTCCCTGCCCTACCTTA
ATGGATCGATTGACC--------TT--GTGACATTC-TTCTTCTGG---------ACAAT
GAGTCTTA------------TGATCTCCCT-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------ATG----TACCTTGTG--------------
---------------------------AC-CCCCTCCTC-TGCTAACAATAG-ATAA-CC
ACC-TTTTAGTGTAATTTTCCATTACCTACCCA-ACTCCTATAG-----------GGCA-
ACCCCTTCC-C--CATCTCCCTTCGCTGACTCTCTTTTCAGACTCAGCCCACTTGCACCC
AAGTG-------A-ATAAACAGCCTTGTTGCTCACACAAAGCCTG--TT---GGTGGCGT
CTTCACACAGACATGCGTG-----A--CA
>LTR7C_chr17_Sltr_502__chr17_4037244740372915__
TGTCAGGCCTCTGAGCCGAAG---------------------------------------
-----------------------------CTCAGCCATTATAACCCCTGTGACCTGCACA
TACACGTCCAGATGGCCTGCAGGAGCCAAGAAGT------------------CTGGGGCA
GCTG-AAA-AACCACAAAAGAAGTG-AAACAGCC--------------------------
------------------AGTTCCTGCCTTAACTGATTAACCAACATTAC----------
---A--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CCACCATTGTGACTTGTCCCTGCCCTACCTTA
ACTGATCAATCGGCC--------TT--GTGACATTC-TTCTTCTGG---------ACAAT
GAGTCTTA------------TAATCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------ATG----TACCTTGTG--------------
---------------------------AC-CCCCTCCTC-TGCTAACAATAG-ATAA-CC
ACC-TTTTACTGTAATTTTCCATTACCTACCCA-ACTCCTATAA-----------AGCA-
ACCCCTTCC-C--CATCTCTCTTCATTGACTCTCTTTTCGGACTCAGCCCACTTGCACCC
AAGTG-------A-ATAAACAGCCTTGTTGCTCACACAAACCCTG--TT---GGTGGTCT
CTTCACATGGATGCGCTTG-----A--C-
>LTR7C_chr10_Sltr_129__chr10_130487053130487525_+_
-GTCAGGCCTCTGAGCCGAAG---------------------------------------
-----------------------------CTCAGCCATTATAACCTCTGTCACCTGCGCA
TACACATCCAGGTGGCTTGCAGGAGCCAGGAAGC------------------CTGGAGCA
GCCA-AAA-AACTAC-AAAGAAGTA-AAACAGCC--------------------------
------------------AGTTCCTGCCTTAACTGATTAACTAAAATTAC----------
---A--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------TTACTATTGTGACTTGTCCCTGCCCTACCTTA
GCTGATCAATCGACT--------TT--GTGACATTC-TTCTTCTGG---------ACAAT
GAGTCTTA------------CGATCTCTCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------ATG----CACCCTGCA--------------
---------------------------AC-CCCCTCCTT-TGCTAACAATAG-ATAA-CC
CCC-TTGTACTGTACTTTGCCATTAC-TACCCA-ACTCCTGTAA-----------AGCA-
ACCCCCTCC-C--CATCTCCCTTCGCTGACTCTCTTTTTGGACTCAGCCCATTTGCACCC
AAGCG-------A-ATCAACAGCTTTATTGCTCACACAAAGCCTG-TTT---GGTGGTCT
CTTCACACAGACGCACTTG-----A--CA
>LTR7C_chr20_Sltr_788__chr20_3699029836990771_+_
-GTCAGGCCTCTGAGCTGAAG---------------------------------------
-----------------------------CTCAGCCATTATAACCCCTGTGACCTGCACA
TACACATCTAGGTGGCCTGCAGGAGCCAAGAAGT------------------CTGGAGCA
GCAA-AAA-AACTAC-AAAGAAGTA-AAACAGCG--------------------------
------------------AGTTCCTGCCTTAACTGATTAACTAACATTAC----------
---A--------------------------------------------------------
----------------------------------------------------------AT
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------TTATTATTGTGACTTGTCCCTGCCCTACCTTA
GCTGATCAATCAACT--------TT--GTGACATTC-TTCTTCTGG---------ACAAT
GAGTCTTA------------TGATCTCTCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------ATG----CACCTTGTA--------------
---------------------------AA-CCCCTCCTC-TGCTAACAATAG-ATAA-CC
ACC-TTTTGCTATAATTTTCCATTACCTACCCA-ACTCCTATAA-----------AGCA-
ACCCATTCC-C--TATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACTTGCACCC
AAGTG-------A-ATAAACAGCTTTATTGCTCACACAAAGCCTG-TTT---GGTCGTCT
CTTCACACGGACTCACTTG-----A--CA
>LTR7C_chrX_Sltr_1538__chrX_21875762188047_+_
-GTCAGGCCTCTGAGCTGAAG---------------------------------------
-----------------------------CTCAGCCATTATCACTCCTGTGACCTGCACA
TATACATCCAGGTGGCCTGCAGGAGCCAAGAATT------------------CTGGAGCA
GCCA-AAA-AACTAC-AAAGAAGTT-AAACAGCC--------------------------
------------------AGTTCCTGCCTTAACTGATTAACTAAAATTAC----------
---A--------------------------------------------------------
----------------------------------------------------------AT
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------TTACTATTGTGACTTGTCCCTGCCCCAGTTTA
GCTGATCAATCAACT--------CT--GTGACATTC-TTCTTCTGG---------ACAAT
CAGTCTTA------------TGATCTCTCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------ATG----CACCTTGTA--------------
---------------------------AC-CCCCTCTTC-TGCTGACGATAG-ATAA-CC
ACC-TTTTGCTGTAATTTTCCATTACCTACCCA-GCTCCTGTAA-----------AGCC-
ACACCTTCC-C--CATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACTTGCACCC
AAGTG-------A-ATACACAGCTTTATTGCTCACACAAAGCCTG-TTT---GGTGGTCC
CTTCA--CGGACGCGCGTG-----A--CA
>LTR7C_chrY_Sltr_1607__chrY_21875762188047_+_
-GTCAGGCCTCTGAGCTGAAG---------------------------------------
-----------------------------CTCAGCCATTATCACTCCTGTGACCTGCACA
TATACATCCAGGTGGCCTGCAGGAGCCAAGAATT------------------CTGGAGCA
GCCA-AAA-AACTAC-AAAGAAGTT-AAACAGCC--------------------------
------------------AGTTCCTGCCTTAACTGATTAACTAAAATTAC----------
---A--------------------------------------------------------
----------------------------------------------------------AT
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------TTACTATTGTGACTTGTCCCTGCCCCAGTTTA
GCTGATCAATCAACT--------CT--GTGACATTC-TTCTTCTGG---------ACAAT
CAGTCTTA------------TGATCTCTCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------ATG----CACCTTGTA--------------
---------------------------AC-CCCCTCTTC-TGCTGACGATAG-ATAA-CC
ACC-TTTTGCTGTAATTTTCCATTACCTACCCA-GCTCCTGTAA-----------AGCC-
ACACCTTCC-C--CATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACTTGCACCC
AAGTG-------A-ATACACAGCTTTATTGCTCACACAAAGCCTG-TTT---GGTGGTCC
CTTCA--CGGACGCGCGTG-----A--CA
>LTR7C_chr7_Sltr_1339__chr7_3665979436660261_+_
-GTCAGGCCTCTGAGCCGAAG---------------------------------------
-----------------------------CTCGGCCATTATAACCCCTGTGACCTGCACA
TATCCGTCTAGATGGCCTGCAGGAGCCAAGAAGT------------------CTGGAGCA
GCCA-AAA-AACTAC-AAAGAAGTA-AAACAGCC--------------------------
------------------AGTCCCTGCCTTAACTGA----GTAAAATTAC----------
---A--------------------------------------------------------
----------------------------------------------------------AT
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------TTACTATCGTGACTTGTCCCTGCCCTATCTTA
GTTGATCATTTGACT--------TT--GTGACATTC-TTCTTCTGG---------ACAAT
AAGTCTTA------------TGATCTCTCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------ATG----TACCTTGCA--------------
---------------------------AC-CCTCTCCTC-TGCTAACAGTAA-ATAA-CT
ACC-TTTTATTGTAATTTTCCATTACCTACCCA-ACTCCTATAA-----------AGCA-
ACCGCTTCC-C--CATCTCCCTTCGCTGACTGTCTTTTCGGACTCAGCCCACTTGCACCC
AAGTG-------A-ATAAACAGCTTTATTGCTCACGCAAAGCCTG-TTT---GGTGGTCT
CTTCACACGGACGTGCTTG-----A--CA
>LTR7C_chrX_Sltr_1541__chrX_278908279378__
TGTCAGGCCTCTGAGCCGAAG---------------------------------------
-----------------------------CTCAGCCATTATCACCCCTGTGACTTGCACA
TATACGTCCAGGTGGCCTGCAGGAGCCAAGAAGT------------------CTGGAGCA
GCCA-AAA-AACCAC-AGAGAAGTA-AAACAGCC--------------------------
------------------AGTTCCTGCCTTAACTGGTTAACTAAAATTAC----------
---A--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------TTACTATCGTGAGTTCTCCCTGCCCTACCTTA
GCCGATCAATCGACT--------TT--GTGCCGTTC-GTCCTCTGG---------ACAAT
GAGTCTTA------------TGATCTGTGC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------ACG----CACCTTGCA--------------
---------------------------AT-CC-CTCCTC-TGCTGACAATAG-ATAA-CC
ACC-TTTTGCTGTAATTTTCCATTACCTACCCA-ACTCCTATTG-----------AGCC-
ACCCCTCCC-C--CATCTCCCTTCGCTGACTCTCTCTTCGGACTCAGCCCACTTGCACCC
AAGTG-------A-ATGAACCGCTTTATCGCTCACACAAAGCCTG-TTC---GGGGGTCT
CTTCGCACCGACGCGCTTG-----A--C-
>LTR7C_chrY_Sltr_1608__chrY_278908279378__
TGTCAGGCCTCTGAGCCGAAG---------------------------------------
-----------------------------CTCAGCCATTATCACCCCTGTGACTTGCACA
