>LTR7C_chr6_2ltr_int_fr_1262__chr6_6788906267889473__ ------------------------------------------------------------ --------------------------------AGCCATCGTGACCCCTGTGACCCAC--- ---------AGAAGGT------------------CTCCTGGAGCCAGAAAGTCTAGGACA ACA--GGAAAACCACAAAAGAAGAA-AAACGGCT-------------------------- ------------------AGTTCCTGTCTTAGCTGAT-------------TAGCCAACCT TGCA-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------CTGTCATTGTAACAGGCT-------TACCCTA ACTGATCAATCAACC--------TC--GTGACACT------------------------- GTGCTCTG------------TAAC------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ---------------------CTTGTGATAATG----TACCTTATG-------------- ---------------------------ACATTCTTCCCC-TGCCCGCAATAA-ACGG-CT CC----TAACTGTAACTTTCCGGTGCTTACCTC-TAACTGATAA-----------AACTA GCTCCAA-C-C--CACCACCCTCCACTGACTTCCT--TCGCACTCAGCCCACTCGCACCC GGGTG-------A-ATAAACAGCCTTGTTGCTCACACTTAGCCTG--TTC-AAGTTGTCT CTTCAATTAGATGCTCGTA-----A--C- >LTR7C_chr4_Sltr_fr_1066__chr4_7921006979210500__ ------------------------------------------------------------ --------------------------------AGCCATTATGATCCCTGTGATCCACACG TACACATCCAGAAGGT------------------CTCCTGGAGCCAGAAAGTCTGGGACA ACA--GGAAAACCACAAAGGAAGAA-AAACAGCT-------------------------- ------------------AGTTCCTGTCTTAGCTGAT-------------TAGCCAGCCT TGCA-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------CTACCCTTGTAACATGCTC------TACCCTA ACTGA----TCAACC--------TC--GTGACACT------------------------- GTGCCCTG------------TGACCCCTCC-CA--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------CCTTGTGATAATG----TACCTTGTG-------------- ---------------------------ACATTCTTCCCC--GCCCGCAATAA-ACGT-CC CC----TAACTGTAACTTTCCACTGCTTAGCCC-TAACCTGTAA-----------AACTA GCTCCAATC-C--CGCCACCCTCCACTGACTCCCTTTTCAGACTCAGCCCACTCGCACCC GAGTG-------A-ATCAACAGCCTTGTTGCTCACACTTAGCCTG--TTC-AGGTTGTCT CTTCAATTAGACACATGTA-----A--C- >LTR7C_chr8_Sltr_fr_1385__chr8_134922656134923091__ ------------------------------------------------------------ --------------------------------AGCCATTATAACCCCTGTGACACACACA TACACATCCAGAAGGT------------------CTCCTGGAGTCAGAAAGTCTGGGACA ACG--GGAAAACCACAAAAGAAGAA-AAACAGCC-------------------------- ------------------AGTTCCTGTCTTAGCTGAT-------------TAGCCAACCT TGCC-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------CTACCATTGTAACATGCTC------TACCCTA ACTGATCAATCAACC--------TC--GTGACACT------------------------- GTGCTCTG------------TGACCCCTCC-CA--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------CCTTGTGATAATG----TACCTTGGG-------------- ---------------------------ACATTCTTCCCC-TGCCCACAATAA-AGGG-CC CC----TAACTGTAACTTTCCACTGCTTACCCC-TAACCTGTAA-----------AACTA GCTCCAATC-C--CACCACCCTCCACTGACTCCCTTTTTGGACTCAGCCCACTCACACCC AAGTG-------A-ATAAACAGCCTTGTTGCTCACACTTAGCCTG--TTC-AGGTTGTCT CTTCAATTAGACGCACGTA-----A--C- >LTR7C_chr6_Sltr_fr_1245__chr6_2898093228981360_+_ ------------------------------------------------------------ ---------------------------------GGCATTGTGACCCCTGTGACCCACACG TACACATCCAGAAGGT------------------CTCCTGGAGCCAGAAAGTCTGGGACA ACA--GGAAAACCACAAAAGAAGAA-AAACAGC--------------------------- ---------------------TCCTGTCTTAGCTGAT-------------TAGCCAACCT TGCG-------------------------------------------------------- ----------------------------------------------------------AC CTT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------CTACCATTGTAACATGCTC------TACCCTA ACTGATCAATCAACT--------TC--GTGACACT------------------------- GTGCTCTG------------TGACCCCTCC-CA--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------CCTTGTGATAATG----TACCTTGTG-------------- ---------------------------ACATTCTTCCCT-TGCCCGCAATAA-ACGG-GC CC----TTATTGTATCTTTCCACTGCTTACTCC-TAACCTATAA-----------AACTA GCTGCAATC-C--CACCACCCTCCGGTGACTCCCTTTTCGGACTCAGCCCGCTCGGACCA GAGTG-------A-ATAAACAG-CTTGTTGCTCACACTTAGCCTG--TTC-AGGTTGTCT CTTCAGTTAGACGCGCG------------ >LTR7C_chr13_Sltr_fr_373__chr13_8266101582661469__ --------------GCTATGG--------------------------------------- -----------------------------CCAAGCCATTGAGACCCCTGTGACCTACACG TACACATCCAGAAGTT------------------CTCCTGGAGCCAGTTAGTCTGGGACA ACA--GGAAAACCCCAAAAGAAGAA-AAACCGCT-------------------------- ------------------AGTTCCTGTCTTAGCTGAT-------------TAGCCAACCT TGCG-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------CTACCATTGTAACCTGCTC------TACCCTA ACTGATGAATCAACC--------TT--GTGACACT------------------------- GTGCCCTG------------GGACCCCTCC-CA--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------CCTTGTGATAATG----TACCTTGTG-------------- ---------------------------GCATTCTTCCCC-TGCCTGCAATAA-ACAG-CC CC----TAACTGTAACTTTCCACTGCTTACCAC-TAACCTATAA-----------AACTA GCTCCAATC-C--CACCACCCTCCTCTGACTCCCTTTTCGGACTCAGCCCGCTCACACCT GAGTG-------A-ATAGACAGTCTTATTGCTCACACTTAGCCTG--TTC-AGGTGCTCT CTTCAATTACACACATGTC-----A--C- >LTR7C_chr19_Sltr_fr_605__chr19_5604527656045989__ ------------------------------------------------------------ --------------------------------AGCCATGGTGACCTCTGTGACCCACATG TACACATCCAGAAGGC------------------CTCTTGGAGCCAGAAAGTCTAGGATA ACA--GGAAAACCACAGAAGA---A-AAACAGCT-------------------------- ------------------AGCTCCTGTCTTAGCTGAT-------------TAGCCAACCT -GCA-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------CTATCATTGTAACATGCTC------TACCCTA ACTGATCAATCAACC--------TT--GTGGCATT------------------------- GTGCCCTG------------TGACCCCTCC-CA--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------CCTTGTGACAGTG----TACCATGTG-------------- ---------------------------ACATTCTTCCCC-TGCCCGCAATAA-ACGG-TC CC----AGACTGTTACTTTCCACTGCTTATCCC-TAACCGATAA-----------AACTA GCTCCAATC-C--CATCACCCTTCGCTGACTCTCTTTTCAGACTCAGCCCGCTCACACCC AAGTG-------A-ATACACAGCCTTGTTGCTCACACTTAGCCTG--TTC-AGGTTGTCT CTTCACTTAGATGCATGTA-----A--C- >LTR7C_chr3_Sltr_fr_862__chr3_162601133162601560_+_ ------------------------------------------------------------ ---------------------------------GCCATCATGACCTCTGTGATCCACACA TACACATCCAGAAGGC------------------TTCCTGGAGCCAGAAAGTCTAGGACA ACA--GAAAAACCTCAAAAGAAGCA-AAAGAGCT-------------------------- ------------------AGCTCCCGTCTTAGCTGAT-------------TAGCCAACCT TGCA-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------GTACCATTGTAACATGCTC------TACCCTA ACTGATCAATCAACC--------TT--GAGACATT------------------------- GTGCCCTG------------TGACCCCTCC-TG--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------CTTTGTGACAATG----TACCTTGTG-------------- ---------------------------ACATTCTTCCCC-TGCCTGCAATAA-ACAG-CC CC----TAACTGTAACTTTCCACTGCTTACCCC-TAACCTATAA-----------AACTA ACTCCAATC-C--CACCACCCT-CACTGACTCTCTTTTTGAACTCAGCCCGCTCACACCC GAGGG-------A-ATAAACAGCCTTGTTGCTCACACTTAGCCTG--TTC-AGATTATCT CTTCATTTAGACGCACG------------ >LTR7C_chrX_Sltr_fr_1502__chrX_114047519114047965__ TGTAAGGCCTCTGAACCATGG--------------------------------------- -----------------------------TCAAGCCATCGTGACCCCTGTGACCCACACG TACACATCCAGAAGGT------------------TTCCTGGAGCCAGAAAGTCTGAGACA ACA--GGAAAAGCACAAGAGAAGAA-AAACAGCT-------------------------- ------------------AGTTCCTGTCTTAGTCCAT-------------TAGCCAAGCT TGCA-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------CTATCATTGTAACATGCTC------TACCTTA ACTGATCAATCAACC--------TC--G-------------------------------- --------------------TGACCCCTCC-CA--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------CCTTGTGATAATG----TACCATGTG-------------- ---------------------------ACATCCTTCCCC-TGCCGGCAAAAA-ACGG-CC CC----C-ATTGTAACTTTCCACAGCTTACCCC-TAACCTAGAA-----------AACCA GCTCCAATC-C--CACCACCCTCCGCTGACTCCCTTTTCAGACTCAGCCCTCTCCCACCT GGGTG-------A-ATAAACAGCCTCGTTGCTCACACTTAGCCGG--TTC-AGGTTGTGT CTTCAATTAGACGCGC------------- >LTR7C_chr9_Sltr_fr_1455__chr9_2599464025995063_+_ --------------GCCATGG--------------------------------------- -----------------------------TCAAGCCGTCATGACCCCTGTGACCCACACG TACACATCCAGAAGGT------------------CTCCTGGAGCCAGAAAGTCTGGCACA ACA--GGAAAACCACAACAGAAGAA-AAACAGCT-------------------------- ------------------AGTTCCTGTCTTAGCTGAT-------------TAGCCAAACT TGCG-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------CTACCATCGTAACAGGCTC------TACCCTA ACTGATCAATCAACC--------TC--GTGACACT------------------------- CAGCTCTG------------TAA------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------ATGTGTGATAATG----TACCTTGTG-------------- ---------------------------ACATTCTTCCAC-TGCCTGCAAAAA-CTGG-CC CC----TAACTGTAACTTTCCACTGCCTAACCC-TAACCTATAA-----------AACCA -CTCCAATC-C--CACCACCTGCTGCTGACTCCCTTTTCAGACTCAGCCTGTTCACACCC AAGTG-------A-ATAAAC-GCCTTGTTGCTTACATTTGGCCTG--TTC-TGGTTGTCT CTTCA------------------------ >LTR7C_chr1_Sltr_fr_70__chr1_247079361247079802__ TGTAAGGCGTCTGAGCCATGG--------------------------------------- -----------------------------TCAAGCCATTGTGATCCCTGTGACCCACACG TGTACATCCAGAAGG--------------------TCCTGGAGCCAGAAAGTCTGGGACA ACA--GGAAAACCACAAAGGAAGAA-AAACGGCT-------------------------- ------------------AGTTTCTGTCTTAGCTGAT-------------TAGCCAACCT TGCA-------------------------------------------------------- ----------------------------------------------------------GC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------TTACCGTTGTGACGTGCAC------TACCCTA ACTGATCAATCAGCC--------TA--GTGACA--------------------------- -----CTG------------TGACCCCTCC-C---------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------TCTTGTGACAATG----TACTTTGTG-------------- ---------------------------ACATTCTTCCCC-CGCCGGTAATAA-ACGG-CC CC----TGACTGTAACTTTCCACTGCTTACCCC-TCACCTATAA-----------AACTA ACTCCAATC-C--CACGACCCTCCGCTGACCCTCTTTTCGGACTCAGCCCGCTCGCACCC GAGTG-------A-GTAAACAGCCTTGCTGCTCACACTTAACCTG--TTT-GGGTAGTCT CTTC------------------------- >LTR7C_chr4_Sltr_fr_1046__chr4_2084517320845604_+_ ------------------------------------------------------------ ---------------------------------GCCATCATGACCCCTGTGACCCACATG TACACATCCAGAAGT--------------------TCTGGGAGCCAGAAAGTCTGGGACA ACA--GGAAAACCACTAAAGAAGAA-AAATGGCT-------------------------- ------------------AGTACCTGTCTTAGCTGAT-------------TAGGTAACCC TGCG-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------CTACCATTCTAGCATGCTC------TACCCTA ACTGATCAATCAACC--------TA--GTGACACT------------------------- GTGCTCTA------------TGACCCCTCC-CA--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------CCTTGTGATAATG----CACCTTGCA-------------- ---------------------------ACCTTCTTCCCC-TGCCCACAATAA-ATGG-CC CC----TAACTGTAACTTTCCACTGCTTA-CCC-TAATCTATGA-----------AATTA GCTCCAATC-C--CACCACCCTCTGCTGACTCCCTTTTTGGACTCAGCCCGCTCACATCC AGGTG-------A-ATAGACAGTCTTGTTGCTCACACTTAGCCTG--TTC-AGGTTGTCT CTTCAATTAGATGCGC------------- >LTR7C_chr1_Sltr_fr_18__chr1_166471418166471848_+_ ------------------------------------------------------------ ---------------------------------GCCATTGTGACCCCTGTGACCCACACG TAT---------AGGC------------------TTCCTGGAGTCACAAAGCCTGGAGCA ACA--GGAGATCCACTAAAGAAGAA-AAACAGCT-------------------------- ------------------GGTTCCTGTCTTAACTGAT-------------TAACCAACCT TGCA-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------CCACCATTGTGATATGCTCCTGCCCTACCCTA AGTAATCGATCGACC--------TT--GTGATATC------------------------- GTGCCTTG------------TGACCTCCCC-CA--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------CCTCGTGACTATG----CACCTTGTG-------------- ---------------------------ACATTCTTCCCC-TGCCCA-AAAAA-ACTG-CC CC----TAACTGTAACTTTCCACTACCTACCCC-AAACCAATGA-----------AACCA GTTCCACTC-C--CACCACCCTTCGCTGACTCCTTTCTCGGACTCAGCCCACTTGCACCC AAG------------TAAACAGCCTTGTTGCTCACACTAAGCCTG--CTC-AGGTGGTCT CTTA---TACAGATGAGTA-----A--CA >LTR7C_chr7_Sltr_1340__chr7_3755138337551850__ TGTAAGGCCTCTGAACAATGG--------------------------------------- -----------------------------TTGAGCCATTGTGACTCCTGTGACCCACACA TAC---------AGGC------------------CTCCTGCAGTCACAAAGCCTGGAGCA ACA--AGAGAAGCACTAAAGGAGAA-AAACAGCT-------------------------- ------------------AGTTCCTGCCTTAACTGAT-------------TAACCAACCT TGCA-------------------------------------------------------- ----------------------------------------------------------AC AAT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------CCACCAATGTGATATATTCCTGCCCTACCCTA AATAATCAATTGACC--------CC--GTGATATC------------------------- GTGCATTG------------TGACCTCCTC-CA--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------CCTTGTGACTATG----CACCCTGTG-------------- ---------------------------ACATTCTTCCCC-TGCCCA-AAAAA-ACTG-CC CC----TAACTATAACTTTCCACTACTTACCCC-AAACCTATAA-----------AACCA GTTCCCCTC-C--CACCACCCTTCGCTGACTCCTTTCTCGGACTCAGCCCACTTCCACCC AAG------------TAAACAGCCTTGTTGCTCACATTTAGCCTG--TTC-AGGTTGTCT CTTA---ATTAGATGTGTA-----A--C- >LTR7C_chrX_Sltr_fr_1550__chrX_3549673235497164_+_ ------------------------------------------------------------ -----------------------------TTGAGCCACTGTGACCCCTGTGACCCACACA TAC---------AGGC------------------CTCCTGGAGTCACAAAGCCTGGAGCA ACA--GGAGAACCACTAAAG---AA-AAACAGCT-------------------------- ------------------AGTTCCTGCCTTAACCGAT-------------TAACCGACGT TGCA-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------CCACCATTGTGATACGTTCCTGCCCTACCCTA ACTAATCAATCAACC--------TT--GTGATATC------------------------- GTGCCTTG------------TGACCTCCCC-CA--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------CCTTGTGACTATG----CACCTTGTG-------------- ---------------------------ACATTCTTCTCC-TGCCCG-AAAAA-ACTG-CC CC----TAACTGTAACTTTCTACTACCTACCCC-AAACCTATAA-----------AACCA GTTCCACTC-C--CACCACACTCTGCTGACTCCTTTCTTGGACTCAGCCCACTTGCACCC AAG------------TAAGCAGCTTTGTTGCTCACACTAAGCCTG--CTC-AGGTGGTCT CTTA---CACGGATGTGTA-----A--CA >LTR7C_chr16_Sltr_fr_462__chr16_1033964510340071__ ------------------------------------------------------------ --------------------------------AGCCATTGTGACCCCTGTGACCCACACA TAC---------AGGC------------------CTCCTGGAGTCACAAAGCCTGGAGCA ACA--AGAGAACCACTAAAGAAGAA-AAACAGCT-------------------------- ------------------AGTTCCTGCCTTAACTGAT-------------TAACCAAATT TGCA-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------CCACCATTGTCATATGTTCCTGCCCTACCCTA ACTAATCAATCGACC--------TT--GTGATACG------------------------- GTGCCTTG------------TGACCTCCCC-CA--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------CCTCATGACTATG----CATCTTATG-------------- ---------------------------ACATTCTTCCCC-TGCCCA-AAAAA-ACTG-CC CC----TAAATGTAACTTTCCTCTTCCTACCCC-AAACCTATAA-----------AACCA GTTCCACTC-C--CACCACCCTTCATTGACTCCTTTCTCAGACTCAGCCGACTTGCACCC AAG------------TAAACAGCCTTGTTGCTCACACTAATCCTA--CTC-AGGTGTTCC CTTA---TAAAGATGTGTA-----A--C- >LTR7C_chr9_Sltr_fr_1431__chr9_105435287105435702__ ------------------------------------------------------------ --------------------------------AGCCATTGTGACCCCTCTGACCCACACA TAC---------AGGC------------------CTCCTGGAGTCACAAAGCCTGGAGCA ACA--GGAGAACCACTAAAGAAAAA-AAACAGCT-------------------------- ------------------AGTTCCTGCCTTAACTGAT-------------TAACCAACTT TGCA-------------------------------------------------------- ----------------------------------------------------------GC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------CCACCATTGTGATATGTTCCTGCCCTGCCCTA ACTAATCAGTCGACC--------TT--GTGATATC------------------------- GTGCCTTG------------TGACCTCCCC-CA--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------CCTCATGACTATG----CACCTTGTG-------------- ---------------------------ACATTCTTCCCC-TGTCC--AAAAA-ACAG-CC CC----TAACTGTAACTTTCCATTACCTACCCC-AAACCTATAA-----------AACCA GTTCCACTC-C--CAACACTCTTTGCTGACTCCTTTCTCGGACTCAGCCCACTTGCACCC AGG------------TTAACAGCCTTGCTGCTCACACTTAGCCTG--TTT-GGGTAGTCT CTT------------------------C- >LTR7C_chr19_Sltr_fr_576__chr19_2303989123040320_+_ ------------------------------------------------------------ ---------------------------------GCCATTGCAACCTCTGTGACCCACATG TAC---------AGGC------------------CTCCTGGAGTCACAAAGCCTGTAGCA ACA--GGAGAACCACTAAAGAAGAA-AAACAGCT-------------------------- ------------------AGTTCCTGCCTTAACTGAT-------------TAACCAACCT TGCA-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------CCACCATTGTGATATGTTGCTGCCCTTCCCTA ACTAATCAATCGACT--------TT--GTGATATC------------------------- GTGCCTTG------------TAACCTCCCC-CA--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------CCTCGTGACTATG----CACCTTGTG-------------- ---------------------------ACATTCTTCCCC-TGCCTG-AAAAA-ACTG-CC C-----TAACTGTAACTTTCCACTACCTACCCC-AAACCTATAA-----------AACCA CTTCCACTG-A--CACCACCCTTTGCTGACTCCCTTTTTGGACTCAGCTCATTCGCACCT GAGTG-------A-ATAAACAGCCTTGTTGCTCACAGTAAGCCTG--CTA-AGGTGGTCT CTTA---TACAGATGCATA-----A--CA >LTR7C_chr3_Sltr_fr_865__chr3_162732048162732457_+_ ------------------------------------------------------------ ---------------------------------GCCATTATGACCCCTGTGACCCACACG TAC---------AGGC------------------CTCCTGGAGTCACAAAGCCTGGAGCA ACA--GGAGAACCACTAACGATGAA-AAACAGCT-------------------------- ------------------AGTTCCTGCCTTAACTGAT--------------AACAGACCT TGCA-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------CCACCATTGTGG-------------------- ---AATCAGTCGACC--------TT--GTGATATC------------------------- GTGCCTTG------------TGACCTCCCC-CA--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------CCTTGTGACTATG----CACCTTGTG-------------- ---------------------------ACATTCTTCCCC-TGCCTG-AAAAA-TCTG-CC CC----TAAATGTAACTTTCCACTACCTACCCC-AAACCTATAA-----------AACCA GTTCCACTC-C--CACCACCCTTCCCTGACTCTCTTTTCAGACTCAGCCCGCTTGCACCC GAGTG-------A-GTAAATAGCCATGTTGCTCACAGTTAGGCTG--ATT-GGGTACTCT CTTC---TAGGCACACATA-----A--CA >LTR7C_chr4_Sltr_fr_978__chr4_120520859120521293_+_ ------------------------------------------------------------ -----------------------------TTGAGCCATTGTGACCCCTGTGACACACACA TGC---------AGGC------------------CTCCTGGAGTCGCAAAGCCTGCAGCA ACA--GGAGAACCACTAAAGAAG---AAACATCT-------------------------- ------------------AGTTCCTGCCTTAACTGAT-------------TAACCAATCT TGCA-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------CCACCACTGTGATATGTTTCTGCCCTACCCTA ACTAATCAATCAACC--------TT--GTGATATC------------------------- CTGTCTTG------------TGGCATCCCC-CA--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------CCTCATGACTATG----CACCTTGTG-------------- ---------------------------ACATTCTTCCCC-TGCCCG-AAAAA-ACTG-CC CC----TAACTGTAACTTCCCATTACCTACCCC-AAACCTATAA-----------AACCA GTTCCACTT-C--CACCACCCTTCACTGACTCCTTTCTGGAACTCAGCCTGCTCGCACCT GAGTG-------A-ATAAACAGCCTTGCTGCTCCCACCTAGCCTG--TTT-GAGTAGTCT TTTC---TAGGTGTGTGTA-----A--CA >LTR7C_chr8_Sltr_fr_1368__chr8_112201866112202295_+_ ------------------------------------------------------------ ---------------------------------GTCATTGTGACCCCTGTGACCCACACA TAC---------AGGT------------------CTCCTGGAGTCACAAAGCCTGGAGCA ACA--GGAGAACCACTACAGAAG---AAACAGCT-------------------------- ------------------AGTTCCTGCCATAACGGAT-------------TAACCGACCT TGAA-------------------------------------------------------- ----------------------------------------------------------AC GTT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------CCACCATTGTGATATGTTCCTGCCCTACCCTA ACTAATCAATCTACC--------TT--GTGATATC------------------------- GTGCCTTG------------TGGCCTCCCC-CA--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------CCTGGTGACTATG----CACCTTGTG-------------- ---------------------------ACTTTCTTCCCC-TGCCCG-AAAAG--CTG-CC CC----TAACTGTAACTTTCCACTACCTACCCC-AAACCTATAA-----------AACCA GTTCCACTC-C--CACCACCCTTTACTGACTGCCTTTCCGGACTCAGCCCACTTGCACCT GAGTG-------A-ATAAACAGCCTTATTGCTCACACTTAGCCTG--TTT-GGGTAGTCT CTTC---TAGGCATGCGTA-----A--CA >LTR7C_chr9_Sltr_fr_1463__chr9_39008613901293_+_ ------------------------------------------------------------ ---------------------------------GCCATTGTGACCCCTGCGACACACAGG TCC---------AGGC------------------CTCCTGGAGTCACAAAGCTTTGAGCA ACA--GGAGAACCACTAAAGAAGAA-AAACAGCT-------------------------- ------------------AGCTCCTGCCTTAACTGAT-------------TAACCGAACT TGCA-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------CCACCATTGTGATATGTTCCTGCCCTACCCTA AATAATCAATCGGCC--------TT--GTGATATC------------------------- CTGCCATG------------TGAACTCCCT-CA--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------CCTCGTGACTACG----CACCTTGTG-------------- ---------------------------ACATTCTTCCCC-TGCCCG-AAAAG-ACTG-CC CC-----AACTGTAACCTTCCACTACCTATCCC-AAACCTATAA-----------AACCA GTTCCACTC-C--CACCGCCCTTCGCTGACTCCCTTTTCAGACTCAGCCCGCTCGCACCG GAGTG-------A-ATAAACAGCCTTGTTGCTCACACTTAGCCTG--TCT-GGGTAGTCT CTTC---TAGGCACGCGTA-----A--CA >LTR7C_chr13_Sltr_fr_346__chr13_2690342026903850__ ------------------------------------------------------------ --------------------------------AGCCATTGTGACCCCTGTGACTCACATG TAC---------AGGC------------------CTCCTGGAGTCACAAAGCCTGGAGCA GCA--G--GAACCACTCAAGAAGAA-AAACAGCT-------------------------- ------------------AGTTCCTGCCTTAACTGAT-------------TAACCGACTT TGCA-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------CCACCATTCTGGTGTGTTCCTGCCCTGCCCCA ACTAATCAATTGACC--------TC--GTGATATG------------------------- GTGCATTG------------TGACCTCCCC-CA--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------CCTCGTGACTATG----CACCTTGTG-------------- ---------------------------ACATTCTTCCCC-TGCCCG-AAAAA-ACTG-TC CC----TAACTGTAACTTTCCACTATCTACCCC-AAACCCATAA-----------AACCA GTTCCACTC-C--CACCACCCTTCGCTGACTCTCTTTTTGGACTCAGCCCGCTCACACCC GAGTG-------A-ATAAACAGCCATGTTGCTCACACTTAGCCTG--TTC-AGGTTGTCT CTTCACTTAGATGTATGTA-----A--C- >LTR7C_chr5_Sltr_fr_1114__chr5_126702901126703329__ ------------------------------------------------------------ --------------------------------AGCCATTGTGACCTCTGTGACCCACACA TAC---------AGGC------------------CTCCTGGAGTCACAAAGCCTGGAGCA ACA--GGAGAACCACTAAAGAAGAA-AAACAGCT-------------------------- ------------------AGTTACTGCCTTAACTGAT-------------TAACCGACCT TGCA-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------C--CCATTGTGATATGTTCCCGCCCTACCCTA GCTAATCGATCGACC--------TT--GTGATATC------------------------- ATGCCTTG------------TGACCTCCCC-CA--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------CCTCGTGACTATG----CACCTTTTG-------------- ---------------------------ACATTCTTCCCC-TGCCCC-AAAAA-ACTG-CC CC----TAACTGTAACTTTCCACTACCTACCAC-AAACCTATAA-----------AACCA GTTCCACTC-C--CACCACCCTTCGCTGACTCTCTTTTTGGACACAGCCTGCTCACACCC AAGTG-------A-ATAAACAGCCTTGTTGCTCACACTTAGTCTG--TTC-AGGGTGTCT CTTCACTTAGATGCGT------------- >LTR7C_chr2_Sltr_fr_723__chr2_227759484227759925_+_ --------------ACCACAG--------------------------------------- -----------------------------TAGAGCCATTGTGACCCCTGTGACCCACACG TAC---------AGGC------------------TTCCTGGAGTCACAAAGCCTGGATCA ATA--GCAGAACCACTAAAGAAGGA-AAACAGCT-------------------------- ------------------ACTTCCTGCCTTAACTGA--------------TAACCAACCT TGCA-------------------------------------------------------- ----------------------------------------------------------AA ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------CCACCATTGTGTTATGTTCCCGCCCTACCCTA ACTAATCAATCAACC--------TT--GTGATATT------------------------- GTGCCTTG------------TGACGTCCCC-CA--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------CCTCATGACTATG----CACCTTGTG-------------- ---------------------------ACATTCTTCCCC-TTCCCG-AAAAA-A----CT CC----TAACTGTAACTTTCCACTACTTAACCC-TTACCTGTAA-----------AACTA ACTCCAATC-C--CACCACCCTCCGCTGCTTCTCTTTCTGGACTCAGCCTGCTCGCACCC GAGTG-------A-ATAGACAGCCTTGTTGCTCACACTTAGCCTG--TTC-AGGGTGTCT CTTCAATTAGACGCACG------------ >LTR7C_chr8_Sltr_fr_1391__chr8_1592593215926346_+_ ------------------------------------------------------------ ---------------------------------GCCATTGTGACCCCTGTGGCCCATACG TAC---------AGGC------------------CTCCTGGAGTCACAAAGCCTGGAGCA ACA--GGAAAACCACTAAAGAAGGA-AAACAGCT-------------------------- ------------------AGTTCCTGCCTTAACTGAT-------------TAGCCGACCT TCCA-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------CCACCATTGTGATATGTTCCTGCCCTACCCAA AGTAATCCATTGACC--------TT--GTGATACT------------------------- GTGCCTTG------------TGACCTCCCC-CA--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------CCTTGTGACTATG----CACCTTGTG-------------- ---------------------------ACATTATTCCCC-TGCTGG-AAAAA-ACGG-CC CC----TAACTGTAACTTTCCATTGTTTACCCC-TTACCTATGA-----------AACTA ACTCCAATC-C--CACCACCCTCCGCTGACTCTCTTTTCGGACTCAGCCCGCTCGTACCT GAGTG-------A-ATAAACAGCCTTGTTGCTCACACTTAGCCTG--TTC-AGGGTGTCT CTTCA------------------------ >LTR7C_chr2_Sltr_fr_776__chr2_9576661395767033__ ------------------------------------------------------------ --------------------------------AGCCATTATGACCCCTGTGACCCACACG TAC---------AGGC------------------CTCCTGGAGTCACAAAGCCTGGAGCA CTA--GGAGAACCACTAAAGAAGAA-AAACAGCT-------------------------- ------------------AGTTCCTGCCTTAACTGAT-------------GAACTGACCT TGCA-------------------------------------------------------- ----------------------------------------------------------GC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------GCACCATTGTGATATGTTCCTGCC-----CCA ACTAATCCATCCACC--------TT--GTGATATT------------------------- GTGCCTTG------------TGACCTCCCC-CA--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------CCTCGTGACTATG----CACCTTGTG-------------- ---------------------------AAATTCTTCCCC-TGCCCG-AAAAA-ACTG-CC CC----TAACTGTAACTTTCCACTACCTACTCC-AAGCCTATAA-----------AACTA ACTCCACTC-C--CACAACCCTCCACTGACTTTCTTTTCGGACTCAGCCCACTTGCATCT CAGTG-------G-ATAAACAGCC-TGTTGCTCACACTTAGCCTG--TTC-AGGGCGTCT CTTCAATCAGACACGC------------- >LTR7C_chr2_Sltr_fr_777__chr2_9605754896057944_+_ ------------------------------------------------------------ ---------------------------------GCCATTATGACCCCTGTGACCCACACG TAC---------AGGC------------------CTCCTGGAGTCACAAAGCCTGGAGCA CTA--GGAGAACCACTAAAGAAGAA-AAACAGCT-------------------------- ------------------AGTTCCTGCCTTAACTGAT-------------GAACTGACCT TGCA-------------------------------------------------------- ----------------------------------------------------------GC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------GCACCATTGTGATATGTTCCTGCC-----CCA ACTAATCCATCCACC--------TT--GTGATGTT------------------------- GTGCCTTG------------TGACCTCCCC-CA--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------CCTCGTGACTATG----CACCTTGTG-------------- ---------------------------AAATTCTTCCCC-TGCCCG-AAAAA-ACTG-CC CC----TAACTGTAGCTTTCCACTACCTACTCC-AAGCCTATAA-----------AACTA ACTCCACTC-C--CACAACCCTCCACTGACTTTCTTTTCGGACTCAGCCCACTTGCATCT GAGTG-------G-ATAAACAGCC-TGTTGCTCACACTTAGCCTG--TTC-AGG------ ----------------------------- >LTR7C_chr2_Sltr_fr_778__chr2_9761363797614033_+_ ------------------------------------------------------------ ---------------------------------GCCATTGTGACCCCTGTGACCCACACG TAC---------AGGC------------------CTCCTGGAGTCACAAAGCCTGGAGCA CTA--GGAGAACCACTAAAGAAGAA-AAACAGCT-------------------------- ------------------AGTTCCTGCCTTAACTGAT-------------GAACTGACCT TGCA-------------------------------------------------------- ----------------------------------------------------------GC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------GCACCATTGTGATATGTTCCTGCC-----CCA ACTAATCCATCCACC--------TT--GTGATGTT------------------------- GTGCCTTG------------TGACCTCCCC-CA--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------CCTCGTGACTATG----CACCTTGTG-------------- ---------------------------ACATTCTTCCCC-TGCCCG-AAAAA-ACTG-CC CC----TAACTGTAACTTTCCACTACCTACTCC-AAGCCTATAA-----------AACTA ACTCCACTC-C--CACAACCCTCCACTGACTTTCTTTTCGGACTCAGCCCACTTGCATCT GAGTG-------G-ATAAACAGCC-TGTTGCTCACACTTAGCCTG--TTC-AGG------ ----------------------------- >LTR7C_chr19_Sltr_fr_555__chr19_1003353910033958__ --------------GCCAAGG--------------------------------------- -----------------------------TCAAGCCATTGTGACCCCTGTGAGCCACATG TAC---------AG-C------------------CTCCTGGGGTCACAAAGGCTGGAGCA ACA--GGAGAACCACCAA------A-AAACAGCT-------------------------- ------------------AGTTCCTGCCTTAACTTAT-------------TAACCGACCT TGGA-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------CCACCACTGTGATATGTTCCTGCCCTACCCTA ACTAATCAATTGACG--------TT--GTGA----------------------------- -----------------------CCTCCCC-CA--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------CCTTGTGGCTATA----AACCTTGTG-------------- ---------------------------ACATTCTTCCCC-TGCCCG-AAAAA-ACTG-CC CC----TAACTGTAACTTTCCACTACCTACCCC-AAACCTATAA-----------AACCA GTTCCACTC-C--AATCACCCTTCACTGACTCTTTTTTCGGACTCAGCCCGCTTGCATCC GAGTG-------A-ATAAACAGTCTTGTTGCTCACACTTAGCCTG--TTC-AGGGTGCCT CTTCAATTAGACGCGC------------- >LTR7C_chr17_Sltr_fr_504__chr17_52398735240530_+_ ------------------------------------------------------------ ---------------------------------GCCATTGTGACCCCTGTGACCCACACG TAC---------AGGC------------------CTCCTGGAGTCACAAAGCCTGGAGCA ACA--GGAGAACCACTAAAGAAGAC-GAACAGCT-------------------------- ------------------AGTTCCTGCCTTAA-TGAT-------------TAACCGACCT TGCA-------------------------------------------------------- ----------------------------------------------------------AC AGT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------CCACC-TTGTGATATGTTCCTGCCCT------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------- >LTR7C_chr17_Sltr_fr_509__chr17_52405005241180_+_ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------CCACC-TTGTGATATGTTCCTTCCCT------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------- >LTR7C_chr17_Sltr_fr_514__chr17_52409145241581_+_ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------CCACC-TTGTGATATGTTCCTGCCCTTCCCCA ACTAATCCATCCACC--------TT--GTGATATC------------------------- GTGCCTTA------------TGACTTCCCC-CA--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------CCTTGTGACTATG----CACCTTGTA-------------- ---------------------------ACATTCTTCCCC-TGCCCA-AAAAA-ACTG-CC CC----TAACTGTAACTTTCCACTACCTACCCC-AAACCTATAG-----------AACCA GTTCCACTC-C--CACCACCCTTCGCTGACTCCTTTCTCTGACTCAGCCCACTTGCACCC AAGTG-------A-ATAAACAGCCTTGTTGCTC-CACTAAGCCTG--CTC-AGGTGGTCT CTTA---TACGGAGGCGTA-----A--CA >LTR7d1_chr5_116619010_116619408_h3k27ac_EncodeTxn_SOLO_C_7down___chr5_116619010116619408___1398 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGTACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCCACCTTAACTGAT----------------------- ---GACATTGCACCACAAAAGACATGAAAATAGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTCTAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACACC-TGCCCGCCAGAGAACAACCC CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG- GTCCCACCC-C-T-ATCTCCCTT-------------TTCAGACTCAGCCAGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGATGTGCGTG---------- >LTR7d2_chr10_25716421_25722926_2736_ZNF534_ZNF90_KAP1_EncodeTxn_NANOG_7down____chr10_2571642125716832____1411 -ATCAGACCTCTGAGCCTAAG-----------------------CTAAGCCATCATATCC TTTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAATGAAAATGGCCCGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCAACCC-TGCCCGCCAGAGAACAACCC CCT-TTTGACTGTAATTTTCCTTTACGTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCACTGACTGTCTTTTCAGACTCAGCCTGCCTGCACCC AGGTGA-----AA--TAAACAGCATTTTTGCTCACACATAGCCTG--TTT--GGTGGTCT CTTCACATGGATGCGCATGA--------- >LTR7d2_chr7_20546709_20551693_2427_1_EncodeTxn_7down____chr7_2054670920547109____1399 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACA TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAGATGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GAGAAATTCCTTCT------------------- ---------CCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTGGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCACTAGAGAACAACCC CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG- GCCCCACGC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC AAGTGA-----A----AAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGACGCGAGTGA--------- >LTR7d2_chr2_194130702_194136554_3182_KAP1_EncodeRepressed_GRO4of7_C_7down___chr2_194136145194136554___1409 TATCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACA TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCGCAAAAGAAATGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GCGAAATTCCTTCTCCTGC-------------- ----CTCACCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCACCAAAGAAAAATCC CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTTGCTGAC--TCTTTTCAGACTCAGCCCCCCTGCACCC AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAATCCTG--TTT--GGTGGTCT CTTCACACAGACGCGCAT-A--------- >LTR7d2_chrX_126863047_126868992_4503_ZNF534_KAP1_EncodeTxn_7down____chrX_126863047126863509____1411 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATGCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAATGAAAATGGTCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCTTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCACTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CATCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCACCAGAAAACAACCA CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG- GCCCCACGC-C-T-ATCTCCCTTCGCTGACTTTCTTTTCAGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCTTACTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGATGCGCATGA--------- >LTR7d2_chr8_85062831_85069153_3229_ZNF534_KAP1_weakenh_7down____chr8_8506283185063238____1407 -GTCAGGCCTCTGAGCTCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TGCACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCGTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAATGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CAACTTGTG-------------- ---------------------------AC-CCCCACTCC-TTCCCACCAGAG---AACCC CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCACTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTTGCACA-ACGCACATGA--------- >LTR7d2_chr9_100140182100146522_3410_ZNF534_k4me3_TSS_NANOG_wanghigh_GRO2of7__chr9_100146116100146522___1406 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCT CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCT-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAATGAAAATGGCCTGTTCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-T----GCCAGAGAACAACCC CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTACAA-----------AACG- GCCCCACCC-C---ATCTTCCTTCACTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGCTGCTCACACAAAGCCTG--CTT--GTTGGTCT CTTTACACAGATGCGCATG---------- >LTR7d2_chr5_167297631_167303678_3096_ZNF534_TSSflanking_GRO3of7_C_7down___chr5_167303271167303678___1407 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCAGG TACACATCCAGA------------------------------------------------ -----------------------------TGGCT-------------------------- ------------------GGTTCCTGCCTTAAATGAT----------------------- ---GACATTCCACCACAAAAGAAATGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-AGCCCGCCAGAGAACAGCCC CCC-TTTGACTGTAATTTTCCTTTACCTAACCA-AATCTTATAA-----------AACG- GCCTCACCC-C-T-CCCT----TTGCTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC AGGCGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGACGCCCATG---------- >LTR7d1_chr12_13259639_13265519_4739_ZNF534_KAP1_EncodeRepressed_NANOG_GRO3of7_C_7down___chr12_1326512013265519___1399 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCATG TACACACCCAGA------------------------------------------------ -----------------------------TGGCT-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAACGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCAAT-C-TGCCCACCAGAGAACAACCC CCC-TTT----------TTCCTTTACCTACCCA-AATTCTATAA-----------AATG- GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTTGGACTCAGCCCACCTGCACCC AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTTACACAGACGCGCATG---------- >LTR7d1_chr19_54321247_54321646_EncodeRepressed_SOLO_C_7down___chr19_5432124754321646___1399 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACA TACACATCCAGA------------------------------------------------ -----------------------------TGGCT-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCTTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCTCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------G---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACA-C-TGCCCACCAGAGAACAACCC CTC-TTT----------TTCCTTTACCTACCCA-AATCCTATAA-----------AATG- GCCCCACCC-C-T-ATCTCCCTTCGATGACTCTCTTTTTGGACTCAGCCCACCTGCACCC AGGTGA---------TTAAAAGCTTTACTGCTCACACAAAGCCTG--TTT--AGTGGTCT CTTCACACGGAAGCGCATG---------- >LTR7d2_chr4_132118178132123891_4549_ZNF534_EncodeTxn_GRO2of7__chr4_132118178132118590____1407 -GTCAGGCCTCTGAGGCCAAG-----------------------CTAAGCC---ATATCC CCTGTGAC---------------------------------------------CTGCATG TACACATCCAGA------------------------------------------------ -----------------------------TGGCT-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCTACCACAGAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCTCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACT-C-TGCCCACCAGAGAACACCCC ACC-TTTGACTGCAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AATG- GCCCCATCC-C-T-ATCTCCCTTCACTGACTCTCTTTTTTGACTCAGCCCACCTGCACCC AGGTGA---------TAAACAGTTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGCGCATGA--------- >LTR7d1_chr19_55006829_55012423_3186_ZNF534_k4me3_weakenh_NANOG_GRO1of7_C_7down___chr19_5501201655012423___1397 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCATA------------------------------------------------ -----------------------------TGGCT-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTAC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------A---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACT-C-TGCCCGCCAGAGAACAACCC CGC-TTT----------TTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C---ATCCCCCTTCGCTGACTCTCTTGTCGGACTCAGCCCACCTGCACCC AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGCACATG---------- >LTR7d1_chr6_164338769_164344779_3315_ZNF534_KAP1_k27ac_enh_NANOG_44108_SMAD11_GRO4of7_C_7down___chr6_164344371164344779___1397 TGTCAGGCCTCTGAGCCCAAA-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACT TACACATCCAGA------------------------------------------------ -----------------------------TGGCT-------------------------- ------------------GGATCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATC--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCCTGTG-------------- ---------------------------AC-CCCCACT-C-TGCCCACCAGAGAACAAACC CCC-TTT----------TTCCTTTACCTACTCA-AATCCTATAA-----------AACG- GCCCCACCC-C---ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA---------TTAAAAGCTTTATTGCTCACATAAAGCCTG--TTT--GGTGGTCT CTTCACACGGATGCACATG---------- >LTR7d1_chr14_9597303195978860_3275_ZNF534_KAP1_EncodeTxn_GRO2of7__chr14_9597303195973430____1398 -GTCAGGACTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCCGTGAC---------------------------------------------CTGCACA TACGCATCCAGA------------------------------------------------ -----------------------------TGGCT-------------------------- ------------------GGTTTCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATACTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACT-C-TGCCCGCCAGAGAACAACTC CCC-T-T----------TTCCTTTACCTACCCA-AATCCTATAA-----------AATG- GCACCACCC-C-T-ATCTCCCCTTGCTGACTCTCTTTTCGGACTCAGCCCACGTGCACCC AGGTGA---------TTAAAAGGTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGCACATGA--------- >LTR7d1_chr16_7814737_7820397_4211_1_EncodeRepressed_GRO3of7_7down____chr16_78147377815094____1357 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCAATCATATCC CCTGTGGC---------------------------------------------CTGCATG TACACATCCAGC------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCATTAACTGAT----------------------- ------------------------------------------------------------ ---------------------------------------------------------GAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACT-C-TGCCTGCCAGAGAACAACCC CCC-TTTGACTGTAATTTTCCTTTATGTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACACGCATGA--------- >LTR7d1_chr12_8812977_8813333_h3k27ac_EncodeRepressed_SOLO_7down____chr12_88129778813333____1356 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCT CCTGTGGC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ------------------------------------------------------------ ---------------------------------------------------------GAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACT-C-TGCCCGCCAGAGAACAACCC CTC-TTTGACTGTAATTTTCCTTTACCTACCCG-AATCCTATAA-----------AACG- ACCCCACCC-C---ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA---------TTAAAAGCTTTATTGCTTACACAAATCCCG--TTT--GGTGGTCT CTTCACACGGACGCACATGA--------- >LTR7d1_chr10_116480675_116486518_4892_ZNF534_ZNF90_KAP1_EncodeTxn_7down____chr10_116480675116481083____1408 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCT-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGCCCTGTTCC------------------- ------------TG------------------CT----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGTTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----AACCCTGTG-------------- ---------------------------AC-CCCCACT-C-TACCCGCTAGAGAACAACCC CCC-TTTGACTGTAATTTTCTTTCACCTACCCA-AATCCTATAA-----------AACG- GTCCCACCC-C-T-ATCTCCCCTCACTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GATGGTCT CTTTACACGGACACGCATGA--------- >LTR7d1_chr12_8804879_8810576_3190_ZNF534_k4me3_weakenh_NANOG_GRO1of7_7down____chr12_88048798805281____1402 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCTATCATATCC CCTGTGAC---------------------------------------------CT----- -ACACATCCAGG------------------------------------------------ -----------------------------TGGCT-------------------------- ------------------TGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATAAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--ATGAAATTCCTTCTCCTGG-------------- ----CTCACCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCATT-A-TGCCCGCCAGAGAACAACTC CCC-TTTGACAGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGTGCATGA--------- >LTR7d2_chr21_1689221016898240_4614_ZNF534_KAP1_EncodeTxn_GRO2of7__chr21_1689221016892611____1401 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCATG TACACATCCAGG------------------------------------------------ -----------------------------TGGCT-------------------------- ------------------GGTTCCTGCCTTAACTGAG----------------------- ---GACATTCCACCACCAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAACTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACCTTGTG-------------- ---------------------------AC-ACCCAGT-C-TGCCCACCAGAGAACAACTC CCC-TT----------TTTCCTTTACCTACCCA-AATCCTATAA-----------AAGG- GCCCCACCC-C-T-ATCTTCCTTTGCTGACTCTCTTTTCAGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGATGGGCATGA--------- >LTR7d2_chr9_115174652_115180335_3138_ZNF534_weakenh_NANOG_GRO3of7_C_7down___chr9_115179932115180335___1393 