TATACGTCCAGGTGGCCTGCAGGAGCCAAGAAGT------------------CTGGAGCA
GCCA-AAA-AACCAC-AGAGAAGTA-AAACAGCC--------------------------
------------------AGTTCCTGCCTTAACTGGTTAACTAAAATTAC----------
---A--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------TTACTATCGTGAGTTCTCCCTGCCCTACCTTA
GCCGATCAATCGACT--------TT--GTGCCGTTC-GTCCTCTGG---------ACAAT
GAGTCTTA------------TGATCTGTGC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------ACG----CACCTTGCA--------------
---------------------------AT-CC-CTCCTC-TGCTGACAATAG-ATAA-CC
ACC-TTTTGCTGTAATTTTCCATTACCTACCCA-ACTCCTATTG-----------AGCC-
ACCCCTCCC-C--CATCTCCCTTCGCTGACTCTCTCTTCGGACTCAGCCCACTTGCACCC
AAGTG-------A-ATGAACCGCTTTATCGCTCACACAAAGCCTG-TTC---GGGGGTCT
CTTCGCACCGACGCGCTTG-----A--C-
>LTR7C_chr2_Sltr_657__chr2_128489985128490438_+_
-GTCAGG-CTCTGAGCCAAAG---------------------------------------
-----------------------------CTCAGCCATTATAACCTCTGTGACCTGCACA
TACACATCCAGGTGGCCTGCAGGAGCCAAGAAAT------------------GGGGAGCA
GTCA-AAA-AACCAC-AAAGAAGGA-AAACAGCC--------------------------
------------------AGTTCCTGGCTTAACTGATTAACCAACATTAC----------
---A--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------TTACTATTGTGACTTGTCGCTGCCCTACCTTA
GCTGGCCAATCGACT--------TT--GTGACATTC-TTCTTCTGG---------ACAAT
GAATCTTA------------TGATCTCTCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------ATG----TACGTTGTA--------------
---------------------------AC-CCCCTCCTC-TGCTAACA-----ATAA-CC
ACA-TTTTACTGTAATTTTCCATTACCTACCCA-ACTCC---------------------
----CTTCC-C--CATTTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACTTGCACCC
AAGTG-------A-ATAAACAGCTTTATTGCTCACACAAATCCTG-TT----GGTGGTCT
CTTCACACGGACGTGCTTG-----A--CA
>LTR7C_chr2_Sltr_717__chr2_222670573222671040_+_
-GTCAGGCCTCTGAGCCAAAG---------------------------------------
-----------------------------CTCAGCCATTATAACCTCTGTGACCTGCATG
TACACATCCAGGTGGCCTGCAGGAGCCAAGAAGC------------------CTGGAGCA
GCAA-AAA-AAACGC-AAAGAAGTA-AAACAGCC--------------------------
------------------AGTTCCTGCCTTAACTGATTAACCAACATTAC----------
---A--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------TTACCATTGTGACTTGTCCCTGCCCTACCTTA
GCCGATCAATCGACT--------TT--GTGACATTC-TTCTTCTGG---------ACAAT
GAGTCTTA------------TGATCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------CTG----TACCTTGTG--------------
---------------------------AC-CCCTTCCTC-TGCTAACAATAG-ATAA-CC
ACC-TTCTACTGTAATTTTCCATTACCTAGACA-ACTCCTATAA-----------AGCA-
ACCCCTTCC-C--CATCTCCCTTCGCTGACTCTTT-TTCGGACTCAGCTGACTTGCACCT
AAGTG-------A-ATAAACAGCCTTGTTGCTCACACAATGCCTG-TT----GGTGGTCT
CTTCACACGGATGCGCTTG-----A--CA
>LTR7C_chr4_Sltr_1040__chr4_189391968189392437__
TGTCAGGCCTCTGAGCCAAAG---------------------------------------
-----------------------------CTCAGCCATTATAACCCCTGTGACCTGCACA
TACACATCCAGGTGGCCTGCAGGAGCCAAGAAGT------------------CTGGAGCA
GCGA-AAA-AACCCC-AAAGAAGTA-AAACAGCC--------------------------
------------------AGTTCCTGCCTTACCTGATTAACCAAAATTAC----------
---A--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------TTACCATTTTGACTTGTCCCTGCCCTACCTTA
GCTGATCAATCGACT--------TT--GTGACATTC-CTCTTCTGG---------ACAAT
GAGTCTTA------------TGATCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------ATG----TACCTTGTA--------------
---------------------------AC-CCCCTCCTC-TGCTAACAATAG-ATAA-CC
ACC-TTTTACTGTAATTTTCCATTACCTACCCA-ACTCCTATAA-----------AGCA-
ACCCCTTCC-C--CATCTCCCGTCGCTGACTCTCTGTTTGGACTCAGCCCATTTGCACCC
AAGTG-------A-ATAAACATCCTTGTTACTCACACAAAGCCTG-TTT---GGTGGTCT
CTTCACACGGACGCGCTTG-----A--C-
>LTR7C_chr7_Sltr_fr_1355__chr7_8482310784823571_+_
-GTCAGGCCTCTGAGCCAAAG---------------------------------------
-----------------------------CTCAGCCATTATAACCTCTGTGACCTGCACA
CACACATCCAGGTGCCCTGCAGGAGCCAAGAAGT------------------CTGGAGCA
GCCA-AAA-AACCAC-AAAG---TC-AAACAGCC--------------------------
------------------AGTTCCTCCCTTAACTGATTAGCCAAAATTAC----------
---A--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------TTACCATTGTGACTTGTCCCTGCCCTACCTTA
GCTGATCAGTCAACT--------TT--ATGACATTC-TTCTTCTGG---------ACAGT
AAGTCTTA------------TGATCTTCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------ATG----TACCTTGTG--------------
---------------------------AC-CCCCTCCTC-CTCTAACAATAG-ATAG-CC
ACC-TTTTACCGTAATTTTCCATTACCTATCCA-ACTCCTATAA-----------AACA-
ACCTCTTCC-C--CATCTCCCTTCGCTGACTTTCTTTTCGGACTCAGCCCACTTGCAGCC
AAATG-------A-ATAAAAAGCTTTATTGCTCACACAAAGCCTG-TTT---GGTGGTCT
CTTCACATGGACGTGCTTG-----A--C-
>LTR7C_chrX_Sltr_1507__chrX_116014369116014836_+_
-GTCAGGCCTCTGAGCTGAAA---------------------------------------
-----------------------------CTCAGCCATTATAACTTCTGTGACCTGCACA
TACACATCCAGGTGGCCTGCAGGAGCCAAGAAGT------------------CTGGAGCA
GCCA-AAA-AATCAC-AAAGATGTA-AAACAACC--------------------------
------------------AGTTCCTGCCTTAACTGATTAACCAAAATTAC----------
---A--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------TTACCATTGTGACTTGTCCCTGCCCTACCTTA
GCTGATCAATCAACT--------TT--GCAACATTC-TTCTTTTGG---------ACAAT
GAGTCTTA------------TGATCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------ATG----TACCTTGTG--------------
---------------------------AC-CCCC-CCTC-TGCTAACAATAG-ATAA-CC
ACC-TTTTACTGTAATTTTCCATTACCTACCCA-ACTCCTATAA-----------AGCA-
AACCCTTCC-C--CATCTCCCTTCACTGACTCTCTTTTCAGACTGAGCCCACTTGCACCC
AAGTG-------A-ATAAACAGTCTTATTGCTCACACAAAGCCTG-TTT---GTTGGTCT
CTTCACATGGACGCGCTTG-----A--CA
>LTR7C_chr3_Sltr_827__chr3_118146452118146919__
TGTTAGGCCTCTGAGCCGAAG---------------------------------------
-----------------------------CTCAGCCATTATAACCCCTGTGAGCTCCACA
TATACATCCAGGTGGCCTGCAGGAGCCAAGAAGT------------------CTGGAGCA
GCCA-AAA-AACCAC-AAAGAAGTA-AAACAGCC--------------------------
------------------AGTTCCTGCCTTAACTGAATAACCAGCATTAC----------
---A--------------------------------------------------------
----------------------------------------------------------GC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------TTACTACTGTGACTTGTCCCTGCCTTACCTTA
GCTGATCAATTGACT--------TT--GTGACATTC-TTCTTCTGG---------ACAAT
GAGTCTTA------------TGATCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------ATG----TACCTTATG--------------
---------------------------AC-CCCCTCCTC-TGCTAACAATAG-ATAA-CC
ACC-TTTCACTGTAATTTTCCATTACCTACCCA-ACTCCTATAA-----------AACA-
ACCCTTTTC-C--CATCTCTCTTCGCTGACTTTCTTTTCGGACT-AGCCCACTTGCACCC
AAGTG-------A-ATAAACAGCTTTATTACTCACACAAAGCCTG-TTT---GGTGGTTT
CTTCACATGGACATGCTTG-----A--C-
>LTR7C_chr10_Sltr_142__chr10_4605455546055019__
TGTCAGGCCTCTGAGCTGAAG---------------------------------------
-----------------------------CTCAGCTATTATAACCCCTGTGACCTGCACA
TATATGTCCAGATGGCCTGCAGGAACCAAGAAGT------------------CTGGAGCA
GCCA-AAA-AACCAC-AAAG---TA-AAACAGCC--------------------------
------------------AGTTCCTGCCTTAACTGAGTAACCAAAATTAC----------
---A--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------TTACCATTGTGACTTGTCCCTGCCCTACCTTA
GCTGATCAACCAACT--------TT--GTGACATTC-TTCTTCTGG---------ACAAT
GAGTCTTA------------TGATCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------ATG----TACCTTGTG--------------
---------------------------AC-CCCCTCCTC-TGCTAACAATAG-ATAA-CC
ACG-TTTTACTGTAACTTTCCATTACCTACCCA-ACTCCTATAA-----------AGCA-
ATCCCTTCC-C--CATCTCCCTTTGCTGACT--CTTTTCGGACTCAGCCCACCTGCACCC
AAGTG-------A-ATTAAAAGTTTTATTCCTCATACAAAGCCTG-TTT---GGTGGTTT
CTTCACATGGACGTGCTTG-----A--C-
>LTR7C_chr8_Sltr_fr_1387__chr8_137227737137228202_+_
-GTCAGACCTCTAAGCTGAAG---------------------------------------
-----------------------------CTCAGCCATTATAATCCCAGTGACCTGCACA
TATATGTCCAGATGGCCTGCAGGAGC-AAGAAGT------------------CTGGAGCA