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC ACTGTGAC---------------------------------------------TTTCATG TACACATCCAGA------------------------------------------------ -----------------------------TGGTT-------------------------- ------------------GGTTCCTGCCTTAAATGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTGGA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TATCTTGTG-------------- ---------------------------AC-CCCCACT-C-TGGCCACCAGAGAACAACCC CGC-TT----------TTTCCTTTATTTACCCA-AATCCTATAA-----------AACG- TCCCCACCC-T-T-ATCTCCCTTGGCTGACCCTCTTTTCGGACTCAGCCCAGCTGCACCC AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTC-CATGGATG---------------- >LTR7d2_chr13_63213193_63219132_3448_ZNF534_KAP1_EncodeTxn_GRO3of7_7down____chr13_6321319363213548____1355 -GTCAGGCCTCTGAGCCCAAA-----------------------CTAAGCCATCATATCT CCTGTGAC---------------------------------------------CTGCATG TACATATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAA---------------------------- ------------------------------------------------------------ ----------------------------------------------------CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAACTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGTTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACT-C-TGCCCACCAGAGAACAACCC CCC-TTTGACTGTAATTTTCCTTCACCTACCCA-AATCCTAT---------------TG- GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCTTCGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCCCACGGACGTGCATGA--------- >LTR7d2_chr8_888877_889287_enh_SOLO_NANOG_C_7down___chr8_888877889287___1410 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCACA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTTCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CTCCAGT-C-TGCCCGCCAGAGAACAACCC CCC-TTTGACTGTAATTTTCCTTTATCCACCCA-AATCCTATAA-----------AATG- GCCCCACCC-C-T-ATCTCCCTTCAATGACTCTCTTTTCGGACTCAGCCCACCTGCATCC AGATGA-----AA--TAAACAGCTTTATTGCTCACACAAAACCTG--TTT--GGTGGTCT CTTCACACGGACAAGCATG---------- >LTR7d2_chr14_46012433_46018103_4355_ZNF534_EncodeRepressed_NANOG_C_7down___chr14_4601769746018103___1406 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACA TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTCAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACT-C-TGCTCGCCAGAGAACAACCC CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AATG- GCCCCACCC-C-T-ATCTCCCTTCGCT----CTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACACACATG---------- >LTR7d2_chr6_144869847_144870256_h3k27ac_EncodeRepressed_SOLO_NANOG_C_7down___chr6_144869847144870256___1409 TGTCTGGCCTCTGAGCCCAAG-----------------------ATAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACA TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCTGCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACCTTGTG-------------- ---------------------------AC-CCCCACT-C-TGCCCGCCAGAGAACAACCC CC--TTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AATG- GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAACCCACCTGCCCCC AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACACGCATG---------- >LTR7d2_chr6_164652142_164658014_3526_ZNF534_EncodeTxn_GRO3of7_C_7down___chr6_164657654164658014___1359 TGTCAGGCCTCCGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCATG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------G----------------------------------------- -------------------------------------TTCC------------------- ------------TG------------------CC----------TTAA----TTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAT--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACCTTGTG-------------- ---------------------------AC-CCCCACT-C-TGCCCGCCAGAGAACAAACC CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AATG- GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTTGGACTCAGCCCACCTGCCCCC AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACAGGGACACGCATG---------- >LTR7d2_chr3_70434672_70440419_3011_ZNF534_ZNF90_EncodeRepressed_GRO4of7_C_7down___chr3_7044001070440419___1406 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACA TACACATCCATA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--GAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACT-C-TGCCCGCCAGAGAACAACCC CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AATG- GCCCCATCC-C-T-ATCTCCCTTTGCTGACTCTATTTTTGGACTCAGCGCACCTGCACCC AGGTGA-----AA--TAAACAGCTTTATTGCTAACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGT--------------- >LTR7d2_chr12_62729867_62730257_enh_SOLO_FOXP1_NANOG_7down____chr12_6272986762730257____1390 --------------------G-----------------------ATAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTTCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATG--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCCTGTG-------------- ---------------------------AC-CCCCACT-C-TGCCCGCCAGAGAACAACCC CCC-TTTGACTGTAATTTTCCTTTACCTACCCG-AATCCTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACCTGCATCC AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGAGGCACATG---------- >LTR7d2_chr5_124303758124309476_3253_ZNF534_KAP1_EncodeTxn_GRO2of7__chr5_124303758124304213____1404 ---CAGGCCTCTGAGCTTAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GGCATTCCACCACAAAAGAAATGAAAATGGCCTGTCCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCAGCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACC-C-TGCCCGACAGAGAACAACCC CCC-TTTGACTGTAATTTTCCTTTACCCA-----AATCTTATAA-----------AGCG- GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACCCACACCC AGGTGA------T--TAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGCACATGA--------- >LTR7d1_chr11_36479493653636_4719_ZNF534_ZNF90_KAP1_EncodeTxn_NANOG_GRO2of7__chr11_36479493648306____1357 -GTCAGGCCTCTGAGCCGAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACA AACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAA---------------------------- ------------------------------------------------------------ ----------------------------------------------------CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACT-C-TGCCTGCCAGAGAACAACCC CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T---ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGTCCACCTGCACCC AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTGT CTTCACACGGACGCGCATGA--------- >LTR7d2_chr2_203961942_203967634_4721_ZNF534_ZNF90_KAP1_EncodeTxn_GRO4of7_C_7down___chr2_203967278203967634___1356 TGTCAGGCCTCTGAGCCTAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACA TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------AATTCCTGCCTTAA---------------------------- ------------------------------------------------------------ ----------------------------------------------------CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAGTTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACT-C-TGCCTGCCAGAGAACAACCC CCC-TTTGACTGTAATTTTCCTTTACATACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C---ATCTCCCTTCGCTGACTCT--TTTCGGACTCAACCCACCTGCACCC AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGACGCACATG---------- >LTR7d2_chr10_80910389_80910748_weakenh_SOLO_NANOG_C_7down___chr10_8091038980910748___1358 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCGTCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGG------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAA---------------------------- ------------------------------------------------------------ ----------------------------------------------------CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCTCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACT-C-TGCCTGCCAGAGAACAACCC CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACA- GCTCCACCC-C---ATCTCCCTTCGCTGACTCTCTTTTCCGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCTTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATG---------- >LTR7d1_chr4_167876312167882021_2857_ZNF534_KAP1_weakenh_NANOG_OCT4_SMAD11_SOX2_TCF4_GRO2of7__chr4_167876312167876709____1397 -GTCAGGCCTCTGAGCCTAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCAGG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAAT-GCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ACT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAA-TTCCTTCTGCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACCTTGTG-------------- ---------------------------AC-CCCCATTCC-TGCCCACCAGAGAACAACCC CCC-TT----------TTTCCTTTACCTACCCA-AATCCTATAA-----------AATG- GCCCCACCC-C-T-ATCTCCCTTCATTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGT-----TA--AAAGA---TTTATTGCTCACACAAAGCCCG--TTT--GGCAGTCT CTTCACACGGATGCACATGA--------- >LTR7d2_chr7_121563649_121569668_4421_ZNF534_ZNF90_KAP1_EncodeTxn_NANOG_GRO4of7_C_7down___chr7_121569270121569668___1397 TGTCAGGCCTCTGAGCCTAAG-----------------------CTAAGCCATCATATCA CCTGTGAC---------------------------------------------CTGCACA TACACATCCAGA------------------------------------------------ -----------------------------TGACC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTAAAATTCCTTCTGCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACCTTGTG-------------- ---------------------------AC-CCCAACTCC-TGCCCGCCAGAGAACAACCC CCC-TT----------TTTCCTTTACCTACCCA-AATCCTACAA-----------AATG- GCCCCACCC-C---ATCTCCCTTCGCTGACTCTCTTTTTGGACTCAGCCCACCTGCACCC AGGTGT-----TA--AAAGC---TTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGATACGCATG---------- >LTR7d2_chr19_5262779552633395_4482_KAP1_EncodeTxn_GRO2of7__chr19_5262779552628192____1392 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC C--GTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------AGTTCCTTCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ACT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--TTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACGTTGTG-------------- ---------------------------AC-ACCCACTCC-TGCCCACCAGAGAACAACCC CCC-TT----------TTTCCTTTACCTACCCA-AATCCTATAA-----------AATG- GCCCAACCC-C-T-ATCTCCCTTT----ACTCTCTTTTTGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAAG---TTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACACGCATGA--------- >LTR7d2_chr7_147166558_147166914_EncodeRepressed_SOLO_C_7down___chr7_147166558147166914___1356 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCATG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------------------------------------------------ ------------------------------------GTTCC------------------- ------------TG------------------TC----------TTAA----TTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTACTTCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACCTTGTG-------------- ---------------------------AC-CCCCACTC--TGCCCACCAGAGAA--ACCC CCC-TT----------TTTCCTTTACCTACCCA-AATCCTATAA-----------AATG- GCCCCACCC-C---ATCTCCCTTCACTAACTCTCTTTTCAGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCACAAG---------- >LTR7d2_chr1_198034651_198040990_3140_ZNF534_KAP1_EncodeTxn_GRO4of7_7down____chr1_198034651198035056____1402 -GTCAGGCCTCTGAGCCCAAA-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------AGTTCCCGCCTCAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTATTCC------------------- ------------TG------------------CC----------TTAA----TTGATGAT ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACCTTGTG-------------- ---------------------------AC-CC-CACTC--TGCCCTCCAGAGAACAACCC CCC-TT----------ATTCCTTTACCTACCCA-AATCCTATAA-----------AATG- GCCCCGCCC-C---ATCTGCCTTCACTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC AGGTGA-----AA--T------TTTTATTGCTCACACAAAGCCTA--TTT--GGTGGTCT CTTTACACAGATGCACATGA--------- >LTR7d2_chrX_138264358138270033_4392_1_EncodeTxn_NANOG_GRO2of7__chrX_138269633138270033___1400 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGTCATCATATCC CCTGTGAC---------------------------------------------CTGCACA TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------AGTGCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTACTCCTGG-------------- ----CTCAACCTGGCTCAA--AAGCTCCCTCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCTACCAGAGAACAACCC CCC-TT----------CTTCCTTTACCTACCCA-AATCCTATAA-----------AATG- GCCCCACCC-C---ATCTCCCTTCGCTGACTCTCTTTTCAGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGTTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGGCGCACATG---------- >LTR7d2_chr2_224296633224302363_4691_ZNF534_KAP1_EncodeTxn_chimeric_GRO2of7__chr2_224296633224297043____1410 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCT-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----AACATTGTG-------------- ---------------------------AC-CTCCACTT--TGCCCGCCGGAGGACAACCC CCC-TT----------TTTCCTTTACTTACCCA-AATCCTATAA-----------AATG- GCCCCACCC-C-T-ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGACACGCATGA--------- >LTR7d2_chrX_57336041_57336451_h3k27ac_weakenh_SOLO_NANOG_44108_7down____chrX_5733604157336451____1410 -GTCAGGCCTCCGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCAGG TACACATCCAGA------------------------------------------------ -----------------------------TGGCT-------------------------- ------------------GGTTCCTACCTTAACTAAT----------------------- ---GACATTCCACCACAAAAGAAGGGAAAATAGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCGTTCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACCTTGAG-------------- ---------------------------AC-CCCCATTC--TGCCCGCCAGAGAAGAACCC CTC-TT----------TTTCCTTTACCTACTCA-AATCCTATAA-----------AATG- GCCCCACCC-C-T-ATCTCCCTTCATTGACTCTCTTTTCAGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCTTTATTGCTCACAGAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATGA--------- >LTR7d2_chr2_7905140079057072_4373_ZNF534_KAP1_EncodeRepressed_GRO2of7__chr2_7905140079051798____1397 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATGTCC CCTGTGAC---------------------------------------------CTGCACG TTCACATCCAGA------------------------------------------------ -----------------------------TTTCC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------AC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTTTCCTGG-------------- ----CTCATCTTGGCTCAA--AAGCTCTCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACCTTGTG-------------- ---------------------------AC-CCCCAGTC--TGCCCGCCAGAGAACCCCCC T----T----------TTTCCTTTACCTACCCA-AATCCTATAA-----------AATG- GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGATGCACATGA--------- >LTR7d2_chr2_224225331_224230986_4575_ZNF534_EncodeRepressed_NANOG_7down____chr2_224225331224225728____1396 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTATGAC---------------------------------------------CTGCACG TACACATCCAGG------------------------------------------------ -----------------------------TCGCT-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACCTTGTG-------------- ---------------------------AC-CCCCACTC--TGCCCGCCAGAGAACAACCC C----T----------TTTCCTTTACCTACCCA-AATCCTATAA-----------AATG- GCTCCACCC-C---ATCTCCCTTCGCTGACTCTCTTTTCAGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCTCATGA--------- >LTR7d2_chr11_3398785_3399193_EncodeTxn_SOLO_NANOG_7down____chr11_33987853399193____1408 -GTCAGGCCTCTGAGCTCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AACCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACCTTGTG-------------- ---------------------------AC-CCCCATTC--TGCCCGCCAGAGAACAACCC CCC-TT----------TTTCCTTTACCTACCCA-AATCCTATAA-----------AATG- GCCCTACCC-C-T-ATCTCCCTTCTCTGACTCTCTTTTC--ACTCAGCCTGCCTGCACCC ATGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTAT CTTCACACGGACGCGCATGA--------- >LTR7d2_chr8_10571081_10577329_4734_ZNF534_EncodeTxn_7down____chr8_1057108110571481____1400 -GCCAGGCCTCTGAGCCCAAG-----------------------CTAAACCATCATATCC CCTGAGAC---------------------------------------------CTGCACG TACACTTCCAGA------------------------------------------------ -----------------------------TGGCA-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TA------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TAACTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACA-CCC CCC-TT----------TTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCTCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCAGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATGA--------- >LTR7d2_chr13_9764231897648209_4854_ZNF534_ZNF90_KAP1_EncodeTxn_GRO2of7__chr13_9764231897642715____1395 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCAT-----CC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----AAACTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAACCC CCC-TT----------TTTCCTTTACCTACCCA-AATTCTATAA-----------AACA- GCCCCACCC-C---ATCTCCCTTAGCTGACTCTCTTTTCAGACTCAGCCCACCTGCACTC AAGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCACATGA--------- >LTR7d2_chr6_140257496_140263080_1905_ZNF534_ZNF90_KAP1_EncodeRepressed_NANOG_GRO4of7_C_7down___chr6_140262670140263080___1410 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCATG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---AACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCTCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACCTTGTG-------------- ---------------------------AC-CCCCACT-C-TGCCTGCCAGAGAACAACCC CCC-TT----------TTTCCTTTACCTACCCA-AATCCTGTAA-----------AACA- GTCCCACCC-C-T-ATGTCCCTTTGCTGACTCTCTTTTCAGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGCACATG---------- >LTR7d2_chrX_33104306_33104707_EncodeTxn_SOLO_FOXP1_NANOG_SMAD11_7down____chrX_3310430633104707____1401 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAT---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TTGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAACCC CCC-TT----------TTTCCTTTATCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C---ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCTTTATGGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGTATGA--------- >LTR7d2_chrX_86981884_86987487_3116_ZNF534_k27ac_EncodeRepressed_KLF4_NANOG_44108_SMAD11_TCF4_GRO3of7_7down____chrX_8698188486982284____1400 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAT---------------------------------------------CTGCACA TACACATCCAGA------------------------------------------------ -----------------------------TGGGC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAAACC CCC-TT----------TTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GTCCCACCG-C---ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACACGCATGA--------- >LTR7d2_chr8_63497054_63497454_EncodeRepressed_SOLO_NANOG_7down____chr8_6349705463497454____1400 -ATCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGGC---------------------------------------------CTGCATG TACACATCTAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACCTTGTG-------------- ---------------------------AT-CCCCACTCC-TGCCTGCCAGAGAACAACCC CCC-TT----------TTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C---ATCTCTCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCATCC AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGATGCGCATGA--------- >LTR7d2_chr14_48262396_48268282_3168_ZNF534_TSS_NANOG_SMAD11_SOX2_wanghigh_GRO1of7_C_7down___chr14_4826787248268282___1410 TGTCATGCCTCTGAGCCTAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TAGCC-------------------------- ------------------CATTCCTGCCTTAAGTGAT----------------------- ---GACATTCCACCACAAAATAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTAATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGA-------------- ----CTCATCCTGGCTTGA--AGGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACATTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGACAACAACCC CGT-TT----------TTTCGTTTACCTACCCA-AATCTTATAA-----------AACA- GCCCCACCC-C-T-ATCTCCCTTCACTGACTCTCTTTTCAGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATG---------- >LTR7d2_chr7_78577478_78577880_h3k27ac_weakenh_SOLO_NANOG_44108_SMAD11_SOX2_C_7down___chr7_7857747878577880___1400 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TCGCC-------------------------- ------------------AGTTTCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAGAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAACCC CCC-TT----------TTTCCTTTACCTACCCA-AATCCTATAA-----------AACA- GCCCCACCC-C-T-ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGTGCATG---------- >LTR7d2_chr6_123582336_123588007_4656_ZNF534_k4me3_weakenh_NANOG_GRO4of7_C_7down___chr6_123587607123588007___1400 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TCGAC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---AACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAACCC CCC-CT----------TTTGCTTTACCTACCCA-AATCCTATAA-----------AACA- GCTCCACCC-C-T-ATCTCCCTTCACTGACTCTCTTTTTGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TT---GGTGGTCT CTTCACACGGACGCACATG---------- >LTR7d2_chr4_138927836_138933543_4578_ZNF534_ZNF90_KAP1_EncodeRepressed_7down____chr4_138927836138928235____1397 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGACC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CT----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAAC----C CCC-TT----------TTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AG--TAAACAGCTTTATTGCTCACACAAATCCTG--CTT--GGTGGTCT TTTCACACAGACGTGCATGA--------- >LTR7d2_chr3_187466299_187472000_4418_ZNF534_KAP1_EncodeRepressed_C_7down___chr3_187471594187472000___1405 TGTCAGCCCTCTGAGCCCAAG-----------------------CTAAGCC---ATATCC CCTGTGAC---------------------------------------------CTGCATG TACACATCCAGA------------------------------------------------ -----------------------------TGGGC-------------------------- ------------------AGTTCCTGCCTTAACTGCT----------------------- ---GACATTCTACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ACT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACCTTGTG-------------- ---------------------------AC-CCCCACT-C-TGCCCGCCAGAGAACAACCC CCC-TT----------TTTCCTTTACCTACCCA-AATCTTATAA-----------AATG- GCCCCACCC-C-T-GTCTCCCTTCACTGAC--TCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCTTTACTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGACGTGCATG---------- >LTR7d2_chr4_23797848_23798248_weakenh_SOLO_NANOG_7down____chr4_2379784823798248____1400 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC TCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACAACGAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCAAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GGG----TACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAACCC CC--CT----------TTTCCTTTACCTACCCA-AATCTTATAC-----------AACG- GCCCCACCC-C---ATCTCCCTTCTCTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCTTTACTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACACGCATGA--------- >LTR7d2_chr2_156720084_156725844_4499_ZNF534_KAP1_EncodeTxn_NANOG_GRO3of7_C_7down___chr2_156725433156725844___1410 TGTCAGTCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCATG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTT--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAACCC CC--TT----------TTTCCTTTACCTACCCA-AATCTTATAA-----------AACG- GCCCCACCC-C---ATCTCCCTTCGCTGACTCTCTTTTCAGACTCAGCCCGCCTGCGCCC AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATG---------- >LTR7d2_chr3_192071109_192076858_4453_1_EncodeTxn_NANOG_GRO4of7_C_7down___chr3_192076445192076858___1410 TGTCAGGCCTCTGAGCCCAAG-----------------------TTAAGCCATCATATCC CCTGTGAC---------------------------------------------CCGCATG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GCC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAACCC CC--TT----------TTTCCTTTACCTACCCA-AATCTTATAA-----------AACG- GCCCCACCC-C---ATCTCCCTTGGCTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCT AGGTGA-----AA--TAAACAGCTTTATTGCTCACGCAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGCGCATG---------- >LTR7d2_chr11_70213950_70214361_weakenh_SOLO_NANOG_SMAD11_C_7down___chr11_7021395070214361___1411 TGTCAGGCCTCTAAGCCCCAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAACCC CCC-TT----------TTTCCTTTACCTACCCA-AATCTTATAA-----------AAAG- GCCCCACCC-T---ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCTCGCCTGCACCC AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--AGTGGTCT CTTTACATGGACGCAAGTG---------- >LTR7d2_chr9_98273823_98274231_h3k27ac_EncodeRepressed_SOLO_NANOG_C_7down___chr9_9827382398274231___1408 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTATTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACCTTGTG-------------- ---------------------------AC-CTCCACTCC-TGCCCGCCAGAGTACAACCC CCC-TT----------TTTACTTTACCTACCCA-AATATTATAA-----------AACG- GCCCCACCC-C---ATCTCCCTGCACTGA--CTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGAAGCGAGTG---------- >LTR7d2_chr3_145710495_145716095_3035_ZNF534_KAP1_EncodeTxn_GRO3of7_7down____chr3_145710495145710846____1349 -GTCGGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACA TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------TGTTCCTGCCT------------------------------- ------------------------------------------------------------ ---------------------------------------------TAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--ATGAAATTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCCTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACACGCC CAC-TT----------TTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C---ATCTCCCTTCGCTGACATTCTTTTTGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTC--GGTGGTCT GTTCACACAGACGCACATGA--------- >LTR7d2_chr1_38425114_38430779_4320_transcribed_ZNF534_k4me3_TSS_NANOG_44108_wanghigh_GRO1of7_7down____chr1_3842511438425524____1410 -GTCAGGTCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACT-C-TGCCCACCAGAGAACAACCC CCC-TT----------TTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCACTGACTCTGTTTTTGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTC--TTT--GGTGGTCT CTTCACGCGGACGCACATGA--------- >LTR7d2_chr18_42737046_42742345_2894_1_k27ac_EncodeRepressed_GRO1of7_7down____chr18_4273704642737438____1391 -GTCAGGCCTCTGAGCCCAAG-----------------------CGAAGCTGTCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGG---------------------------- --------------------------CCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ACT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAT--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAACCC CCC-TT----------TTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTCAGACTCAGCCTGCCTGCAACC AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTC--TTT--GGTGGTCT CTTCACACAGACGCGAGTGA--------- >LTR7d2_chr2_173304187_173304589_EncodeTxn_SOLO_NANOG_C_7down___chr2_173304187173304589___1401 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCTTCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCT-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCTTTTTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAACCC CCC-TT----------TTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCAACC-C-T-ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCACATG---------- >LTR7d1_chr8_3237992_3243711_3347_1_k4me3_EncodeRepressed_GRO3of7_C_7down___chr8_32433213243711___1378 TGTCAGGCCTGTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCATG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGCAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAACTCCCCTGC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CATCTTGTG-------------- ---------------------------AC-CCCCACACC-TGCCCCCCAGAAAACAACCC CCT-TTT----------TTCCTTTACCTACTCA-AA------------------------ --------------GTCTCCCTTCAGTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----T---AAACA-GCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTGT CTTCACATGGACGCGAGTG---------- >LTR7d1_chr13_104207593_104213824_2340_ZNF534_KAP1_EncodeRepressed_NANOG_GRO3of7_C_7down___chr13_104213422104213824___1392 TGTCAGGCTTCTGAGTCCAAG-----------------------CTAAGCCATCCTATCC CCTGTGAC---------------------------------------------CTGCATG TATACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------TC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CC---CACC-TTCCCGCCAGAGAACAACCC CCT-TTT----------TTCCTTTACCTACCCA-AATCCTATAA-----------AATG- GCCCCACCC-A-T-ATCTCCCTTCA----CTCTCTTTTCGGACTCGGCCTACCTGCACCC AGGTGA-----T---TAAAA-GCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACAGGGACGCGAGTG---------- >LTR7d1_chr10_25902389_25902799_EncodeTxn_SOLO_C_7down___chr10_2590238925902799___1409 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACA TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAACGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CATCTTGTG-------------- ---------------------------AC-CCCTACTCC-TGCCCGCCAGAGAACAACCC CCC-TTT----------TTCCTTTACCTACCCA-AATCTTATAA-----------AATG- GACCCACCC-C-T-ATCTCCCTTCGTTGACTCTCTTTTCGGACTCACCCCACCCACACCC AGGTGA-----T---TAAAA-GCTTTATTGCTCACACAAAGCCTG--TTT--AGTGGTCT CTTCACATGGACGCGAGTG---------- >LTR7d1_chr3_31506596_31507006_h3k27ac_weakenh_SOLO_C_7down___chr3_3150659631507006___1410 TATCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCATG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------CATTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCGCAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TAAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCATTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------A---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAACCC CCC-TTT----------TTCCTTTACCTACCCA-AATTTTATAA-----------AACA- GCCCCACCC-T-T-ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----T---TAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGTTCT CTTCACACGGACGCGAGTG---------- >LTR7d1_chr12_30056081_30062516_3142_ZNF534_EncodeTxn_GRO3of7_7down____chr12_3005608130056491____1410 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACA TACGCATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGGAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTAG-------------- ----CTCATCCTGGCTCAG--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TTCCCGCCAGAGAACAACCC CCT-TTT----------TTCCTTTACCTACCCA-AATCTTATAA-----------AACC- GCCCCATCC-C-T-ATCTCCCTTCACTGACTCTCTTTTTGGACTCAGCCCGCCTGCCCCC AGGTGA-----T---TAAAAAGCTTTATTCCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGAACACGAGTGA--------- >LTR7d1_chr5_45112438_45112846_h3k27ac_EncodeRepressed_SOLO_C_7down___chr5_4511243845112846___1407 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC TCTGTGAC---------------------------------------------CTGCACG TACACATACAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAT ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATA--------TT--GTGAATTTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCC-ACTCC-TGCCCACCAGAGAAAAACCC CCC-TTT----------TTCCTTTACCTACCCA-AGTCTTATAA-----------AACG- GTCCCACCC-C---ATTTCCCTTCGCTGAGTCTCTTTTCAGACTCAGCCTGCCTGCACCC AGGTGA-----T---T-AAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGAGTG---------- >LTR7d1_chr10_91301350_91307329_2503_ZNF534_EncodeRepressed_C_7down___chr10_9130692291307329___1407 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCATG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAC----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCCA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAACCC -CC-TTT----------TTCCTTTACCTTCCCA-AATCTTATAA-----------AATG- GCCCCACCC-C---ATCTCCCTTTGCTGACTTTCTTTTCAGACTCAGCCCTCCTGCAACC AGTTGA-----T---T-AAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGATGCAAGTG---------- >LTR7d1_chr2_192918303_192924835_2913_ZNF534_EncodeTxn_GRO3of7_7down____chr2_192918303192918721____1399 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCATG TACACATCCAGA------------------------------------------------ -----------------------------TGGCT-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------CTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTGC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTGGTG-------------- ---------------------------AC-CCCCACCCC-TGCCCACCAGAGAATAACCC -CC-CTT----------TTCCTTTACCTACCCA-AATCTTATAA-----------AACA- CCCCATCCC-T---ATCTCCCTTCGCTGACTCTCTTTTCAGACTCAGCCCTCCTGCACCC AGGTGA-----T---T-AAAAGCTTTATGGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACACAAGTGA--------- >LTR7d1_chr9_29902369_29902777_EncodeRepressed_SOLO_C_7down___chr9_2990236929902777___1408 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTACTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAACCC CCC-TTT----------TTACTTTACCTACCCA-AATCCTATAA-----------AATG- GCCCCACCC-C-T-ATCTCCCTTCGCTGA--ATCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----T---TAAAAAGCTTTATTGCTCATACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGATGCGAGTG---------- >LTR7d1_chr4_1236388812369679_3258_ZNF534_KAP1_k27ac_TSSflanking_NANOG_GRO2of7__chr4_1236388812364267____1377 ----------------------------------------------AAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCAGG TACACATCCAGA------------------------------------------------ -----------------------------TGGCT-------------------------- ------------------GGTTCCTGCCTTAAATGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGTCAGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCCCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CAACTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAACAC CCC-TTT----------TTCCTTTACCGACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C---ATCTCCCTTCGCTGACTCTCTTTTCAGACTCAGCCTGCCTGCACCC TGGTGA-----T---TAAAAAACTTTATTGTTCACACAAAGCCTG--TTT--GGCAATCT CTTCATACAGATACGAGTGA--------- >LTR7d1_chr2_197709362_197709729_TSSflanking_SOLO_C_7down___chr2_197709362197709729___1367 -GTCAGGCCTCTGCACCAAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGTC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGGCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAT ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTTTCCTGG-------------- ----CTCATCCTGGTTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACCCC-TGCCCGCCAGAGAAC----C CCC-TTT----------TTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C---ATCTCCCTTCGCTGACTCTCTTTTCCGACTCAGCCCGCCTGCACCC AGGTGA-----T---TAAAAAGCTTTATTGCTCACACA---------------------- ----------------------------- >LTR7d1_chrX_55868217_55868626_EncodeRepressed_SOLO_7down____chrX_5586821755868626____1409 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCAGG TACACATCCAGA------------------------------------------------ -----------------------------TAGCT-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGTTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCTCGCCCC-TGCCCACCAGAGAACAAC-C CCC-TTT----------TTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C---GTCTCCCTTCCCTGACTCTCTTTTCAGACTCAGCCTGCCTACTCCC AGGTGA-----T---TAAAAAGCTTCATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGAGTGA--------- >LTR7d1_chr9_131547214_131551936_2158_ZNF534_enh_GRO4of7_7down____chr9_131547214131547620____1406 -GTCAGGCCTCCGAGCCAAAG-----------------------CTAAGCCATCATATCC CCTGTGAA---------------------------------------------CTGCATG TACACATCCAGA------------------------------------------------ -----------------------------TGGCG-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGGAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCTCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-TCCCACCCC-TGCCCACCAGAAAAGAAC-C CCC-TTT----------TTCCTTTACCTACGCA-AATCCTATAA-----------AACG- GCCCCACCC-C---ATGTCCCTTCGCTGAC--TCTTTTCGGACTCAGCCTACCTGCACCC AGGTGA-----T---TCAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGAGTGA--------- >LTR7d1_chr3_143116997_143117412_weakenh_SOLO_C_7down___chr3_143116997143117412___1408 TGTCAGGCCTCTGAGCCAAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCATG TACACATCCAGA------------------------------------------------ -----------------------------TGGCT-------------------------- ------------------GGTCCTTGCCTTAACTGAT----------------------- ---GACATTCCACTACAAAAGAAGTGAAAATGG-CAGGTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AT-CCCCCCCCC-TGCCCACCAGAGAACAAC-C CCC-TTT----------TTCCTTTACCTGCCCA-AATCCTATAA-----------AACG- GCCCCACCC-T---ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----T---TAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACTGATGCGAGTG---------- >LTR7d1_chr7_100922282_100928020_2913_ZNF534_k27ac_EncodeTxn_GRO3of7_7down____chr7_100922282100922669____1383 --------CTCTGAGCCAAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGC--------------------------- -----------------------CTGAAGTAACTGAA----------------------- ---GA------ATGACAAAAGAAGTGAAAATGGCCTTTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--CTGAAATTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AT-CCCCACCCC-TGCCCACCAGAGAAC--C-C CCC-TTT----------TTCCTTTACCTACCCA-AATCTTAAAA-----------AATG- GCCCCACCC-C---ATCTCCCTTCGTTGACTCTCTTTTCGGACTCAGCCTGCCTGTACCC AGGTGG-----T---TA-AAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGTGAGTG---------- >LTR7d1_chr13_97652418_97652827_EncodeRepressed_SOLO_C_7down___chr13_9765241897652827___1409 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTT-------------- ---------------------------AC-CCCCACCCC-TGCCCACCAGAGAACA-CCC CCC-TTT----------TTCCTTTACCTACCCA-AATCTTATAA-----------AACA- GCCCCACAC-C-T-ATCTCCCTTCGCTGACTGTCTTTTCAGACTCAGCCCGCCTGCACCC AGGTGA-----T---TAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACACGAGTG---------- >LTR7d1_chr3_179517069_179522482_2680_ZNF534_EncodeRepressed_GRO5of7_GRO6of7_GRO7of7_7down____chr3_179517069179517479____1410 -GTCAGGCCTCAGAGCCCAAG-----------------------CTAAGCCATCATATTC CCCGTGAC---------------------------------------------CTGCACA TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAT ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTGC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACCCC-TGCCTACCAGAGAACAACCC CCC-TTT----------TTCCTTTACCTACCCA-AATCTTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCGCTGACTGTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----T---TAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACATGAGTGA--------- >LTR7d1_chr18_35216028_35222512_3016_ZNF534_weakenh_7down____chr18_3521602835216409____1380 ---------------------------------------------TAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCATG GACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AATCTCCCCCAG--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACCCC-TGCCCGCCAGAGAACAACCC CCC-TTT----------TTCCTTTACCTACCCG-AATGTTATAA-----------AACA- GCTCCACCC-C-T-ATCTTCCTTCGCTGACTCTCTTTTCGGATTCAGCCTGCCTGCACCC AGGTGA-----T---TAAAAAGCTCTATTTCTCACACAAAGACTG--TTT--GGTGGTCT CTTCACATGGACGCGAATGA--------- >LTR7d2_chr21_26227879_26233487_2979_KAP1_EncodeTxn_NANOG_GRO3of7_C_7down___chr21_2623308426233487___1401 TGTCAGGCCTCTGAGCCTAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------TTGCACA TACACATCCAGA------------------------------------------------ -----------------------------TAGCT-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAATGAAAATGGCTTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTGC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAACCC CCC-TTT----------TTCCTTTACCTACCCA-ACTCCTATAA-----------AACG- GCCCCACTC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACACGAGTG---------- >LTR7d2_chr14_106659969_106660370_EncodeRepressed_SOLO_C_7down___chr14_106659969106660370___1401 TGTCAGGCCTCTGAGCCCAAG-----------------------ATAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACA TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAATGGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTATTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAT ACT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCTCTCC-TGCCCGCCAGAGAACAACCC CCC-TTT----------TTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCAGACTCAGCCCGCCTGCCCCC AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACACGAGTG---------- >LTR7d2_chr9_81009084_81015281_1916_ZNF534_EncodeTxn_GRO3of7_7down____chr9_8100908481009481____1397 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGACATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GATATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGTTGTC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTATAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGTCCGCCAGAGAACAACCC CCC-TTT----------TTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCT----GGACTCAGCCCGCCTGCACCT AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACACGAGTGA--------- >LTR7d2_chr7_31466860_31472379_3225_ZNF534_EncodeRepressed_chimeric_C_7down___chr7_3147197731472379___1401 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC ACTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--CTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGCGAACAACCC CCC-TTT----------TTCCTTTACCTACCCA-AATCCTGTAA-----------GATG- GCCCCACCC-C-T-ATCTCCCTTCTCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAATCCTG--TTT--GGTGGTCT CTTCATATGGACACGAGTG---------- >LTR7d2_chr9_3810901_3816765_3267_ZNF534_EncodeRepressed_GRO4of7_C_7down___chr9_38163673816765___1398 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCT-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCACCAGAA---AATCC CCC-TTT----------TTCCTTTACCTACCCA-AATCCTATAA-----------AACA- GCCCCACCC-C-T-ATCTCCCTTCACTGACTCTCTTTTTGGACTCAGCCTGCCTGCACCC AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GATGGTCT CTTCACACGGAAGCAAGTG---------- >LTR7d2_chr2_3543692835442587_3168_1_k4me3_EncodeTxn_NANOG_wanghigh_GRO2of7__chr2_3544218635442587___1401 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACC TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGGC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGGG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAAAACAACCC CCC-TTT----------TTCCTTTACCTACCCA-AATCCTATAA-----------AATG- GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCAAGTG---------- >LTR7d2_chr4_189925901_189931855_3216_ZNF534_KAP1_EncodeTxn_7down____chr4_189925901189926292____1391 -GTCAGGCCTCTGGGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGTT-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TA------------------CC----------TTAA----CTGATGAC AAT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTC------------------ ----------CTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AT-CCCCACTCC-TGCCCACCAGAGAACAACCC CCC-TTT----------TTCCTTTACCTACCCA-AATCCTATAA-----------AATG- GCCCCACCC-C-T-ATCTTCTTTCACTGGCTCTCTTTTCGGACTCAGCCCACCTGTACCC AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GATGGTCT CTTCACATGGACGCGAGTGA--------- >LTR7d2_chr9_69404587_69410267_3463_ZNF534_k27ac_weakenh_NANOG_C_7down___chr9_6940990869410267___1359 -----------------------------------------------------CATATCC CCTGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCT-------------------------- ------------------GATTCCT---------GAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTCTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCTGGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CTCTACTCC-TGCCCGCCAGAGAACAACCT TCC-TTT----------CTCCTTTACCTACCTA-AATCCTATAA-----------AACG- GCCCCACCC-C---ATCTCCTTTCGCTGACT--CTTTTCGGACTCAGCCGGCCTGCACCC AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGCGAGTG---------- >LTR7d2_chr2_223188780_223195505_3334_ZNF534_ZNF90_KAP1_EncodeRepressed_GRO5of7_GRO6of7_GRO7of7_C_7down___chr2_223195102223195505___1401 TGTCAGGCCTCTGAGCCTAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCATG AACACATCCAGA------------------------------------------------ -----------------------------TGGCT-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATAAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCGTCCTGGCTCAA--AAGCTCCCTTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CTCCACTCC-TGCCCACCAGAGAACAACCC CCC-TTT----------TTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCTTTCGCTGACTCTCTTTTTGGACTCAGCCCGCCTACACCC AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGATGCGAGTG---------- >LTR7d1_chr4_134012212_134018380_1805_ZNF534_KAP1_EncodeTxn_NANOG_GRO3of7_7down____chr4_134012212134012620____1397 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACACTCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------AGTTCCTGACTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCT-CCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-ACCCACTCC-TGCCCGCCAGAGAACAGCCC CCC-TTT----------TTCCTTTACCTGCCCA-AGTCCTGTAA-----------AACG- GTCCCACC--C-T-ATCTCCCTTCGCTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACATGCATGA--------- >LTR7d2_chr3_78221983_78222362_h3k27ac_EncodeTxn_SOLO_7down____chr3_7822198378222362____1378 -GTCAGACCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGTGC- ---------AGA------------------------------------------------ -----------------------------TGGCT-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACCAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TCAA----CTAATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTTCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACCACCC CCC-TTT----------TTCCTTTACCTAACCA-AATCCTGTAA-----------AACA- GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTTGGACTCAGCCCGCCTGCA--- -----------------AACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGTGAGTGA--------- >LTR7d2_chr3_72023126_72028900_3184_ZNF534_ZNF90_KAP1_EncodeRepressed_7down____chr3_7202312672023532____1396 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAATGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--GAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAAC---CC CCC-TTT----------TTCCTTTACCTACCCA-AATCCTACAA-----------AATG- GCCCCACCC-C-C-ATCTCCCTTCGCTGACTC--TTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCTTTATTGCTCACAGAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGTGAGTGA--------- >LTR7d2_chr11_127768919_127774895_3312_1_EncodeRepressed_GRO3of7_C_7down___chr11_127774501127774895___1394 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCAAG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAG---TGTAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAG--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCATTCC-TGCCCGCCAGAGAAC---CC CCC-TTT----------TTCCTTTACCTACCAA-AATCCTATAA-----------AATG- GCCCCA-CC-C-C-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--ATT--GGCGGTCT CTTCACACAGACATGAGTG---------- >LTR7d2_chr13_7927408279279821_4787_ZNF534_ZNF90_KAP1_EncodeRepressed_GRO2of7__chr13_7927408279274491____1409 --TCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCATCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------CTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACCTTGTG-------------- ---------------------------AC-TCCCACT-C-TGCCTGCCAGAGAACAACCC CTC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACA- GCCCCACCC-C-T-ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGTTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGACGCGAGTGA--------- >LTR7d2_chr1_79488608_79494123_3448_ZNF534_k4me3_weakenh_C_7down___chr1_7949370979494123___1400 TGTCAGGCCTCTGAGCCCAGG-----------------------CTAAGCCATCATGTCC CCTGTGAC---------------------------------------------CTGCATG TACACATCCAGA------------------------------------------------ -----------------------------CGGCT-------------------------- ------------------GGTTCCTGCCTTAACTGCT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGTCCTGTTCC------------------- ------------TG------------------CC----------TCAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TAACTTGTA-------------- ---------------------------AC-CCCCACT-C-TGCCCGCCAGAGAACAACCC CCC-TTTGACT-----------TTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCCCTGACTCTCTTTTTGGACCCAGCACACCTGCACCC AGGGGA-----AA--TAAACAGCTTTATTGCTCACAGAAAGCCTG--TTT--GGTGGTCT CTTCACACAGACACGAGTG---------- >LTR7d2_chr7_93639935_93645552_3199_transcribed_ZNF534_k4me3_TSS_NANOG_GRO1of7_7down____chr7_9363993593640344____1399 -GTCAGGCCTCTGAGCCCAAG-----------------------CTATGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACA TACACATCCAGA------------------------------------------------ -----------------------------TGGTC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCC-GTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATTCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACT-C-TGCCCGCCAGAGAACAACCC C-C-CTT---------TTTCCTTTACCTACCCA-AATCCTATAA-----------AATG- GCCCCACCC-C-T-ATGTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGTTTTATTGCTGACTCAAAGCCTG--TTT--GGTGGTCT CTTCACACGAACGCGAGTGA--------- >LTR7d2_chr5_1641996916425426_3925_ZNF534_k4me3_TSSflanking_NANOG_wangmod_GRO2of7__chr5_1641996916420378____1409 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCTTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTACTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTA-------------- ---------------------------AC-CCCCACT-C-TGCCTGCCAGAGAACAACCC C-C-TTTGACTGTAATTTTCCTTTACCTACTCA-AATCCTATCA-----------AACG- GCCCCACCC-C-T-ATCGCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGAGTGA--------- >LTR7d2_chr7_101935024_101935434_h3k27ac_enh_SOLO_NANOG_7down____chr7_101935024101935434____1410 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTTACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACT-C-TGCCCGCCAGAGAACAAACC CCT-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C-T-TTCTCCCTTCGCTGACTCTCTTTTCAGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT TTTCACACGGACGTGAGTGA--------- >LTR7d1_chr3_186657774_186663690_1570_ZNF534_KAP1_EncodeTxn_GRO1of7_7down____chr3_186657774186658170____1396 -GTCAGGCCTCTGAGCCTAAG-----------------------CTAAGCCATCATATCC CCTGAGAC---------------------------------------------CTGCACA TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGGCTTAACTGAT----------------------- ---GACATTCCACTACAAAAGAAATGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATAGC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCTTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCTACTCC-TGCCTGCCAGAGAACAACCC CTC-T----------TTTTCCTTTACGTACCTA-AATCCTATAA-----------AATG- GCCCCACCC-C---ATCTCCCTTCACTGACTC--TTTTTGGACTCAGCCCACCTGCACCC AGGTG-------A--TTAAAAGATTTATTGCTCAGACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACACACATGA--------- >LTR7d1_chr1_239101236_239107062_3312_ZNF534_EncodeRepressed_GRO1of7_7down____chr1_239101236239101619____1383 -GTCAGGCCTCTGAGCCTAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTAAATG TACACATGTAGG------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------TGTTCCTGCCTTAACTGAT----------------------- ---GACATTCTACCACAAAAGAAATGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGGC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTTC----------------- -----------TGGCTCAA--AAGCCCCTTTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CTCTACTCC-TGCCTGCCAGAGAACAACCT CCC-T----------TTTTCCTTTACTTACCTA-AATCCTATAA-----------AACG- GTCCTACCC-C---ATCTCCTTTCGCTGACTC--TTTTCGGACTCAGCTTGCCTGCACCT AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTC- ----ACACAGACACACATGA--------- >LTR7d1_chr9_7818069478186819_3369_ZNF534_ZNF90_EncodeTxn_GRO2of7__chr9_7818069478181102____1407 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACA TACACATCCAGA------------------------------------------------ -----------------------------TGGCT-------------------------- ------------------GGTTCCTGCCTTAACAGAT----------------------- ---GACATTCCACCACAAAAGACATGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCTGAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTA-------------- ---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAACCC TCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATTTTATAA-----------AATG- GCCCTACCC-C---ATCTCCCTTCTCTGACTC--TTTTCGGACTCAGCCCACCTGCACCC AGGTG-------A--TTAAAAGCTATATTGTTCACACAAAGCCTG--TTT--GGTAGTCT CTTCACACAGACACACATGA--------- >LTR7d1_chr18_42991497_42996809_3227_1_EncodeRepressed_7down____chr18_4299149742991957____1408 -GTCATGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCATG TACACATTCAAA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------TGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACGAAAGAAATGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGACTCAA--AAGCTCCCGTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAACCC CCC-TTTGACTGTAATTTTCCTCTACCTACCCA-AATCTTATAA-----------AATG- GCCCCACCC-C---ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCGGCC AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--TGTGGTCT CTTCACACAGATGCACATGA--------- >LTR7d1_chr6_137060268_137067121_3083_ZNF534_EncodeTxn_GRO4of7_C_7down___chr6_137066710137067121___1408 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACA TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------AGCTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACGAAAGAAATGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATAAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCTTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGT--------------- ---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAACCC CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTAGGACTCAGCCCACCTGCACCC AGGTG-------A--TTAAAAGCTTTATTGCACACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCAAGTG---------- >LTR7d2_chr8_112195874_112201403_4669_ZNF534_ZNF90_KAP1_EncodeRepressed_NANOG_7down____chr8_112195874112196275____1401 -GTCAGGTCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAATGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC TTT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATTCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAACCC TCC-T----------TTTTCCTTTACCTACCCA-AATCCTATAA-----------AACA- GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCTCCC AGGTG-------A--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--CATGGTCT CTTCACACGAACACAAGTGA--------- >LTR7d1_chr12_25163213_25169508_3107_ZNF534_EncodeTxn_GRO3of7_7down____chr12_2516321325163617____1403 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCTAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCGCCACAAAAAAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTTAA--AAGCTCTCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAACCC CTC-TTTGACGGTGATTTTCCTTTACCTACGCA-AATCTTATAA-----------AACG- GCCCTACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCATATGGACG---------------- >LTR7d1_chr6_62791671_62797450_2959_ZNF534_KAP1_EncodeRepressed_GRO1of7_7down____chr6_6279167162792025____1354 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGTC---------------------------------------------CTGCACG TACACATCTAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GAC------------------------------------------------------ ------------------------------------------------------------ ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTATCCTGG-------------- ----CTCTTCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAACCC ACC-TTTGACTGTAATTTTCCTTTACCTACACA-AATCTTATAA-----------AATG- GCGCCACCC-C-T-ATCGCCCTTTGCT----CTCTTTTCAGACTCAGCCCACCTGCACCC AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG---TT--GGTGGGCT CTTCACATGGACACGAGTGA--------- >LTR7d1_chr5_5076271_5076678_h3k27ac_EncodeRepressed_SOLO_NANOG_C_7down___chr5_50762715076678___1407 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACACCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAATGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATGCTGGCTCAA--AAG--CCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAACTC CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG- GCCCCACCC-A-T-ATCTCCCTTCGTTGACTCT--TTTCAGACTCAGCCCGCCTGCATCC AGGTG-------A--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGACGTGTGTG---------- >LTR7d1_chr4_20629771_20635978_4427_ZNF534_ZNF90_KAP1_EncodeRepressed_NANOG_C_7down___chr4_2063556920635978___1409 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTAAT----------------------- ---GACATTCCACCACAAAAGAAATGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACCCC-TGCCTGCCAGAGAACAACCC GGC-TTTGACTGTAATTTTCCTTTACCTATCCA-AATCTTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GATGGTCT CTTCACATGGATGTGTATG---------- >LTR7d2_chr3_890694_896413_4680_ZNF534_EncodeTxn_GRO4of7_C_7down___chr3_896002896413___1401 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCATG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------AGATCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TA------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGTTTCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGTCTGCCAGAGAACAACCC CTC-T----------TTTTCCTTTACCTACCCA-AATCTTATAA-----------AATG- GCCCCACCC-C-T-ATCTCTCTTCACTGACTCTCTTTTTGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--CTT--GGTGGTCT TTTCACATGGATGCACATG---------- >LTR7d2_chr8_8168723_8183856_2383_ZNF534_KAP1_EncodeRepressed_GRO3of7_7down____chr8_81687238169074____1350 -GTCAGTCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCT CCTGTGAC---------------------------------------------CTGCATG TACATATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACAT---------------------------------------------------- ------------------------------------------------------------ --T--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTTG-------------- ----CTCATCCTGGCTCCA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------GC-CCCCACTCC-TGCCTGCCAGAGAACAACCC CCC-T----------TTTTCCTTTACCTACCCA-AATCCTATAA-----------AATT- GCCCCACCC-C-T-ATCTCCCTTCACTGACTCTCTTTTTGGACTCAGCCCACCTGTACCC AGGTGA-----AA--TAAACAGCTTTACTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGATGCATGTGA--------- >LTR7d2_chr8_12481807_12496943_2385_ZNF534_KAP1_EncodeRepressed_chimeric_GRO3of7_C_7down___chr8_1249659212496943___1350 TGTCAGTCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCT CCTGTGAC---------------------------------------------CTGCATG TACATATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACAT---------------------------------------------------- ------------------------------------------------------------ --T--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTTG-------------- ----CTCATCCTGGCTCCA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------GC-CCCCACTCC-TGCCTGCCAGAGAACAACCC CCC-T----------TTTTCCTTTACCTACCCA-AATCCTATAA-----------AATT- GCCCCACCC-C-T-ATCTCCCTTCACTGACTCTCTTTTTGGACTCAGCCCACCTGTACCC AGGTGA-----AA--TAAACAGCTTTACTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGATGCATGTG---------- >LTR7d2_chr3_176061364_176066982_4516_ZNF534_EncodeTxn_GRO4of7_7down____chr3_176061364176061752____1388 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAACCT CCC-T----------TTTTCCTTTACCTACCCA-AATCCTATAA-----------AATG- GCCCCACCC-C-T-ATCTCCCTTCACTGAC-------------TCAGCCTGCCTGAACCC AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGCAAGTGA--------- >LTR7d2_chr21_16914128_16919898_3219_ZNF534_KAP1_EncodeRepressed_7down____chr21_1691412816914528____1400 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCT-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACCAAAGAAATGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGGC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AATCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-AGCCTGCCAGAGAACAATCC CCC-T----------TTTTCCTTTACCTACCCA-AATCCTATAA-----------AAGG- GCCCCACCC-C---ATCTCCCTTCCTTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--CTT--GGAGGTCT CTTCACACGGACGCGCATGA--------- >LTR7d2_chr4_52834802_52835186_h3k27ac_enh_SOLO_FOXP1_NANOG_44108_SMAD11_TCF4_7down____chr4_5283480252835186____1383 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGG------------------------------------------------ -----------------------------TGGCT-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCATCACAAAAGAAATGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGGC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGTCTCAA--AAGCTCCCCTGC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CA--------------------- ------------------------------CCCCACTCC-TGCCTGCCAGAGAACAACCC TCC-T----------TTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C---ATCTCCCT--------TCACTTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCTTTATTGCTCGCACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGAGTGA--------- >LTR7d2_chr4_166520700_166526430_3325_ZNF534_EncodeRepressed_7down____chr4_166520700166521091____1391 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CTTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAATGAAAATAGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGGC GTT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CTCCACTCC-TGCCTGCCAGAGAACAACCC CCC-T----------TTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C---ATCTCCCTTCACTAACT--CTTTTCAGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGTTTTATTGCTCACACAAAGCCTG--TTT--GCTGGTCT CTTCACAAGGATG---------------- >LTR7d2_chr2_179051593_179057323_3319_1_EncodeTxn_GRO3of7_C_7down___chr2_179056938179057323___1385 TGTCAGACCTCTGAGCCTAAG-----------------------CTAAGCTATCACATCC CCTGTGAC---------------------------------------------CTGCACA TACATATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------AGTTCCTGCCTTAACTAAT----------------------- ---GACATTCCACCACAAAAGA-----AAATAGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGGC ATC--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGACTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAAC--CCC CCC-T----------TTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C---ATCTCCCTTCATTGACT--CTTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGATG---------------- >LTR7d2_chr2_79211346_79217707_2946_ZNF534_KAP1_EncodeRepressed_GRO4of7_C_7down___chr2_7921730979217707___1398 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATTC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGACT-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACTACAAAAGAAATGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CT------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ -------------CC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------GC-CCCCACTCC-TGCCCGCCAGAGAAC---CC CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG- GCCCCACCT-C-T-ATCTCCCTTCACTGACTCTCTTTTCAGACTCAGCCCCCCTGCACCC AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACTCACATG---------- >LTR7d1_chr2_22970193_22970590_enh_SOLO_NANOG_44108_C_7down___chr2_2297019322970590___1396 TGTCAGGCCTCTGAGCCCAAG------------------------TAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCATT TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGTT----------------------- ---GGCATTCCACCACAAAATAAATGAAAATGGCCCGTTCC------------------- ------------TG------------------AC----------TTAA----CTGATGGC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATGCTGGCTTAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCCCTCC-TGCCTGCCAGAGAACAACCC CCC-TT----------TTTCCTTTACCTACCCA-AATCCTATCA-----------AATG- GCCCCACCC---T-ATCTCCCTTTGCTGACTC--TTTTTGGACTCAGCCTGCCTGCACCC AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACAGGGACGCGTGTG---------- >LTR7d1_chr11_94345725_94351415_4087_ZNF90_KAP1_EncodeTxn_7down____chr11_9434572594346118____1393 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCATG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAATGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGGC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCATTCC-TGCCCGCCAGAGAACAACCC CCC-TT----------TTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GTCCCACCC---T-ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAACCTGCCTGCACCC AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--CTT--GGTGGTCT CTTCAAATGGAC----GTG---------- >LTR7d1_chr7_125917557_125924110_3594_ZNF534_KAP1_k27ac_EncodeTxn_GRO3of7_7down____chr7_125917557125917965____1407 -GCCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC AAT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATGCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCAC-CC-TGCCCGCCAGAGAACAACCC CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AATG- GCCCCACCC---C-ATCTCCCTTTGCTGACTCTCTTTTTGGATTTAGCCAGCCTGCACCC AGGTG-------A--TTGAAAGCCTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATCGACGCTCATGA--------- >LTR7d1_chr8_56439026_56439435_EncodeRepressed_SOLO_7down____chr8_5643902656439435____1409 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------AGTTCCTGCTTTAACTGAT----------------------- ---GACATTCTACCACAAAAGAAGTGAAAATGGCCTGTTCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCGTCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACACC-TGCCCGCCAGAGAACAACCC CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AATG- GCCTCACCC-T-T-ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGATG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACCGACGCGCATGA--------- >LTR7d1_chr3_153226150_153232523_3380_ZNF534_EncodeRepressed_GRO7of7_C_7down___chr3_153232111153232523___1409 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAGAAGAAGTGAAAATGGCCTGTTCG------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACACC-TGCCCGCCAGAGAACAACCC CCC-TTTGACTATAACTTTCCTTTACCTACCCA-AATCTTATAA-----------AATG- GCCCCACCC-A-T-GTCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTG-------A--TAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATG---------- >LTR7d1_chr14_86731586_86737060_2791_1_EncodeTxn_NANOG_7down____chr14_8673158686731996____1409 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAACCC TCC-TTTGACTGTAATTTTCCTTTATCTACCCA-AATCTTATAA-----------AATG- GCCCCACCC-T-T-ATCTCCCTTTGCTGACTCTCTTTTCGGATTCAGCCCACCTGCACCC AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACAGGGACGCGCATGA--------- >LTR7d1_chr3_141204901_141211729_3245_ZNF534_EncodeTxn_GRO3of7_7down____chr3_141204901141205306____1405 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGGAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAGTTCCTTCT---GG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAACCC -CC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTCGGACTTAGCCCACCTGCACCC AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CCTCACATGGACAAGCACGA--------- >LTR7d1_chr13_48056344_48062289_3125_ZNF534_ZNF90_KAP1_EncodeTxn_NANOG_7down____chr13_4805634448056764____1407 -GTCAGGCTTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCGCAAAAGAAATGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAAGCC CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATC--ATAA-----------AATG- GCCCCACCC-C-T-ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTG-------A--TTAAAAGCTTTATTGCGCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGACGTGCATGA--------- >LTR7d1_chr13_77933223_77939379_1838_ZNF534_ZNF90_KAP1_EncodeTxn_GRO3of7_C_7down___chr13_7793898077939379___1399 TGTCAGGCCTTTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAATGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCA----------A--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCTGCCAGAGGACAACCC CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AATG- GCCCCACCC-C-T-ATCTCCCTTTACTGACTCTCTTTCTGGACTCAGCCCACCTGCACCC AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAACCCTG--TTT--GGTGGTCT CTTCACACTGACGTGCATG---------- >LTR7d1_chr13_81866095_81872431_2976_ZNF534_ZNF90_KAP1_EncodeRepressed_GRO3of7_7down____chr13_8186609581866504____1409 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------ATGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCT-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCTACCACAAAAGAAATGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ACT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTTC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAACCC CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AATG- GCCCCAACC-C-T-ATCTCCCTTCACTGACTCTCTTTTTGGACTCAGCCCACCTGCACCC AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGATGTGCATGA--------- >LTR7d1_chr5_15702738_15703151_weakenh_SOLO_C_7down___chr5_1570273815703151___1409 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACA TACACATCCAGA------------------------------------------------ -----------------------------TGGCT-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAACGAAAATGGCCTGTTAC------------------- ------------TG------------------CC----------TTAA----CTGATGAC GTT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAG--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAACCC CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTGGCTGACTCTCTTTTCGGACTCAGCTCGCCTGCACCC AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGCGCATG---------- >LTR7d1_chr4_63984936_63985345_EncodeTxn_SOLO_C_7down___chr4_6398493663985345___1409 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACA TACACATCCAGA------------------------------------------------ -----------------------------TGGCG-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAATGAAAACGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATTCTGGCTCAA--AAGCTCCCCTAA--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------AAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAACCC CGC-TTTGACTGTAATTTTCCTTTATCTACCCA-AATCTTATAA-----------AACG- GCCCCACCC-C-T-ACCTCCCTTAGCTGACTCTCTTTTCGGACTCAGCCCGCTTGCACCC AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGACGCGCATG---------- >LTR7d1_chr4_154918329_154924563_2955_ZNF534_KAP1_EncodeTxn_GRO3of7_C_7down___chr4_154924155154924563___1408 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACA TACACATCCAGA------------------------------------------------ -----------------------------TGGCT-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTTCACCACAAAAGAAATGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAACCC CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AATG- GCCCCACCC-C---ATCTCCCTACGCTGACTCTCTTTTCGGACTCAGCACGCCTGCACCC AGATG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACATGCTTG---------- >LTR7d1_chrX_96624025_96630448_3323_ZNF534_KAP1_EncodeRepressed_GRO3of7_7down____chrX_9662402596624427____1402 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGTCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGACT-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCTACCACAAAAGAAATGAAAATGGCCTATTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAT--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAA----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAACCC CTT-T--GACTGTAATTTTCCTTTACCTACCCA-AATCCTGTAA-----------AACG- GCCCCACCC-C---ATCTCCCTCTGCTGACTCT----TCGGACTCAGTCTGCCTGCACCC AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGACGCGCATGA--------- >LTR7d1_chrX_99158722_99165186_3398_ZNF534_EncodeRepressed_C_7down___chrX_9916478799165186___1399 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACA TACACATCCAGA------------------------------------------------ -----------------------------TGGCT-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAAGGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GTG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAATCC CCC-T----------TTTTCTTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGTCTGCCTGAACCC AGGTG-------A--TGAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGATGCGCATG---------- >LTR7d1_chr2_231569533_231569891_EncodeRepressed_SOLO_7down____chr2_231569533231569891____1347 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CATGTGAC---------------------------------------------CTGCACA TACACATCCAGA------------------------------------------------ -----------------------------AGGCC-------------------------- ------------------GGTTTGTGCCTTAACTGAT----------------------- ---GACAT---------------------------------------------------- ------------------------------------------------------------ --T--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACCTTGTG-------------- ---------------------------AC-CCCCAC-CC-TGCCCGCCAGAGAACAACCC CCC-T----------TTTTCCTGTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C---ATCTCCCTTCGATGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTG-------A--TTAAAAGCTTTATCGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATGA--------- >LTR7d1_chr8_75217076_75217474_h3k27ac_enh_SOLO_NANOG_C_7down___chr8_7521707675217474___1398 TGTCAGGCCTCTGGGCCCAAG-----------------------CTAAGTCATCATATCC CCTGTGAC---------------------------------------------CTGCACG CACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTTCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CCGACGAG ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACCTTGTG-------------- ---------------------------AC-CCCAACTCC-TGCCCGCCAGCGAACAGCCC CCC-T----------TTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C---ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCTGCCTGCACTC AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGTGCATG---------- >LTR7d1_chr11_23887264_23892921_4440_ZNF534_EncodeRepressed_GRO4of7_C_7down___chr11_2389252623892921___1395 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ACT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCACCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAAC---CC CCC-T----------TTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACAC-C---ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCTCGCCTATACCC AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAACCTG--TTT--GGTGGTCT GTTCACATGGACGTTCATG---------- >LTR7d1_chr2_47698281_47698679_h3k27ac_enh_SOLO_NANOG_C_7down___chr2_4769828147698679___1398 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCATATCC CCTGAGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGCTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCCCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACCTTGTG-------------- ---------------------------AC-CCCCACTCC-AGCCCGCCAGAGAACAACCC CCC-T----------TTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C---ATCTCCCTTCGCTGACTGTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTA-------A--TTAAAAGCATTATTGCTCACACAAAGCCTG--TTT--AGTGGTCT CTTCACACGGACGTGCATG---------- >LTR7d1_chr6_76562300_76562692_h3k27ac_TSS_SOLO_FOXP1_NANOG_SOX2_7down____chr6_7656230076562692____1392 ---CAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCTTATCC CCTGTGAC---------------------------------------------CTGCACA TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCTACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAACCC CCC-T----------TTTTCCTTTACCTACCCA-AATCCTATAA-----------AAAG- GCCCCACCC-C---ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACACAC------------- >LTR7d1_chr8_131740755_131746622_3238_ZNF534_EncodeTxn_7down____chr8_131740755131741151____1395 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGACATCATATCC CCTGTGAC---------------------------------------------CTGCACA TACACATCCACA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTTA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC------------GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAACCC CCC-T----------TTCTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCGCTGACT--CTTTTCAGACTCAGCCTGCCTGCACCC AGTTG-------A--TTAAAAGCTTTATTACTCACACAAAGCCTG--TTT--AGTGGTCT CTTCACACGGACACACATGA--------- >LTR7d1_chr8_131310175_131315847_4355_transcribed_ZNF534_k4me3_EncodeTxn_NANOG_SMAD11_wanghigh_GRO1of7_7down____chr8_131310175131310564____1389 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------ATGCACA TACACATCCAGA------------------------------------------------ -----------------------------TGGCT-------------------------- ------------------GGTTCCTGCCTTAAGTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCA----------A--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAACCC CCC-T----------TTTTCCTTTACCTACCCA-AATCCTATAA-----------AAGG- GCCACACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCAGACTCAGCCTGCCTGCACCC AGGTG-------A--TTAAAAACTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACAGGGACATGCATGA--------- >LTR7d1_chr6_141452825_141460680_4854_ZNF534_EncodeRepressed_NANOG_GRO1of7_7down____chr6_141452825141453224____1399 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATTATATCC CCTGTGAC---------------------------------------------CTGCACA TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CT----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AGGCTACCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAACCC GCC-T----------TTTTCCTTTACCTACCCA-AATCCTGTAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTGGCTGACTATCTTTTCGGACTCAGCCTGCCTGCACCC AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGATGCACATGA--------- >LTR7d1_chr9_126074450_126080414_3478_ZNF534_ZNF90_KAP1_EncodeTxn_GRO4of7_C_7down___chr9_126080018126080414___1395 TGTCAGACCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACA TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTTCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAAAA----CC CCC-T----------TTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTG-------A--TTAATATCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACACGCATG---------- >LTR7d1_chr21_5601124_5601526_SOLO_C_7down___chr21_56011245601526___1399 TGTCAGGCCTCTGAGCCTAAG-----------------------CTAAGCCATCGTACCT TCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCTTGTTTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCGAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAATCC CCC-T----------TTTTCCTTTACCTACCCA-AATCCTATAA-----------AATG- GCCCCATCC-C-T-ATCTACGTTTGCTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC AGGTG-------A--TTAAAAGCTTTATTGCTTACACGAAGCCTG--TTT--GGTGGTCT CTTCACACGGACCCCCATG---------- >LTR7d1_chr21_7096350_7096752_SOLO_C_7down___chr21_70963507096752___1399 TGTCAGGCCTCTGAGCCTAAG-----------------------CTAAGCCATCGTACCT TCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCTTGTTTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCGAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAATCC CCC-T----------TTTTCCTTTACCTACCCA-AATCCTATAA-----------AATG- GCCCCATCC-C-T-ATCTACGTTTGCTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC AGGTG-------A--TTAAAAGCTTTATTGCTTACACGAAGCCTG--TTT--GGTGGTCT CTTCACACGGACCCCCATG---------- >LTR7d1_chr21_7478128_7478530_SOLO_C_7down___chr21_74781287478530___1399 TGTCAGGCCTCTGAGCCTAAG-----------------------CTAAGCCATCGTACCT TCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCTTGTTTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCGAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAATCC CCC-T----------TTTTCCTTTACCTACCCA-AATCCTATAA-----------AATG- GCCCCATCC-C-T-ATCTACGTTTGCTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC AGGTG-------A--TTAAAAGCTTTATTGCTTACACGAAGCCTG--TTT--GGTGGTCT CTTCACACGGACCCCCATG---------- >LTR7d1_chr21_6219444_6219846_SOLO_7down____chr21_62194446219846____1399 -GTCAGGCCTCTGAGCCTAAG-----------------------CTAAGCCATCGTACCT TCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCTTGTTTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCGAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAATCC CCC-T----------TTTTCCTTTACCTACCCA-AATCCTATAA-----------AATG- GCCCCATCC-C-T-ATCTACGTTTGCTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC AGGTG-------A--TTAAAAGCTTTATTGCTTACACGAAGCCTG--TTT--GGTGGTCT CTTCACACGGACCCCCATGA--------- >LTR7d1_chr21_7659875_7660277_SOLO_7down____chr21_76598757660277____1399 -GTCAGGCCTCTGAGCCTAAG-----------------------CTAAGCCATCGTACCT TCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCTTGTTTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCGAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAATCC CCC-T----------TTTTCCTTTACCTACCCA-AATCCTATAA-----------AATG- GCCCCATCC-C-T-ATCTACGTTTGCTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC AGGTG-------A--TTAAAAGCTTTATTGCTTACACGAAGCCTG--TTT--GGTGGTCT CTTCACACGGACCCCCATGA--------- >LTR7d1_chr3_190144600_190150202_3267_ZNF534_ZNF90_KAP1_EncodeTxn_NANOG_7down____chr3_190144600190145007____1398 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGTCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACCTTGTG-------------- ---------------------------AT-CCCCACTCC-TGCCCACCAGAAAACAACCC CCT-T----------TTTTCCTTTATCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C---ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC CGGTG-------A--TTAAAAGCTTTATTGCTTACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGACATGCATGA--------- >LTR7d1_chr11_94641601_94647311_4553_transcribed_ZNF534_k4me3_EncodeTxn_NANOG_GRO1of7_7down____chr11_9464160194642009____1399 -GTCAGGCCTCTGAGCCCAAG-----------------------CTGAGCCATCATGTCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGTG-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAAAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAACCC CCT-T----------TTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG- GCCCCACCC-C-T-ATCTGCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCGTGCACCC AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTTACACAGACGCACATGA--------- >LTR7d1_chr1_241433889_241439882_3369_ZNF534_ZNF90_KAP1_EncodeRepressed_GRO3of7_7down____chr1_241433889241434289____1399 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGTCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAA----TACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAGCCACCC CCC-T----------TTTTCCTTTACCTACCCA-AGTCCTATAA-----------AACA- GCGCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACTTGCACCC AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGACCCACATGA--------- >LTR7d1_chr5_66936361_66936718_weakenh_SOLO_C_7down___chr5_6693636166936718___1348 TGTCAGGCCTCTGAGCCTAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCATG TACACATCCAGA------------------------------------------------ -----------------------------TGGAC-------------------------- ------------------TGTTCCTGCCT------------------------------- ------------------------------------------------------------ ---------------------------------------------TAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACCTTGTG-------------- ---------------------------AC-CCGTACTCC-TGCCCGTCAGAGAACAACCC CCT-T----------TTTTCCTTTACCTACCCA-AATCTTATAA-----------AATG- GCCCCACCC-C-T-ATCTCCCTTCCCTGACTCTCTTTTCGGACTTAGCCCGCCTGCACCC AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTC--AGTAGTCT CTTCACAGGGACGTACATG---------- >LTR7d1_chr2_172548349_172548758_h3k27ac_EncodeRepressed_SOLO_7down____chr2_172548349172548758____1358 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCAAG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCT------------------------------- ------------------------------------------------------------ ---------------------------------------------TAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAA--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACCCTGTG-------------- ---------------------------AA-CCCCACTCC-TGCCAATCAGAGAACAACCC CCC-T----------TTTTACTTTACCTACCCA-AATCTTATAA-----------AATG- GCCCCATCC-T-T-ATATCCCTTTGCTGACTCTCCTTTCGGACTTAGCCCGCCTGCACCC AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGATGTGAGTGA--------- >LTR7d1_chr6_145103186_145108857_4564_ZNF534_KAP1_EncodeTxn_GRO5of7_GRO6of7_GRO7of7_C_7down___chr6_145108459145108857___1398 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCT-------------------------- ------------------GGTTCCTGCCTTAACTAAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTCTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACCTGGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAACCC CCC-T----------TTTTCCTTTACCTACCCA-AATCCTATAA-----------AATG- GCCCCACCC-C---ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCGCACGGACGTGCATG---------- >LTR7d1_chr2_38080802_38086512_4488_ZNF534_k4me3_weakenh_NANOG_SMAD11_GRO3of7_C_7down___chr2_3808611538086512___1397 TGTTAGGCCCCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG CACACATCCAGA------------------------------------------------ -----------------------------TCGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACCTTGTG-------------- ---------------------------AC-TCCCACTCC-TGCCTGCCAGAGAACAACCC CCC-T----------TTTTCCTTTACCTACCCA-AATCATATAA-----------AACG- GCCCCACC----T-GTCTCCCTTGGCTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GATGGTCT CTTCACACGGACATGCATG---------- >LTR7d1_chr2_67331517_67337601_3465_transcribed_ZNF534_k4me3_TSS_wanghigh_GRO1of7_7down____chr2_6733151767331914____1397 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG CACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAATTGAT----------------------- ---GACATTCCACCACAAAAGAAATGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGACATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAACCC CCC-T----------TTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCACTGACTCT--TTTTGGACTCAGCCCACCTGCACCC AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCGCACAGAAGTGCATGA--------- >LTR7d1_chr12_29275067_29275466_EncodeTxn_SOLO_C_7down___chr12_2927506729275466___1399 TGTCAGGCCTCTGACCCCAAG-----------------------CTAGGCCATCATATCC CCAGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATC--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAT--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAACCC ACC-T----------TTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C-T-GTCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGATG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGCGCATG---------- >LTR7d1_chr6_169674740_169675135_EncodeRepressed_SOLO_C_7down___chr6_169674740169675135___1395 TGTCAGGCCTCTGAGCCCAAG-----------------------CTCGGCCATCATATCC CCTGTGAC---------------------------------------------CTGCATG TACACATCCAGA------------------------------------------------ -----------------------------TGGCT-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------CG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACTTTGTG-------------- ---------------------------AC-CCCTACTCC-TGCCCGCCAGAGAACAACTC CCC-T----------TTTTCCTTTACCTACCCA-AATCCTATAA-----------AA--- -CCCCACCC-C---ATTGCCCTTTGCTAACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGCGCATG---------- >LTR7d1_chrX_16044720_16050414_4804_ZNF534_ZNF90_KAP1_EncodeTxn_chimeric_GRO3of7_C_7down___chrX_1605001616050414___1398 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAT---------------------------------------------TTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TCGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATAGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAACCC CCC-T----------TTTTCCTTTACCTACCCA-AATCCTATAA-----------AATG- GCCCCAACC-C---ATCTCCCTTTGCTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC AGGTG-------A--TTAAAAGCTTTATTATTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGCACATG---------- >LTR7d2_chr2_170977458_170983386_4819_ZNF534_KAP1_EncodeTxn_NANOG_GRO3of7_C_7down___chr2_170982986170983386___1399 TGTCAGGCCTCTGAGCCCAAG-----------------------CTATGCCATCATATCC CCGGTGAC---------------------------------------------CTGCATG TACACATCCAGA------------------------------------------------ -----------------------------TGGCT-------------------------- ------------------GGTTCCAGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTTA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAACCC CCC-T----------TTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTG-------A--TTAAACGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGAATG---------- >LTR7d1_chr5_25445823_25446221_h3k4me3_TSS_SOLO_44108_C_7down___chr5_2544582325446221___1398 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAACCC CCC-T----------TTTTCCTTTACCTACCCA-AATCCTATAA-----------AACA- GCCCCATCC---T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATG---------- >LTR7d1_chr4_128640894_128646609_3062_ZNF534_KAP1_EncodeTxn_NANOG_GRO3of7_C_7down___chr4_128646200128646609___1398 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCTATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCT-------------------------- ------------------GGTTCCTACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAACTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-TCCCACTCC-TGCCCGCCAGAGAATAACCC CCC-T----------TTTTCCTTTACCTACCCA-AATCTTATAA-----------AACA- GCCCCACCC-C-T-ATC-CCCTTTGCTGACTCTCTCTTCGGACTCAGCCCGCCTGCACCC AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATG---------- >LTR7d2_chr4_170116430_170122158_3295_ZNF534_ZNF90_KAP1_TSSflanking_7down____chr4_170116430170116838____1398 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATGTCT CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGG------------------------------------------------ -----------------------------TGGCT-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GGCATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGACTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CACTACT-C-TGCTTGCCAGAGAATGACCC CCC-T----------TTTTCCTTTATCTACCCA-AATCTTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTA--TTT--GGTGGTCT CTTCACACGGACGTGCATGA--------- >LTR7d1_chr11_118717034_118731855_2447_ZNF534_ZNF90_KAP1_EncodeTxn_wanghigh_GRO1of7_C_7down___chr11_118731446118731855___1408 -GTCAGGCCTCTGAGCCCAAA-----------------------ATAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---GTCATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GCC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCTTCCTGGCTCAA--AATCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCTACTCC-TGCCTGCCAGAGAATAACCC CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AATG- GCCCCACTC-C-T-ATCTGTCTTTGCTGACTCTGTTTTCGGACTCAGCCCACCTGCACCC AGGTG-------A--TTAGAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTTACATGGACGCACATG---------- >LTR7d1_chr14_84500250_84505973_4521_KAP1_EncodeTxn_NANOG_GRO4of7_C_7down___chr14_8450556584505973___1408 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCACATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCC-ACTCC-TGCCTGCCAGAGAACAACCC CCC-TTTGACTGTAATTTTCCTTTACCTATCCA-AATCTTATAA-----------AATG- GCCCCACCC-C-T-ATCTCTCTTCACTGACTCTCTTTTCAGACTCAGCCTGCCTGCACCC AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGTCTG--TTT--GGTGGTCT CTTTACACGGATGCGCATG---------- >LTR7d1_chr20_23764763_23765176_weakenh_SOLO_NANOG_TCF4_7down____chr20_2376476323765176____1407 -GTCAGGACTCTGAGCCTAAG-----------------------CTAAGCCATCATATCC TCTGTGAC---------------------------------------------TTGCAGG TACACATCCAGA------------------------------------------------ -----------------------------TTGCC-------------------------- ------------------ATTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGAAGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAACCC CCC-TTTGACTGTAATTTTCCTTTACCTACCCT-AATCTTATAA-----------AACA- GCCCCACCC-C---ATCTCTCTTTGCTGACTCT-CTTTCAGACTCAGCCTGTCTGCATCC AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--AGTGGTCT CTTCACACAGACGCACATGA--------- >LTR7d1_chr5_124497035_124502739_4482_ZNF534_KAP1_TSSflanking_NANOG_44108_GRO1of7_7down____chr5_124497035124497443____1408 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGTC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAATAGAAGTGAAAATGTCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTTAAATTCCTTCTCTTGG-------------- ----CTCATCCTGGCTCAC--TAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACT-C-TGCCCGCCAGAGAACAACCC CCC-TTTGACTGTAATTTTCCCTTACCTACCCA-AATCTTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTGTTTTCAGACTCACCCTGCCTGCACCC AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--AGTGTTCT CTTCATACGGATGTGCATGA--------- >LTR7d1_chr12_99715182_99721737_2820_1_k27ac_EncodeTxn_7down____chr12_9971518299715589____1406 -GTCAGGCCTC-GAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTAAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCATAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGACTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAATTC CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCT--TTTCGGACTCAGCCCGCCTGCACCC AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCAG--TTT--GGTGGTCT CTTCACACGGATGCGCATGA--------- >LTR7d1_chr7_49101085_49101493_h3k27ac_enh_SOLO_NANOG_44108_SMAD11_TCF4_7down____chr7_4910108549101493____1408 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATAC CCTGTGAC---------------------------------------------ATGCACT TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTTCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACT-C-TGCCCGCCAGAGAACAACCC CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG- GCTCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCAGCCTGCACCC AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCACATGA--------- >LTR7d1_chr3_3246093932466915_3206_1_EncodeRepressed_GRO2of7__chr3_3246651032466915___1405 TGTCAGGCCTCTAAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAT ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GAGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAAC---CC CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG- GCCCCACCC-C---ATCTTCCTTCGCTGACTCCCTTTTCGGACTCAGCCCGCCTGCACCC AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCACATG---------- >LTR7d1_chr8_30035257_30035666_SOLO_NANOG_7down____chr8_3003525730035666____1408 -GTCAGGCCTCTGAGCCCAAG-----------------------GTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCTGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACACAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACT-C-TGCCCACCAGAGAACAACCC CCC-TTTGACTGTAATTTTCCTTTATCTACCCA-AATCCTACAA-----------AACG- GCTCCACCC-T-T-ATCTCCCTTCGATGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTG-------A--TTAAAAGCTTTATTTCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATGA--------- >LTR7d1_chr14_7112420771130006_3092_ZNF534_ZNF90_KAP1_EncodeTxn_NANOG_GRO2of7__chr14_7112420771124614____1407 -GTCAGGCCTCTGAGCCTAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CCGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACT-C-TGCCCGCCAGAGAACAACCC C-C-TTTGACTGTAATTTTCCTTTATCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCTTTTGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACACGCATGA--------- >LTR7d1_chr7_120885700_120891391_4226_ZNF534_ZNF90_KAP1_EncodeTxn_C_7down___chr7_120890984120891391___1407 TGTCAGGCCTCTGAGCCTAAG-----------------------CTAAGCCATCATA-CC CCTGTGAC---------------------------------------------CTGCACT TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------AGTTCCTGCCATAACTGAT----------------------- ---GACATTGCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACT-C-TGCCCACCAGAGGACAACCC CCC-TTTGACTGTAATTTTCCTTTATCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCTGTTTGCTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATG---------- >LTR7d1_chr1_70588437_70593991_3046_ZNF534_ZNF90_KAP1_EncodeRepressed_NANOG_GRO3of7_7down____chr1_7058843770588793____1356 -GTCAGGCCTCTGAGCCCAAG-----------------------CTGAGCCATCATA-CA CCTGTGAC---------------------------------------------CTGCATA TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACAT---------------------------------------------------- ------------------------------------------------------------ --T--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACT-C-TGCCCGCCAGAGAACAACCC CGC-TTTGACTGTAATTTTCCTTTATCTACCCA-AATCCTATAA-----------AACA- GCCCCACCC-T-T-ATCTCCCTTTGCTGACTCTCTTTTTGGACTCAGCCCACCTGCACCC AGATG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTAACATGGCCGCGCATGA--------- >LTR7d1_chrX_138258661_138264347_3027_ZNF534_k4me3_EncodeTxn_NANOG_GRO1of7_7down____chrX_138258661138259059____1398 -GTCAGACCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------ATGCACA TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTGCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAATGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----C----------TCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACT-C-TGCCCGCCAGAGAAAAACCC CCC-TTTGACTGTAATTTTCCTTTATCTACCCA-AATCCTATAA-----------AATG- GCCCCACCC-T-T-ATCTCCCTTCGTTGACTCTCTTTTTGGACTCAGCCCACCTGCACCC AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACACGCATGA--------- >LTR7d1_chr3_164342181_164347849_3077_ZNF90_KAP1_EncodeTxn_GRO7of7_C_7down___chr3_164347441164347849___1408 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCTTCATATCT CCTGTGAC---------------------------------------------TTGCACG TGCACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------TC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACT-C-TGCCCGCCAGAGAACAACCC CCC-TTTGACTGTAATTTTTCTTTATCTACCCA-AATCCTATAA-----------AATG- GCCCCACCC-T-T-ACCTCCCTTCACTGACTCTCTTTTTGGACTCATCCCGCCTGCACCC AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGGCGCGCATG---------- >LTR7d1_chr19_20068808_20069207_h3k27ac_weakenh_SOLO_NANOG_SOX2_C_7down___chr19_2006880820069207___1398 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTG---- TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------TGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCCATTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCACCCTGTCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACT-C-TGCCCACCAGAGAACAACCC CCC-TTTGACTGTAATTT------ATCTACCCA-AATCCTATAA-----------AATG- TCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTTGGACTCAGCCTGCCTGTACCC AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGACTG--TTT--GGTGGTCT CTTCACACGGACGCGCATG---------- >LTR7d1_chr2_98192227_98192634_EncodeRepressed_SOLO_C_7down___chr2_9819222798192634___1407 TGTCAGGCCTCTGGGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTACACA TACACATCCAGA------------------------------------------------ -----------------------------TGGCT-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC GTT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTTCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACT-C-TGCCCGCCAGAGAACAACCC C-C-TTTGACTGTAATTTTCCTTTATCTACCCA-AATCCTATAA-----------AACG- CCCCCAACC-T-T-ATCTCCCTTTGCTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCACATG---------- >LTR7d1_chr1_147833885_147834292_enh_SOLO_NANOG_7down____chr1_147833885147834292____1407 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACA TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCCGG-------------- ----CTCATCCTAGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACT-C-TGCCCGCCAGAGAACAACCC C-C-TTTGACTGTAATTTTCCTTTATCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTTGCTGACTCTCTTTTCAGACTCAGCCCGCTTGCACCC AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--AGTGGTCT CTTCACACGGACACACATGA--------- >LTR7d1_chr1_248335766_248341106_2501_1_EncodeRepressed_GRO5of7_GRO6of7_GRO7of7_C_7down___chr1_248340699248341106___1407 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTCAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACAGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACT-C-TGCCCGCCAGAGAACAACCC C-C-TTTGACTGTAATTTTCCTTTATCTACCCA-AATCCTATAC-----------AACG- ACCCCACCC-T-T-ATCTCCCTTTGCTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC AGGTG-------A--TTAAAAGCTTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCAAACGGATGCACAT----------- >LTR7d1_chr11_122824428_122832822_2198_ZNF534_ZNF90_KAP1_EncodeTxn_7down____chr11_122824428122824830____1402 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGACATCATATCC CCTGTG--------------------------------------------------CACA TACATACCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGGT----------------------- ---GATATTCCACTACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACT-C-TGCCCACCAGAGAACAACCC C-C-TTTGACTGTAATTTTCCTTTATCTACCCA-AATCCTATAA-----------AACG- ACCCCACCC-T-T-ATCTCCCTTCGCTGACTTTCTTTTCAGACTCAGCCCACCTGCACCC AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--AGTGGTCT CTTCAAACAGACGCGCATGA--------- >LTR7d1_chr3_191895384_191901110_4259_ZNF534_ZNF90_KAP1_EncodeRepressed_NANOG_GRO3of7_C_7down___chr3_191900702191901110___1408 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CGGCACA TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------AGTTTCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----TTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CCCATCCTGGCTCAA--AAGCTCTCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACTTTGTG-------------- ---------------------------AC-CCCCACT-C-TGCCCGCCAGAGAACAACCC C-C-TTTGTCTGTAATTTTCTTTTATCTACCCA-AATCCTATAA-----------AATG- ACCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCAGACTCAGCCTCCCTGCACCC AGGTG-------A--TCAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGACACGCATG---------- >LTR7d1_chr4_1180628411811938_3147_ZNF534_ZNF90_KAP1_EncodeTxn_NANOG_GRO2of7__chr4_1180628411806743____1408 -GTCAGGCCTCTGAGCCTAAG-----------------------CTAAGCCTTCATATCC CCTGTGAC---------------------------------------------CTGCATG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCAGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCGACT-C-TGCCCGCCAGAGAGCAAACC CCC-TTTGACTGCAATTCTCCTTTATCTACCCA-AATCCTATAA-----------AACG- GCCCCATCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC AGGTG-------A--TTAAAAGTTTTATTGCTCACACAAAGCCTG--TTT--GGTAGTCT CTTCACACTGACGCGCATGA--------- >LTR7d1_chrX_16179202_16184434_2335_ZNF534_k4me3_EncodeRepressed_NANOG_C_7down___chrX_1618402916184434___1405 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC TCTGTGAC---------------------------------------------CTGCACG TACATATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ACT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTTCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACT-C-TGCCAGCCAGAGAAC---CC CCC-TTTGACTGTAATTTTCCTTTATCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTACACCC AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--AGTAGTCT CCTCACACTGACGCGCATG---------- >LTR7d1_chr1_53449415_53449824_h3k27ac_enh_SOLO_NANOG_TCF4_7down____chr1_5344941553449824____1408 -GTCAGGTCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ACT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACT-C-TGCCCGCCAGAGAACAACCC CCC-TTTGACTGTAATTTTCCTTTATCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GTTGGTCT CTTCACACGGATGCGCATGA--------- >LTR7d1_chr3_161721915_161727777_3273_ZNF534_ZNF90_KAP1_EncodeTxn_NANOG_GRO7of7_C_7down___chr3_161727371161727777___1406 TGTGAGGCCTCTGAGCCCAAG-----------------------TTAAGCCATCATGTCC CCCGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTTC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----TTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACT-C-TGCCCGCCAGAGAACAACC- CCC-TTTGACTGTAATTTTCCTTTATCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTCACTGACTCTCTTTTTGGACTCAGCCTG-CTGCACCC AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTTTTCT CTTCACACGGATGCGCATG---------- >LTR7d1_chr8_63888201_63888569_h3k27ac_EncodeRepressed_SOLO_NANOG_7down____chr8_6388820163888569____1368 -GTCAGGCCTCTGAGCCCAAG-----------------------GTAAGCCATCATATCC CTTGTGAC---------------------------------------------CTGCACA TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTTCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACT-C-TGCCTGCCAGAGAACAACCC CCC-TTTGACTGTAATTTTCCTTTATCTACCCA-AGTCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTCACTGACTCTCTTTTCAGACTCAGCCGGCCTGCACCC AGGTG-------A--TTAAAAGCTTTATTTCTCACA------------------------ ----------------------------- >LTR7d1_chr13_87186449_87192108_2355_ZNF534_ZNF90_KAP1_k4me3_EncodeTxn_FOXP1_NANOG_GRO3of7_C_7down___chr13_8719170087192108___1408 TGTCAGGCCTCTGAGCCCAAG-----------------------GTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACA TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTTCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACT-C-TGCCTGCCAGAGAACAACCC CCC-TTTGACTGTAATTTTCCTTTATCTACCCA-AGTCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCAGCCTGCACCC AGGTG-------A--TTAAAAGCTTTATTTCTCACACAAAGACTG--TTT--GGTGGTCT CTTTACACAGACGTGCATG---------- >LTR7d1_chr3_170817615_170823761_5821_ZNF534_KAP1_EncodeRepressed_C_7down___chr3_170823356170823761___1405 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACACCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAGAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ACT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAG--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACT-C-TGCCTGCCAGAGAAC---CC CCA-TTTGACTGTAATTTTCCTTTATCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCTCTGACTCTCTTTTCAGACTCAGCCAGCCTGCACCC AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGATTT CTTCACACAGACTCACATG---------- >LTR7d1_chr3_192995645_193001388_4652_ZNF534_ZNF90_KAP1_EncodeTxn_NANOG_7down____chr3_192995645192996056____1408 -GTCAGGCTTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCATG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACT-C-TGCCCGCCAGAGAACAACCC CCC-TTTGACTGTAATTTTCCTTTATCTACCCA-AATCCTGTAA-----------AATG- GCCCCACTC-T-T-ATCTCCCTTCACTGACTCTCTTTTCAGACTCAGCCTGCCTGCACCT GGGTG-------A--TTAAAAGGTTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACATGCATGA--------- >LTR7d1_chr8_48261721_48262129_weakenh_SOLO_NANOG_C_7down___chr8_4826172148262129___1407 TGTCA-GCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCATG TACACATCCAGA------------------------------------------------ -----------------------------TGGCT-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCGTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACCTTGTG-------------- ---------------------------AC-CCCCACT-C-TGCCCACCAGAGAACAACTC CCC-TTTGACTGTAATTTTCCTTTATCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCTGCCTGTGCCC AGGCA-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGATCT CTTCACACGGACATGCATG---------- >LTR7d1_chrX_6272220_6277943_4663_ZNF534_KAP1_EncodeRepressed_GRO5of7_GRO6of7_GRO7of7_C_7down___chrX_62775356277943___1407 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ACT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACCTTGTG-------------- ---------------------------AC-CCCCACT-C-TGACCGACAGAGAACAAC-C CCC-TTTGACTGTAATTTTCCTTTATCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTA--TTT--GGTGGTCT CTTCACACGGACGCACATG---------- >LTR7d1_chr18_29000350_29000757_EncodeTxn_SOLO_NANOG_SMAD11_C_7down___chr18_2900035029000757___1406 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTTCACG TACA-ATCCAGA------------------------------------------------ -----------------------------TGGCT-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CCCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACCTTGTG-------------- ---------------------------AC-CCCCACT-C-TGCCCACCAGAGAACAAA-C CCC-TTTGACTGTAATTTTCCTTTATCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGCACATG---------- >LTR7d1_chr10_90384552_90384961_EncodeRepressed_SOLO_NANOG_TCF4_7down____chr10_9038455290384961____1408 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCATG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTTCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCACAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACCTTGTG-------------- ---------------------------AC-CCCCACC-C-TGCCCACCAGAGAACAAC-C CCC-TTTGACTGTAATTTTCCTTTATCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC AGGTG-------A--TTAAAAGCTTTATTGCTCACACTAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGCACATGA--------- >LTR7d1_chr1_79638762_79644487_4503_ZNF534_EncodeTxn_GRO4of7_C_7down___chr1_7964408379644487___1403 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCAT-TCC CCTGTGAC---------------------------------------------CTACACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAC----------------------- ---CACAGTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTT---CTGG-------------- ----CTCATTCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACCTTGTG-------------- ---------------------------AC-CCCCACT-C-TGCCCACCAGAGAACAAC-C CCC-TTTGACTGTATTTTTCCTTTATCTACCCA-AATCCTATAA-----------AATG- GCCCCACTT-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTG-------A--TTAAAAGCTTTATTGCTCATACAAAGCTTA--TTT--GGTGGTCT CTTCACACAGACGCGCATG---------- >LTR7d1_chr5_110530936110535513_2344_1_EncodeTxn_GRO2of7__chr5_110530936110531331____1395 -GTCAGGCCTCTGAGCCTAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCCCG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCAGCCTTAACTGAT----------------------- ---GACATTCCACCACAAA---AGTGAAAATGACCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCCTGTG-------------- ---------------------------AC-CCCCACTTC-TGCCCGCCAGAGAACAACCC CCC-T----------TTTTCCTTTACCTACCCA-AATCCTATAA-----------AATG- GCCCCACCC-C---ATCTCCCTTCACTGACTCTCTTTTTAGACTCAGCCCGCCTGCACCC AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--AGTAGTCT CTTCACACGGACACACATGA--------- >LTR7d1_chr2_208893768_208905467_2916_ZNF534_EncodeRepressed_GRO5of7_GRO6of7_GRO7of7_7down____chr2_208893768208894167____1399 -GTCAGGCCTCTGAGCCTAAG-----------------------CTAAGCCATAATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCT-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCAACACAAAAGAAGTGAAAATGGCTTGTTCC------------------- ------------TA------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GCGAAATTTCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAA----CACCTTGGG-------------- ---------------------------AC-CCCTACTCC-TGCCCGCCAGACCACAACCC CCC-T----------TTTTCCTTTACATACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCACTGACTCTCTTTTCAGACTCAGCCAGCCTGCACCC AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAACCTG--TTT--GGTGGTCT CTTCACACAGACGCGCATGA--------- >LTR7d1_chr11_102904000_102909908_3326_ZNF534_ZNF90_KAP1_EncodeRepressed_GRO4of7_C_7down___chr11_102909501102909908___1407 TGTCAGGCCTCTAAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACAACCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATCATCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------CTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAACTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TACCCGCCAGAGAACAACCC CTT-T--GACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCT-C-T-ATCTCCTTTCACTGACTCTCTTTTCAGACTCAGCCCACCTGCACCC AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAAACGTGCGTG---------- >LTR7d1_chr6_148639772_148645508_4451_ZNF534_KAP1_EncodeRepressed_NANOG_7down____chr6_148639772148640179____1406 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCCGG-------------- ----CTCATCCCGGCTCAG--AAGATCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAACCC CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG- GCCCCAC-C-C-C-ATCTCTCTTCACTGACTCTTTTT--GGACTCAGCCCGCCTGCACCC AGGTG-------A--TTAAAAGCTTTATTGCTCACATAAAGCCTG--TTT--GGTGGTCT CTTCACACAGACGTGCATGA--------- >LTR7d2_chr6_62585932_62591724_4658_ZNF534_KAP1_EncodeTxn_NANOG_7down____chr6_6258593262586380____1397 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCT--GAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGTG-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AGGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACCTTGTC-------------- ---------------------------AC-CCCCATTCC-TGCCCACCAGAGAACAACCC CCC-TT----------TTTCCTTTACCTACCCA-AATCCTACAA-----------AACG- GCCCCACAC-C-T-ATCTCTCTTCACTGACTCTCTTTTGGGACTCAGCCCGCCTGCACCC AGGTG-------A--TTAAAAGCTTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGATGCGTGTGA--------- >LTR7d1_chr4_133263579_133268907_3428_1_k27ac_EncodeTxn_C_7down___chr4_133268509133268907___1398 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCACATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAGCTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTTCTCA-------------- ----CTCATCCTGGCTTAA--AAGCTCACCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACATTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAACCC CCC-T----------TTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCCCTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC ATGTG-------A--TTAAAAG-TTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGACGCGCATG---------- >LTR7d1_chr21_16631053_16631452_EncodeRepressed_SOLO_7down____chr21_1663105316631452____1399 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CAGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAATTAAAATGGCCTGTTCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCAAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CATCTTGTG-------------- ---------------------------AC-CCCCACTCT-TGCCTGCCAGAGAACAACCC CAC-T----------TTTTCCTTTACCTACCCA-AATCCTATAA-----------AACA- GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC AGGTG-------A--TTAAAATCTTTATTGCTCACACAAAGCCTG--TTT--GGTGATCT CTTCACAGGGATGCGCATGA--------- >LTR7d1_chr3_106922769_106928372_3371_ZNF534_KAP1_EncodeTxn_C_7down___chr3_106927983106928372___1389 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACA TTCACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCTTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCCTCTCCTGG-------------- ----CTC----------AA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCTACTCC-TGCCTGCCAGAGAACAACCC CCC-T----------TTTTCCTTTTCCTACCCA-AATCCTATAA-----------AACA- GCCCCACCC-C-T-ATCTCACTTTGCTGATTCTCTTTTTGGACTCAGCCCGCCTGCACCC AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAATCCTG--TTT--GGTGGTCT CTTCACAGGGACGCGCATG---------- >LTR7d1_chr2_146539893_146540292_h3k27ac_enh_SOLO_NANOG_44108_SMAD11_TCF4_7down____chr2_146539893146540292____1398 -GTCAGGCCTCTGAGCCCAAG-----------------------CTACGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGG------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAATGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGGC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-GCCCACTCC-TGCCTGCCAGAGAACAACCC CCC-T----------TTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C---ATCTCCCTTTGCTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC AGGTG-------A--TTAAAAGCTTTATTGTTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGCGCATGA--------- >LTR7d1_chr11_25579395_25579817_enh_SOLO_NANOG_SMAD11_C_7down___chr11_2557939525579817___1396 TGTCAGACCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC C--GTGAT---------------------------------------------TTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAATGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----TTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAACCC CCC-T----------TTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C---ATCTCCCTTCGCTGACTCTCTTTTCAGACTCAGCCCGCCTGTACGC AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACACGCATG---------- >LTR7d1_chr3_20976906_20977305_EncodeTxn_SOLO_NANOG_SMAD11_TCF4_C_7down___chr3_2097690620977305___1397 TGTCAGGCCTCTGGGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGA-GAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--TTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACTTTGTG-------------- ---------------------------AC-CCCCATTCC-TGCCCACCAGAGAACAACCC CCC-T----------TTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C---ATCTCCCTTGGCTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC AGGTG-------A--TCAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGCTCGCGCATG---------- >LTR7d1_chr3_109176402_109176803_EncodeTxn_SOLO_C_7down___chr3_109176402109176803___1399 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCAGG TAAACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTTCTGCCTTAACTGAT----------------------- ---GACATTCCGCCACAAAAGAAGTGAAAATGGCCTATTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCATTCC-TGCCCCCCAGAGAACAACCC CCC-T----------TTTTCCTTTACCTACCCA-AATCCTATAA-----------AACA- GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTG--GGTGGTCT CTTCACACGGACGCACAT-A--------- >LTR7d1_chr13_110486602_110486998_enh_SOLO_NANOG_C_7down___chr13_110486602110486998___1394 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCAATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTTCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCAGCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAACCC CCC-T----------TTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCAGACTCAGCCTGCCTGCACCC AGGTG-------A--TTAACAGCTTGATTGCTCACACAAAGCCTG--TTT--GGTGGTCT TTTCACACGGACGC--------------- >LTR7d1_chr4_6528607_6529011_weakenh_SOLO_7down____chr4_65286076529011____1404 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGTCATCATATC- CCTGTGAC---------------------------------------------CTGCACA TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAACCC -CC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTTGCTGACTGTCTTTTCAGACTCAGCCGGCCTGCAACC AGGTG-------A--TTAAAAGCTTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCA------------ >LTR7d1_chr12_60951268_60957619_3267_ZNF534_EncodeTxn_GRO5of7_GRO6of7_GRO7of7_C_7down___chr12_6095721660957619___1403 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAACTATCATATCC CCTGTGAC---------------------------------------------GTGCACA TACACATCCAGA------------------------------------------------ -----------------------------CGGCC-------------------------- ------------------AGTGCCTGCCTTAATTGAT----------------------- ---GACATTCCACCACAAAAGAAATGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCCTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCATGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAACCC --C-TTTGACT--AATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACA- GCCCCACCC-C-T-ATCTCCCTCCACTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC AGGTG-------A--TTAAAAGCTTTATTGCTCACAC-AAGTCTG--TTT--GGTGGTCT CTTCACATGGATGTGCATG---------- >LTR7d1_chr11_133626775_133632692_3454_ZNF534_EncodeTxn_GRO4of7_7down____chr11_133626775133627185____1407 -ATCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCA-AAAAGAAATGAAAATGGCCTGTTCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GGG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCACTAGAGAGAAACCC --C-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACA- TCCCCACTC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTG-------A--TTAAAAGCTTTATTGTTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGTGCATGA--------- >LTR7d1_chr3_152597016_152603153_2326_ZNF534_EncodeTxn_NANOG_GRO1of7_7down____chr3_152597016152597424____1406 -GTCAGGCCTCTGAGCCTAAG-----------------------CTAAGCCATCATATCC CCCGTAAC---------------------------------------------CTGCATG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------GC----------TTAA----TGGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAACCC --C-TTTGACTATAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG- GCCCCAACC-C---ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTG-------A--TGAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGTGCATGA--------- >LTR7d2_chr11_116450269_116450679_EncodeRepressed_SOLO_NANOG_7down____chr11_116450269116450679____1410 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCCCG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACAATCCACCACAAAAGAAGTGAAAATGGCCCGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGC-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAAC-C CCC-TTTGACTGTAATTTTCCTTTACCTATCCA-AATCTTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGATGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGATCT CTTCACACGGACACGCATGA--------- >LTR7d2_chr7_124729157124734734_3295_ZNF534_KAP1_EncodeRepressed_NANOG_GRO2of7__chr7_124729157124729555____1398 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGTTATCATATCC CTTGTGAC---------------------------------------------CTGCACA TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCC----------------- -----------TGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAAC--C-C CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AATG- GCCCCACCC-C-T-ATCTCTCTTCACTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGACACGCATGA--------- >LTR7d2_chr3_911603_912013_EncodeTxn_SOLO_NANOG_C_7down___chr3_911603912013___1409 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACA TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTCCC------------------- ------------TG------------------CC----------TTAA----CCGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAA----CACCTTGTG-------------- ---------------------------AC-CCCCACCC--TGCCCGCCAGAGAACAACCC CCC-TTTGACTGTAATTTTCCTTTACCTTCCCA-AATCCTATTA-----------AA-G- GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCCGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATG---------- >LTR7d2_chr15_46680150_46680560_h3k27ac_EncodeTxn_SOLO_NANOG_7down____chr15_4668015046680560____1410 -GTCAGGCCTCTGAGACCAAG-----------------------CTAAGCCATCATATCC CCTGTGAG---------------------------------------------CTGCACA TACACATCCAGA------------------------------------------------ -----------------------------TAGCC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCCA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTC--TGCCCGCCAGAGAACAACTC CCC-TTTGACTGTAACTTTCCTTTATCTACCCA-AACCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTCACTCACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACCCAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGAGTG---------- >LTR7d2_chr6_120924825120930857_2237_ZNF534_KAP1_EncodeTxn_GRO2of7__chr6_120924825120925234____1409 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACA TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------AATTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ACT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACCTGGCG-------------- ---------------------------AC-TCTCACTC--TGCCTGCCAGAGAAAAACTC CCC-TTTGACTGTAATTTTCCTTTATCTACCCA-AATCTTATAA-----------AATG- GCCCCACCC-T-T-ATCTCCCTCCCCTGACTTTCTTTTCAGACTCAGCCCACCTGCACC- AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGACGTGCATG---------- >LTR7d2_chr2_207017218_207023284_5821_ZNF534_KAP1_EncodeTxn_GRO3of7_7down____chr2_207017218207017627____1409 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC ACTGTGAC---------------------------------------------CTGCACA TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ACT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTC-TGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCCTGTG-------------- ---------------------------AC-CCCCACTC--TGCCCGCCAGAGAACAACCC CCC-GTTGACTGTAATTTTCCTTTATCTACCCA-AATCTTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAACCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATG---------- >LTR7d2_chr3_146362086_146367972_3131_ZNF534_ZNF90_KAP1_EncodeTxn_7down____chr3_146362086146362495____1409 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATGTCC CCTGTGAC---------------------------------------------CTGCACA TACACATCCAGA------------------------------------------------ -----------------------------TGTCT-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GATATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCAT-CTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGGG-------------- ---------------------------AC-CCCCACTC--TGCCCACCAGAGAACAACCC CCC-TTTGACTGTAATTTTCCTTTATCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-G-T-ATCTCCCTTCTCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGACACACATG---------- >LTR7d2_chrX_6308003_6308363_EncodeRepressed_SOLO_7down____chrX_63080036308363____1359 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCATG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCT------------------------------- ------------------------------------------------------------ ---------------------------------------------TAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTTTCCTGG-------------- ----CTCATCTGGTCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACTTTGTG-------------- ---------------------------AC-CCCCACTC--TGCCCGCCAGAGAACAACTC CCC-TTTGACTGTAATTTTCCTTTATCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTCCGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATG---------- >LTR7d2_chr20_45759334_45765245_1461_ZNF534_ZNF90_KAP1_EncodeRepressed_NANOG_GRO1of7_7down____chr20_4575933445759751____1410 -GTCAGACCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACA TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTTTCCTGG-------------- ----CTCATCCTGTCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCACACTC--TGCCCTCCAGAGAACAACTC CCC-TTTGACTGTAATTTTCCTTTATCTACCCA-AATCCCATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTCACTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCACGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATG---------- >LTR7d2_chr1_150641376_150641787_h3k27ac_enh_SOLO_NANOG_SMAD11_SOX2_7down____chr1_150641376150641787____1410 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACA TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTTTCCTGG-------------- ----CTCATCCTGTCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCCTGTG-------------- ---------------------------AC-CCCCACTC--TGTCCGCCAGAGAACAACAC CCC-TTTGACTGTAATTTTCCTTTATCTACCCA-AATCCTATAA-----------AACA- GCCGCACCC-T-T-ATCTTCCTTCGCTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGCACGAGCATG---------- >LTR7d2_chrX_131712025_131717764_4499_ZNF534_KAP1_EncodeTxn_GRO4of7_7down____chrX_131712025131712446____1410 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTTTCTTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCGACTC--TGCCCGCCAGAGAACAACTC CCC-TTTGACTATAATTTTCCTTTATCTACCCA-AATCCTATAA-----------AACA- GCCCCACCT-T-T-ATCTCCCTTCCCTGACTCTCTTTTCAGACTCAGCCCGCCTGCGCCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--AGTGGTCT CTTCACACGGACGTGCATG---------- >LTR7d2_chr17_76605988_76611511_3491_ZNF534_ZNF90_KAP1_EncodeTxn_NANOG_GRO5of7_GRO6of7_GRO7of7_C_7down___chr17_7661108576611511___1408 TGTCAGGCCTCTGAGCTGAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACGTTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------CG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTGC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCC-GCTC--TGCCCGCCAGAGAACAA-AC CCC-TTTGACTGTAATTTTCCTTTATCCACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACACAGCCTG--TTT--GGTGGTTT CTTCACACGGCCGCGCATG---------- >LTR7d2_chr4_68405894_68406295_h3k4me3_TSS_SOLO_FOXP1_MED1_NANOG_44108_SMAD11_SOX2_TCF4_7down____chr4_6840589468406295____1400 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCGTATCC CCTGTGAC---------------------------------------------TTGCACA TACACATCCCGG------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTTC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTT--------------------- -------ATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTC--TGCCCGCCAGCGAACAACCC CCC-TTTGACTGTAATTTTCCTTTATCTACCCA-AATCCTATAA-----------AACG- GTCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGATGCACATG---------- >LTR7d2_chr13_61088458_61094439_4519_1_k4me3_EncodeTxn_NANOG_GRO3of7_7down____chr13_6108845861088865____1407 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTCCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTTCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AG-CCCCACTC--TGCCCGCCAGAGAACAAC-C CCC-TTTGACTGTAATTTTCCTTTATCTACCCA-AATCCTATAA-----------AACA- GCCCCACCC-T-T-ATCTCCCTTTGCTGACT--CTTTTCAGACTCAGCCCGCCTGCACTC AGGTGA-----AA--TAAACAGCCTTGTGGCTCACACAAAGCCTA--TTT--GGTGGTCT CTTCACACGGATGCGCATG---------- >LTR7d2_chr6_12667170_12673014_3210_ZNF534_ZNF90_KAP1_EncodeTxn_wangmod_GRO5of7_GRO6of7_GRO7of7_7down____chr6_1266717012667579____1409 -GTCAGGTCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAG ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCCGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------A--CCCCACTC--TGCCCACCAGAGAACAACCC