GCCA-AAA-AACCAC-AAAGAAGTA-AAACATCC--------------------------
------------------AGTTCCTGCCTGAACTGATTAACCAACATTAC----------
---A--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CTACCACTGTGACTTGTCCCTGCCCTACCTTA
GGTGATCAATAGACT--------TT--GTGACATTC-TTCTTCTGG---------ACAAT
GAGTCTTA------------TGATCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------ATG----TACCTTGTG--------------
---------------------------AC-CCCCTCTTC-TGCTAACAATAG-ATAA-CC
ACC-TTTTACTGTAATTTTCCATTACCTACCCA-ACTCCTATAA-----------AACA-
ACCCCTTCC-C--CATCTCCCTTCACTGACTCACTTTTTGGACTCAGCCCACCTGCACCC
AGGTG-------A-ATTAAAAGCTTCATTGCTCACCCAAAGCCTG-TTT---GGTGGTCT
CTTCACATGGACGTGCTTG-----A----
>LTR7C_chr10_Sltr_133__chr10_1858295018583421_+_
-GTCAGGCCTCTGAGACGAAG---------------------------------------
-----------------------------CTCAGCCATTATAACCCCTGTGACCTGCACA
TACACATCCAGATAGCCTGCAGGAGCCAAGAAGT------------------CTGGAGCA
GTCA-AAA-AACCAC-AGCCAAAAA-CCACAGCC--------------------------
------------------AGTTCCTGCCTTAACTGATCAACTAAAATTAT----------
---A--------------------------------------------------------
----------------------------------------------------------AT
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------TTACTATTGTGACGTGTCCCTGCCCTACCTTG
GCTGATCAGTCAACT--------TT--GTGACATTC-TTCTTCTGG---------ACAAT
AAGTCTTA------------GGATCTCTCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------ACG----CATCTTGTA--------------
---------------------------AC-CCCCTCCTC-TGCTAACAATAG-ATAA-CC
ACC-TTTTACCGTAATTTGCCATTACCTACCCA-ACTCCTATAA-----------GGCA-
ACCCCTTCC-T--TATCTCCCTTTGCTGACTCCCTTTTCGGACTCAGCCCACCTGCACCC
AGGTG-------A-ATTAAAAGCTTTGTTGCTCACACAAAGCCTG-CTT---GGTGGTCT
CTTCACACAGACGCGGTTG-----A--CA
>LTR7C_chr11_Sltr_fr_184__chr11_1688897616889407_+_
-GTCAGGCCTCTGAGCTGAAG---------------------------------------
-----------------------------CTCAGCTATTGTAACCCCTGTGACCTGCACA
TATACACCCAGATGGCCTGAAGGAGCCAAGAAGT------------------CTGGGGCA
GCCG-AAA-AACCACAAAAGAAGTA-AAACAGCC--------------------------
------------------AGTTCCTGCCTTAACTGATTAACCAACATTAC----------
---A--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CCACCATTGTGACTTGTCCCTGCCCCACCTTA
ACCGATCAATCAACT--------TT--GTGACATTC-TTCTTCTGG---------ATAAT
AAGTCTTA------------TGATCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------ATG----TACCTTGTG--------------
---------------------------AC-CTCCTCCTC-TGCTAACAATAG-ATGA-CC
ATC-TTTTACCGTAATTTTCCATTACCTACCCA-ACTCCTATAA-----------AGCA-
ACCCCTTCC-C--CATCTCCCTTCGCTGACTCCTTTCTCAGACTCAGTCCACCTGCACCC
AGGTG-------A-ATTAAAAGCTTTATTGCTCAAAAAAA--------------------
-----------------------------
>LTR7C_chr19_Sltr_600__chr19_5434794954348418__
TGTCAGGCCTCTGAGCTGAAG---------------------------------------
-----------------------------CTCAGCTATTGTAACCCCTGTGACCTGCACA
TATACACCCAGATGGCCTGAAGGAGCCAAGAAGT------------------CTGGGGCA
GCCG-AAA-AACCACAAAAGAAGTA-AAACAGCC--------------------------
------------------AGTTCCTGCCTTAACTGATTAACCAACATTAC----------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CCACCATTGTGACTTGTCCCTGCCCCACCTTA
ACCGATCAATCAACT--------TT--GTGACATTC-TTCTTCTGG---------ATAAT
AAGTCTTA------------CGATGTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------AGG----TACCTTGTG--------------
---------------------------AC-CTCCTCCTC-TGCCAACAATAG-ATGA-CC
ACC-TTTTACCGTAATTTTCCATCACCTACCCA-ACTCCTATAA-----------AGCA-
ACCCCTTCC-C--CATCTCCCTTCGCTGACTCCTTTCTCAGACTCAGTCCACCTGCACCC
AGGTG-------A-ATTAAAAGCTTTATTGCTCATACAAAGCCTG-TTT---GCTGGTCT
CTTCACATGGACACGCTTG-----G--C-
>LTR7C_chr6_Sltr_1217__chr6_143064809143065278__
TGTCAGGCCTCTAAGCCGAAG---------------------------------------
-----------------------------CTCAGCCATTGTAACCCCTGTGACCTACACA
TATACATCCAGATGGCCTGCAGGAGCCAAGAAGT------------------CTGGGGCA
ACCG-AAA-AACCACAAAAGAAGTA-AAACAGCC--------------------------
------------------AATTCCTGCCTTAACTGATTAACCAACATTAC----------
---A--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CCACCGTTGTGACTTGTCCCTGCCCTACCTTA
ACTGATCAACCGACC--------TT--GTGACATTC-TTCTTCTGG---------ACAAT
AAGTCTTA------------TGATCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------ATG----TACCTTGTC--------------
---------------------------AC-CCCCTTCTC-TGCTAACAATAA-ATAA-CC
ACC-TTTTACTGTAATTTTCCATTAGCTACCCA-ACTTCTATAA-----------AGCA-
ACCCCTTCC-C--CATCTCCCTTCGCTGACTCCTTTCTCAGACTCAGTCCGCCTGCACCC
AGGTG-------A-ATTAAAAGCTTTATTGCTCACACAAAGCCTG-TTT---GGTGGTCT
CTTCACACAGACACGCTTG-----A--C-
>LTR7C_chr16_Sltr_473__chr16_31636103164081_+_
-GTCAGGCCTCTGAGCTAAAG---------------------------------------
-----------------------------CTCAACCATTATAACCCCTGTGACCTGCACA
TATACGTGCAGATGGCCTGCAGGAGCCAAGAAGT------------------CTGAAGAA
GCCA-AAA-AAACCACAAAGAAGTA-TAACAGCC--------------------------
------------------GGTTCCTGCCTTAAGTGATTAACCAACATTAC----------
---A--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CTACCACTGTGACTTGTCCCTGCCCTACCTTG
GCTGATCAATCGACT--------TT--GTGACATTC-TTCTTTTGG---------ACAAT
AAATCTTA------------TGACCTCCCT-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------ACA----TACCTTGTG--------------
---------------------------AC-CCCCTCCTC-TGCTAACAATAG-ATAA-CC
ACC-TTTTACTGTAATTTTCCATTACCTACCCA-ACTCCTACAA-----------AGCA-
ACCCCTTCC-C--CATCTCCCTTCGCTGACTCCTTTTTCGGACTCAGTCCGCCTGCACCC
AGGTG-------A-TTAAAAAGTTTTACTGCTTACACAAAGCCTG-TTT---GGTGGTCT
CTTCTCACAGATGTGCTTG-----A--CA
>LTR7C_chrX_Sltr_1539__chrX_2240435222404814_+_
-GTCAGGCCTCTGAGTTGAAG---------------------------------------
-----------------------------CTCAGCCATTGTAACCCCTGTGACCTGCATG
TATGTGTCCAGATGGCCTGCAGGAACCAAGAAGT------------------CTGGGGCA
GCC--AAA-AACCAC-AAAGAAGTA-AAACAGCC--------------------------
------------------AGTTTCTGCCTTAACTAATGAACCAACATTAC----------
---A--------------------------------------------------------
----------------------------------------------------------CC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CTACTATTGTGGCTTGACCCTGCCATACTTT-
---GATCAGT-GACT--------TG--GTGACATCC-TTCTTCTGG---------ACAAT
GAGTCTTA------------TGATCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------GCG----CACCTTGTG--------------
---------------------------AC-CTCCTCCTC-TGCCAACAATAG-ATAA-CC
GCC-TTTTACTGTAATTTTCCATTACCTACCCA-ACTCCTATAA-----------AGCA-
ACCCCTTCC-C--CATCTCCCTTCGCTGACTCTCTCTTTGGACTCAGCCCACTTGCACCC
AAGTG-------A-ATAAACAGCCTTGTTGCTCACACAAAGCCTG--TT---GGTGGTCT
CTTCATAAGGACGCGCTTG-----A--CA
>LTR7C_chr2_Sltr_715__chr2_217332781217333210__
TGTCAGGCCTCTGAGCCCAAG---------------------------------------
----------------------------------------------------CCTGCACG
TATGCATCCAAATGGC------------------------------------CTGAGGCA
ATC--GAA-AACAACAAAAGAAGTG-AAACAGCC--------------------------
------------------AGCTCCTGTCTTAACTGATTGACCAACCTTAA----------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------CCATTATGACTTGTTCCTGCCCTGCCCCA
ACTGATCAATCGACC--------TC--ATGACATTC-TTCTTCTGG---------ACAAT
GAGTCTTA------------TGATCTCCGC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------ATG----TGCCTTGTG--------------
---------------------------AC-CCCCTCCTC-CGCCAGCAATAG-ATAA-CC
ACC-TTTTACTGTAATTTTCCATTACCCACCCA-ACTCCTATAA-----------AGCA-
ATCCCTTCC-C--CA--CTCCTTCACGGACTCTCTTTTCGGACTCAGCCCACTTGCACCC
GAGTG-------A-ATAAACAGCCTTGTTGCTCACACAAAGCCTG--TT---GGTGGTCT
CTTCACATGGATGTGCTTG-----A--C-
>LTR7C_chr1_Sltr_39__chr1_212429923212430394__
TGTCAGGCCTCTGAGCTGAAG---------------------------------------
-----------------------------CTCAGCCATTGTAACCCTTGTGACCTGCACC
TATAAGTCCAGATGGCCTGCAGGAGCCAAGAAGT------------------CTGGAGCA
GCC-AAAA-AAACACAAAAGAAGTG-CAACAAAA--------------------------
------------------AGCTCCTGCCTTGACTGATTGACCAGCCTTAC----------
---G--------------------------------------------------------
----------------------------------------------------------AC
GTT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CCACCATTATGAATTGTTCCTGTCCTGCCCCA
ACTGATCAATCGACC--------TT--GTGACATTC-TTCTTCTGG---------ACAAT
GAATCTTA------------TGATCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------ATG----GACCCTGTG--------------
---------------------------AC-CCCCTCCTC-TGCTGACAATAG-ATAA-CC
ACC-TCTAACTGTAACATTCCACTGCCTACCTC-AGTCCTATAA-----------AGCT-
GCCCCTCTC-C--TATCTACCTTCGCTGACTCTCTTTTCGTACTCAGCCCACTTGCACCC
AAGTG-------A-ATAAACAGCCCTGTTGCTCACACAAAGCCTG--TTTA-GGTGGTCT
-TCTATACGGACACATGTG-----A--C-
>LTR7C_chr7_Sltr_1325__chr7_150312817150313286_+_
-GTCAGGCCTCTGAGCTGAAG---------------------------------------
-----------------------------CTCAGCCATTGTAACCCCTGTGACCTGCACA
TATATGTCCAGATGGCCTGCAGGAGCCAAGAAGT------------------CTGGAGCA
GCT-GAAA-AACCACAAAAGAAGTG-AAACAGCC--------------------------
------------------AGCTCCCGCCTTAACTGATTGACCAACCTTAT----------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CCACCATTATGACTTGTCCTGGCCCTGCCCCA
ACTGATTAATTGACC--------TT--GTGACATTC-TTCTTTTGG---------ACAAT
GAATCTTA------------TGATCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------ATG----CACCCCGTA--------------
---------------------------AC-CCCCTCCTC-TGCTAACAATAT-ATAA-CC
ACC-TTTAACTGTAACTTTCCACTACCTACCCA-AGTCCTATAA-----------AGCT-
GCCTCTCTC-C--TACCTCCCTTCGCTGACTCTCTTTTCAGACTCAGCCCACTTGCACCC
AAGTG-------A-ATAAATAGCCTTACTGCTCACACAAAACCTG--TTTA-GGTGGTCT
-TCTCTACGGACACACGTG-----A--CA
>LTR7C_chr14_Sltr_420__chr14_8627046686270931_+_
-GTCAGGCCTCTGAGCCAAAG---------------------------------------
-----------------------------CTCAGCCATTATAACCCCTGTTACCTGCACA
TATATGTCCAGATGGCCTGCAGGAGCCAAGAAGT------------------CTGGAGCA
GCC-AAAA-AACCACAAAAGAAGTG-AAACAGCC--------------------------
------------------AGCTCCTGCCTTAACTGATTGACCAACCTTAT----------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CCACCACTGTGACTTGTTCCTGCCCTGCCCCA
ACTGATCAATCAACC--------TT--GTGACATTC-TTC---TGG---------ACAAT
AAGTCTTA------------TGATCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------ATG----AACCTTGTG--------------
---------------------------AC-C-CCTCCTC-TGCTAATAATAG-ATAA-CC
ACC-TTTAACTGTAACTTTCCACTGCCTACCCA-AGCCCTATAT-----------TGCT-
GCCCCTCTC-C--TATCTCCCTTCACTCACTCTCTTTTCAGACTCAGCCCACTTGCACCC
AAGTG-------A-ATAAACAGCCTTGTTGCTCACACGAAGCCTG--TTTA-GGTGGTCT
-TCTATATGGATACTCATG-----A--CA
>LTR7C_chr10_Sltr_fr_125__chr10_112328423112328890_+_
--TCAGGCCTCTGAGCCAAAG---------------------------------------
-----------------------------CTCAGCCATTGTAACCCATGTGACCTGCACA
TGTATGTCCAGATGGCCTGCAGGAGCCAAGAAGT------------------CTGGAGTA
GCT-GGAA-CACCACA-AAGAAGTG-AAACAGCC--------------------------
------------------AGTTCCTGCCTTAACTAATTAACCCACCTTAT----------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CTACCATTATGACTTGTTCCTACCCTGCCCCA
ACTGATCAATTGACC--------CT--GTGACTTTC-TTCTTCTGG---------ACAAT
GAGTCTTA------------TGATCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------ATA----CACCTTGTG--------------
---------------------------AC-CCCCTCCCC-TGCTAACAATAG-ATAA-CC
ACC-TCTAACTGTAACTTTCCACTGCCTACCCC-AGTTCTATAA-----------AGCT-
ACCCCTCTC-C--TACCTCCCTTCACTGACTCTCTTTTTGGACTCAGCCCACTTGCATCC
AAGTG-------A-ATAAACAGCCTTGTTGCTCACACAAAGCCTG--TTTA-GGTGGTCT
-TCTATACGGACACGTGTG-----A--TA
>LTR7C_chr18_Sltr_529__chr18_17857531786220__
TGTCAGGCCTCTGAGCCAAAG---------------------------------------
-----------------------------CTCAGCCATTGTAACCCCTGTGACCTGCCCA
TATATGTCCACATGGCCTGCAGGAGCCAAGAAGT------------------CTGGAACA
ACC-GAAA-AACCACAAAAGAAGTG-AAACAGCC--------------------------
------------------AGCTCCTGCCTTAATTGATTGACCAACCTTAC----------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CCACCATTATGACTTGTTCTTGCCCTGCCCCA
ACTCATCAATCGACC--------TT--GTGACATTC-TTCTTCTGG---------ACAAC
GAGTCTTA------------TGATCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------ATA----CAACTTGTG--------------
---------------------------AC-CTTCTCCCC-TGCTAACAATAG-ATAA-CC
ACC-TCTAACTGT-ACTTTCCACTGCTTACCCC-AGTCCTATAA-----------AGCT-
GCCCCC-TC-C--TATCTCCCTTCACTGACTCTCTTTTTGGACTCAGCCCAGTTGCACCC
AAGTG-------A-ATAAACAGCCTTGTTGCTCACACAAACCCTG--TTTA-GGTGGTCT
-TCCATACGGACACGCATG-----A--C-
>LTR7C_chr3_Sltr_934__chr3_6358291263583377__
TGTCAGGCCTCTTAGCCAAAG---------------------------------------
-----------------------------CTCAGCCATTGTAACCCCTGTGGCCTGCACA
TATATGTCCACATGGCCTACAGGAGCCAAGAAGT------------------CTGGAGCA
GCT-GAAA-AACCACAGAAGAAGTG-AAACAGCC--------------------------
------------------ATCTCCTGCCTTAACTGATTGACCAACCTTAT----------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CCACCATTATGACTTGTTCCTGCCCTGCCCCA
ACTGATCAACTGACC--------TT--GTGACATTC-TTCTTCTGG---------ACAAT
GAGTCTTA------------TGATCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------ATG----CACTTTGTG--------------
---------------------------AC-CTTCT---C-TGCTAACAATAG-ATAA-CC
ACC-TCAGTCTGTAACTTTCCACTGCCTACCCC-AGTCCTATAA-----------AGCT-
GCCCCTTTC-C--TGTCTCCCCTCGCTGACT-TCTTTTTGGACTCAGCCCACATGCACCC
AAGTG-------A-ATCAACAGCCTTGTTGCTCACACAAAGCCTG--TTTA-GGTGGTCT
-TCTATACGGACACGCGTG-----A--C-
>LTR7C_chr2_Sltr_646__chr2_101248690101249149__
TGTCAGGCCTCTGAGCCAAAG---------------------------------------
-----------------------------CTCATCCGTTGTAACCCCTGTGACCTGCAC-
-----GTCCAGATGGCCTGCAGGAGCCAAGAAGT------------------CTGGAGCA
GCC-AAAA-AACCACAAAAGAAGTG-AAACAGCC--------------------------
------------------AGTTCCTGCCTTAACTAATTAATCCACCTTAT----------
---G--------------------------------------------------------
----------------------------------------------------------GC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CTACCATTATGACTTGCTCCTGCCCTGCCCCA
ACTAATCAATTGACC--------TC--GTGACATTC-TTCTTCTGG---------ACAAT
GAGTTTTA------------TGATCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------ATG----CACCTTGTG--------------
---------------------------AC-CCCCTCCTC-TGCTGACGATAG-ATAA-CC
ACC-TTTAACTGTAACTTTCCACTGCCTACCCA-AGCCCTATAA-----------AGCT-
GCC-CTTTC-C--TATCTCCCTTCGCTGACTCTCTTTTTGGACTCATCCCACTTGCACCC
AAGTG-------A-ATAAACAGCCTTGTTGCTCACACAAAGCCTG--TTTA-GGTGGTTT
----ATATGGACACACGTG-----A--C-
>LTR7C_chr4_Sltr_1052__chr4_3477335934773845__
TGTCAGACCTCTGAGCCGAAG---------------------------------------
-----------------------------CTCAGCCATTGTAACCCCTGTGACCTGCATA
TATACGTCCAGTTGGCCTGCAGGAGCCAAGAAGT------------------CTGGAGCC
ATC-GAAA-AACCACA-AAGAAATG-AAACAGCC--------------------------
------------------AGTTCCTGCTTTAACTAATTAACCCACCTTAG----------
---G--------------------------------------------------------
----------------------------------------------------------GC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CTACCATTATGACTTGTTCCTGCCCTGCCCCA
ACTGATCAATCGACC--------CT--GTGACATTC-TTCTCCTGG---------ACAAT
GACTCCCA------------TCATCGCTCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------ATG----CACCTTGTG--------------
---------------------------AC-CCCCTCCCC-TGCTAACAATAG-ATAA-CC
ACC-TTTAACTGTAACTTTCCACTGCCTACCCA-AGCCCTATAA-----------AACT-
GCCCCTC-G-C--TATCTCCCTTCGCTGACTCTCTTTTCAGACTCAGCCAACTTGCACCC
AAGTG-------A-ATAAACAGCCTTGTTGCTCACACTAAACCTG--TTTA-GGTGGTCT
-TCTATACGGACACACATG-----A--C-
>LTR7C_chr12_Sltr_257__chr12_128019852128020321__
TGTCAGGCCTCTGAGCCAAAG---------------------------------------
-----------------------------CTCAGCCATTGTAACCCCAGCGACCTGCACA
TATACGTCCAGATGGCCCACAGGAGCCAAGAAGT------------------CTGGAGTA
GCC-GAAA-AACCAC-AAAGAAGTG-AAACAGAC--------------------------