CCC-TTTGACTGTCATTTTCCTTTATCTACCCA-AATCCTATAA-----------AACA- GCCCCACCC-T-T-ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCGTGTTCCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGTATG---------- >LTR7d2_chr1_212908311_212908714_h3k27ac_enh_SOLO_NANOG_C_7down___chr1_212908311212908714___1403 -------CCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCTTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTC--TGCCCGCCAGAGAACAACCC CCC-TTTGACTGTAATTTTCCTTTATCTACCCA-AATCCTATAA-----------AATG- GCCCCACCC-T-T-ATCTCCTTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACGC AGGTGA-----AA--TAAACCACCTTGTTGCTCATACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATG---------- >LTR7d2_chr14_87234691_87240791_5947_ZNF534_k4me3_enh_FOXP1_NANOG_C_7down___chr14_8724038487240791___1407 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACA TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAAAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGACGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTC--TGCCTGCCAGAGAACAACT- CCC-TTTGACTGTAGTTTTCCTTTATCTACCC--AATCCTATAA-----------AACG- GCTCCACCC-T-T-ATCTCCCTTTGCTGACTCTCTTTTTGGACTCAGCCTGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGCTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCAC----------ATG---------- >LTR7d2_chr2_208215925_208221935_4314_ZNF534_ZNF90_KAP1_EncodeRepressed_C_7down___chr2_208221531208221935___1397 -----GGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCATG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCATAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CATGTTGTG-------------- ---------------------------AC-CCCCACTC--TGCCTGCCAGAGAACAACC- CCC-TTTGACTGTAATTTTCCTTTATCTACCCA-AATCCTATAA-----------AACG- GCACCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACAC-------CATG---------- >LTR7d2_chr8_18393944_18394351_SOLO_C_7down___chr8_1839394418394351___1407 TGTCAGGCCTCTGAGCCTAAG-----------------------CTAAGCCATCATATCC C--GTGAC---------------------------------------------CTGCATG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTA-CTGAT----------------------- ---GACATTCCACCACAAAAGATGGGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ACT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--TAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTC--TGCCTGCCAGAGAACAACCC CCC-TTTGACTGTACTTTTCTTTTATCTATCCA-AATCCTATAA-----------AATG- GCCCCACCC-T-T-ATCTCCCTTCACTGACTCTCTTTTAGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAGAGTCTG--TTT--GGTGGTCT CTTCACACGGATGTGCATG---------- >LTR7d2_chr5_162275428_162281160_4597_ZNF534_EncodeTxn_NANOG_GRO4of7_C_7down___chr5_162280751162281160___1407 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCAGG TACACATCCAGA------------------------------------------------ -----------------------------TGGCT-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAA-AGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ACT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTGC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTC--CCCCT-CCAGAGAACAA-CC CCC-TTTGACTGTAATTTTCCTTTATCCACCCA-AATCCTATAA-----------AATG- GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGACGCGCATG---------- >LTR7d2_chr3_173353080_173353490_EncodeRepressed_SOLO_NANOG_C_7down___chr3_173353080173353490___1410 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCAGG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGATAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTCA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----TTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTC--TCCCTGCCAGAGAACAACCC CCC-TTTGACTGTAATTTTCCTTTATCTACCCA-AATCCTATAA-----------AATG- GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCAGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGACACACATG---------- >LTR7d2_chr3_145551229_145556922_4420_ZNF534_k27ac_EncodeTxn_NANOG_GRO7of7_C_7down___chr3_145556513145556922___1409 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAAA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGAGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTC--TGCTTGCCAGAGAACAACCC CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCAACC-C---ATCTCCCTTCGCTGACTCTCTTTTCAGACTCAGCCTGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGGTGCTCACACAAAGTCTG--TTT--GGTGGTCT CTTCCCACAGATGCTCATG---------- >LTR7d2_chr4_134677937_134683552_3284_ZNF534_KAP1_EncodeTxn_NANOG_C_7down___chr4_134683146134683552___1405 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCATG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGCAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CATCTTGTG-------------- ---------------------------AC-CCCCACTC--TGCCCGCCAGAGAACAACCC CCC-TTTG----TAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C---ATCTCCCTTCCCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGACGTGTATG---------- >LTR7d2_chr12_60979274_60979684_h3k27ac_EncodeTxn_SOLO_C_7down___chr12_6097927460979684___1410 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAACCATCATATCC CCTGTGGC---------------------------------------------CTGCATG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATG--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTC--TGCCCACCAGAGAACAACCC CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACA- GCCCCACCC-C-T-ATCTCCCTTCTCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC CGGTGA-----AA--TAAACAGCTATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGTGCATG---------- >LTR7d2_chr5_170762081170767864_3291_ZNF534_ZNF90_KAP1_k4me3_weakenh_GRO2of7__chr5_170767456170767864___1408 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCACCATATCC CCTGTGGC---------------------------------------------CTGCATG TACACATCCATA------------------------------------------------ -----------------------------TGGCT-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTATTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATC--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTAGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTC--TGCCCGTCAGAGAACAACCC CCC-TTTGACTGTAATTTTCCATTACCTACCCA-AATCCTATAA-----------AATG- GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCT--TTTCAGACGCAGCCTGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACATGCATG---------- >LTR7d2_chr6_16259012_16264893_3426_ZNF534_k4me3_EncodeRepressed_NANOG_SMAD11_wangmod_chimeric_C_7down___chr6_1626448216264893___1410 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCATG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTC--TGCCCACCAGAGAACAACCC CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCACATG---------- >LTR7d2_chr1_225810575_225810980_h3k4me3_TSS_SOLO_NANOG_TCF4_C_7down___chr1_225810575225810980___1402 TGTCAGGCCTCTGAGCCGAAG-----------------------CTAAGCCATCATATCC CCTGTGGC---------------------------------------------CTGCACC TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GTCATTCCACCACAAAA---GTGAAAATGACCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTC--TGCCCGCCAGAGA---ACCC CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTGGCTGACTCT--TTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATG---------- >LTR7d2_chr3_21189020_21194203_3120_1_GRO4of7_C_7down___chr3_2119380521194203___1398 --TCAGGCCTCTGAGCCCCAG-----------------------CTAAGCCATGATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ACT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGTTCAA--AAGCTCCCCTGC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAC----CACCCTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAACCC CCT-TTTTCCTT-----------TACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCGCTGACCCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCGTG--TTT--GGTGGTCT CTTCACATGGATGCCCATG---------- >LTR7d2_chr3_191691054_191691474_enh_SOLO_NANOG_C_7down___chr3_191691054191691474___1411 TATCAGGCCTCTGAGTCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---GACGTTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACACC-TGCCCGCCAGAGAACAACCC CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTCATAA-----------AACA- GCCCCACCC-C-T-ATCACCCTTCATGGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGTTCACACAAAGCCTG--TTT--GGTGGTCT CTTTACATGGATGCACATG---------- >LTR7d2_chrX_30448932_30454861_4785_ZNF534_KAP1_EncodeTxn_NANOG_GRO5of7_GRO6of7_GRO7of7_C_7down___chrX_3045440130454861___1409 TATCAGGCCTCTGAGCCTAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACA TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------AGTTCCTGCCTTAATTGAT----------------------- ---GACATTCCAGCACAAAAGAAGTGAAAATGGCCTGTTCT------------------- ------------TG------------------CC----------TTAA----TTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTTG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACCTTGTG-------------- ---------------------------AC-CCCCACT-C-TGCCCGCCAGAGAACAA-CC CCC-TTTGACTGTAATTTTCCTTTATCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-C-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGTGCATG---------- >LTR7d2_chr9_69823626_69824033_h3k27ac_enh_SOLO_NANOG_C_7down___chr9_6982362669824033___1406 TGTCAGGCCTCTGAGCCCAAA-----------------------CTAAGCCATCATATCG CCGGTGAC---------------------------------------------CTGCACG TACACATCTAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAG ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCACCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CATCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAAATC CCA-TTTGACTGTAATTTTCCTTTATCTATCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTCACTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAGAGCCTG--TTT--GGTGGTCT CTTCAAATGCACGT--------------- >LTR7d2_chrX_142423376_142428961_2994_KAP1_EncodeTxn_GRO4of7_C_7down___chrX_142428549142428961___1409 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CC-GTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------AGTTCTTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCTTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCCTGTG-------------- ---------------------------AC-CCCCCCTCC-TGCCCGCCAGAGAACAACCC CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCACACCC---C-ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTACTCACACAAAGCCTG--ATT--GGTGGTCT CTTCACATGGATGTGCATG---------- >LTR7d2_chr3_39577832_39583618_3225_ZNF534_ZNF90_KAP1_EncodeTxn_NANOG_GRO3of7_C_7down___chr3_3958320939583618___1409 TGTTAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTAAC---------------------------------------------CTGCACA TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCA-CACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-TCCCACTC--TGCCAGCCAGAGAACAACCC CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTGTAA-----------AACA- GCCCCACCC-C---ATCTCCCTTCGCTGACTCTCTTTTCAGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAATAGCCATGTTGCTCACACAAAGGCTG--TTT--GGTGGTCT CTTCACAGGGACGCGCATG---------- >LTR7d2_chr10_5470768_5477012_2822_ZNF534_ZNF90_KAP1_EncodeRepressed_GRO1of7_7down____chr10_54707685471177____1409 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCGTATCC CCTGTGAC---------------------------------------------CTGCACA TACA-ATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCATAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CT----------TTAA----CTGATGAC ATA--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAAACC CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACA- GCCCCACCC-C---ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACATGCATGA--------- >LTR7d2_chr8_83504703_83510920_3282_ZNF534_EncodeRepressed_GRO4of7_C_7down___chr8_8351052283510920___1398 TGTCAGGCCTCTGAGCCCA-------------------------CTAAGCCATCATATCC CCTGTTAC---------------------------------------------CTGCACA TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CCGATGAC ACT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCCTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAACCC CCC-TTT----------TTCCTTTACCTACCCA-AATCCTATAA-----------AACA- GCCCCACCC-C---ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACTC ATGTGA-----AA--TAAACAGAGTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGCACGTG---------- >LTR7d2_chr4_39274463933080_3145_1_k4me3_enh_NANOG_GRO2of7__chr4_39274463927854____1408 -GTCAGGCCTCTGAGCTCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCAGG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------CGTTCCTGCCTTAACTGAC----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGTCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AACCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TAGCTTGTG-------------- ---------------------------AC-CCCCACTC--TGCCTGCCAGAGAACAACCC TCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C---ATCTCCCTTTGCTGACCCTCTTTTCAGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTCGTCT CTTCACACAGACACGCATG---------- >LTR7d2_chr7_6903791_6908992_4337_ZNF534_EncodeTxn_7down____chr7_69037916904200____1409 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATAGCC CCTGTGAC---------------------------------------------CTGCATG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC GTT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--ATGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AACCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACCTTGTG-------------- ---------------------------AC-ACCGACTC--TGCCTGCCAGAGAACAACCT CCC-TTTGACTGTAATTTTCCTTTGCCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCT-TTCAGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTC--TTT--GGTGGTCT CTTCACATGGACGCACATGA--------- >LTR7d2_chr3_130059102_130064974_3265_1_k4me3_EncodeTxn_NANOG_7down____chr3_130059102130059560____1407 -GTCAGGTCTCTGAGCCCAAG-----------------------ATAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACA TACACATCCAGA------------------------------------------------ -----------------------------TGGCT-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCTCCACAAAAGAAGTGAAAATGGTCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATTCTGGCTCAA--AACCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACCTTCTG-------------- ---------------------------AC-CCCCACTC--TGCCTGCCAGAGAACAAACC CCC-TTTGACTGTAATTTTCCTTTGCCTACCCA-AATCCTATAA-----------AATG- GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCT-TTCAGACCCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACA--AAGTCTG--TTT--GGTGGTCT CTTCACATGGACGCACATGA--------- >LTR7d2_chr1_54897904_54903584_4518_ZNF534_ZNF90_KAP1_EncodeTxn_chimeric_GRO5of7_GRO6of7_GRO7of7_C_7down___chr1_5490318654903584___1398 TGTCAGGCCTCTGAGCCCAAG-----------------------CGAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACA TACACTCCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCCGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACCTTGTG-------------- ---------------------------AC-CCCCATTC--TGCCTGCCAGAG---AACCC CCT-T----------TTTTCCTTTACCTACCCA-AATCCTATAA-----------AATG- GCCCCAACC-T-T-ATCCCCTTTTGCTGACTTTCTTTTTGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAGAGCCTG--TTT--GGTGGTCT CTTCACATGGACACACATG---------- >LTR7d2_chr2_192506079_192513182_2305_ZNF534_ZNF90_KAP1_EncodeTxn_NANOG_GRO5of7_GRO6of7_GRO7of7_7down____chr2_192506079192506490____1410 -GTCAGGCCTCTGAGCCTAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACA TACATATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCTTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTGC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCTCCACC--TGCCTGCCAGAAAACAACCC CCT-T----------TTTTCCTTTATCTACCTA-AATCCTATAA-----------AACA- GCCCCACCC-T-T-ATCTCCCTTTGCTGATTCTCTTTTTGGACTCAGCCCAGCTGCACCC ATGTGA-----AA--TAAACAGCCATATTGCTCACACAAAGCCTG--TTT--GGTAGTCT CTTCACATGGACACACATGA--------- >LTR7d2_chr4_162709182_162714747_3186_ZNF534_ZNF90_KAP1_EncodeRepressed_NANOG_GRO3of7_7down____chr4_162709182162709583____1401 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGAC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTACACCACAAAAGAAGTGAAAATGGCCTGTTTC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCAAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TAACTTGTG-------------- ---------------------------AT-CCCCACTC--TGCCTGCCAGAGAACAACCC CCC-T----------TTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTTCCTTTGCTGACTCTCTTTTTGGACTTGGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGCACATGA--------- >LTR7d2_chr2_83788947_83794480_3229_KAP1_EncodeTxn_C_7down___chr2_8379407383794480___1406 TGTCAGGCCTCTGAGCTCAAG-----------------------CTAAGCCATCATA-CC CCTGTGAC---------------------------------------------CTGCACG TACGCATCGAGA------------------------------------------------ -----------------------------TGGCT-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAT ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAG--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACCTTGTG-------------- ---------------------------AC-CCCCACTC--TGCCCGCCAGAGAACAACCC CCT-TT-GACTGTAATTTTCCTTTACC-ACCCA-AATTCTATAA-----------AACG- GCCCCACCC-C---ATTTCCCTTCGCTGACTCTCTTTTTGGACTCAGCTCGCCTGCACCG AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGCACATG---------- >LTR7d2_chr6_160286611_160292314_4763_ZNF534_KAP1_EncodeRepressed_NANOG_GRO4of7_C_7down___chr6_160291913160292314___1399 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCATG TACACATCCAGA------------------------------------------------ -----------------------------TGACC-------------------------- ------------------GGTTCCCGCCTTAACTGGT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CGGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACCTTGTG-------------- ---------------------------AC-CCCCACTC--TGCCCGCCAGAGGACAACCC CCC-TT----------TTTCCTTTACCTACGCA-AATCCTATAA-----------AATG- GCCCCACCC-C---ATTTCTCTTTGCTGACTCTCTTTTCGGACGCAGGCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGCACATG---------- >LTR7d2_chr1_216008143216013869_3371_ZNF534_KAP1_EncodeRepressed_GRO2of7__chr1_216008143216008553____1409 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGCT----------------------- ---GACATTCCACCATGAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACCTTGTG-------------- ---------------------------AC-CCCCACTC--TGGCCTCCAGAGAACAACCC CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C---ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACTTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGCACATGA--------- >LTR7d2_chr3_8113870_8114282_weakenh_SOLO_NANOG_7down____chr3_81138708114282____1410 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCACATCC CCTGTAAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGATC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------AC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AT-CCCCACTC--TGCCCGCCAGAGAACAACCC ACC-CTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AATG- GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACTC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCACATGA--------- >LTR7d2_chr3_8177031_8182716_4543_ZNF534_EncodeRepressed_7down____chr3_81770318177441____1410 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACCTTGTG-------------- ---------------------------AC-CCCCACTC--TGCGTGCCAGAGAACAACCC CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GATCCACCC-C-T-ATCTCCCTGCGCTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCAAACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACATGCATGA--------- >LTR7d2_chr19_52484546_52484943_h3k27ac_EncodeTxn_SOLO_NANOG_chimeric_7down____chr19_5248454652484943____1397 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCGTATAC CCTGTGAC---------------------------------------------CTGCACA TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACCTTGTG-------------- ---------------------------AC-CCCCACTC--TGCCCGCCAGAGAACAACCC CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCACTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCCAACAAAGCCTG--TTT--GGTGGTCT CTTCACA---------------------- >LTR7d2_chr4_9730530_9730938_EncodeTxn_SOLO_C_7down___chr4_97305309730938___1408 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCA CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGG------------------------------------------------ -----------------------------TGGCT-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCTCCACAAAAGAAATGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AACCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACCTTGTG-------------- ---------------------------AC-CCCCACTC--TGCCCGCCAGAGAACAACGC CCC-T----------TTTTCCCTTACCTACCCA-AATCCTATAA-----------AACG- GTCCCACCC-C---ATCTCCCTTCACTGACTCTCTTT-CAGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGCACATG---------- >LTR7d2_chr11_67759685_67765364_4338_ZNF534_k27ac_EncodeTxn_NANOG_GRO4of7_7down____chr11_6775968567760095____1399 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CCGCACA TACACATCCAGA------------------------------------------------ -----------------------------TGGCT-------------------------- ------------------GGTTCCTGCCTTAAGTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AACCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACCTTGTG-------------- ---------------------------AC-CCCCACTC--TGCCCACCAGAGAACAACTC CCC-C----------TTTTCCTTTACCTACCCA-AATCCTATAA-----------AACA- GCCCCACCC-C---ATCTCCCTTCACTGACTCTCTTTTCAGACTCAGCCCCCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACATAAAGCCTG--TTT--GGTGGTCT CTTCACACGGATGCGCATGA--------- >LTR7d2_chrY_21037652_21038057_SOLO_7down____chrY_2103765221038057____1399 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCT-------------------------- ------------------GGTTCCTGCCTTAACCGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CT----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC---------T--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AATCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACCTTGTG-------------- ---------------------------AC-CCCCACTC--TGTCTGCCAGAGAACAACCC CCT-T----------TTATCCTTTACCTACCCA-AATCCTATAA-----------AATG- GCCCCACCC-C---ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCTCCTGCACCC AGGTGT-----AA--TAAACAGCCATGTTACTCACACAAAGCGTG--TTT--GGTGGTCT CTTCACATGGACGCGCATGA--------- >LTR7d2_chr3_40560896_40566678_3079_ZNF534_ZNF90_KAP1_EncodeRepressed_7down____chr3_4056089640561296____1398 -GTCAGACTTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TCGCT-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------AT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCCAGCTCAA--AAGCTCCTCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACCTTGTG-------------- ---------------------------AC-CCCCACTC--TGCCTGCCAGAGAACAACAC CCC-T----------TTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C---ATCTCCCTTCACTGACTCT--TTTCGGACTCAGCCTGCCTGCACCC AGGTGA-----AA--TAAACAGCCACGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGATGCGCATGA--------- >LTR7d2_chr17_70723947_70724348_EncodeRepressed_SOLO_C_7down___chr17_7072394770724348___1399 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------GTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TCGCG-------------------------- ------------------GGTTCCTGCCTTAACTAAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ACT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------AAG----TACCTTGTG-------------- ---------------------------AC-CCCCACTC--TGCCCGCCAGAGAACAAGCC CCC-T----------TT-TCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C---ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCAGCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAGGTCTG--TTT--GGTGGTCT CTTCACATGGACGCGCATG---------- >LTR7d2_chr6_16885985_16891647_4516_ZNF534_KAP1_EncodeTxn_NANOG_7down____chr6_1688598516886384____1399 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------CGGCC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTTC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ACT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACCTTGTG-------------- ---------------------------AC-CCCCACTC--TGCCCACCACAGAACAACTC CCC-T----------TTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C---ATCTCCCTTCACTGACTCT--TTTCGGACTCAGCCCGCCTGCACCC AAGTGA-----AA--TAAGCAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACAAGGACGCGCATGA--------- >LTR7d2_chr2_82398275_82398685_EncodeRepressed_SOLO_NANOG_C_7down___chr2_8239827582398685___1400 TGTCAGGTCTCTGAGCCCGAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ACT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GCC--------TT--GTGACATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACCTTGTG-------------- ---------------------------AC-CCCCACT---TGCCCACCAGAGAACAACTC CCC-T----------TTCTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C---GTCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGCGCATG---------- >LTR7d2_chr18_64681731_64687323_3105_ZNF534_EncodeRepressed_7down____chr18_6468173164682131____1400 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAA---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTAAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCTCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACCTTGTG-------------- ---------------------------AC-CCCGACTC--TGCCCGCCAGAGAACAACCC CCC-T----------TTTTCCTTTACCTACCCA-AATCCTGTAA-----------AACG- GCCCCACCC-C---ATCTCCCTTCACTGACTTTCTTTTTGGACTCAGCTCGCCCGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCTTG--TTT--GGTGGTCT CTTCACACGGACGCGCATGA--------- >LTR7d2_chr1_230018264_230018664_h3k27ac_weakenh_SOLO_NANOG_7down____chr1_230018264230018664____1399 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGAAGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACCTTGTG-------------- ---------------------------AC-CCCCAC-C--TGCCCGCCAGAGAACAACCC CCC-T----------TTTCCCTTTACCTTCCCA-AATCCTATAA-----------AACA- GCCCCAGCC-C---ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AG--TAAACAGCCATGTTGCTCACACAAAGCCTC--TTT--GGTGGTCT CTTCACACGGACACACATGA--------- >LTR7d2_chr3_54656900_54657297_EncodeTxn_SOLO_C_7down___chr3_5465690054657297___1394 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------CCGCG-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAA---GTGAAAATGGCCTATTCC------------------- ------------TG------------------CC----------TTAA----CTGAAGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACCCTGTG-------------- ---------------------------AC-CCCCACTC--TGCCCGCCAGAGAACAACCC CCC-T----------TTT-CCTTTACCTACCCA-AATCCTATAA-----------AACA- GCCCCACCC-C---ATCTCCCTTGGCTGAC--TCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTTT CTTCACACGGACGCGCATG---------- >LTR7d2_chr5_101315240_101320597_2892_ZNF534_EncodeRepressed_7down____chr5_101315240101315641____1400 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATTC CCTGTGAC---------------------------------------------CTGGACA TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GATATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCCCCCCCAT--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------GAG----TACCTTGTG-------------- ---------------------------AC-CCCCACTC--TGCCCGCCAGAGAACAACCC CCC-T----------TTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C---ATCTCTCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGACGCGCATGA--------- >LTR7d2_chr2_58314169_58319388_2025_ZNF534_KAP1_EncodeRepressed_GRO3of7_7down____chr2_5831416958314565____1387 -GTCAGGCCTCTGAGCCCAAG-----------------------GTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTAGACA TACACATCCAGA------------------------------------------------ -----------------------------TCGCC-------------------------- -------------------------------ACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ACT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACCTTGTG-------------- ---------------------------AC-CCCCACTC--TGCCCACCAGAGAACAACAC CCC-T----------TTTTCCTTTACCTACCCA-AATCCTATAA-----------AATG- GCCCCACCC-C---ATCTCCCTTCGCTGATTCTCTTTTCGGACTCAGTCTGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTC--GGTGGTCT CTTCACACAGACGCGCATGA--------- >LTR7d2_chr6_130192311_130198222_4778_ZNF534_ZNF90_KAP1_EncodeTxn_7down____chr6_130192311130192710____1399 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATTC CCTGTGAC---------------------------------------------CTGCACA TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTTCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGTCCTGTTCC------------------- ------------TG------------------CT----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACCTTGTG-------------- ---------------------------AC-CCCCACTC--TGCCCACCAGAGAACAACCC CCC-T----------TTTTCCTTTACCTTCCCA-AATCCTATAA-----------AATG- GCCCCACCC-C---ATCTCCCTTCGCTGACTCTCTTTTTGGACTCAGCC-ACCAGCACCC AGGTAA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGTCGCGCATGA--------- >LTR7d2_chr18_3180378331810056_4313_ZNF534_KAP1_EncodeRepressed_NANOG_GRO2of7__chr18_3180378331804182____1399 -GTCACGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACA TACACATCCAGA------------------------------------------------ -----------------------------TGGTC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACCTTGTG-------------- ---------------------------AC-CCCCACTC--TGCCCGCCAGAGAACAACCC CCC-T----------TTTTCCTTTACCTACCCA-AATCCTATAA-----------AACA- GCCCCACCC-----ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GATGGTCT CTTCACACGGACGCGCATGA--------- >LTR7d2_chr11_15365096_15365507_EncodeTxn_SOLO_C_7down___chr11_1536509615365507___1399 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATAATC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TCGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATAAC ACT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TG--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACCTTGTG-------------- ---------------------------AC-CCACACTC--TGCCCGCCAGAGAATAACCC CCC-T----------TTTTCCTTTACCTACCCA-CATTCTATAA-----------AACG- GCCCTACCC-C---ATCTCCCTTAGCTGACTCTCTTTTCAGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAACCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACTCGCATG---------- >LTR7d2_chr7_83833685_83834091_h3k27ac_TSS_SOLO_NANOG_SMAD11_C_7down___chr7_8383368583834091___1400 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATAC CCTGTGAC---------------------------------------------CTGCACT TACACATCCAGA------------------------------------------------ -----------------------------TCCCC-------------------------- ------------------GGTTCCTGCCTTCACTGAT----------------------- ---GACATTCCACCACGAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACCTCGTG-------------- ---------------------------AC-CCCCACTC--TGCCTGCCAGAGAACACACC CCC-T----------TTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C---ATCTCCCTTCACTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGTTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATG---------- >LTR7d2_chr2_98421606_98422016_EncodeTxn_SOLO_7down____chr2_9842160698422016____1399 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATTATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TCTCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAC----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACCTTGTG-------------- ---------------------------AC-CCCCACTC--TGCCTGCCAGAGAACAACCC CCC-T----------TTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C---ATCTCCCTTCGCTGTCTCTCTTTTGGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TAT--GGTGGTCT CTTCACACGGACGCGCATGA--------- >LTR7d2_chrX_12939865_12945537_3325_ZNF534_ZNF90_KAP1_EncodeRepressed_NANOG_GRO3of7_7down____chrX_1293986512940276____1410 -GTCAGGCCTCTGAGCTCAAG-----------------------CTAAGCCATCATATCC CCTGTGAT---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCT-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCG------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAATTC CC--TTTGACTGTAATTTTCCTTTATCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTTGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACAGGGACACGCATGA--------- >LTR7d2_chr11_119649893_119650304_weakenh_SOLO_NANOG_SMAD11_C_7down___chr11_119649893119650304___1410 TGTCAAGCCTCTGAGCCCAGG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCCGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACCTTGTG-------------- ---------------------------AC-CCCCACTCT-TGCCCGCCAGATAACAACCC CC--TTTGACTGTAATTTTCCTTTATCTACCCA-AATCTTATAA-----------AATG- GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTTGGACTCAGCCCTCCTGCACCC AGGTGA-----AA--TAAAAAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACACACATG---------- >LTR7d2_chr8_144953919_144959998_5744_ZNF534_ZNF90_KAP1_EncodeRepressed_NANOG_GRO5of7_GRO6of7_GRO7of7_C_7down___chr8_144959589144959998___1408 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAA-CC CCC-TTTGACTGTAATTTTCCTTTAACTACCCA-AATATTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCACTGA--CTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACTTGGACGTGCATG---------- >LTR7d2_chr3_170672177_170678262_5703_ZNF534_ZNF90_KAP1_EncodeTxn_GRO4of7_C_7down___chr3_170677851170678262___1410 TGTCAGGGCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC TCTGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CG----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAA----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAA-CT CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG- GCCCCACCC-C-T-GTCTCCTTTCACTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACACGCATG---------- >LTR7d2_chr6_109855775_109861579_3393_ZNF534_ZNF90_KAP1_EncodeTxn_C_7down___chr6_109861168109861579___1411 TGTCAGGCCTCTGAGCCCAAG-----------------------CTGAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTACTTCTCCTGG-------------- ----TTAATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCCTGTG-------------- ---------------------------AC-CCCCACTCC-TGCTCACCAGAGAACAAACC CCC-TTTGACTGTAATTTTCCTTTACCTGCCCA-AATCTTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGCGGTCT CTTCACACGGACGCGCATG---------- >LTR7d2_chr10_20119204_20124934_4521_ZNF534_ZNF90_KAP1_EncodeTxn_GRO1of7_C_7down___chr10_2012453420124934___1399 TGTCAGGCCTCTGAGCCCAAG-----------------------CTGAGCCATGATATTC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC AAT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-CC CCC-T----------TTTTCCTTCACCTATCCA-AATCCTATAA-----------AACG- GCCCCACCC-C---ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACTCAGACGCAGG------------ >LTR7d2_chr3_20967541_20973231_4394_ZNF534_EncodeTxn_GRO5of7_GRO6of7_GRO7of7_C_7down___chr3_2097282020973231___1408 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------AGTTCCTGCCCTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATC--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAA-CC CCC-TGTGACTATAATTTTCCTTTATCTACCCA-AATCCTATAA-----------AACG- ACCCCACCC-C---ATCTCCCTCTGCTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGATGCATG------------ >LTR7d2_chr4_117252107_117257788_4433_ZNF534_KAP1_EncodeRepressed_GRO3of7_7down____chr4_117252107117252508____1401 -GTCAGGCCTCTGAACCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCT-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------AAG----TACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACGA-CC CCC------CT----TTTTCCTTTACCTACCCA-AATCCTATAA-----------AAAG- GCCCCACCT-C---ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--TGTGGTCT CTTCACACAGACGCATGTGA--------- >LTR7d2_chr11_56059270_56059680_h3k27ac_EncodeRepressed_SOLO_C_7down___chr11_5605927056059680___1408 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCCTATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTATTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAA-CC CCC-TTCGACTGTAATTTTCCTTTCTCTACCCA-AATCGTATAA-----------AATG- GCCCCACCC-T---ATCTTCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTTGTCT CTTCACACAGACACATG------------ >LTR7d2_chr15_52738558_52745204_5956_ZNF534_KAP1_EncodeRepressed_NANOG_GRO1of7_7down____chr15_5273855852738987____1409 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TCGCC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCTCCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCAAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACCTTGTG-------------- ---------------------------AC-CCCCACT-C-TGCCCACCAGAGAACAACCC CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AATG- GCCCCACCC-C---ATCTCCCTTCGCTGACTCTCTCTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAACCTG--TTT--GGTGGTCT CTTCATGCTGACGCAAGTGA--------- >LTR7d2_chr10_45045463_45045865_SOLO_C_7down___chr10_4504546345045865___1402 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCTAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAAAGAAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTTTCCTGG-------------- ----CTCATCCTCACTCA---AAGCTCCCC------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ -------------------------------------TACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAACCC CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AATG- GCCCCACCC-C---ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGACGCGAGTG---------- >LTR7d2_chr11_83442184_83448545_3188_ZNF534_ZNF90_KAP1_EncodeTxn_C_7down___chr11_8344818683448545___1359 TGTCAGGCCTCTGAGTCCAAG-----------------------CTAAGCCATCATATCC CCTGTTAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---GACA----------------------------------------------------- ------------------------------------------------------------ -CT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TG--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACCTTGTG-------------- ---------------------------AC-CCCCACTAC-TGCCCATCAGAGAACAACCC CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AACCTTATAA-----------AATG- GCCCCACCC-C---ATCTCCCTTCACTGACTCTCTTTTCAGACTCAGCCCGCCTACACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACAGAAAGCCTG--TTT--GGTGGTCT GTTCACACGGACACGAGTG---------- >LTR7d2_chr5_161248409_161255013_3138_ZNF534_KAP1_EncodeTxn_7down____chr5_161248409161248819____1406 ---CAGGCCCCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCAGG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--CTGAAATTCCTT---CTGG-------------- ----CTCATCCTGGTTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACCTTGTG-------------- ---------------------------AC-CCCCACCCC-TGCCCATCAGAGAACAACCC CCC-TTTGATTGTAATTTTACTTTACCTACCCA-AATCTTATAA-----------AATG- GGCCCACCC-C---ATCTCCCTTCACTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC AGGTGA-----AA--CAAACAGCCTTGTTGATCACACAAAGCCTG--TTT--GGTGGTCG CTTCACATGGACGTGAGTGA--------- >LTR7d2_chr2_237606784237612654_3356_ZNF534_ZNF90_KAP1_EncodeRepressed_GRO2of7__chr2_237606784237607195____1411 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACA TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GCC--------TT--GTGAAATTCTTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCTCCTC-TGCCCACCAGAGAACAACCC CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AATG- GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTCAGACTCAGCCCACCTGCACCC ATGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGCTCATGA--------- >LTR7d2_chr9_22658527_22664062_3090_1_EncodeTxn_C_7down___chr9_2266366022664062___1400 TGTCAGGCCTCTAAGCCCAAG-----------------------CTAAGCCATCATAAAC CCTGTGAC---------------------------------------------CTGCACA TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTAATGAC ACT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCTTTCTCCTGG-------------- ----CTCTTCCTGGCTCAA--AAGCTCCCCTAA--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCC-TACTC-CTCCAACCAGAGAACAACCC CCC-TT----------TTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACTC-C-T-ATCTCCCTTTGCTGACTCCCTTTTCAGACTCCCTTCACCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTGACATGGACGCGCATG---------- >LTR7d2_chrY_6139215_6144893_4289_KAP1_7down____chrY_61392156139624____1409 -GTCAGGCCTCTGAGCCTAAG-----------------------CTAAGCCATCATAACT CCTGTGAC---------------------------------------------CTGCACT TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGTCCTGTTCC------------------- ------------TG------------------TC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATTCTGGCTCAA--AAGCTCCACTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCAC-TC-TGCCTGCCAGAGAACAAC-C CCG-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACA- ACCCCACCC-C-T-ATCTTCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAGACAGCTTTATTGGTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGTGCATGA--------- >LTR7d2_chrX_93022959_93028634_4479_ZNF534_KAP1_EncodeRepressed_GRO4of7_7down____chrX_9302295993023368____1409 -GTCAGGCCTCTGAGCCTAAG-----------------------CTAAGCCATCATATTT CCTGTGAC---------------------------------------------CTGCGCT TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGTCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCACTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCAC-TC-TGCCTGCCAGAGAACAAC-C CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- ACCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCAGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAGACAGCTTTATTGGTCACACAAAGCCTG--TTT--GGTGGTCT CTTCATATGGACGTGCATGA--------- >LTR7d2_chr8_103645854_103646263_enh_SOLO_NANOG_C_7down___chr8_103645854103646263___1409 --TCAGGCCTCTGAGCCCAAG-----------------------TTAAGCCATCATATCC CCTGTGGC---------------------------------------------CTGCTCC TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGTCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTGC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACTTTGTG-------------- ---------------------------AA-CCCCACAAC-TGCCCACCAGAGAACAACCC CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACA- GCCCCACCC-G-T-ATCTCCCTTCACTGACTCTCTTTTCAGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCTTTATTGCTCACAGAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGTGTATG---------- >LTR7d2_chr2_140426394_140432402_3077_1_EncodeRepressed_NANOG_GRO4of7_7down____chr2_140426394140426801____1407 ---CAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCATT TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--CTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTTCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACATC-TGCCTGCCAGAGAACAACCC CTC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACA- GCCCCACCC-A-T-ATCTTCCTTCGCTGAC--TCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGTGCATGA--------- >LTR7d2_chr2_35818373_35818777_EncodeRepressed_SOLO_NANOG_7down____chr2_3581837335818777____1404 