------------------AGTTCCTGCCTTAACTAATTAACCCACCTTAC----------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CTACCATTAAGACTTGTTCCTGCCCCGCCCCA
ACTGATCGATCGACC--------CT--GTGACATTC-TTCT---GG---------ACAAT
GAGTCCCA------------TGATCTCTCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------ATG----CACCTTGTG--------------
---------------------------AC-CCCCTCCCC-TGCTGACAACAG-ATAA-CC
ACC-TTTAACTGTAGCTTTCCACTGCCTACCCA-GGCCCTATAA-----------AGCT-
GCCCCTGTC-C--TATCTCCCTTCACTGACTCTCTTTTCGGGCTCAGCCCACTTGCACCC
AAGTG-------A-ATAAACAGCCTTGTTGCTCACACAAAGCCTG--TTTA-GGTGGTCT
-TCTATACGCACACGCGTG-----A--C-
>LTR7C_chr19_Sltr_595__chr19_4826971748270187_+_
-GTCAGGCCTCTGAGCCGAAG---------------------------------------
-----------------------------CTCAGCCATTGTAACCCCTGTGACCTACACA
TATACGTCCAGATGGCCTGCAGGAGCCAAGAAGT------------------CTGGAGCA
GCC-GAAA-AACCAC-AAAGAAGTG-AAACAGCC--------------------------
------------------AGTTCCTGCCTTAACTGATTAACCCACCTTAT----------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CCACCATTATGACTTGTTCCTGCCCTGCCCCA
ACTGATCAGTCGACC--------CT--GTGACATTC-TTCTCCTGG---------ACAAT
GAGTCCCA------------TGATCTCTCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------A---------ATG----CACCTTGTG--------------
---------------------------AG-CCCCTCCCC-TGCTGACAACAA-ATAA-CC
ACC-TTTAACTGTAACTTTCCACTGCCTACCCC-AGCCCTATAA-----------AGCT-
GCCCCTCTC-C--TATCTCCCTTCGCTGACTCTCTTTTCCAACTCAGCCCACTTGCACCC
AAGTG-------A-ATAAACAGCCTTGTTGCTTACACAAAGCCTG--TTTA-GGTGGTCT
-TCTATACGGACACGCGTG-----A--CA
>LTR7C_chr19_Sltr_fr_557__chr19_1507028915070754__
-GTCAGGCCTCTGAGCCGAAG---------------------------------------
-----------------------------CTCAGCCATTGTAACTCCTGTGACCTGCACA
TATACGTCTAGATGGCCTGCAGGAGCCAAAAAAT------------------CTGGAGCA
GCC-GAAA-AACCAC-AAAGAAGTG-AAACAGCC--------------------------
------------------AGTTCCTGTCTTAACTAATTAACCCACCTTAT----------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CCACCATTATGACTTGTTCCTGCCCTGCCCCA
ACTGATCAATCAACC--------CT--GTGACATTC-TTC---TGG---------ACAAT
GAGTCCCA------------TCATCTCTCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------ATG----CACCTTGTG--------------
---------------------------AC-CCCCTCCTC-TGCTGACAATAG-ACAA-CT
ACC-TTTAACTGTAACTTTCCACGGCCTACCCA-AGCCCTATAA-----------AGCT-
GCTCCTCTC-C--TATCTCCCTTTGCTGACTCTCTTTTTGGACTCAGCCCACTTGCACCC
AAGTG-------A-ATCAACAGCCTTGTTGCTCACACAAAGCCTG--TTTA-GGTAGTCT
-TCTATACGGACACGCGTG-----A--C-
>LTR7C_chr19_Sltr_559__chr19_1583569115836170_+_
-GTCAGGCCTGTGAGCTGAAG---------------------------------------
-----------------------------CTTAGCCATTGTAACCCCTGTGACCTGCACA
TATCCGTCCAGGTGGCCTGCAGGAGCCAAGAAGT------------------CTGGAGCA
GCC-GAAA-AACCAC-AAAGAAGTG-AAACAGCC--------------------------
------------------AGTTCCTGCCTTAACTAATTAACCCACCTTAC----------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CCACCATTATGACTTGTTCCTGCCCTGCCCCA
ACTGATCAATCAACC--------CT--GTGACATTC-TTCTCCTGG---------ACAAT
GAGTCCCA------------TCATCTCTCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------ATG----CACCTTGTG--------------
---------------------------AC-CCCCTCCTC-TGCTGA----GG-ATAA-CC
ACC-TTTAACTGTAACTTTCCACG-CCTACCCA-AGCCCTATAA-----------AGCT-
GCCCCTCTC-C--TATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCACTTGCACCC
AAGTG-------A-ATTAACAGCCTTGTTGCTCACACAAAGCCTG--ATTG-GGT-GTCT
-TCTATACGGACACGCGTG-----A--CA
>LTR7C_chr8_Sltr_1397__chr8_52902325290697__
TGTCAGGCCTCTGAGCCGAAG---------------------------------------
-----------------------------CTCAGCCATTGTAACCCCTGTGACCTGCACA
TATAC----AGATGGCCTGCAGGAGCCAAGAAGT------------------CTGGAGCA
GCT-GAAA-AACCACGAAAGAAGTG-AAACAGCC--------------------------
------------------AGTTCCTGCCTTAATTGATTAACCAACTTTAT----------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CCACTACTATGACTTGTTCCTGCCCTACCCTA
ACTGATCAATCGGCC--------CT--GTGACATTC-TTCTCCTGG---------ACAAT
AAGTCTCG------------TGATCTCTCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------ATG----CACCTTGTG--------------
---------------------------AC-CCCCTCCCC-TGCTGACAACAA-AAAA-CC
ACC-TTTAACTGTAACTTTCCACTGCCTACCCA-AGCGGTATAA-----------AGCT-
GCCCCTCTC-C--TATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCACTTGCACCC
AAGTG-------A-GTAAACAGCCTTGTTGCTTACACAAAGCCTG--TCGA-GATGGTCT
-TCTATACTGACACGTGTG-----A--C-
>LTR7C_chr2_Sltr_655__chr2_125710590125711055_+_
-GTCAGGCCTCTGAGCCGAAG---------------------------------------
-----------------------------CTCAGCCATTGTAACCCCTGCGACCTGCACA
TATACATCCCGATGGCCTGCAGGAGCCAAGAAGT------------------CGGGAGCA
GCT-GAAA-AACCACAAAAGAAGTG-AAACAACC--------------------------
------------------GGTTTCTGCCTTAACTGATTAACCCACCTTAC----------
---A--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CCACCACTAGGACTTGTCCCTGCCCTACCCTA
ACTGATCAATCCATC--------CA--ATCA----A-TTCTCCTGG---------ACAAT
GAGTCTCA------------TGATCTCTCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------ATG----CACCTTGTG--------------
---------------------------AC-CCCCTCCCG-TGCTGACAACAG-ATAA-CC
ACC-TTTAACTCTAACTTTCCACTGCCTACCCC-AGTCCTATAA-----------AGCT-
GCCCCTCTC-T--TATCTCCCTTCACTGACTGTCTTTTTGGACTCAGCCCACTTGCATCC
GAGTG-------A-ATAAACAGCCTTGCTGCTTACACAAAGCCTG--TTTA-GGTGGTCT
-TCTATATGGACACGCATG-----A--CA
>LTR7C_chr9_Sltr_1448__chr9_1578658715787054_+_
-GTCAGGCCTCTGAGCTGAAG---------------------------------------
-----------------------------CTCAGCCATTGAAACATCTGTGACCTGCACA
TATATGTCCAGATGGCCTATAGGAGCCAAGAAGT------------------CTGGAGCA
GCT-GAAA-AACCACAAAAGAAGTG-AAACAGCC--------------------------
------------------AGTTCCTGCCTTAACTGAT-AACCCACCTTAC----------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CCACCATTATGACTTGTTCCTGCCCTATCCTA
ACTGATCAATCAACC--------TT--ATGACATTC-TTCTCCAGG---------ACAAT
GGGTCTCA------------TGATCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------ATG----CACCTTTTG--------------
---------------------------AC-CCC-TCCCC-TGCCGACAACAG-ATAA-CC
ACC-TTCAACTGTAGCTTTCCACTGCCTACCCG-AGTCCTACAA-----------AGCT-
GCCCCTCTC-C--TATCTCCCTTCACTGATTCTCTTTTTGGACTCAGACCACTTGCACCC
AAGTG-------A-ATAAACAGCCTTGTTGCTTACACAAAGCCTG--TTTA-GGTGGTCT
-TCTATATGGACACGCGTG-----A--CA
>LTR7C_chrY_Sltr_fr_1597__chrY_1617444616174932__
-GTCAGGCCTCTGAGCCAAAG---------------------------------------
-----------------------------CTCAGCCATTATAGCCTCTGTGACCTTCACA
TATACATCTAGATGGCCTGCAGGAGCCAAGAAGT------------------CTGGAGCA
GCT-GAAA-AACCACAAGAGAAGTG-AAACAGCC--------------------------
------------------AGCTCCTGCCCTAACTGATTGACCGACCTTAT----------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CCACCATTATGACTTGTTTCTGCCTTGCCCAA
ACTGATCAATTGATC--------CT--GTGACATTC-TTCTCCTGG---------ACAAT
GAGTCTCA------------TCATCTCTCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------AGG----AACCATGTG--------------
---------------------------AC-CCCCTCCCC-TACTGAAAACAG-ACAA-CC
ACC-TTTAACTCTAACTTTCCACTGCCTACCCA-AGCCCTATAA-----------AGCT-
TCTCCTCTC-C--TATCTCCCTTCTCTGACTTTCTTTTCAGACTCAGCCCACTTGCACCC
AACTG-------A-ATAAACAGCCTTGTTGCTCACACAAAGCCTG--TTCA-CGTGGTCT
-TCTATATGGACACGTG-G-----A--C-
>LTR7C_chrY_Sltr_fr_1598__chrY_1641041616410902_+_
--TCAGGCCTCTGAGCCAAAG---------------------------------------
-----------------------------CTCAGCCATTATAGCCTCTGTGACCTTCACA
TATACATCTAGATGGCCTGCAGGAGCCAAGAAGT------------------CTGGAGCA
GCT-GAAA-AACCACAAGAGAAGTG-AAACAGCC--------------------------
------------------AGCTCCTGCCCTAACTGATTGACCAACCTTAT----------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CCACCATTATGACTTGTTTCTGCCTTGCCCAA
ACTGATCAATTGATC--------CT--GTGACATTC-TTCTCCTGG---------ACAAT
GAGTCTCA------------TCATCTCTCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------AGG----AACCATGTG--------------
---------------------------AC-CCCCTCCCC-TACTGAAAACAG-ACAA-CC
ACC-TTTAACTCTAACTTTCCACTGCCTACCCA-AGCCCTATAA-----------AGCT-
TCTCCTCTC-C--TATCTCCCTTCTCTGACTTTCTTTTCAGACTCAGCCCACTTGCACCC
AACTG-------A-ATAAACAGCCTTGTTGCTCACACAAAGCCTG--TTCA-CGTGGTCT
-TCTATATGGACACGTG-G-----A--CA
>LTR7C_chr3_Sltr_941__chr3_7653357576534043__
TGTTAGGTCTCTGAGCTGAAG---------------------------------------
-----------------------------CTCAGCCATTATAACCCCTGTGACCTGCACA
CATATGTCCAGATGGCCTGCAGGAGCCAAGAAAT------------------CTGCAGCA
GCC-GAAA-AACCACAAAAGAAGTG-AAACC-TC--------------------------
------------------AGTTCCTGCCTTCACCGATTGACCCTCCATAT----------
---G--------------------------------------------------------
----------------------------------------------------------AC
CTT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CCACCACTATGACTCGTTCCTGCCCTACCCTA
ACTGATCAGTTGACC--------CT--GGGACATTC-TTCTCCTGG---------ACAGT
GAGTCTCA------------TGGTCTCTCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------ATG----CACCTTGTG--------------
---------------------------AC-CCCCTCCCC-TGCTGACAACAG-ATAA-CC
ACC-TTTGACTGTAACTTTCCACTGCCTACCCG-AGCCCTATAA-----------AGCT-
GCCCCTCCC-C--TATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACTTGCACCC
AAGTG-------A-ATAAGCAGCCTTGTTGCTCACACAAAGCCTG--TGCA-GGTGGTCT
-TCTATACGGACTCGTGTG-----A--C-
>LTR7C_chr1_Sltr_48__chr1_221958165221958635_+_
-GTCAACCCTTTGAGCCGGAG---------------------------------------
-----------------------------TTAAGCCACTGTAACCCCTGTGACCTACACA
TATACATCCAGATGGCCTGCAGGAGCCAAGAAGT------------------CTGGAGCA
GCC-AAAA-AACCACAAAAGAAGTG-AAACAGCC--------------------------
------------------AGTTTCTGCCTTTGCTGATTAACCAACCCTAC----------
---A--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CCACCATTATGACTTGTTCCTGCTCTACCCTA
ACTGATGAATTGACG--------TT--ATGACATTC-TTCTCCTGG---------ACAAT
GGGTTTCA------------TGATCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------ATG----CACCTTGTG--------------
---------------------------AC-CCCCTCCCC-TGCTGACTAGAG-ATAA-CC
ACC-TTCAACTGTAACTTTCCACTGCCTACCCA-AGTCCTATAA-----------AGCT-
GTCCCTCTG-G--TATCTCCCTTTGCTGACTCTCTTTTCAGACTCAGCCCATTTACACTC
AAGTG-------G-ATAAACAGCCTTGTTGCTCACACAAAGCGTG--TTTA-GGTGGTCT
-TCTATACAGACATGTGTG-----A--CA
>LTR7C_chr22_Sltr_814__chr22_3903888539039353__
TGTCAGGCCTCTGAGCCGGAG---------------------------------------
-----------------------------CTAAGCCATTGTGACCCCTGTGAACTGCACA
TATACATCCAGATGGCCTGCAGCAGCCAAGAAGT------------------CTGGAGCA
GCC-AAAA-AAACACAAAAGAAGTG-AAACAGCC--------------------------
------------------AGTTTCTCCCTTAACTGATTAACCAACCTTAA----------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CCACCATTAGGACTTGTTCCTGCCCTACCCTA
ACTGATCAATCGACC--------TT--ATGACATTC-TTCTTCTGG---------ACAAT
GGGTCTCA------------TGGTCT-CCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------ATG----CACCTGGTG--------------
---------------------------AC-CCCCTCCCC-TGCTGACAACAG-ATGA-CC
ACC-TTCGACTGTAACTTTCCACCACCTACCCA-AGTCCTATAA-----------AGCT-
GCCCCTCTC-T--TATCTCCCTTCGCTGACTCTCTTTTCAGACTCAGCCCACTTGCACCC
AAGTG-------A-ATAAATGGCGTTATTGCTTACACAAAGCCTG--TTTA-GGTGGTTT
-TCTATACAGACACGCATG-----A--C-
>LTR7C_chr22_Sltr_817__chr22_3907571339076181__
TGTCAGGCCGCTGAGCCAGAG---------------------------------------
-----------------------------CTAAGCCATTGTGACCCCTGTGAACTGCACA
TATACATCCAGATGGCCTGCAGCAGCCAAGAAGT------------------CTGGAACA
GCC-AAAA-AAACACAAAAGAAGTG-AAACAGCC--------------------------
------------------AGTTTCTCCCTTAACTGATTAACCAACCTTAA----------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CCACCATTAGGACTTGTTCCTGCCCTACCCTA
ACTGATCAATCGACC--------TT--ATGACATTC-TTCTTCTGG---------ACAAT
GGGTCTCA------------TGGTCT-CCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------ATG----CACCTTGTG--------------
---------------------------AC-CCCCTCCCC-TGCTGACAACAG-ATGA-CC
GCC-TTTGACTGTAACTTTCCACCGCCTACCCA-AGTCCTATAA-----------AGCT-
GCCCCTCTC-C--TATCTCCCTTCGCTGACTCTCTTTTCAGACTCAGCCCAGTTGCACCC
AAGTG-------A-ATAAATGGCATTATTGCTTACACAAAGCCTG--TTTA-GGTGGTCT
-TCTATATGGACATGTATG-----A--C-
>LTR7C_chr13_Sltr_343__chr13_110957367110957837__
TGTCAGGCCTCTGAGCTGGAG---------------------------------------
-----------------------------CTAAGCCATTGTAACCCCTGTGACCTGCACG
TATATATCCAGATGCCCAGCAGGAGCCAAGAAGC------------------CTGGAGCA
GCC-AAGA-AACCACAAAAGAAGTG-AAACAGTC--------------------------
------------------AGTTTCTGCCTTAACTGATTAACCAACCTTAC----------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CCAACATTATGACTTGTTCCTGCCCTACCCTA
ACTGATCAATCGACC--------CT--GTGACATTC-TTCTCCTGG---------ACAAT
GGATCTCA------------TGATCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------ATG----CACCTTGTG--------------
---------------------------AC-CCCCCCTCC-TGCTGACAACAG-ATAA-CT
ACC-TTCAACTCTAACTTTCCACTGCCTACCCA-AGTCCTATAA-----------AGCT-
GCCTCTCTC-C--TATCTTCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACTTGCACCC
AAGTG-------A-ATAAACAGCCTTGTTGCTTACACAAAGCCTG--TTTA-GGTGGTCT
-TCTATATGGATACGCGTG-----A--C-
>LTR7C_chr2_Sltr_665__chr2_1486322114863689__
TGTCAGGCCTCTGAGCCGGAA---------------------------------------
-----------------------------CTAAGCCATTGTAACCCCTGTGACCTGCATG
TATACATCCAGATGGCCTGCAGGAACCAAGAAGT------------------CTGGAGCA
GCC-GTGA-AACCACAAAAATAGTG-AAACAGTC--------------------------
------------------AGTTTCTGTCTTAACTGATTAACCAACCTTAC----------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CTACCATTATGACTTGTTCCTGCCCTACCCTA
ACTGATCAATTGATC--------TT--ATGACATTC-TTCTCCTGG---------ACAAT
GGATCTCG------------TGATCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------ATG----TACCTTGTG--------------
---------------------------AC-CCCCT-CCC-TGCTGACAACAG-ATAA-TC
ACT-TTCAACTGTAACTTTCCACTGCCTACCCA-AGTCCTATAA-----------AGCT-
GCCCCTCTC-C--TATCTCCCTTC-CTGACTCTCTTTTCAGACTCAGCCCACTTGCACCC
AAGTG-------A-ATAAACAGTCTTGTTGCTTATACAAAGCCTG--TTTA-GGTGGTCT
-TCTATATGGACATGCATG-----A--C-
>LTR7C_chr3_Sltr_fr_899__chr3_2118570421186171__
-GTCAGGCCTCTGAGCCAGAA---------------------------------------
-----------------------------CTACGCCATTGTAACCCCTGTGACCTGCACG
TATACATCCAGATGGCCTGCAGGAGCCAAGAAAT------------------TTGGAGCA
GCT-GAAG-AACCAAAAACGACGTG-AAACAGCC--------------------------
------------------AGTTTCTGCCGTAACTGATTAACCAACCTTAT----------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CCACCATTATGACTTGTTCCTGCCCTACCTTA
ACTGACCAATCGACC--------TT--ATGACATTC-TTCTCCTGG---------ACAAT
GGATCTCT------------TGATCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------ATG----CACCTGGTG--------------
---------------------------AC-CCCCT-CCC-TGCTGACAAAAG-ATAA-CC
ACC-TTCAACTGTAACTTTCCACTGCCTACCCA-AGTCCTATAA-----------AGCT-
GCCCCTCTC-C--TGTCTCTCTTCACTGATTCTCTTTTCGGACTCAGCCCACTTGCACCC
AAGTG-------A-ATAGACAGCCTTGTTGCTTATACAAAGCCTG--TTTA-GGTGGTCT
-TCTATATGGACACGTGTG-----G----
>LTR7C_chr3_Sltr_903__chr3_2630697126307435__
TATCAGGCCTCTGAACCAGAA---------------------------------------
-----------------------------CTAAGCCATTGTAACCCCTGTGACCTGCACA
TATACATCCAGATGGCCTGCAGGGGCCAAGGAGT------------------CTGGAGCA
GCT-GAAA-AACCACAAAAGAAGTG-AAACAGCC--------------------------
------------------AGTTTCTGCCTTAACTGATTAACCAATCTTAC----------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CCGCCATTATGACTTGTTCCTGCCCTACCCTA
ACTGATCAATCGACC--------TT--ATGACAT-------CCTGG---------ACAAT
GGATCTCA------------TGATCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------ATG----CACCTTGTG--------------
---------------------------AC-CCTCT-CCC-TGCTGACAACAG-ATAA-CC
ACC-TTCAACTGTAACTTTCCACTGCCTATCCA-AGTCCTATAA-----------AGCT-
GCCCCTCTC-C--TATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACTTGCACCC
AAGTG-------A-ATAGACAGCCTTGTTGCTTACACAAAACCTG--TTTA-GGTGGTCT
-TCTATATGGACACACGTG-----A--C-
>LTR7C_chr3_Sltr_918__chr3_4452260844523078_+_
-GTCAGGCCTCTGAGCCGGAG---------------------------------------
-----------------------------CTAAGCCATTGTAACCCCTGTGACCTGCACG
TATACATCCAGACGGCCTGCAGGAGCCAAGAAGT------------------CTGGAGCA
GCC-GAGA-AACCACAAAAGAAATG-AAACAGCC--------------------------
------------------AGTTTCAGCCTTAACTGATTAACCAAACTTAC----------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CCACCATTATGACTTGTTCCTGCCCTACCCTA
ACTGATCAATCGACC--------TT--ATGACATTT-TTCTCCAGG---------ACAAT
GGATCTCA------------TGATCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------ATG----CACGTTGTG--------------
---------------------------AC-CTCCTCCCC-TGCTGACAACAG-ATGA-CC
ACC-TTCAACTGTAACTTTCCACTGCCTACCCA-AGTCCTGTAA-----------AGTT-
GCCCCTCTC-C--TATCTCCCTTCGCTGACTCTCTTTTTGGACTCAGCCCACTTGCACCC
AAGTG-------A-ATAAACAGCCTTGTTGCTCACACTAAGCCTG--TTTA-GGTGGTCT
-TCTATATGGACATACGTG-----A--CA
>LTR7C_chr19_Sltr_571__chr19_2113478121135256__
TGTTAGGCATCTGAGCCGAAG---------------------------------------
-----------------------------CTCAGCCATTATAACCCCTGTGACCTGCATA
TATGTGTCCACATGGCCTGCAGGAGCCAAGAAGT------------------CTGTAGCA
GCC-AAAA-AACCACAAAGAAAGTG-AAACAGCC--------------------------
------------------AGTTCCTGCCTTAACTGATTAACCAACATTAC----------
---A--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CAACCATTGTGACTTTTCCTTGCCCCACCTTA
ACTGATCAATCGACC--------CT--GTGATTGTC-TTCTTCTGG---------ACAAT
GAGTCCCA------------TGATCTCTCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------ATG----CACCTTGTG--------------
---------------------------AC-CCCCTCCCC-TGCTAACAATAG-ATAA-CT
ACT-TTTAACTGTAACTTTCCACTGTCTACCCA-AGCCCTATAG-----------AGCT-
GCCCCTCTC-C--TATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACTTGCACCC
AAGTG-------A-ATAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACCTGGATGTGCTTG-----A--C-
>LTR7C_chr2_Sltr_648__chr2_110691825110692262_+_
-GTCAGGCCTCTGAGCCAAAG---------------------------------------
-----------------------------CTCAGCCATTGTAACCCCTGTGGCCTGCACA
TATATGTCCAGATGGCCTGCAGGAGCCAAGAAGT------------------CTGGAGCA
GCC-GAAA-AA-------------------------------------------------
----------------------CCTGCCTTAACTAATTAACCCACCTTAT----------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CTACCATTATGACTTGTTCCTGCCCTGCCCCA
ACTGATCAGTCGACC--------TT--ATGACATTG-TTCTTCTGG---------ACGAT
GAGTCTTA------------CGATCTCTCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------ATG----CACCTTGTG--------------
---------------------------AC-CCTCTCCCC-TGCGAACAATAG-ATAA-CC
ACC-TCTAACTGTAACTTTCCACTGCCTACCCC-AGTCCCGTAA-----------AGCT-
GCCCCTCTC-C--TATCTCCCTTCTCTGACTCTCTTTTCAGATTCAGCCCACTAGTACCC
A-----------------ACAGCCTTCTTGGTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACGCGCTTG-----A--CA
>LTR7C_chr6_Sltr_1237__chr6_168677168168677632__
TATTAGGCCTCTGAGCCGAAG---------------------------------------
-----------------------------CTCCGCCATTGTAACCCCTGTGACCTGCACA
TATACATCCAGATGGCCTGCAGGAGCCAAGAAGT------------------CTGGAGCA
GCT-GAAA-AAACACAAAGA-GGTG-AAACAGCC--------------------------
------------------AGTTCCTGCCTTAACTAATTAACCCACCTTAC----------
---A--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CCACCATTATGACTTGTTCCTGCCCTGCCCCA
ACTGGTCAATCGACC--------CT--GTGACATTC-TTCTCCTGG---------ACAAT
GAGTCCCA------------TCATCTCTCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------ATG----CACCTTGTG--------------
---------------------------AC-ACCCTCCCC-TGCTGAC----G-ATAA-CC
ACC-TTTAACTGTAACTTTCCACTGCCTACCCC-ACTCCTATAA-----------AGCT-
GCCCCTCTC-C--TATCTCCCTTCTCTGACCCTCTTTTTGGACTCAGCCCACTTGCACCC
AAGTG-------A-ATAAACAGCCCTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACATGGACACGCTTG-----A--C-
>LTR7C_chr6_Sltr_1233__chr6_161407610161408082_+_
-GTCAGGCCTCTGAGTCGAAG---------------------------------------
-----------------------------CTCAGCCATTATAACCCCTGTGACCTGCACA
TATACGTCCAGATGGCCTGCAGGAGCCAAGAAGT------------------CTGAAGCA
GCC-AAAG-AAAAACAAAGA-AGTG-AAACAGCC--------------------------
------------------AGCTCCTGCCATAACTGATTGACCAACCTTAT----------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CCACCATTATGACTTGTTCTGGCCCTGCCCCA
ACTGATCAGTTGACC--------TT--GTGACATTC-TTCTTTCGG---------ACAAT
GAGTCTTA------------TGATCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------ATG----CACCTTGTA--------------
---------------------------AT-CCCCTCCTC-TGCTAACAATAG-ATAA-CC
TCC-TTTAACTGTAACTTTCCACTGCCTACCCA-AGTCCTATAA-----------AGCT-
GCCCCTCTC-C--TATCTCCCTTCGCTGACTCTCTTTTTGGACTCAGCCCACTTGCACCC
AAGTG-------A-ATAAACAGCTTTATTGCTCACACAGAGCCTG--TTT--GGTGGTCT
CTTCACATGGACAGGCTTG-----A--CA
>LTR7C_chrX_Sltr_1524__chrX_1374156913742016__
TGTCAGGCCTCTGAGCCGAAG---------------------------------------
-----------------------------CTCAGCCATTGTAACCCCCGTAACCTGCATA
TATACGTCCAGATGGCCTGCAGGAGCC--------------------------------A
GCT-AAAA-AACCAC--AGA-AGTG-AAACAGC---------------------------
---------------------TCCTGCCTTAACTGACTGACCAACCTTAC----------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CCACCATTATGACTTGTTC-TGCCCTGCCCCA
ACTGATCAATCGACC--------TT--GTGACATTC-TTCTTCTGG---------ACAAT
GAGTCCCA------------AGATCTCTCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------C---------ATG----CACCTTGGG--------------
---------------------------AC-CCCCTCCCC-TGCTAACAATAA-ATAA-CC
ACC-TTTAACTGTAACTTTCCACTGCCTACTCA-AGCCCTATAA-----------AGCT-
GCCCCTCTC-C--TATCTCCCTTCACTGACTCTCTTTTCGGACTCAACCCACTTGCACCC
AAGTG-------A-ATAAACAGCCTTGTTCCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACAGACACGCATA-----A--C-
>LTR7C_chr17_Sltr_519__chr17_6476475364765196__
TGTCAGGCCTCTAAGCCGGAG---------------------------------------
-----------------------------CAAGGTCCTTGTAACCCCTGTGACCTGCCCG
TATACATCCAAATGGCCTGCAGGAGCCACAAAGT------------------CTGGAGCA
GCC-AAAA-AACCACAAAAAGAGTA-AAACAGCC--------------------------
------------------AGCTCCT-----------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------TGCATTGT-----CCCTGCCCCA
ACTCATCAATTGACC--------TT--GTGACAATC-TCCTCCTGG---------ACAGT
GAGTCTCA------------GGAGCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------T---------GAG----CACCTTGTG--------------
---------------------------A--CCCCTCCCC-TGCTATCAATAG-ATAA-CC
ACC-TTTAACTGTACCTTTCCACTGCCTACCCA-AGTCCTGTAA-----------AGCT-
GCCCCTATT-C--TATCCCCCTTCGCTGTCTCTCTTTTTGGACTCAGCCCATCCGCACCC
ATGTA-------A-ATAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT
CTTCACACGGACATGCTTA-----A--C-
>LTR7B_chr19_2ltr_int_fr_720__chr19_97418269742178_+_
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-----------------------------GATATTCCCCAACCTTG---------TGAAT
GTACTTTG------------TAAACTTCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------CCTTGAGA--ATG----TACTTTGTA--------------
---------------------------ACAACCATCCCT-TGCCTGCAAAAA-ATTG-CT
CC----TAAC--------TCCACAGCCTATCCC-AAACCTATAA-----------GA---
-----AGCC-C--CACCACCCTTCGCTGACTCCTTTCTCAGACTCAGCCCACTTGCAGCC
AAGTG-------A-ATAAACAGCCTTGTTACTCACACTAAGCCTG--CTT-AGGCAGTCT
CTT-ATATGGTCGCACATA-----A--CA
>LTR7B_chr1_Sltr_fr_24__chr1_160985674160986052__
------------------------------------------------------------
--------------------------------------GG--------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------T-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CCACCCTTGTGAT-------------------
-------AATGTACT--------TT--GTGATACTCCT-GTCCTTG---------TGAAT
GTACTTTG------------TAACCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------CC---AGA--ATG----TACTTTGTA--------------
---------------------------ATATCCATCCCC-TGCCTGTAAAAA-ATTG-CT
CC----TGAC--------TACACCGCCTATCCC-AAACCTATAA-----------GA---
-----ACCC-C--CACCACCTTTTGCTGACCCCTTTCTCGGACTCAGCCCACTCACACAC
AAGTG-------A-ATAAACAGCCATGTTGCTCACACTAAGCCTG--TTC-AGGTGGTCT
CTT-ATGTGGACACGCATA-----A--C-
>LTR7B_chr1_Sltr_fr_75__chr1_231099234231099615__
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------TGAT-------------------
-------AATGTACT--------TT--GTGAAATTCCTCGTCCTTG---------TGAAC
GTACTTTG------------TAACCTCCCA-GC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------CC---AGA--ATG----TACTTTGTA--------------
---------------------------ACATCCATCCCC-TGCCAGCAAAAA-ACTG-CT
CC----TGAC--------TCCACCGCCTATCCC-AAACCCATAA-----------GA---
-----ACCC-T--CACCACCCTTCGCTGACCCCTTTCTCAGACTCAGTGCACTTGCACCC
AAGTG-------A-ATAAACAGCCTTGTTGCTCACACTAAGCCTG--CTC-AGGTGGTCT
CTT-ATATGTACCTGCGTA-----A--C-
>LTR7B_chr1_Sltr_fr_46__chr1_203001946203002373__
TG------------------G---------------------------------------
-----------------------------TCAAGGCATTG--------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------T-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CTACCCTTGTGAT-------------------
-------AATGTACT--------TT--GTGATATTCCCTATCCTTG---------TGAAT
GTGCTTTG------------TAACCTCCCC-GC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------CC---AGA--ATG----TACTTTGTA--------------
---------------------------ACATCCATCCTT-TGCCCACA-AAA-ATTG-CT
CC----TAAC--------TCCACGGCCTATCCC-AAACTTATAA-----------GA---
-----ACCC-C--CACCACACTTCGCTGACTCCTTTCTCGGACTCAGCCCACTTGCACCC
AAGTG-------A-ATAAACAGCCTTGTTGCTCACACTAAGCCTG--CTC-AGGTGGTCT
CTT-ATACAGATGCGTGTA-----A--C-
>LTR7B_chr10_Sltr_fr_205__chr10_9134452691344877_+_
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CCACCCTTGTGAT-------------------
-------AATGTGCT--------TT--ATGATATTCCCCATCCTTG---------TGAAT
GTACTTCG------------TAACCTCCCC-GC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------CC---AGA--ATG----TACTTTGTA--------------
---------------------------ACATCCATCCCC-TGCCCACAAAAA-ATTG-CT
CC----TGAC--------TCTACCGCCTATCCC-AAACCTATAA-----------GA---
-----AACC-C--CTCCACCCTTCGCTGACTCCTTTCTCAGACTCAGCCCACTTGCGCCC
AAGTG-------A-ATAAACGGTCTTGTTGCTCACACTAAGCCTG--CTC-AGGTGGTCT
CTT-ATACGGACGCGAGTA-----A--CA
>LTR7B_chr14_Sltr_fr_480__chr14_8577795585778477__
------------------------------------------------------------
-------------------------------------TGG--------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------T-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CCGCCCTTGTGAT-------------------
-------AATGTACT--------TT--GTAACACTCCCCACCCTTG---------TGAAT
GTACTTTG------------TGACCTCCCC-GC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------CC---AGA--ATG----TACTTTGTA--------------
---------------------------ACATCCATCCCC-TGCCGGCAAAAA-ATTG-CT
CC----TAAC--------TCCACCGCCTATCCC-AAACCTGTAA-----------GA---
-----ACCC-C--CACCACCCTTCGCTGACTCCTTTCTCAGACTCAGCCCACTTGCACCC
AAGTG-------A-ATAAACAGTCTTGTTGCTCGCACTAAGCCTG--CTC-AGGTGGTCT
--T-ATACGGATGCGCATA-----A--C-
>LTR7B_chr3_Sltr_fr_987__chr3_119125272119125630__
------------------------------------------------------------
----------------------------------CCATCG--------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------T-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CCGCCCTTGTGAT-------------------
-------AATGTACT--------TT--GTGATATTCCCCATCCCTG---------TGAAT
GTACTTTG------------TAAG------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------ATA----TACTTTGTA--------------
---------------------------ACGTCCATCCCC-TGCCCTTAAAAA-ATTG-CT
CC----TGAC--------TCCACTGCCTATCTG-AAACCTGTAG-----------GA---
-----ACCC-C--CACCACCCTTTGCAGACCCCTTTCTCGGACTCAGCCCACTTGCACCC
AAGTG-------A-ATAAACAGCCTTGTTTCTCACACTAAGTCTG--CTC-AGTTCGTCT
CTT-ATACGAACGCGCATA-----A--C-
>LTR7B_chr3_Sltr_fr_1122__chr3_8453711584537530__
------------------------------------------------------------
----------------------------------CCATTG--------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------T-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
AAT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CCGCCCTTGTGAT-------------------
-------AATGTACT--------TT--GTGATATTCCCCATCCTTG---------TGAAT
GTACTTTG------------TAACCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------CC---AGA--ATG----TACTTTGTA--------------
---------------------------ACATCTATTCCC-TGCATGCAAAAC-ATTG-CT
CC----TGCC--------TCCACTGCCTATCCC-AAACCTGAAA-----------GA---
-----ACCC-T--CACCTCCCTTCGCTGACTCCTTTTTCAGACTCAGCCCGCTTGCACCC
AAGTG-------A-ATAAACAGCCTCGTTGCTCACACTAAGCCTT--TTC-AGGTGGTCC
CTT-ATATGAACACATGTA-----A--C-
>LTR7B_chr2_Sltr_fr_806__chr2_189382591189382995__
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-----------------------------CACCCTTGTGAT-------------------
-------AATATACT--------TT--GTGATATTC------CTTG---------TGAAT
GTACTTTG------------TAACCTCCCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------CCTTGAGA--ATG----TACTTTGTA--------------
---------------------------ACATCCATCCCC-TACCTGCAAAAA-ATTG-CT
CC----TGAC--------TCCACCACCTATCCC-AAACCTATAA-----------GA---
-----ACCC-C--CACCACCCTTTGCTGACTCTTTTCCCAGACTCAGCCCACTTGCACCC
AGGTG-------A-ATAAATAGCCTTGTTGCTCACACTAAGCCTG--CTC-AGGTGGTCT
CTT-ATATGGACGTGCGTA-----A--C-
>LTR7B_chr4_Sltr_fr_1240__chr4_6701470067015134_+_
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-----------------------------CGCCCTTGTGAT-------------------
-------AATACACT--------TT--GTGGTATTCCCCATGCTTG---------TGAAT
GTACTTTG------------TAACCCCGCC-AC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------CCTTGTGA--ATG----TACTTTGTA--------------
---------------------------ACATCCATCCAC-TGC-----------CTG-CT
CC----TAAT--------TCCACCGCCTATCCC-AAACCTGTAA-----------GA---
-----ACCC-C--CACCACTCTTTGCTGACTCCTTTCTCGGACTCAGCCCACTTGCATCC
AAGTG-------A-ATAGACAGCCTTGTTGCTCACACTAAGCCTG--CTC-AGGTGGTCT
CTC-ATACGGATGTGCTTA-----A--CA
>LTR7B_chr12_Sltr_fr_332__chr12_132956755132957399__
------------------------------------------------------------
----------------------------------CCATCG--------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------T-----------------------
---G--------------------------------------------------------
----------------------------------------------------------AC
ATT---------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CCACCCTTGTGAT-------------------
-------AATGTACT--------TT--GTAATATTCCCGGTCCTTG---------TGAAT
GTACTTTG------------TAACCTCCCC------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------------------TGCCCGCAAAAA-ATTG-CT
GC----TGA-----------------------------------------------A---
-----ACCC-C--CACCACCCTCCGCTGACTCCTTTCTCAGACTCAGCCCACTTGCACCC
AAGTG-------A-ATAAACAGGCGTGTTGCTCACACTTAGCCTG--CTC-AGGTGGTCT
CCT-ATACGGACGCACGTA-----A--C-
>LTR7B_chr19_Sltr_fr_678__chr19_29013832901994__
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
---------------------------------------------------------AAG
GTACTTTG------------TAATGTCGCC-GC---------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------CCTTGAGA--ATG----TACTTTGTA--------------
---------------------------ACACCCACCAAC-TGTCCTCAAAAA-ACTG-CT
CC----TAAC--------TCCGATGCCTGTCCC-AAACCTATAA-----------GA---
-----ACCC-C--CATCACCCTTTGCTGAGTCCTTTCTCAGACTCAGCCCACTTGCACCC
AAGTG-------A-GTAAACAGCCTTGTGGCTCACACTAAGCCTG--CTC-AGGTGACCT
CTT-ATACGGACACGCGTA-----A--C-