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCAGG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACATAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTT---CTGG-------------- ----CCCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAAATC CCC-TTTGACTGTAATTTTCCTTTAC----CCA-AATCCTATAA-----------ATTG- GCCCCATCC-C-T-ATCTCCCTTCCCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGTGCATGA--------- >LTR7d2_chr6_80509796_80515803_2811_KAP1_EncodeTxn_NANOG_GRO5of7_GRO6of7_GRO7of7_C_7down___chr6_8051539380515803___1410 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCATG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---GATATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----TTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACACC-TGCCCGCCAGAGAATAA-CC CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AATG- GCCCCACCC-C-T-ATCTCCCTTCCCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC ACATGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTTACATGGACACACATG---------- >LTR7d2_chr10_89329769_89330178_EncodeTxn_SOLO_C_7down___chr10_8932976989330178___1409 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC --TGTGAC---------------------------------------------CTGCATG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CCGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACACC-TGCCCACCAGAGAACAACCC CCC-TTTGACAGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AATG- GCCCCACCC-C-T-ATCTCCCTTCCCTGACTTTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACTTGCATG---------- >LTR7d2_chr5_98752537_98752948_h3k27ac_enh_SOLO_NANOG_C_7down___chr5_9875253798752948___1411 TGTCAGACCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCAGG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CCGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCAACACC-TGCCCGCCAGAGAACAACCC CCC-TTTGACTGTAATTTTCCTTTACCTATCCA-AATCCTATAA-----------AACT- TCCCTACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CATCTCACGGACGTGCATG---------- >LTR7d2_chr12_44450052_44456067_3051_1_EncodeTxn_GRO3of7_7down____chr12_4445005244450463____1407 -GTCAGGCTTCTGAGTCCAAG-----------------------CTAAGCCATCATAGCC CCTGTGAC---------------------------------------------CTGCACA TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---GACATTCTACCACAAAAGAAGTGAAAATGGCCAATTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCAACACC-TGCCCACCAGAGAACGACCC CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AATG- GCCCCACCC-C-T-ATCTCTCTTTGCTG----TCTTTTCGGACTCAGCCCACCTTTACCC GGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGATGTGCATGA--------- >LTR7d2_chr3_178207403_178207808_h3k27ac_EncodeTxn_SOLO_7down____chr3_178207403178207808____1405 -GTCAGGCTTCTGAGCCCAAG-----------------------ATAAGCCATCACATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTAATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTATG-------------- ---------------------------AC-CCCCACACC-TGCCTGCCAGAGAACCACCC CAC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------ATT-- GCCCCACCC-C-T-ATCTCCCTTTGCTGCCTCTCTTTTCGGACTCAGCCCACCTGGACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACACG-------------- >LTR7d2_chr18_35356140_35361791_2942_ZNF90_KAP1_EncodeRepressed_GRO3of7_C_7down___chr18_3536138435361791___1407 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCT CCTGTGAC---------------------------------------------CTGCATG TACACATCCAGA------------------------------------------------ -----------------------------TGACT-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAATAAGTGAAAATGACCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC AAT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCT----GAGAACAACCC CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AATG- GCCCCGCCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGTCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCATATGGACGCGCATG---------- >LTR7d2_chr9_75351145_75357575_3057_ZNF534_KAP1_EncodeRepressed_GRO5of7_GRO6of7_GRO7of7_C_7down___chr9_7535716475357575___1411 TGTCAGATCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTTCATG TACACATCCAGA------------------------------------------------ -----------------------------TGGCT-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GTCATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCACCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAA----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAACCC CCG-TTTGACTGTAATTTTCCTTTACCTACACA-AATCTTATAA-----------AACA- GCCCCACCC-C-T-ATCTCCCTTCACTGATTCTCTTTTCAGACTCAGCCTGCCTGCACCC AAGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCAAATGGACACACATG---------- >LTR7d2_chr3_146353817_146359463_2887_KAP1_EncodeTxn_GRO5of7_GRO6of7_GRO7of7_7down____chr3_146353817146354226____1407 ---CAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACA TACACATCCAGA------------------------------------------------ -----------------------------TGGCT-------------------------- ------------------GGTTCCTGCCTTAGCTGAT----------------------- ---GACATTCCACCACAGAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCATCAGAGAACAACCC C---TTTGACTGTAATTTTCCTTTACCTATCCA-AATCCTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTTTCTGACTCTCTTTTCAGACTCAGTCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCAAACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGATGCACATGA--------- >LTR7d2_chr20_38592396_38598799_2915_ZNF534_KAP1_EncodeRepressed_NANOG_C_7down___chr20_3859838838598799___1409 TGTCAGGCCTCTGAGCCCAAG-----------------------CTTAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCT-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAT ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCGGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-TCCCACTCC-TGCCCGCCAGAGAACAACCC C---TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTCGGATTCAGCCTGCCTGCATCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGATGCACATG---------- >LTR7d2_chr9_122535746_122536148_EncodeRepressed_SOLO_C_7down___chr9_122535746122536148___1399 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCT-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTCA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAACCC C---TTT----------TTCCTTTACCTACCCA-AATCTTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCCCTTTTCCGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACATGAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCACATG---------- >LTR7d2_chr8_128914459_128920320_3249_ZNF534_ZNF90_KAP1_EncodeTxn_GRO1of7_7down____chr8_128914459128914868____1408 -GTCAGGCCTCTGAGCCCAAA-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCA-------------------------- ------------------GGTTCCTGCCTTAACTAAT----------------------- ---GACATTCCACCACAAAAGAAATGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAACTTCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGA---ACCC CCT-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AATG- GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCAGACAAAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGTCTG--TTT--GGTGGTCT CTTCACACGGACATGCATGA--------- >LTR7d2_chr4_179720525179726896_3376_ZNF534_KAP1_EncodeRepressed_GRO2of7__chr4_179720525179720933____1407 -GTCAGGCCTCTGAGCCCAAG-----------------------TGAAGCCATCATATCC CCTGTGGC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AATCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTA-------------- ---------------------------AC-CCCCACTC--TGCCCACCAGAGA---ACCC CCA-TTTGACTGTAATTTTCCATTACCTTCCCA-AATCTTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCTACCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGTCTG--TTT--AATGGTCT CTTCACATGGACACACATGA--------- >LTR7d1_chr17_57017124_57017526_enh_SOLO_7down____chr17_5701712457017526____1401 -GTCAAGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTATGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAATGAAAATGGCCTGTTAC------------------- ------------TG------------------CC----------TTAA----CTGATGGC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAACCC CCC-TTT----------TTCCTTTACCTACCCA-AATCCTATGA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGACGCGAGTGA--------- >LTR7d2_chr6_1875414418759870_3389_ZNF534_k4me3_EncodeTxn_wangmod_GRO2of7__chr6_1875948018759870___1390 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCATG TACACATCCGGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GATTCCTGCCTTAATTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGACTGTTCC------------------- ------------TG------------------CC----------TTAA----CGGATGGC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCA----------A--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAACCC CCC-TTT----------T-CCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAATAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGATGCACATG---------- >LTR7d2_chr12_80783123_80788892_3404_ZNF534_EncodeTxn_chimeric_C_7down___chr12_8078848880788892___1400 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGCCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CGGATGGT ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAAAAAACAACCC CCC-TTT----------T-CCTTTACCTATCCA-AATCCTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTCGAACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCATACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATG---------- >LTR7d2_chr14_4825519948260940_3297_ZNF534_k27ac_TSS_NANOG_wanghigh_GRO2of7__chr14_4826054148260940___1399 TGTCAGGCCTCTGGGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCT-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GGCATTCCACCACAAAAGAAATGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGGC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCTTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCTACTCC-TGTCTGCCAGAGAACAACCC CCC-TTT----------TTCCTTTATGTACCCA-AATCTTATAA-----------AACA- GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTT--CGGACTCGGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGATGTGAGTG---------- >LTR7d2_chr8_90589149065195_4610_ZNF534_KAP1_EncodeTxn_GRO2of7__chr8_90647949065195___1401 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGGC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTAAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TTCCTGCCAGAGAACAACCC CGC-TTT----------TTCCTTTACTTACCCA-AATCCTATAA-----------AACA- GCCCCACCC-C-T-GTCTCCCTTCGCTGACTCTCTTCTCGGACTCAGCCCGCTTGCACCC AGGTGA-----AA--TAAACAGCCCTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGATGCGCATG---------- >LTR7d2_chr15_62296471_62296867_TSS_SOLO_NANOG_SMAD11_7down____chr15_6229647162296867____1396 -GTCAGGCCTCTGAGCCGAAG-----------------------CTAAACCATCATATCC CCTGTGAC---------------------------------------------CTGCACA TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAATGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-CGCCTGCCAGAGAACAACCC CCC-TTT----------TTCCTTTACCTACCCA-AATCCTATGA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCTTTATTGCTCACGCAAAGCCTG--TTT--GGTGGTCT CTTCACACGGATGCG-------------- >LTR7d2_chr1_239030861_239031261_EncodeTxn_SOLO_NANOG_7down____chr1_239030861239031261____1400 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAATGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGGC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AGGCTCCCATAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAACTC CCC-TTT----------TTCCTTTACCTACCCA-AATCCTATAA-----------AACA- GCCCCACCC-C-T-GTCTCCCTTTGCTGACTCTCTTTTCGAACTCAGCCTGCCTACACCC AGGTGA-----AA--TAAACAGCTTTATCGCTCACGCAAAGCCTG--TTT--GGTGGTCT CTTCCCATGGATGCGCATG---------- >LTR7d2_chr9_2528817625294101_3195_1_EncodeTxn_wangmod_GRO2of7__chr9_2528817625288591____1399 ---CAGGCGTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CTTGTGAC---------------------------------------------TTGCATG TACACATCCAGA------------------------------------------------ -----------------------------TGGCA-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAATGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATAAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--ACCCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAACAC CCC-TTT----------TTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C-T-ATTTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTTCCCCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACACGCATGA--------- >LTR7d2_chr4_130767409_130773268_3284_ZNF534_KAP1_k27ac_weakenh_NANOG_GRO1of7_7down____chr4_130767409130767810____1401 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCAAG TACACATCCAGA------------------------------------------------ -----------------------------TGGCT-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAATGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGGC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GCGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTCGTG-------------- ---------------------------AC-CCCCACTAC-TGCCTGCCAGAGAACAACCC CCC-TTT----------TTCCTTAACCTACCCA-AATCCTATAT-----------AACG- GCCCCACTC-C-T-ATCTCCCTTCGCTGACTCTGTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTTTTGCTCACACAAAGCCTG--TTT--GGTGATCT CGTCACATGGACGCGCATGA--------- >LTR7d2_chr4_11653569_11659254_3136_1_EncodeTxn_GRO5of7_GRO6of7_GRO7of7_C_7down___chr4_1165885911659254___1395 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCATG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------TGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAATGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCTTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCC------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAAC--CCC CC--TTT----------TTCCTTTACCTACACA-AATCCTATAA-----------AACG- GCCCCACAC-C-T-ATCTCCCTTAGCTGACTCTCTTTTCAGGCTCAGCCCGCCTGCACCC AGGTAA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCACATG---------- >LTR7d2_chr7_120776623_120782885_4490_ZNF534_EncodeTxn_GRO5of7_GRO6of7_GRO7of7_C_7down___chr7_120782486120782885___1399 -GTCAGGCCTCTGAGCCTAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCATG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTGC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCATTCC-TGCCCGCCAGAGAAAAACCC CC--TTT----------TTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTAGCTGACTCTCTTTTCGGACTCAGCTCGCCTGTACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTA--TTT--GGTGGTCT CTTCACACAGACGCGCATG---------- >LTR7d2_chr3_45313431_45313830_h3k27ac_enh_SOLO_NANOG_C_7down___chr3_4531343145313830___1398 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATTCAGA------------------------------------------------ -----------------------------TGGCT-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-CGCCTGCCAGAGAAC---CC CCC-TTT----------TTCCTTTACCTACTCA-AATCCTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTCGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATG---------- >LTR7d2_chr6_138329818_138330218_h3k27ac_weakenh_SOLO_C_7down___chr6_138329818138330218___1400 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATGTCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCT-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CT-ATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAACCC CCC-TTT----------TTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCTGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGACGTGCATG---------- >LTR7d2_chr9_25668929_25675217_4348_ZNF534_EncodeTxn_wangmod_7down____chr9_2566892925669329____1400 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------AGTTCCTGCCTCAACTGAT----------------------- ---GACATTCCACCACAAAACAGGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CTCCTTGTG-------------- ---------------------------A--CCCCACTCC-TGCCTGCCAGAGAACAATCC CCC-TTT----------TTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-G-T-ATCTCCCTTCAATGATTCTCTTTTCGGACTCAGCCTGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGCTGCTCACACAAAGCCTT--TTT--GGTGGTCT CTTCACACCGAAGCGCATGA--------- >LTR7d2_chr2_37205224_37205635_h3k27ac_enh_SOLO_NANOG_44108_SMAD11_7down____chr2_3720522437205635____1401 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG CACACATCCAGA------------------------------------------------ -----------------------------TGGTC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCAGGCAGAGAACAACCC CCT-TTT----------TCCTTTTTTCTACCCA-AATCCTATAA-----------AATG- GCCCCACCC-C-T-ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAGCAGCCTTGTTGCTCATGCAAAGCCTG--TTT--GGTGGTCT CTTCATACAGACGCGCATGA--------- >LTR7d2_chr5_40252645_40253046_EncodeRepressed_SOLO_C_7down___chr5_4025264540253046___1401 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGTC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCT-------------------------- ------------------GGTTCCTGCCTTTACTGAT----------------------- ---GACATTCCACCACAGAAGAAATGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAACCC CCC-TTT----------TCCCTTTATCTACCCA-AATCCTATAA-----------AATG- GCCCCACCC-C-T-ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGTCCACCTGCACCC AGGTGA-----AA--TAAAAAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATG---------- >LTR7d2_chr3_61692473_61692874_enh_SOLO_NANOG_C_7down___chr3_6169247361692874___1401 TGTCAGGCCTATGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAATGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCT-TGCCTGCCAGAGAACAACCC CCG-TTT----------TTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C-T-ACCTCGCCTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGTACCC AGGTGA-----AA--TAAACAGCCTTGCTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATG---------- >LTR7d2_chr4_186044023_186049672_3037_ZNF90_KAP1_EncodeTxn_chimeric_GRO4of7_C_7down___chr4_186049275186049672___1397 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACGTTCCACCACAAAATAAATGAAAATGGCCTGTTTC------------------- ------------TG------------------CC----------TTAA----CTGATGAT TTT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCTGCCGGAGAACAACCC CTC-TTT----------TTCCTTTATCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCG----CTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACACACATG---------- >LTR7d2_chr7_22703358_22709313_4710_ZNF534_k4me3_enh_NANOG_chimeric_GRO1of7_7down____chr7_2270335822703765____1407 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCATA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTCGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCGACAGAGAACAACCC CTT-TTT----------TTCCTTTACCTACCCA-GATCCTATAA-----------AATG- GCCCCACCC-C-C-ATCTCCCTTTGCTGACTCTCTT--CGAACTCAGCCTGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCACATGA--------- >LTR7d1_chr14_61133252_61139160_4641_ZNF534_ZNF90_KAP1_EncodeTxn_GRO4of7_C_7down___chr14_6113875761139160___1398 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATTATATCC CCTGTGAC---------------------------------------------CTTCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGTC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAATGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAG ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTAAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCAACTCC-TGCCTGCCAGAGA---ACCC CCC-TTT----------TTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTAGCTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--AGTGGTCT CTTCACGTGGACACGAGTG---------- >LTR7d1_chr12_73001848_73007727_1993_ZNF534_EncodeRepressed_NANOG_GRO3of7_C_7down___chr12_7300731773007727___1410 TGTCAGGCCTCTGAGCCCAAA-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACA TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAAAGAAAACGGCCTGTTTC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAACCC CCC-TTTGACTGTAATTTTTGTTTACCTACCCA-AATCCTATAA-----------AATG- GCCCCACCC-C---ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAATAGCCTTGTTGCTCACACAAAGACTG--TTT--GGTGGTCT CTTCACATGGACACGAGTG---------- >LTR7d1_chr6_80647676_80653384_1757_ZNF534_EncodeRepressed_C_7down___chr6_8065298380653384___1401 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATTATATCC CCTGTGAC---------------------------------------------CTGCATG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGTTCAA--AAGCTCCCCCGC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCAACCC-TGCCCGCCAGAGAACAATCC CCC-TT----------TTTCCTTTACCTACCCA-AATCTTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCTTG--TTT--GGTGGTCT CTTCACACAGACATGCATG---------- >LTR7d2_chr10_1349016_1354570_2706_1_EncodeTxn_GRO4of7_7down____chr10_13490161349420____1400 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCAGG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------AGTTTCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--ATGAACGTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTGC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC--CCCACCCC-TGCCTGCCAGAGAACAACCC CCC-TT----------CTTCCTTTACCTACCCA-AATCTTATAA-----------AACA- GCCCCACCC-C-T-ACCTCCCTTCGCTGACTCTCTTTTTGGACTCAGCCCGCCTGCAACC AGGTGA-----AA--TAAACAGCCATGTTGCTCCCACAAAGCCTG--TTT--GGTGGTCC TTTCACACGAACGTGCATGA--------- >LTR7d2_chr4_157596585_157597000_weakenh_SOLO_C_7down___chr4_157596585157597000___1408 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCAGG TACACAGGCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------AGTTCCTGCCTTAACCGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------CTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTGC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACCCC-TGCCCGCC-GAGGGCAACCC CCT-TT-GACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG- GCCCCACCC-C-T-TTCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC AGGTGA-----AA--T-AACAGCCTTGTTGCTCACACAAATCCTG--TTC--GGTGGTCT CTTCACAGGGACGCGCATG---------- >LTR7d2_chr11_5160297_5166117_3254_ZNF534_TSSflanking_NANOG_chimeric_GRO5of7_GRO6of7_GRO7of7_C_7down___chr11_51657065166117___1411 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATGTCC CCTGTGAC---------------------------------------------CTGCATA TACACATACAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------AGTTTCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAACCC CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACA- GCCCCACTC-C-T-ATCTCCCTTTGCTGACTCTCTTTTTGGACTCAGCCTGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTTACACAAAGCCTG--TTT--GGTAGTCT CTTCATATGGACGCGCATG---------- >LTR7d2_chr2_116183753_116189710_3107_KAP1_EncodeTxn_C_7down___chr2_116189300116189710___1410 TGTCAGGCCCCTGAGCCCAAG-----------------------CTAAGCTATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------AGTTCCTG-CTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAA----CACCTTGTG-------------- ---------------------------AC-CCCCACCCC-TGCCCGCCAGAGAACAACCC CCC-TTTGAGTGTAATTTTCCTTTAGCTACCCA-AATCTTATAA-----------AATG- GCCCTACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTTGGACTCAGCCTGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACGCAAAGCCTG--TTT--GGTGGTCT CTTCAAAAGGACACGCATG---------- >LTR7d2_chr3_174232028_174232438_h3k27ac_enh_SOLO_FOXP1_NANOG_44108_C_7down___chr3_174232028174232438___1409 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTCA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------CT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------GAG----CACCTTGTG-------------- ---------------------------AC-C-CCACTC--TGCCCGCCAGAGAACAACCC CCC-TTTGACTGTAATTTTCCTTTGCCTACCCA-AATCCTATAA-----------AACG- GCCCCATCC-C-T-ACCTCCCATCGTTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AG--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTGT CTTCACACAGACGCGCATG---------- >LTR7d2_chr13_54127418_54133158_3099_1_k4me3_weakenh_NANOG_SMAD11_wanghigh_C_7down___chr13_5413276154133158___1390 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGTCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----TTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CGCCTTTTG-------------- ---------------------------AC-C-CCACTC---------------------C CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------GACG- GCCCTATCC-C-T-GTCTCCCTTGGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAAACGCGCATG---------- >LTR7d2_chr5_144611352_144616900_2412_1_EncodeTxn_GRO4of7_C_7down___chr5_144616491144616900___1409 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACA CACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTTC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----ATCATCCTGGCTCAA--AAGCTCCCTTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTCGTG-------------- ---------------------------AC-C-CCACTCC-TGCCCTCCAGAGAACAACCC CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATATTATAA-----------AATG- GCCCCA-CC-C-C-ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCAGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--TGTGGTCT CTTCAAACAGAAATGCATG---------- >LTR7d2_chr9_3500329335009333_3295_ZNF534_enh_GRO2of7__chr9_3500329335003704____1411 -GCCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCATG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAATGAAAGTGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CGCCCCCCC-TGCCCGCCAGAGAACAACCC CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTGGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCT AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGACGCGCATGA--------- >LTR7d2_chr1_82955311_82961594_4405_ZNF534_EncodeRepressed_7down____chr1_8295531182955724____1411 -GTCAGGCCTCGGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGCC---------------------------------------------CTGCATG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GATATTCCACCATAAAAGAAATGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAT----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCTCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACTTTGTG-------------- ---------------------------AC-CCCTACTCC-TGCCCGCCAGAGAACAACCC GCC-TTGGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG- GCCCCACCC-C-T-ACCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCCTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACACGCATGA--------- >LTR7d2_chr5_126673078_126673480_enh_SOLO_7down____chr5_126673078126673480____1401 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCACCATATCC CCTGTGAC---------------------------------------------CTGCATG TACCCATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCAAAAAAGAAATGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCACCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CAACTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAACCC CCC-T----------TTTTCCTTTACCTACCCA-AATCCTATAA-----------AACT- GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACACGCATGA--------- >LTR7d2_chr15_92511307_92517425_3349_ZNF534_ZNF90_KAP1_NANOG_7down____chr15_9251130792511769____1409 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGTCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--TTGAAATTCCTTCTCCAGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAACCC C---TTTGACTGTAATTTTCCTTCACCTACCCA-AATCTTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCGCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCGCACAAAGCCTG--TTT--GGTAGTCT CTTCACACCGACACACATGA--------- >LTR7d2_chr3_118733396_118733806_EncodeTxn_SOLO_NANOG_C_7down___chr3_118733396118733806___1410 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG CACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAATGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATAAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--ATGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCATTCC-TGCCCGCCAGAGAACAACCC CCA-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTGTAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGT-A-----AA--TAAACAGCCTTGTTGCTCACACACAGCCTG--TTT--AGTGGTCT CTTCACACGGACGCACGTG---------- >LTR7d1_chr11_37969219_37969623_EncodeTxn_SOLO_C_7down___chr11_3796921937969623___1404 TGTCAGGCCTCTGAGCCTAAG-----------------------CTAAGTCATCATATCC CCTGTGAC---------------------------------------------CCGCACG TACACATCCAGA------------------------------------------------ -----------------------------CGGCT-------------------------- ------------------CGTTCTTGCCTTAACTGAT----------------------- ---GACATTCTACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------GC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC---------T--GTGAAATTCCTTCTCCTGG-------------- ----ATCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCTACTCC-TGCCTGCCAGAGAACAACCC CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AATG- GCCCTACCC-C-T-ATCTCCTTTTGCTGA--CTCTTTTTGGACTCAGCCCGCCTGCACCC AAGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACG---------------- >LTR7d1_chr2_57227242_57235205_2902_ZNF534_EncodeRepressed_7down____chr2_5722724257227641____1399 -GTCAGGTCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CTTGTGAC---------------------------------------------CCACACA TACACATCCAGA------------------------------------------------ -----------------------------TGGCT-------------------------- ------------------GGTTGCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAATGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTC-------------------- --------TCCTGGCTCAA--AAGCTCCTCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCTACCAGAGAACAAACC CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AATG- GCCCCACCC-C-T-GTCTCCCTTCGCTGA--CTCTTTTTGGACTCAGCCCGTCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACCAATGCAAGTGA--------- >LTR7d2_chr11_29973188_29973618_EncodeTxn_SOLO_C_7int___chr11_2997318829973618___1391 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TATATGCCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------TGTTCCTGCCTTAACTGAT----------------------- ---GACATTCTACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----TTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACT--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTGC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CATCTTGTG-------------- ---------------------------AC-CCCCACCCC-TGCCCACCAGAGAACAACCC CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AAT------A-----------AATG- TCCCCACCC-C-T-ATCTCCTTTC----A--CTCTTTTTGGACTCAGCCCACCTACACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTAGTCT CTTCACACCGA------------------ >LTR7d2_chr3_163907530_163913988_3271_ZNF534_KAP1_EncodeTxn_NANOG_7down____chr3_163907530163907935____1405 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACAACCAGA------------------------------------------------ -----------------------------GGGCC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCATCACAAAAGAAATGAAAATGGCC-ATTCC------------------- ------------TG------------------AC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCACCAGAGA---ACCC CCG-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AATG- GCCCCACCC-C-T-ATCTCCTTTCACTGA--CTCTTTTTGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGACGCACATGA--------- >LTR7d1_chrX_114051229_114051630_EncodeTxn_SOLO_FOXP1_NANOG_7down____chrX_114051229114051630____1401 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------AC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAACCC CCC-TTT----------TTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGAGTGA--------- >LTR7d1_chr10_50503342_50503701_weakenh_SOLO_7down____chr10_5050334250503701____1359 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CCGCATG TACACATCCAGA------------------------------------------------ -----------------------------TAGCC-------------------------- ------------------GGTTCCTGCCTTAACTGA------------------------ ------------------------------------------------------------ --------------------------------------------------------TGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCAGGCTCTA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAACCC C-C-TTTGACTGTAATTTTCCTTTACCTACCCA-CATCTTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACACAGCCTG--TTT--GGTGGTCT CTTCACACGGATATGAGTGA--------- >LTR7d2_chr9_25675972_25676379_TSSflanking_SOLO_7down____chr9_2567597225676379____1404 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATGTCC CCTGTGAC---------------------------------------------CCACATG TACACATCCAGA------------------------------------------------ -----------------------------TGGCT-------------------------- ------------------GGTTCTTTCCTTAACTGAC----------------------- ---GACATTCCACCACACAACAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTGC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTCGTG-------------- ---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAACCC CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AAACTTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCACTGAC--TCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACAAAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACACG-------------- >LTR7d1_chr11_81802232_81802643_h3k27ac_EncodeRepressed_SOLO_7down____chr11_8180223281802643____1411 -GTCAGGCTGCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCATG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAATGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATAAG ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGACTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAATCC CCC-TTTGACTGTAATTTTGCTTTACCTACCCA-AATCTTATAA-----------AACG- GCCCTAACC-C-T-ATCTCCCTTCACTGTATCTCTTTTTGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCATAGGGACATGAGTGA--------- >LTR7d1_chr19_54894297_54900597_1746_ZNF534_EncodeTxn_chimeric_C_7down___chr19_5490018554900597___1411 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGGC---------------------------------------------CTGTATG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACGAAAGAAATGAAAATGGCCTGTTCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--ATGAAATTCCTTCTCCTGG-------------- ----CTCATCCCGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AA-CCCCACTCC-TGCCCGCCAGAGAACAACCC CCT-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCGCACTC-C-T-ATCTCCCTTTGCTGACTCTCTTTCTGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAATCCTG--TTT--GGTGGTCT CTTCACACGGACGTGAGTG---------- >LTR7d1_chr4_178207120_178213342_3572_ZNF534_ZNF90_KAP1_EncodeRepressed_7down____chr4_178207120178207531____1411 -GTCAGGCCTCTGACCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCT-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACTAAGGAAATGAAAATGGCCAGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGGC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAACCC CCG-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTTGGACTCAGCCCACCTGCACCC GGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAACCTG--TTT--GGTGGTCT CTTCACATGGAAGTGCATGA--------- >LTR7d2_chr5_81953304_81959235_4379_ZNF534_ZNF90_KAP1_EncodeRepressed_7down____chr5_8195330481953661____1357 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATT--------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTC--TGCCCACCAAAGAACAACCC CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTTGCTGACTC--TTTTTGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACAGGGATGTGAGTGA--------- >LTR7d1_chr18_75093813_75094223_EncodeTxn_SOLO_C_7down___chr18_7509381375094223___1410 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAG-CATCATATCC CCTGTGAC---------------------------------------------CTGCATG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAATGAAAATTGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC AAT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAACCC CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG- GCCCCACCC-C-G-ATCTCCCTTCGCTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC AAGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGTGCATG---------- >LTR7d1_chr11_71505505_71505914_h3k27ac_EncodeTxn_SOLO_7down____chr11_7150550571505914____1408 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATGTCC TCTGTAAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ACT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CTCCACTCC-TGTCTGCCAGAGAACAACCC CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCTTTCGCTG---CTCTTTTCAGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACCGATGCGAGTGA--------- >LTR7d1_chr2_184168918_184169332_EncodeTxn_SOLO_C_7down___chr2_184168918184169332___1411 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATACCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACGGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTCATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAACCC CGC-TTTGACTGTAATTTTCCTTTACCTAACCA-AATCTTATAA-----------AACG- GCCCCACCC-C-T-ATGTCCCTTCGCTGACTCTCTTTTCCGACTCAGCCCTCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGATGCGAGTG---------- >LTR7d1_chrX_43007080_43007491_SOLO_NANOG_44108_SMAD11_SOX2_C_7down___chrX_4300708043007491___1411 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GATATTCCACAACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----TTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAACCC CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT TTTCACACGGACGCGAGTG---------- >LTR7d1_chr3_21377907_21382955_2230_1_EncodeRepressed_GRO4of7_C_7down___chr3_2138254721382955___1407 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CTTGTGAC---------------------------------------------CTGCACG TGCACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AACCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAA----CC CCC-TTCAAGTGTAATTTTCCTTTACCTACCCA-AATCTTGTAA-----------AATG- GCCCTACCC-T-T-ATCTCCCTTCCCTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GCTGGTCT CTTCACAGGGCCGCGAGTG---------- >LTR7d1_chr19_46273189_46278852_2961_ZNF534_KAP1_k4me3_TSSflanking_GRO3of7_C_7down___chr19_4627843946278852___1411 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCG-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTTC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GGGAAATTCCTTCTCTTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACCCC-TGCCAGCCAGAGAACAACCC CCC-TTTGACTGTAATTTTCCTTTACATACCCA-AATCTTGTAA-----------AACG- GCCCCACCC-C-T-ATCTCCGTTCCCTGACTCTCTTTTCCGACTCAGCCCGCCTGCACCC AGGTGA-----AG--TAAACAGCCCTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGAGTG---------- >LTR7d1_chrX_116720317_116726712_3022_ZNF534_KAP1_EncodeTxn_NANOG_44108_GRO5of7_GRO6of7_GRO7of7_C_7down___chrX_116726299116726712___1411 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC CCTGTGAC---------------------------------------------CTGCATG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGCTCTGTTCC------------------- ------------TG------------------CC----------TTAA----CCGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAACCC CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTCATAA-----------AATG- GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTTGGACTCAGCCTGCCTGCACCC ATGTGA-----AA--TAAACAGCCTCGTTGGTCACACAAAGCCTG--TTT--GGTGGTCT CTTCATACGGATGCAAGTG---------- >LTR7d1_chr7_148309416_148315615_3175_ZNF534_KAP1_EncodeRepressed_GRO5of7_GRO6of7_GRO7of7_C_7down___chr7_148315206148315615___1409 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATC--ATTT CCTGTGAC---------------------------------------------CTGCATG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTCAT----------------------- ---GACATTCCACTACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCCTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAACCC CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG- GCCTCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTTGGACTCAGCCTGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGCAAGTG---------- >LTR7d1_chr11_6801847_6802255_EncodeRepressed_SOLO_7down____chr11_68018476802255____1408 -GTCAGGCCTCTGAGCCCAGG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCATG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------AGTTTCTGCCTTAACTGAT----------------------- ---GATATTCCACCACAAAAGAAATGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCTTGGCTCAA--AAGCTCCTCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GTG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAA---CCC CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTCATAA-----------AATG- GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTTGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACTCAAAGCCTG--TTT--GGTGGTCT CTTCACATGGATGCGAGTGA--------- >LTR7d1_chr3_166500605_166506418_3203_ZNF534_KAP1_EncodeTxn_GRO4of7_C_7down___chr3_166506020166506418___1398 TGTCAGGCCTCTCAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCATG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAATGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGGC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------AAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACTACCC CCC-TTT------------CCTTTACCTACCCA-AATCCTATAG-----------AATG- GCTCCACCC-C---GTCTCCCTTCGCTGACTCTCTTTTTGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCTTG--TTT--GGTGGTCT TTTCACATGGATGTGAGTG---------- >LTR7d1_chr6_86598252_86603901_3127_ZNF534_EncodeTxn_GRO4of7_C_7down___chr6_8660349486603901___1407 TGTCAGGCCTCTGAGCCTAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCATG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAG---TGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCT-GTG-------------- ---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAACCT CCC-TTTGACTGTAATTTTCCTTTACCTATCCA-AATCTTATAA-----------AATG- GCCCCACCC-C-C-ATCTCCCATTGCTGACTCTCTTTTCAGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAGCAGCCTTGTTGCTCACACAAAGCCTG--TTT--GATGGTCT CTTCACATGGATGTTAGTG---------- >LTR7d1_chr11_131254535_131260279_3358_ZNF534_KAP1_EncodeTxn_GRO1of7_C_7down___chr11_131259868131260279___1411 TGTCAGGCCTCTGAGCCTAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCATG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAATGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAC----CAACTGGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAACCC CTC-TTTGAATATAATTTTCCTTTACCTACCCA-TATCTTATAA-----------AATG- GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCAGACTCAGCCTGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTCTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACATGAGTG---------- >LTR7d1_chr21_17899676_17900086_EncodeRepressed_SOLO_NANOG_C_7down___chr21_1789967617900086___1410 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTTTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGGC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCAT-CTGACTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAACCC CCC-TTTGACTGTAATTTTCCTTTATCTACCCA-AATCTTATAA-----------AATG- GCCCTACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCAGACTCAGCCTGCCTGCACCC AGGTGC-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGACGCGAGTG---------- >LTR7d1_chr11_83419135_83423556_2442_ZNF534_KAP1_EncodeTxn_GRO4of7_7down____chr11_8341913583419545____1409 -GTCCGGCATCTGAGTCCAAG-----------------------CTAAGCCATCCTATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------AGTTCCTGCTTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGCTCC------------------- ------------TG------------------CC----------TTAA----CTGATGTC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACACC-TGCCCGCCAGAGAACAACCC CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AATG- GCCCCACCC-C-T-GTCTCCCTTCGCTGAC--TCTTTTCAGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGACACGAGTGA--------- >LTR7d1_chr14_85732437_85738601_3090_ZNF534_k4me3_EncodeRepressed_NANOG_GRO5of7_GRO6of7_GRO7of7_C_7down___chr14_8573819085738601___1411 TGCCAGGCCTTTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------CGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---AACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-TCCCACTCC-TGCCCACCAGAGAACAACCC CCC-TTTGACCGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AATG- GCCCCACCT-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCAAATTGACGCGAGTG---------- >LTR7d1_chrX_2850526_2850930_EncodeRepressed_SOLO_NANOG_7down____chrX_28505262850930____1404 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCGTCATATCC CCTGTGAC---------------------------------------------CTGCATG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTAATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTTCG-------------- ---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAACCC CCC-TTTGACTGTAATTTTCCTTGACCTACCCA-AATCTTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCT AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACG---------------- >LTR7d1_chr12_9962437_9968690_3068_ZNF534_EncodeTxn_GRO4of7_C_7down___chr12_99682709968690___1409 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATGC CCTATGAC---------------------------------------------CTGCATG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCGTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--CTGAAATTCCTTCTCCTGG-------------- ----CTCATCTTGGCTCAA--AAGCTCCCCTAT--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTT-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAACCC CCC-TTTGA-TGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACA- GCCCCACCC-C---ATCTCCCTTCGCTGACTCTCTTTGCAGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--TGTGGTCT CTTCACACGGATGCGAGTG---------- >LTR7d1_chr1_231829672_231835648_3227_ZNF534_EncodeRepressed_NANOG_C_7down___chr1_231835237231835648___1411 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCAAG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TG--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAAAGAACAACCC CCC-TTTGACTGTAATTTTCCTTTATCTACCCA-AATCTTATAA-----------AACA- GCGCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCTTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--AGCGGTCT CTTCACACGGACGCGAGTG---------- >LTR7d2_chr3_35874404_35880025_4481_ZNF534_KAP1_EncodeRepressed_GRO5of7_GRO6of7_GRO7of7_C_7down___chr3_3587966735880025___1357 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAA--CATCATATCC CTTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GA------------------------------------------------------- -----------------------------------------------------------A ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--ATGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTC--TGCCCACCAGAGAACAACAC CCC-TTTGACTGTAATTTTCCTTTATCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCTTTACTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGTGAGTG---------- >LTR7d2_chr1_54020110_54020467_EncodeTxn_SOLO_C_7down___chr1_5402011054020467___1357 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGACC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GA------------------------------------------------------- -----------------------------------------------------------C ACT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTC--TGCCCGCCAGAGAACAACCC CCC-TTTGACTGTAATTTTCCTTTATCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCT--TTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCTTTATTGCTCACATAAATCCTG--TTT--GGTGGTCT CTTCACACGGATGCGAGTG---------- >LTR7d2_chr21_44341537_44341947_h3k27ac_EncodeRepressed_SOLO_NANOG_C_7down___chr21_4434153744341947___1410 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCACCATGTCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCT-------------------------- ------------------GGTTCTCGCCTTAACTGAT----------------------- ---GACATTCCACCATAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATAAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-TCCCACTC--TGCCCGCCAGAGAACAACCC CCC-TTTGACTATAATTTTCCTTTATCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTCACTGACTCTCTTTTCAGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCTTGATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACACGAGTG---------- >LTR7d2_chr1_48209002_48214821_3046_ZNF534_k4me3_enh_NANOG_44108_C_7down___chr1_4821441248214821___1409 TGTCAGGCCTCTGAGCCTAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------TGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCCGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTTG-------------- ----CTCATCCTGGCTCAA--AAGCCCCCCTGC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CTCCACTC--TGCCCGCCAGAGAACAATCC CCC-TTTGACTGTAATTT-CCTTTATCTACCTA-AATTCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTAGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTAGTCT CTTCACACAGATGCGAGTG---------- >LTR7d2_chr1_7689481376900387_3290_ZNF534_KAP1_EncodeTxn_NANOG_GRO2of7__chr1_7689997776900387___1410 TGTCAGGCCTCTGAGCCCAAT-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GATTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AATCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CTCCACTC--TGCCCACCAGAGAACAACCC CCC-TTTGACTGTAATTTTCCTTTATCTACCCA-AATCCTATAA-----------AACA- GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCAGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCTGTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGACACGAGTG---------- >LTR7d2_chr15_94750749_94756464_4470_ZNF534_ZNF90_KAP1_EncodeTxn_GRO3of7_7down____chr15_9475074994751160____1411 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACAGTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGACATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTGC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCTCCAGAGAACAACCC CCC-TTTGACTGTAATTTTCCTGTATCTACCCA-AATCTTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTGTTTTCGGACTCAGCCTGCCTGCACCC AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCAAACAGACGCGAGTGA--------- >LTR7d2_chr2_188168688_188174691_3123_ZNF534_weakenh_NANOG_C_7down___chr2_188174286188174691___1405 TGTCAGTCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACA TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTTCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCC------------------------- ------------TG------------------CC----------TTAA----CTGATGGC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTTTCCTGG-------------- ----TTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAACCC CCC-TTTGACTGTAATTTTCCTTTATCTACCCA-AATTTTATAA-----------AACA- GCCCTACCC-T-T-ATCTCCCTTGGCTGATTCTCTTTTCGGAGTCATCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGAGTG---------- >LTR7d2_chr9_11038673_11039079_enh_SOLO_NANOG_7down____chr9_1103867311039079____1406 -GTCAGGCCTCTGAGCCTAAG-----------------------CTAAGTCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------CGTTTCTGCCTTAACTGGT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGCCCTGTTCC------------------- ------------TG------------------CC----------TTAA----TTGATGAC GTT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-TCCCACTCC-TGCCCACCAGAGAACAACCC CTC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTTGCTGACTCTTTTTTCGGACTCGGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACTCG-------------- >LTR7d2_chr5_104031710_104037313_3297_ZNF534_EncodeTxn_7down____chr5_104031710104032118____1408 -GTCAGGCTTCTGAGCTCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGTC-------------------------- ------------------GGTTCCTGCCTTAACTGAG----------------------- ---GACATTCCACCACAAAATAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC --T--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTGGTG-------------- ---------------------------AC-ATCCACTC--TGCCCACCAGAGAACAACCC CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATGGTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTTGCTGACTGTCTTTTCTGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACAGAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGTGAATGA--------- >LTR7d1_chrX_16227870_16228276_EncodeRepressed_SOLO_7down____chrX_1622787016228276____1404 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCATATCC -------C---------------------------------------------CTGCACA TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCTTGTTCC------------------- ------------TG------------------CC----------TGAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCTTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACCCC-TGCCAGCCAGAGAACAA-CC CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AATG- GCCCCACCC-C-T-ATCTCCCTTTGCTGACTGTCTTTTTGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGTGAGTGA--------- >LTR7d1_chr8_57941798_57942211_EncodeRepressed_SOLO_C_7down___chr8_5794179857942211___1411 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACA TACACATCCAGA------------------------------------------------ -----------------------------TGGCT-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGTTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACTTTGTG-------------- ---------------------------AC-CCCCACCCC-TGCCAGCCAGAGAACAA-CC CCC-TTCGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCTGCCTGCAACC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGATGTGAGTG---------- >LTR7d2_chr18_57857373_57857769_EncodeRepressed_SOLO_7down____chr18_5785737357857769____1396 --TCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACA TACACATCCAGA------------------------------------------------ -----------------------------TAGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAAGTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACCCC-TGCCCGCCAGAGAACAA-CC CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AATG- GCCCCACCC-C-T-ATCTCCCTTCGC-------------GGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACGAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGTGCATGA--------- >LTR7d2_chr3_90082984_90086728_1507_1_k4me3_EncodeRepressed_NANOG_7down____chr3_9008298490083400____1410 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACA TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTGC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-CC CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG- GCCTCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTTT CTTCACAGGGATGTGCATGA--------- >LTR7d1_chr6_23029012_23029421_h3k27ac_TSSflanking_SOLO_7down____chr6_2302901223029421____1409 ---CAGGCCTCTGAGCCCAAA-----------------------CTAAGCCATCATAACC CCTGTGAC---------------------------------------------CTGCACA TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------AGTTCCTGCCCTAACTGAT----------------------- ---GACATTCCACCACAAAACAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAATCC CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AATG- GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTTTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGACGTGAGTGA--------- >LTR7d2_chr11_123865322_123871065_3018_KAP1_EncodeTxn_C_7down___chr11_123870666123871065___1398 TGTCAGGCCTCTGAGCCCA-G-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACA TACACACCTAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------AGTTCCTGCCTTAACCAAT----------------------- ---GACAGTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AACGTCCCCTGC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAACCC CAC-TTC----------TTCCTTTACCTACCCA-AATCTTATAA-----------AATG- GCCCCA-CC-C-T-ATCTCCCTTTGCTGACTGTCTTT-CGGACTCAGCCCGGTTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCGG--TTT--GGCGGTCT CTTCACACAGACGTCCATG---------- >LTR7d2_chr6_153442518_153442929_h3k27ac_enh_SOLO_NANOG_C_7down___chr6_153442518153442929___1411 TGTCAGGCTTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACA TACACATCCAGA------------------------------------------------ -----------------------------TGGTC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAATGAAAATGGTCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAACCC CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCCCTGACTATCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAGACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGACGCGCATG---------- >LTR7d1_chr21_2816143428166924_2848_1_k4me3_EncodeRepressed_GRO2of7__chr21_2816143428161842____1407 -GTCAGGCCT-TGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACA TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCAGCCAGAGAACAA-CC CCC-TTTGACT--AATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCACCACCC-C-T-ATCTCCCTTCACTGACTCTCTTTTCAGACTCAGCCCGCCTGCATCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAATCCTG--TTT--GGTGGTCT CTTCACACGGACGCGAGTGA--------- >LTR7d2_chr22_3483460834840024_2649_1_k4me3_EncodeTxn_GRO2of7__chr22_3483460834835022____1409 -GTCAGGTCTCTGAGCTCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACA TACACATCCAGA------------------------------------------------ -----------------------------TGGCT-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCCCAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGTTGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAA-CC CCA-TTTGACTGTAATTTTCCTTTACCTACCCA-AATATTATAA-----------AACG- GCCCCACCC-C---ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCATCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACAGGGACGCGCATGA--------- >LTR7d2_chr12_72709003_72714311_2935_1_EncodeTxn_C_7down___chr12_7271395872714311___1350 TGTCAGGTCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACA TACACTTCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATT--------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGTTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACCCC-TACCTGCCATAGAACAA-CC CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C---ATCTCCCTTCACTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACA-CCTTGTTGCTCATGTAAAGCCTG--TTT--GGTGGTCT CTTCACAGGGAC----------------- >LTR7d2_chrX_29975546_29981247_2113_1_EncodeRepressed_7down____chrX_2997554629975946____1400 -GTCAGGCCTCTGAGCCCAAG-----------------------TTAAGCCATCACATCC CCTGTGAC---------------------------------------------CTGCACA TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAGAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGTC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTC-------------------- --------TCCTGGCTCAA--AAGCTCCCTTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACCCC-TGCCCGCCAGAGAACAA-CC CCC-TTTGACTGTAATTTTCCTTTATCTACCCA-AATCCTATAA-----------AACA- GCCCCACCC-C-T-ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATGA--------- >LTR7d2_chrX_30103613_30109253_3199_1_EncodeRepressed_GRO4of7_7down____chrX_3010361330104012____1399 -GTCAGGCTTCTGAGCCCAAG-----------------------CTAAGCCATCGTATCC CCTGTGAC---------------------------------------------CTGCACA TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTACTGCCTTAACTGAT----------------------- ---GACATTCCTCCAAAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTC-------------------- --------TCCTGGGTCAA--AAGCTCCCTTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACCCC-TGCCCGCCAGAGAACAA-CC C-C-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGTCGCGCATGA--------- >LTR7d2_chr13_6120568261211279_2425_1_k4me3_EncodeTxn_NANOG_GRO2of7__chr13_6120568261206083____1401 -GTCAGGCCTCTGAGCCTAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACA TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAAGTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTACTGG-------------- ----CTCGTCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AG-CCCCACTCC-TGCCCACAAGAGAACAA-CC CCC-CT---------TTTTCCTTTACCTACCCA-AATTCTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGATGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTA--TTT--GGTGGTCT CTTTACAGGGACGCGCGTGA--------- >LTR7d1_chr1_112809667112815325_2652_ZNF534_k4me3_enh_wanghigh_GRO2of7__chr1_112809667112810079____1410 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACT TACACTTCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---CACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTTG----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTGC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCCACCAGAGAACAA-CC CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACA- GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCCTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAATCCTG--TTT--GGTGGTCT CTTCACACGGACGTGAGTGA--------- >LTR7d1_chr2_184759632_184760011_EncodeRepressed_SOLO_NANOG_7int____chr2_184759632184760011____1379 -GTCAGGCCTCTGAGCCCAAG-----------------------CT-------CATATCC CCTGTGAC---------------------------------------------CTGCACC TATACATCCAGA------------------------------------------------ -----------------------------TGACC-------------------------- ------------------------TGAAGTAACTGAA----------------------- ---GA------ATCACAAAAGAAGTGAAAATGGCCAGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACC------------------- --------------------------------CCACTCC-TGCCCGCCAGAGAACAA-CC CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACA- GCCCCACCT-C-T-ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCATAGGGACGTG-------------- >LTR7d1_chr14_83961579_83961993_h3k27ac_EncodeTxn_SOLO_NANOG_7down____chr14_8396157983961993____1406 -GTCAGGCCTCTGAGACAAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCACA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATCCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCAAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTTTG-------------- ---------------------------AC-CCCCACCAC-TGCCTGCCAGAGAACAA-CC CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C---ATCTCCCTTCACTGACTCTCTTTTCGGCCTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGTCTG--TTT--GGTGGTCT CTTCACACGGACGCGC---A--------- >LTR7d1_chr9_31440339_31440748_EncodeRepressed_SOLO_NANOG_7down____chr9_3144033931440748____1409 -GTCAGGCCTCTGAGCCAAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCAGG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCCGGCTCAA--AAGCTCCCCAAA--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACCCC-TGCCCCCCAGAGAACAA--C CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C---ATCTCCCTTCACTGACTCTCTTTTTGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGATCT CTTCACACGGACGTGAGTGA--------- >LTR7d1_chr1_35390272_35390664_h3k27ac_enh_SOLO_NANOG_C_7down___chr1_3539027235390664___1391 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTCTGAC---------------------------------------------CTGCAGG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCAACACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACTTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCTCGCCAGAGAACAA-CC CCC-CT---------TTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG- GCCCCACCC-C---ATCTCCCTTCACTGACT--CTTTTCAGACTCAGACCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGAC----------------- >LTR7d1_chrX_147138030_147138442_EncodeTxn_SOLO_7down____chrX_147138030147138442____1408 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCATA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAGAAGAAGTGAAAATGGTCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----TTCTTCCTGGCTCAA--AAGCTCTCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----GACCTTGTG-------------- ---------------------------AC-CCCCACCCT-TGCCCGCCAGAGAACAA-CC CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTACAA-----------AATG- GCCCCACCC-C---ATCTCCCTTCACTGACTCTCTTTTAGGACTCAGCCCACCTGCACCC AGATGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGGCT CTTCACACGGACACGAGTG---------- >LTR7d1_chr9_10884982_10890707_2892_KAP1_EncodeRepressed_GRO5of7_GRO6of7_GRO7of7_7down____chr9_1088498210885376____1394 -GCCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGCGAC---------------------------------------------CTGCATG TACACATCCAGA------------------------------------------------ -----------------------------TGGCT-------------------------- ------------------GGTTCTTGCCTTAACTGAT----------------------- ---GACATTCTACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCAACCC-TGCCCCGCAGAGAACAA-CC CTC-TT----------TTTCCTTTACCTACCCA-AATCTTATAA-----------AACA- -----ACCC-C-T-ATCTCCCTTAGCTGACTCT--TTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGTTCACACAAAGCCTG--TTT--AGTGGTCT CTTCACATAGACGCGCGTGA--------- >LTR7d1_chr6_38921759_38922167_EncodeRepressed_SOLO_C_7down___chr6_3892175938922167___1408 TGTCAGGTCTCTGAGCCAAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCATG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTTTCCTGG-------------- ----CTCATCCTAGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACCCC-TGCCCGCCAGAGAACAA-CC CCT-TT----------TTTCCTTTACCTACCTA-AATCCTATAA-----------AACG- GCCCCACCC-C-T-GTCTCCCTTCGCTGACTCT--TTTCGGACTCAGCTCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGCGCGTG---------- >LTR7d1_chr12_87907290_87912900_2780_1_EncodeTxn_GRO5of7_GRO6of7_GRO7of7_C_7down___chr12_8791249087912900___1408 TGTCAGGCCTCTGAGCCAAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCGTA TACACATCCAGA------------------------------------------------ -----------------------------TGGCT-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGGAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTTTCCTGG-------------- ----CTCCTCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCCTGTG-------------- ---------------------------AC-CCCCACCCC-TGCCCACCAGAGAACAA-CC CCT-TT----------TTTCCTTTACCTACCCA-AATCCTATAA-----------AACA- GCCCCACCC-T-T-ATCTCCCTTCACTGACTCT--TTTCGGACTCAGCCTGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGAGAGTG---------- >LTR7d1_chr15_24685360_24691027_2990_1_k4me3_EncodeTxn_C_7down___chr15_2469062724691027___1399 TGTCAGGCCTCTGAGCCTAAG-----------------------CTAAGCCATCACATCC CCTGTGAC---------------------------------------------CTGCATG TATGCATCCAGA------------------------------------------------ -----------------------------TGGC--------------------------- -----------------------CTGCCTTAACTGAT----------------------- ---GA------TCCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAACTCCCCCGC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACCCC-TGCCTGCCAGAGAACAA-CC CCC-TT----------TTTCCTTTACCTACCCA-AATCTTATAA-----------AACG- GCCCCACCC-C---ATCTCCCTTTGCTGACTCTCTTTTTGGACTCGGCCCGCCTGCACCC AGGTGA-----AA--TAAGCAGTCTTGTTGCTCACAGAAAGCCTG--TT---GGTGGTCT CTTCACACAGACACGAGTG---------- >LTR7d1_chr1_112820145112826054_1748_ZNF534_KAP1_k4me3_enh_NANOG_wanghigh_GRO2of7__chr1_112825661112826054___1393 TGTCAGGCCTCTGAGC----------------------------CCAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCATG TATGCATCCAGG------------------------------------------------ -----------------------------TGGC--------------------------- -----------------------CTGAAGTAACTGAA----------------------- ---GA------ATCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTAG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCTACCAGAGAACAA-CT CCT-TT----------TTCCCACTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCCTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAGCAGCCTTGTTGCTCACACAAAACCTG--TTT--GGTGGTCT CTTCACAGCAACGCGAATG---------- >LTR7d1_chr4_83234495_83234897_EncodeRepressed_SOLO_7down____chr4_8323449583234897____1389 -GTCAGGACTCTGAGCCTAAG-----------------------CTAAGCCATCATATCC CTAGTGAC---------------------------------------------CTGCATG TATACATCCAGA------------------------------------------------ -----------------------------TGGC--------------------------- -----------------------CTGCCTTAACTGGT----------------------- ---GA------GCCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCTC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACCCC-TGCCCACCAGAGAAAAA-CC CCC-TT----------TTTCCTTTACCTACCCA-AATCTTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCCCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGTGCGTGA--------- >LTR7d1_chrY_13097143_13097544_SOLO_7down____chrY_1309714313097544____1401 -GTGAGGTCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCATG TACACATCCAGA------------------------------------------------ -----------------------------TGGCT-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAT ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--CTGAAATTCCTTCTCTGGG-------------- ----CTCATCCTGGCTCAA--AAGCTTCCCAGC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCGTGTG-------------- ---------------------------AC-CCCCACCCC-TGCCAGCCAGAGAACAA-CC CCT-CT----------TTTCCTTTACCTACCCA-AATCTTATAA-----------AATG- GCCCCACCC-C-T-ATCTCCTTCCACTGACTCTCTTTTCCGACTCAGCCCGCCTGTACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGACTG--TTT--GGTGGTCT CTTCACACAGACATGAGTGA--------- >LTR7d1_chr2_126382198_126382599_EncodeRepressed_SOLO_C_7down___chr2_126382198126382599___1400 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCGGTGAC---------------------------------------------CTGCACG TGCACATCCAGA------------------------------------------------ -----------------------------TGGCT-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACACTCCACCACAAAAGAAGTGACAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CAGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATTCTGGCTCAA--AAGCTCCCCTGC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACCCC-TGCCCGCCAGAGAACAA-CC CCC-TT----------TTTCCTTTACCTACCCA-AATCTTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCACTAACTCTCTTTTCAGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACACGAGTG---------- >LTR7d1_chr14_48278478_48278865_EncodeTxn_SOLO_C_7down___chr14_4827847848278865___1374 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGG---------------------------- --------------------------CCCTAACTGAA----------------------- ---GA------ATCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATTCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-TCCCACCCC-TGCCCACCAAAGAACAA-C- CCC-TT----------TTTCCTTTACCTACCCA-AATCCTATAT-----------AACA- GCCGCACCC-C---GTCTCCCTTCGCTGACTCTCTTTTCAGACTCAGCCCACCTGTACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT ATTCACATGGA------------------ >LTR7d1_chr9_102729838_102730248_EncodeRepressed_SOLO_C_7down___chr9_102729838102730248___1399 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCAGG TACACATTCAGA------------------------------------------------ -----------------------------TGGTC-------------------------- ------------------TGTTCCTGCCTTAACTGAT----------------------- ---GACTTTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCATGGCTCCA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CTTCACCCC-TGCCCACCAGAGAACAA-CC CCC-TT----------TCTCCTTTA-CTACCCA-AATCCTATAA-----------AATG- GCCCCACCC-C-T-ATCTCCCCTCGCTGACTCTCTTTTCAGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGCAGTCT GTTCAGATGGACACGAGTG---------- >LTR7d1_chr5_166740058_166744650_3099_ZNF534_EncodeTxn_GRO5of7_GRO6of7_GRO7of7_C_7down___chr5_166744251166744650___1398 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCAAG TACACATCCAGA------------------------------------------------ -----------------------------TGGCG-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----ATGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCATCCC-TGCCCGCCAGAGAACAA-CC CCC-TC----------TTTCCTTTACCTACCCA-CATCTTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTTGCTGAC--TCTTTTCAGACTCAGCCCATCTGCACCC AGGTGA-----AA--TAAACAGCCTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGCGAGTG---------- >LTR7d1_chr8_57874485_57874894_EncodeRepressed_SOLO_C_7down___chr8_5787448557874894___1409 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCATG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTTCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACCCC-TGCCAGCCAGAGAACAC-CC CCC-TT----------TTTCCTTTACCTACCCA-AATCTTATAA-----------AACG- GCCCCACCC-C---ATCTCCCTTCGCTGACTCGCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAATAGGCTTGCTGCTCACACAAAGCGTG--TTT--GGTGGTCT CTTCACACAGGCGCGAGTG---------- >LTR7d1_chr1_182445466_182445875_EncodeTxn_SOLO_C_7down___chr1_182445466182445875___1409 TGTCAGGCTTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACTTTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCCTTTTCTGG-------------- ----CTCATCCTGGCTCAA--AA-CTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACCCC-TGCCCGCCAGAGAACAC-CC CCC-TT----------TTTCCTTTACCTACCCA-AATCTTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCACTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTTCTCACACAAAGCCTG--TTT--AGTGGTCT CTTCACACGGACGCGAGTG---------- >LTR7d1_chr3_97272463_97277550_2549_1_k27ac_weakenh_C_7down___chr3_9727715997277550___1380 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGA----------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCG-------------------------- ------------------GGTTCCTGCCTTAACTAAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GCGAAATTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACCCC-TTCCCGCCAGAGAACAC-CC CCC-TT----------TTTCCTTTACCTACCCA-AATCTTATAA-----------AATG- GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCATCTGCACCC AGGTGA-----AA--TAAATAGCCTTGTTGCTCACACAAAGCCTG--T------------ ----------------------------- >LTR7d1_chr4_172955660_172962312_3038_ZNF534_EncodeRepressed_C_7down___chr4_172961900172962312___1409 TGTCAGGCCTCTGAGCCAAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TG--GTGAAATTCATTTTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACCCT-TGCCAGCCAGAGAACAC-CC CCC-TT----------TTTCCTTTACCTACCCA-AATCCTATAA-----------AATG- GCACCACCC-C---ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC TGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCTTG--TTT--GGTGGTCT CTTCACACAGACATGCGTG---------- >LTR7d1_chr3_173155218_173161544_1581_ZNF534_EncodeTxn_C_7down___chr3_173161127173161544___1410 TGTCAGGCCTCTGAACCAAAG-----------------------CTAAACCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGTC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACAACAAAACAAGTGAAAATGTCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACCCC-TGCCAGCCAGAGAACAC-CC CTC-TT----------TTTCCTTTACCTACCCA-AATCCTATAA-----------AATG- GCCCCACCC-C-T-ATCTCCCTTCCCTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCT AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGATGCATGTG---------- >LTR7B_chr1_2ltr_int_fr_17__chr1_1356084113561228_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACAGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAATAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCCGCCCCACC CTAACTGAT------ACGAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------ATA--------TT----------------------------------- ------------------------CTCCCCCGCCCTTAAG--------------AAGGTA CTT-------------------------------TGTAA--T------------------ -----------------------------------------------ATTCTC-C----- ---------------ACCCTT---------GAGAATGAACTTTATA-------------- ------------------------------------------------------------ -----------------------CGCCTATCCC-AAACCTATAAGAACTATTGATAAT-- -------CC-C---ACCACCCTTTGCTGACTCCTTTTTCGGACTCAGCCCGCCTGCACCT AGGTGA-----AA--TAAACAGCC-TGTTGCTCACACAAAGCCTGT-TT---GGTGGTCT CTTCATACAGACGCACGTGA--CA----- >LTR7B_chr22_2ltr_int_fr_965__chr22_3906256039062970__ -------CCTCTGAGCTGAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACA TATACATCCACC------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAATAAGTGAAAATAAC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTTTTCCTGCCCCACC CTAACTGAT------ATGAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------ATA--------TT----------------------------------- ------------------------CTCCCCCGCCCTTAAG--------------AAGGTA CTT-------------------------------TGTAA--T------------------ -----------------------------------------------ATTCTC-CCC--- -------------AGACTCTT---------GAGACTGTACTTTGTA-------------- ------------------------------------------------------------ -----------------------CGCCTATCCC-AAACCTATAAGAACTAATGATGAT-- -------CC-C---ACCACCATTTGCTGAGTCCTTTTTCGGACTCAGCCCGCCCACACCC AGATGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TT---GGTGGTCT CTTCACACAGACGTGCGTGA--------- >LTR7B_chr10_2ltr_int_fr_152__chr10_100380920100381305_+_ -GTCAGGCCTCTGAGCCCAAA-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCATG TATACATACAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGAGATTTGTTCCTGCCCCACC CTAACTGAT------ACGAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------ATA--------TT----------------------------------- ------------------------CTCCCCCGCCCTTAAG--------------AAGGTA CTT-------------------------------TGTGA--T------------------ -----------------------------------------------ATTCT--CCC--- ---------------GCCCTT---------GAGAATGTACTTTGTA-------------- ------------------------------------------------------------ -----------------------CGCCTATCCC-AAACCTATAAGAACTAATGATAAT-- -------CC-C---ACCACCCTTTGTTGACTCCTTTTT-AGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TATACAGCCTTGTTGCTCACACAAAGCCTGT-TT---GGTGGTTT CTTCACACGGATGCATGTGA--CA----- >LTR7B_chr2_Sltr_795__chr2_177902063177902451_+_ -GTTAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATGATATCC CCTGTGAC---------------------------------------------TTGCAAG TATACATCCAGA------------------------------------------------ -----------------------------TGGTCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC CTAACTGAT------ACGAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------ATA--------TT----------------------------------- ------------------------CTCCCCCGCCCTTAAG--------------AAGGTA CTT-------------------------------TGTAA--T------------------ -----------------------------------------------ATTCTC-CCC--- ---------------GCCCTT---------AAGAATGTACTTTGTA-------------- ------------------------------------------------------------ -----------------------TGCCTATCCC-AAACCTATAAGAAACAATGATAAT-- -------CC-C---ACCACCCTTTGCTGACTCCTTTTTCAGACTCAGCCTGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TT---GGTAGTCT CTTCACACGGATGTGTGTGA--CA----- >LTR7B_chr18_Sltr_623__chr18_30233433023765__ TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGCCAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTTATTTGTTTCTGCTCCACC ----CTGAT------ACGAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------ATA--------TT----------------------------------- ------------------------CTCCC-CACCCTTAAG--------------AAGGTA CTT-------------------------------TGTAA--T------------------ -----------------------------------------------ATTCCC-CCC--- ---------------GCCCTT---------AAGAATGTACCTTGTA-------------- ------------------------------------------------------------ -----------------------CACCTATCCC-AAACCTATAAGAAGTCATGATAAT-- -------CC-C---ACCACCCTTTGCAGACTCCTTTTTCGGACTCAGCCCATCTGCACCC AGGTGA-----GA--TAAACAGCCTTGTTGCTCACACAAAGCCTGT-TT---GGTGATCT CTTCACATGGACGCGTGTGA--C------ >LTR7B_chr4_Sltr_1233__chr4_4253270742533093_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------TTGCATG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATGCACAA---AAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CGGATGAC ATT--------------------------------------------------------- -------------------------------CCACTATTGTGATTTGTTCCTGCCCCACC CTAACTGAT------ACGAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------ATA--------TT----------------------------------- ------------------------CTCCCTCACCCTTAAG--------------AAGGTA CTT-------------------------------TGTAA--T------------------ -----------------------------------------------ATTCCC-CCC--- ---------------GCCCTT---------AAGAATGTACTTTGTA-------------- ------------------------------------------------------------ -----------------------CGCCTATCCC-AAACCTATGAGAACTAATGATAAT-- -------CC-C---ACCACCCTTTGCTGACTCCTTTTTTGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTGT-TT---GGTGATCT CTTCACACGGACGTGCGTGA--CA----- >LTR7B_chr4_2ltr_int_fr_1175__chr4_145256564145256982__ TGTCAGGCCTCTGACCCCAAG-----------------------CTAAGCCATCATATTC CCTGTGAC---------------------------------------------CTGCAAG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCATAAAAGAAGTGAAAATAAC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC CTAACTGAT------ATGAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------ATA--------TT----------------------------------- ------------------------CTCCCCTGCCCTTAAG--------------AAGGTA CTC-------------------------------TGTGA--T------------------ -----------------------------------------------ATTATC-CCC--- ---------------GCCTTT---------GAGAATGTACTTTGTA-------------- ------------------------------------------------------------ -----------------------CGCCTATCCC-AAACCTATAAGAATTAATGATAAT-- -------CC-C---ACCACCCTTTGCTGACTCCTTTTTTGGACGCAGCCTGCCTGTACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGTCTGT-TT---GGTGGTCT CTTCACATGGACACACATGA--C------ >LTR7B_chr17_Sltr_597__chr17_3991741439917823_+_ -GTCAGGCCTCTGAACCCAAG-----------------------CTAAGCCATCATATTC CCTGTGAC---------------------------------------------CTGCATG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAATGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC CT----GAT------ACAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------ATA--------TT----------------------------------- ------------------------CTCCCCTGCCCTTAAG--------------AAGGTA CTT-------------------------------TGTAA--T------------------ -----------------------------------------------ATT-TC-TCC--- ---------------ACCCTT---------GAGAATGTACTTTGTA-------------- ------------------------------------------------------------ -----------------------AGCCTATCCC-AAACATATAAGAACTAATGATAAT-- -------GC-C---ACCACCCTTTGCTGACCCCTTTTTTGGACTCAGCTTGCCTGCACC- -------------------CAGCCTTGTTGCTCATATAAAGCCCGT-TT---CGTGGTCT CTTCACATGGACGCACGTGA--CA----- >LTR7B_chrX_Sltr_1835__chrX_8060430280604687_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACT TACACATCCAGA------------------------------------------------ -----------------------------TGGCCGGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAGGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCACTGTGATTTGTTCCTGCCCCACC CTAACTGAT------ATGAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------ATA--------TT----------------------------------- ------------------------CTCCCCCGCCCTTAAG--------------AAGGTA CTT-------------------------------TGTAA--T------------------ -----------------------------------------------ATTCTC-CCC--- ---------------GCCCTT---------AAGAATGTATTGTGTA-------------- ------------------------------------------------------------ -----------------------CTCCTATCCC-AAACCTAT----ACTAATGATAAT-- -------CC-C---ACCACCCTTTGCTGGCTCCTTTTTTGGACTCAGCCTGCCTGCACCC AGGTGA-----AA--TAAACTGCCTTGTTGCTCACGCAAAGCCTGT-TT---GGTGGTCT CTTCACACGAACGCGTGTGA--CA----- >LTR7B_chr7_2ltr_int_fr_1531__chr7_143105117143105505_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCATG TATACAGCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------GTCCACAAAAGAAGGGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC CTAACTGAT------AAGAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------ATA--------TT----------------------------------- ------------------------CCCCCCCGCCCTTAAG--------------AAGGTA CTT-------------------------------TGTAA--C------------------ -----------------------------------------------ATTCTC-CCC--- ---------------ACCCTT---------AAGAATATACTTTGTA-------------- ------------------------------------------------------------ -----------------------CGCCTATCCC-AAACCTATAAGAACTAATGATAAT-- -------CC-C---ACCACCCTTTGCTGACTCCTTTTTTGGACTCAGCCTGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGCTGCTCACACAAAGCCTG--TT---GGTGGTCT CTTCACACAGACGTGCGTGA--CA----- >LTR7B_chr15_Sltr_519__chr15_8333080883331264_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCCCG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATG--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC CTAGCTGAT------ACGAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------ATA--------TT----------------------------------- ------------------------CTCCCCAGCCCTTAAG--------------AAGGTA CTT-------------------------------TGTAA--T------------------ -----------------------------------------------ATTCTC-CCC--- -------------ACGCCCTT---------GAGAATGTACTTTGTA-------------- ------------------------------------------------------------ -----------------------CGCCTATCCC-AAACCTATAAGAACTAATGATAAT-- -------CC-C---ACCACCCTTTGCTGACTCCTTTTTCGGACTTAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTGT-TT---GGTGGTCT CTTCACACGGACATGCGTGA--CA----- >LTR7B_chr3_Sltr_1084__chr3_3958648939586872__ TGTCAGGCTTCTGAGCCCAAA-----------------------CTAAGCCATCATATCC CCTGTGAT---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATACACAAAAA-AGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGGTTTGTTCCTGCCCCACC CTAACTGAT------AC-AT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------ATA--------TT----------------------------------- ------------------------CTCCCCGACCCTTAAG--------------AAGATA CTT-------------------------------TGTAA--T------------------ -----------------------------------------------ATTCTC-CCC--- ---------------GCCCTT---------TAGAATGTACTTAGTA-------------- ------------------------------------------------------------ -----------------------CGCCTATCCC-AAACCTATAAGAACTAATGATAAT-- -------CC-C---ACCACCCTTTGCTGACTCCTTTTTCTGACTCAGCCCGCCTGCACC- AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTGT-TT---GGTGGTCT CTTCACACAGATGCGTGTGA--C------ >LTR7B_chrX_Sltr_1782__chrX_1621687316217254__ TGTCAGGCCTCTGAGCCCAAG-----------------------CTCAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCATG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACGGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAATCACTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC ----CTGAT------AC-AT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------ATA--------TT----------------------------------- ------------------------CTCCCCTGCCCTTAAG--------------AAGGTA CTT-------------------------------TGTAA--T------------------ -----------------------------------------------ATTCTC-CCC--- ---------------GCCCTT---------GAGAATGTACTTTGTA-------------- ------------------------------------------------------------ -----------------------CGCCTATCCC-AAACCTATAAGAACCAGTGATAAT-- -------CC-C---ACCACCCTTTGCTGACTCCTTTTTCGGACTCAGCCTGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTAACACAAAGGCTGT-TT---GGTGGTCT CTTCACACAGATGCGTGTGA--C------ >LTR7B_chr8_2ltr_int_fr_1590__chr8_109301077109301497_+_ -GTCAGGTCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TATGCATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAACAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAGAATAGT-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCACTGTGATTTGTTCCTGCCCCACC CTAACTGAT------AGGAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------ATA--------TT----------------------------------- ------------------------CTCCCCGATCCTTAAG--------------AAGGTA CTT-------------------------------TGTAA--T------------------ -----------------------------------------------ATTCTC-CCC--- -------------GCGCCCTT---------AAGAATGTACTTTGTA-------------- ------------------------------------------------------------ -----------------------CACCTATCCC-AAACCT-TAAGAACTAATGATAAT-- -------CC-C---ACCACCCCTTGCTGACTCCTTTTTCGGACTCAGCTCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGTTCACACAAAGCCTGT-TT---GGTGGTCT CTTTACACAGATGCGCCAGA--CA----- >LTR7B_chr17_Sltr_594__chr17_3163208731632458_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC TCTGTGAC---------------------------------------------C------ ---------AGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAATAAGTGAAAATAGC-------------------------- ---------------------------------C----------TGAA----CTGATGGC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC CTAACTGAT------ACAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------ATA--------TT----------------------------------- ------------------------CTCCCCCACCCT------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ---------------ACCCTT---------GAGAATGTCCTTTGTA-------------- ------------------------------------------------------------ -----------------------CGCCTATCCC-AAACCTGTAAGAACTAATGATAAT-- -------CC-C---ACCACCCTTTGCTGACTCCTTTTTCGGACTCAGCCCACCTGCACCC AGTTGA-----AA--TAAACAGCCTTGTTGCTCACAAAAAGCCTGT-TT---GGTGGACT CTTCACACAGATGCGCATGA--CA----- >LTR7B_chr7_Sltr_1575__chr7_8832029088320683_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCCGTAAC---------------------------------------------CTGCATG TATATATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGCAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC CTAACTGAT------ACAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------ATA--------TT----------------------------------- ------------------------CTCCCCCACCCT------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ---------------GCCCTT---------GAGAATGTACTTTGTA-------------- ------------------------------------------------------------ -----------------------CGCCTATCCC-AAACCTATAAGAACTAATGATGAT-- -------CC-C---ACCACCCTTTGCTGACTCCTTTTTCGGACTCAGCCCGCCTGCACCC AGATGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTGT-TT---GGTGGACT CTTCACACAGACACGCATGA--CA----- >LTR7B_chr8_Sltr_1589__chr8_108420632108421085__ TGTCAGGCCTCTGAGCCCAAG-----------------------TGAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACA TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCTGCAAAATAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTGCC-CACC TTAACTGAT------AC-AT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------ATA--------TT----------------------------------- ------------------------CTCCCCTGCCCTTAAA--------------AAGATA CTT-------------------------------TGTAA--T------------------ -----------------------------------------------ATTCTC-CCC--- -------------ACACCCTT---------AAGAATGTACTTTGTA-------------- ------------------------------------------------------------ -----------------------CACCTATCCC-AAACCTATAAGAACTAATGATAAT-- -------CT-C---ACCACCCTTTGCTGACTCCTTTTTCGGGTTCAGCCCCCCTGCACCC AGGTGA-----AA--TAAAAAGCCTTGTTGCTCACACAAAGCCTGC-TC---A-TGGTCT CTTTACACAGATGTGCATGA--C------ >LTR7B_chr11_Sltr_243__chr11_3777420337774621_+_ -GTCAGGCTTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CATGTGAC---------------------------------------------CTGCACT TATATATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAACAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCA---TGATTAGTTCCTGCCCCACC CTAACTGAT------ACGAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------ATA--------TT----------------------------------- ------------------------CTCCCCCGCCCTTAAG--------------AAGGTA CTT-------------------------------TGTAA--T------------------ -----------------------------------------------ATTCT--CCC--- -------------ACACACTT---------AAGAATGTACTTTGTA-------------- ------------------------------------------------------------ -----------------------CACCTATCCC-AAACCTATGAGAACTAATGATAAT-- -------CC-C---ACCACCCTTTGCTGACTCCGTTTTTGGACTCAGCCCGCCTACACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTTACACAAAGCCTGC-TT---CGTGGTCG CTTCACACAGATGCGCGTGA--CA----- >LTR7B_chr10_Sltr_189__chr10_60080346008421_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------TTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC CTAACTGAT------ACGAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------ATG--------TT----------------------------------- ------------------------CTCCCCTGACCTTAAG--------------AAGGTA CTT-------------------------------TGTAA--T------------------ -----------------------------------------------ATTCTC-CCC--- ---------------ACCCTT---------GTGAATGTACTTTGTA-------------- ------------------------------------------------------------ -----------------------TGCCTATCCC-AAATCTATAAGAACTAATGATAAT-- -------CC-C---ACCACCCTTTGCTGAATCCTTTTTCGGACTCAGCCCGCCCGCACCT AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TT---GGTGGTCT CTTCACACGGATGCGTGTGA--CA----- >LTR7B_chr11_Sltr_280__chr11_9387936193879814_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAT---------------------------------------------CTGCACA TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAA------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCATGATTGTGATTTGTTCCTGCCCCACC CTAACTGAT------ACGAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------ATA--------TT----------------------------------- ------------------------CTCCCCCACGCTTAAG--------------AAGGTA CTT-------------------------------TGTAA--T------------------ -----------------------------------------------ATTCTC-CCC--- ---------------ACGCTT---------GAGAATGTCCTTTGTA-------------- ------------------------------------------------------------ -----------------------TGCCTATCCC-AAACCTATAAGAACTAATGATTAT-- -------CC-C---ACCACCCTTTGCTGACTCCTTTTTCGGACGCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TT---GGTTGTCT CTTCACATGGATGCACGTGA--CA----- >LTR7B_chr3_Sltr_1023__chr3_155021306155021691__ TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCTATCATATCC CCTGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGGAG------------ ------------------------------------------------------------ ----------ATCCACAAAATAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC CTAACTGAT------ATGAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------ATA--------TT----------------------------------- ------------------------CTTGCCCGCCCTTAAG--------------AAGTTA CTT-------------------------------TGTAA--T------------------ -----------------------------------------------ATTCTC-ACT--- ---------------GCCCTT---------GAGAATGTACTTTGTA-------------- ------------------------------------------------------------ -----------------------TGCCTATCCC-AAACCTGTAAGAACTAATGATAAT-- -------CC-C---ACCACCCTTTGCTGACTCCTTTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TT---GGTGGTCT CGTCACACGGATGCATGTGA--C------ >LTR7B_chr5_Sltr_1360__chr5_6292871262929099_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGAATG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAATAAGTGAAAATAGT-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC CTAACTGAT------ATGAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------ATA--------TT----------------------------------- ------------------------CTGCCCCACCCTTAAG--------------AAGGTA CTT-------------------------------CGTAA--T------------------ -----------------------------------------------ATTCTC-TCC--- ---------------ACCCTT---------AAGAAGGTGCTTTGTA-------------- ------------------------------------------------------------ -----------------------TGCCTATCCC-AAACCTATAAGAACTAATGATAAT-- -------CC-C---ACAACCCTTTGCTGACTCCTTTTTCGGACTCAGCCCCCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TT---GGTGATCT CTTCACATGCATGCATGTGA--CA----- >LTR7B_chr5_2ltr_int_fr_1283__chr5_115650820115651207_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CAAAGCCAGCATATGC CCTGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGACCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGAGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTGCCCCATC CTAACTGAC------ATGAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------ATA--------GT----------------------------------- ------------------------CTCCCCTGCCCTTAAG--------------AAGGTG CTT-------------------------------TGTAA--T------------------ -----------------------------------------------ATTCTC-CCC--- -------------AG-CCCTT---------AAGAATGTACTTTGTA-------------- ------------------------------------------------------------ -----------------------TGCCTATCCC-AAACCTATAAGAACTAATGATAAT-- -------CC-T---ACTACCCTTTGCTGACTTCTTTTTTGGACTCAGCCCGCCGGCACCC AGGTGA-----AA--TAAACAGCCTTATTGCTCACACAAAGCCTGC-TT---GGTGCTCT CTTCACACAGACGCGTGTGA--CA----- >LTR7B_chr11_Sltr_252__chr11_6082375760824299_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATTTTC CCTGTGAC---------------------------------------------CTGCATG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGT-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC CTAACTGAC------ACAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------ATA--------TT----------------------------------- ------------------------CTCCCCTGCCCTTAAG--------------AAGGTA CTT-------------------------------TGTAA--T------------------ -----------------------------------------------ATTTAC-CCT--- -------------A--CCCTT---------AAGAAGGTACTTTGTT-------------- ------------------------------------------------------------ -----------------------CGCCTATCCC-AAACCTGTAAGAACTAATGATAAT-- -------CC-C---ACCACCCTTTACTGACTCCTTTTTCGGACTCAGCCCACCTGCACCT GGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTGT-TT---GATGGTCT CTTCACACGGACGCGCATGA--CA----- >LTR7B_chr2_Sltr_854__chr2_3473677334737161_+_ -GTCAGGCCTCTGAGTCTAAG-----------------------CTAAGCCATCGTATCC CCTGTGAC---------------------------------------------ATGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC CTAACTGAT------ACGAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------ATA--------TT----------------------------------- ------------------------CTCCCCTGCCCTTAAG--------------AAGGTA CTT-------------------------------TGTAA--T------------------ -----------------------------------------------ATTTTC-CCC--- -------------A--CCCTT---------GAGAATGTACTTTGTA-------------- ------------------------------------------------------------ -----------------------CGCCTATCCC-AAATCTATAAGAACTAATGATAAT-- -------CC-C---ACCACCCTTTGCTGACTCCTTTTTTGGACTCAGCCCACCTGCGCCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTGT-TT---GGTGGTCT CTTCACATGGACGCGCATGA--CA----- >LTR7B_chr16_Sltr_fr_531__chr16_1026042210260806__ -GTCAGGTCCCTGAGCCCAAG-----------------------CTAAGCCATCGTATCC CCTGTGAC---------------------------------------------CTGCACG TATATATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------AGCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC CTAACTGAT------AC-AC---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------ATA--------TT----------------------------------- ------------------------CTCCCCCGCCCTTAAG--------------AAGGTA CTT-------------------------------TGTAA--T------------------ -----------------------------------------------ATTCTC-CCC--- -------------G--CCCTT---------AAGAATATACTTTGTA-------------- ------------------------------------------------------------ -----------------------CGCCTATCCT-AAACCTA-AAGAACTAGTTATAAT-- -------CC-C---ACCAGCCTTTGCTGACTCCATTTT-GGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTGT-TT---GATGGTCT CTTCACACGGACGCGTGTGA--C------ >LTR7B_chr1_2ltr_int_fr_99__chr1_3790781537908201_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCATG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAACTGAAAACAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC CTAAGTGAT------AGGCT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------ATG--------TT----------------------------------- ------------------------CTCCCCCGCCCTTAAG--------------AAGGTA CTT-------------------------------TGTAA--T------------------ -----------------------------------------------ATTCTC-CCC--- -------------CG-CCCTT---------AAGAATGTACTTTGTA-------------- ------------------------------------------------------------ -----------------------CACCTATCCC-AAACGTATAAAAACTAATGATAAT-- -------CC-C---ACCAACCTTTGCTGACTCCTTTCTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCCTGTTGCTCACACAAAGCCTG--TT---GGTGGTCT CTTCACAAGGATGCGTGTGA--CA----- >LTR7B_chrY_2ltr_int_fr_1873__chrY_1005337010053754__ TGTCAGATCTCTGAGCCCAAG-----------------------CTAAGTCATCATATCA CCTGTGAC---------------------------------------------CTGCAAG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTGCTGCCCCACC CTAACTGAT------ATGAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------ATA--------TT----------------------------------- ------------------------CTCCCTCTCCCTTGAG--------------GAGGTA CTT-------------------------------TGTAA--T------------------ -----------------------------------------------ATTCTC-CCC--- -------------CG-CCCTT---------AAGAAGGTACTTTGTA-------------- ------------------------------------------------------------ -----------------------CACCTATCCC-AAACCTATAAGAACTAATGATAAT-- -------CC-C---ACAACCCTCAGCTGACTCCTTTTTCAGACTCA----GCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TT---GGTGGTCT CTTCACACGGACATGCATGA--C------ >LTR7B_chr6_Sltr_fr_1460__chr6_4337019843370576_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTATGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAGGCAACTGAAG------------ ------------------------------------------------------------ ----------AGCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC CTAACTGAC------AGGAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------ATA--------TT----------------------------------- ------------------------CTCCCCCTCCCTTAAG--------------TAGGTG CTT-------------------------------TGTAA--T------------------ -----------------------------------------------ATTCTC-CCC--- -------------CG-CCCTT---------AAGAATGTACTTTGTA-------------- ------------------------------------------------------------ -----------------------CACCTATCCC-AAACCTATAAGAACTAATGATAAT-- -------TC-C---ACCACCCTCTGCTGACTCCTTTTTCGGACTCAACCCGCCTGCACCC AGGTAA-----GA--TAAACAGCCTTGTTGCTCACACGAAGCCTG--TT---GGTGGTCT CTTCACACG-------------------- >LTR7B_chr10_2ltr_int_fr_177__chr10_3213846432138852__ TGCCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTAAC---------------------------------------------CTGCATG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATTCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTGCCCTACC CTTACTGAT------AC-AT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------ACA--------TT----------------------------------- ------------------------CTGCCCCACCCTTAAG--------------AAGGTA ATT-------------------------------TGTAA--T------------------ -----------------------------------------------ATTCTC-CCC--- -------------AG-CCCTT---------AAGAAGGTACTTTGTA-------------- ------------------------------------------------------------ -----------------------TGCCTATCCC-AAACCTATAAGAACTAATGATAAT-- -------CC-C---ACCACCCTTTGCTGACTCCTTTTTTGGACTCAGCCTGCCTGCACCC AGGTGA-----AA--TATACAGCCTTGTTGCTCACACAAAGCCTG--TT---GGTGGTCT CTTCACACGGACCCGCGTGA--C------ >LTR7B_chr4_2ltr_int_fr_1231__chr4_408910409299__ TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCATG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCATCATTGTGATTTGTTCCTGCCCCACC CTAACTGAT------AT-AT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------T----------------------------------- ------------------------CTCCCCCACCCTTAAG--------------AAGGTA CTT-------------------------------TGTAA--T------------------ -----------------------------------------------ATTCTC-CCC--- -------------AG-CCCTT---------AAGACGGTACTTTGTA-------------- ------------------------------------------------------------ -----------------------TGCCTATCCC-AAACCTGTAAGAACTAATGATAAT-- -------CC-C---ACCACCCTTTGCTGACTCCTTTTTTGGCCTCAGCCCATCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACA-AGCCTG--TT---GGTGGTCT CTTCATATGGACACGCCTGA--C------ >LTR7B_chr1_2ltr_int_fr_94__chr1_3020367830204065_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------TTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAAGAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC CTAACTGAT------ACGAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------ATA--------GT----------------------------------- ------------------------CTCCCCCACCATTAAT--------------AAGGTA CTT-------------------------------TGTAA--T------------------ -----------------------------------------------AGTCTC-CCC--- --------------G-CCCTG---------GAGAATGTACTTTGTA-------------- ------------------------------------------------------------ -----------------------CGCCTATCCC-AAACCTATAAGAACTAATGATAAT-- -------CC-C---ACCACCCTTCGCTGACTCCTTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AG--TAAACAGGCTTGTTGCTCACACAAAGCTTG--TT---GGTGGTCT CTTCACATGGACTCATGTGA--CA----- >LTR7B_chr2_Sltr_763__chr2_121177498121177883__ TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCATG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGCGATTTGTTCCCGCCCCACC CTAACTGAT------ACGAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------A----------GT----------------------------------- ------------------------CTCCCCCACCCTTAAG--------------AAGGTA CAT-------------------------------TGTAA--T------------------ -----------------------------------------------ATTCTC-CCC--- -------------TG-CCCTT---------AAGAATGTATTTTGTA-------------- ------------------------------------------------------------ -----------------------CGCCTATCCC-AAACCTATAAGAACTAATGATAAT-- -------CC-C---ACCACAGTTTGCTGACTCTCTTTTCTGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGTCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACACGCGTGA--C------ >LTR7B_chr1_2ltr_int_fr_51__chr1_210187604210188020_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACA TGTACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAATGGAAG------------ ------------------------------------------------------------ ----------ATCCATAAAAGACGTGAAAACAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCGTGTCCCACC CTAACTGAT------AC-AT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------ATA--------TT----------------------------------- ------------------------CTCCCCCGCCCTTAAG--------------AAGGTA CTT-------------------------------TGTAA--T------------------ -----------------------------------------------ATTCTT-CCC--- -------------CG-CCCTT---------AAGAATGTACTT------------------ ------------------------------------------------------------ ----------------------------ATCCC-AAACCTATAAGAACTAATGATAAT-- -------CC-C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC AGGTGA-----AA--TAAATAGCCTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCGTGA--CA----- >LTR7B_chr12_Sltr_fr_385__chr12_84949088495326_+_ -GTCAGGCCTCTGAGCTTAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACA TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAATTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTGTCCCACC CTAACTGAT------AC-AT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------ATA--------TT----------------------------------- ------------------------CTCCCCCACCTTTAAG--------------AAGGTA CTT-------------------------------TGTAA--T------------------ -----------------------------------------------ATTCTT-CCC--- -------------CG-CCCTT---------AAGAATGTACTTTGTA-------------- ------------------------------------------------------------ -----------------------CACCTATCCC-AAACCTATAAGAACTAATGATAAT-- -------CC-C---ACCACCCTTTGCTGACTTTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACATGCATGA--------- >LTR7B_chr10_Sltr_fr_164__chr10_120106603120107028__ TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAATTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----TTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTGTCCCACC CTAAATGAT------AC-AT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------ATA--------TT----------------------------------- ------------------------CTCCCCCACCCTTAAG--------------AAGGTA CTT-------------------------------TGTAA--T------------------ -----------------------------------------------ATTCTT-CCC--- -------------TG-CCCTT---------AAGAATGTACTTTCTA-------------- ------------------------------------------------------------ -----------------------TGCCTATCCC-AAACCTATAAGAACTAATGATAAT-- -------CC-C---ACCACACTTTGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GCTGGTCT CTTCACACAGACATGTGTG---------- >LTR7B_chr16_2ltr_int_fr_554__chr16_3085945230859878_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCACATCC CCTGTGAC---------------------------------------------CTGCATG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC GTT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTGCCCCACT CTAACTGAT------ACGAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------ATA--------TT----------------------------------- ------------------------CTCCCCCACCTTTAAG--------------AAGGTA CTT-------------------------------TGTAA--T------------------ -----------------------------------------------ATTCTT-CCC--- -------------TG-CCCTT---------GAGAATGTACTTTGTA-------------- ------------------------------------------------------------ -----------------------CACCTATCCC-AAACCCATAAGAACTAATGATAAT-- -------CC-C---ACCACCCTTTGCTGATTCTGTTTTCGGACTCTGCCAACCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAAATGCACATGA--CA----- >LTR7B_chr10_2ltr_int_fr_198__chr10_8656630186566658__ TGTCAGGCCTCTGAGCTCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TGTACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGACGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCTTGCCCAACC CCAACTGAT------ATGAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------ATA--------TT----------------------------------- ------------------------CTCCCCTGCCCTTAAG--------------AAGGTA C----------------------------------------------------------- ------------------------------------------------------------ ----------------------------------------TTTGTA-------------- ------------------------------------------------------------ -----------------------CACATATCCC-AAACCTGTAAGAACTAATGATAAT-- -------TC-C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGCCT CTTCACACAGACATGTGTGA--C------ >LTR7B_chr10_Sltr_160__chr10_110371739110372090__ TGTCAGGCCTTTGAGCC-AAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------TTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAAAAGTGAAAATAGC-------------------------- ---------------------------------T----------TTAA----CCGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC CTAAGAGAT------ACAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------ATA--------TT----------------------------------- ------------------------CTCCCCCACCCTTGAG--------------AATGTA C----------------------------------------------------------- ------------------------------------------------------------ ----------------------------------------TTTTTA-------------- ------------------------------------------------------------ -----------------------TGCCTATCCC-AAACCTGTGAGAACTAATGATAAT-- -------CC-C---ACCACCCTTTGCTGACTCCTTTTTCGGACTCAGCCTGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--T-T--GGTGGCCT CTTCACACGGACGTGAGGGA--C------ >LTR7B_chr22_Sltr_fr_969__chr22_4513043645131006_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAC----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC CT----GAT------ACGGT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------ATA--------TT----------------------------------- ------------------------CTCCCCCGCCCTTAAG--------------AAGGTA C----------------------------------------------------------- ------------------------------------------------------------ ----------------------------------------TTTATA-------------- ------------------------------------------------------------ -----------------------CGCCTATCCC-AAACCCGAGACAACTAATGATAAT-- -------CC-C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGTTCCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--T-T--GGTGGTCT CTTCACACGGACGCGCGTGA--CA----- >LTR7B_chr1_Sltr_83__chr1_237488520237488901_+_ -GTCAGGCCTTTGAGCCCA---------------------------AAGGCTGGATGTAC ACTGTGAC---------------------------------------------CTGCACG TGTACATCCACA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAGGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CCGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGCTCCTGTCCCACC CTAACTGAT------AC-AT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------ATA--------TT----------------------------------- ------------------------CTCCCCCACCCTTAAG--------------AAGGTA CTT-------------------------------TGTAA--T------------------ -----------------------------------------------ATTCTC-CCC--- -------------CG-CCCTT---------AAGAATGTACTTTGTA-------------- ------------------------------------------------------------ -----------------------CACCTACCCC-AAACCTATAAGAACTAATGATAAT-- -------CC-C---ACCATCCTTCGCTGACTCCTTTTTCAGACTCAGCCCGCCTGCACTC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TT---GGTGGACT CTTCTCACGGACGCGCGTGA--CA----- >LTR7B_chr19_Sltr_695__chr19_4894989548950286__ TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCGTCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCCGGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATGGTGATTTGTTCCTGCCCCACT CTAACTGAT------ATGAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------ATA--------TT----------------------------------- ------------------------CTCCCCCCCACTTAAG--------------AAGGTA CTT-------------------------------TGCAA--T------------------ -----------------------------------------------ATTCTC-CC---- -------------CA-CTCTT---------GAGAATGTAATTTGTA-------------- ------------------------------------------------------------ -----------------------CACCTATCCC-AAACCTATAAGAACTAATGATAAT-- -------CC-C---ACCACCCTTTGCTGACTCCCTTTTCAGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGTCTG--TTA--GGTGGTCT CTTTGCACGGACACGTGTGA--C------ >LTR7B_chr18_2ltr_int_fr_632__chr18_4246184142462228_+_ -GTCAGGCCTTTGAGCCCAAG-----------------------CTAAGCCATCATACC- CCTGTGAC---------------------------------------------CTACACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAATTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAATAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CGGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCCACCCCACC CTAACTGAT------AC-AT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------ATA--------TT----------------------------------- ------------------------CTCCCCCACCCTTAAG--------------AAGGTA CTT-------------------------------CGGAA--T------------------ -----------------------------------------------GTTCTC-TCC--- -------------CG-CTCTT---------AAGAATGTGCTTTGTA-------------- ------------------------------------------------------------ -----------------------TGCCTATCCC-AAACCTGTAAGAACTAATGATAAT-- -------CC-C---ACCACCCTTTGCTGACTCTTTTTTTTGACTCAGCCCATCTGCACTC AGGTGA-----AA--TAAACAGCCTTGTTACTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGATGTGCGTGA--CA----- >LTR7B_chr5_2ltr_int_fr_1359__chr5_5702206857022454__ TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCACATCT CCTGTGAC---------------------------------------------CTGCATG TATACATCCAGA------------------------------------------------ -----------------------------CGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCAACATTGTGATTTGTTTCTGCCCCACC CTAACTGAT------ACGAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------ATA--------TT----------------------------------- ------------------------CTACCCCCACCTTAAG--------------AAGGTA CTT-------------------------------TGTAA--T------------------ -----------------------------------------------ATTCTC-CCC--- -------------CG-CCCTT---------GAGAATGCGCTTTGTA-------------- ------------------------------------------------------------ -----------------------TGCCTATCCC-AAACCTATAAGAACTAATGATAAT-- -------CC-C---ACCACCCTTTGCTGACTCCTTTTTCTGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTACTCACACAAAGCCCA--TT---GGTGGTCT CTTCACATGGACGTGCGAGA--C------ >LTR7B_chr19_2ltr_int_fr_709__chr19_5512280555123222_+_ -GTCGGGCCTCCGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGGC---------------------------------------------CTGCACA TATACATGAAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCAAAAAAGAAGCGAAAATAGT-------------------------- ---------------------------------C----------TTAC----CTGATGAC ATT--------------------------------------------------------- -------------------------------CTACCATTGTGATTTGTTCCCGCCCCACC CTAACTGAT------ACGAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------ATA--------TT----------------------------------- ------------------------CTGCCCCGCCTTTAAG--------------AAGGTA CTT-------------------------------TGTAA--T------------------ -----------------------------------------------ATTCTC-CCT--- --------------G-CCCTT---------GAGAATGTACTTTGTA-------------- ------------------------------------------------------------ -----------------------CGCCCATCCC-AAACCTATAAGAACTAATGATAAT-- -------CC-C---AC----CTTTGCTGACTCTGTTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAATAGCCTTTTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGTGCGTGA--CA----- >LTR7B_chr12_Sltr_295__chr12_110408746110409133_+_ -GTCAAGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGGC---------------------------------------------CTGCACG TACATATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAATTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAGGTAAAAATAGA-------------------------- ---------------------------------C----------TTAA----CTGATAAC GAT--------------------------------------------------------- -------------------------------ACACCATTGTGATTTGTTCCTGCCCCACC CTAACTGAT------ATGAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------ATA--------GT----------------------------------- ------------------------CTACCCTGCCCTTAAG--------------AAGGTA CTT-------------------------------TGTAA--T------------------ -----------------------------------------------ATTCTC-CCC--- -------------CT-CCCTT---------AAGAATATACTTTGTA-------------- ------------------------------------------------------------ -----------------------TGCCTATCCC-AAACCTATAAGAACTAATGATAAT-- -------CC-C---ACCACCCTTAGCTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC AGGTGA-----AA--TAAACAGACTTATTGATCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGTGCATGA--CA----- >LTR7B_chr12_Sltr_292__chr12_108444573108444956__ TGTCAGACCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCATG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGGAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATGCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCCACTCCACC CTAAGTGAT------A-------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ -------------TA--------TT----------------------------------- ------------------------CTCCCCCGCCCTTGAG--------------AAGGTG CTT-------------------------------TGTAA--T------------------ -----------------------------------------------ATTCTC-CC---- -------------CG-CCCTT---------GAGAATGTACTTTGTA-------------- ------------------------------------------------------------ -----------------------CGTCTACCCC-AAACCTATAAGAACTAATGATAAT-- -------CC-C---ACTATCCTTTGCTGACTCCTTTTTTGGACTCAGCTCGCCTGCACCC AGGTGA-----AA--TA----GCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTGT CTCCACATGGACGTGCGTGA--C------ >LTR7B_chr19_Sltr_fr_705__chr19_5454498954545455_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCCTATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATTCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCACTGTGACTTGTTCCCGCCCCA-- CTAACTGAT------ATATT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------A----------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ --------------------------------------A--------------------- ----------------------------- >LTR7B_chr5_Sltr_fr_1300__chr5_126667096126667814__ -GTCAGGCCTCTCAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCATG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------AACTATGAAA---------------------------------------- ------------------------------------------------------GATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATCTGTTCCTGCCCCACC CTAACTGAT------CCAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------ATA--------TT----------------------------------- ------------------------CTCCCCCACCCTTAAG--------------AAGGTA CTT-------------------------------TGTAA--T------------------ -----------------------------------------------ATTCTC-CC---- -------------CG-ACCTT---------GAGAATGTACTTTGTG-------------- ------------------------------------------------------------ -----------------------CACTTATCCC-AAACCTATAAGAACTAATGATAAT-- -------CC-C---ACCACTCTTTGCTGACTCTCTTTTTGGACTCAGCTCACCTGCACCC AGGTGA-----AA--AA----GCTTTATTGCTCAAAAAA--------------------- ----------------------------- >LTR7B_chr2_Sltr_907__chr2_8920319489203580__ TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCACATCC CCTGTGAC---------------------------------------------CTGCATG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAACAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAATAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTTTTCCTGCCCCACC CTAACTGAT------ACGAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------A----------------------------------------------- --------------------------------CCCTTAAA--------------AAGGTA CTT-------------------------------TGTAA--T------------------ -----------------------------------------------ATTCTC-CC---- -------------CG-CCTTT---------GAGAATGTACTTTGTA-------------- ------------------------------------------------------------ -----------------------TGCCTATCCC-AAACCTATATGAGCTAATAATAAT-- -------CC-C---ACCACCCTTTGCTGACTCCTTTTTCGGAC-CAGCCCGCCTGCACTC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAGAGCCTG--TT---GGTGGTCT CTTTACATGGACACACGTGA--C------ >LTR7B_chr2_Sltr_908__chr2_8997920589979591_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCACATCC CCTGTGAC---------------------------------------------CTGCATG TATCCATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAACAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAATAAGCGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTTTTCCTGCCCCACC CTAACTGAT------ACGAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------A----------------------------------------------- --------------------------------CCCTTAAA--------------AAGGTA CTT-------------------------------TGTAA--T------------------ -----------------------------------------------ATTCTC-CC---- -------------CG-CCTTT---------GAGAATGTACTTTGTA-------------- ------------------------------------------------------------ -----------------------TGCCTATCCC-AAACCTATATGAGCTAATAATAAT-- -------CC-C---ACCACCCTTTGCTGACTCCTTTTTCGGAC-CAGCCCGCCTGCACTC AGATGA-----AA--TAAACAGCCTTGTTGCTCACACAGAGCCTG--TT---GGTGGTCT CTTTACACGGACACACGTGA--CA----- >LTR7B_chr5_Sltr_1347__chr5_2346785923468326__ TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CTTGTGAC---------------------------------------------CTGCATG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATACC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCAATGCGATTTGTTCCTGCCCCACC CTAACTGAT------ACAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------ATA--------TT----------------------------------- ------------------------CTCCCCCACCCTTAAG--------------ACGGTA TTT-------------------------------TGCAA--T------------------ -----------------------------------------------ATTCTC-CC---- -------------TG-CCCTT---------GAGATTGTACTTTGTA-------------- ------------------------------------------------------------ -----------------------TGTCTATCCC-AAACCTGTAAGAACTAATGATAGT-- -------CC-C---AGCACCCTTTACTGACCCCTTTTTCGGACTCAGCCCACCTGCACCC ACGTGA-----AA--TAAAGAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTTACATGGATGCACGTCA--C------ >LTR7B_chr6_Sltr_1449__chr6_2648986526490252_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGACCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAACTAGC-------------------------- ---------------------------------T----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CTACCATTGTGATTTGTTGCTGCCCCACC CTAACTGAT------ACGAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------ATA--------GT----------------------------------- ------------------------TTCCCCGGCCCTTAAG--------------AAGGTA CTT-------------------------------TGTAA--T------------------ -----------------------------------------------ATTCTC-CCC--- -------------CA-CCCTT---------AAGAATGTACTTTGTA-------------- ------------------------------------------------------------ -----------------------CACCTATCCC-AAACCTATAAGAACTAGTGATAAC-- -------CC-C---ACCACCCTTTGCTGACTCATTTTTCGGACTCAGCTCGCCTGCACCC AGGTGA-----AA--TAAATAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACAGTGACAGGTGTGA--CA----- >LTR7B_chr19_Sltr_670__chr19_2191858721919010_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACCGAAT------------ ------------------------------------------------------------ ----------ATCCACAAAGGAAGTGAAAATAGC-------------------------- ---------------------------------C----------GTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC CTAACTGAT------ACGAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------ATA--------TT----------------------------------- ------------------------CTCCCCTGCCCTGAAG--------------AAGGTA CTT-------------------------------TGTAA--T------------------ -----------------------------------------------AGTCTCTCCC--- -------------CA-CCCGT---------GAGAATGTACTTTGTA-------------- ------------------------------------------------------------ -----------------------CACCTATCCC-AAACCTATAAGAACTAATGATAAT-- -------CC-C---ACCACGCTTTGCTGACTCCTTTTTTGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACAGGGATGTGCATGA--CA----- >LTR7B_chr4_Sltr_1238__chr4_6235460362354957__ TGTCAGGCCTCTGAGCCCAAA-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CAGCATG TGTACATCCAGA------------------------------------------------ -----------------------------TGTCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCACTGTGATTTGTTCCTGACCCACC CTAACTGAT------ACGAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------ATA--------TT----------------------------------- ------------------------CT---------------------------------- ------------------------------------------------------------ -----------------------------------------------------TCCC--- -------------CG-CCCTT---------AAGAAGGTACTTTGTA-------------- ------------------------------------------------------------ -----------------------CGCCCATCCT-AAACCTATGAGAACTAATGATAAT-- -------CC-C---ATCACCCTTTGCTGACTCCTTTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TT---GGTGGTCT CTTCACAGCGACGCGCATGA--C------ >LTR7B_chr1_2ltr_int_fr_116__chr1_5342433753424766_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATTGCATCC CCTATGAC---------------------------------------------TTGCACA TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATCGTGATTTTTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------------------------------------------- ------------------------------------------------------------ CTTTGTAATCTCCCCCACCCTTAAGAAGGT------------------------------ ---------------------------------------------------------TCT TTGTAA-TCTCCCCA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCT-G CCCGCAAAACATTGCTCTTAACTTCAC--------------------------------- -----------------------CGCCTATCCCAAAACCTGTAAGAACTAATGATAAT-- -------C--C---ACCACCCTTTGCTGACTCTCTTTTCAGACTCAGCCCACCTGCACAC AAGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGCGCATAA--------- >LTR7B_chr6_2ltr_int_fr_1401__chr6_126848846126849274_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATGGCATCC CCTGTGAC---------------------------------------------TTGCACA TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------------------------------------------- ------------------------------------------------------------ CTTTGTAATCTCCCCCACCCTTAAGAAGGT------------------------------ ---------------------------------------------------------TCT TTGTAA-TCTCCCCA-TCCTT---------GAGAATGTACTTTGTGAGATCCACCCCT-G CCCGCAAAACATTGCTCTTAACTTCAC--------------------------------- -----------------------CGCCTATCCCAAAACCTATAAGAACCAATGATAAT-- -------C--C---ACCACTCTTTGCTGACTCTCTTTTCAGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGCGCATGA--------- >LTR7B_chr9_2ltr_int_fr_1728__chr9_9453987194540297_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTACACA TATACACCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------------------------------------------- ------------------------------------------------------------ CTTTGTAATCTCCCCCACCCTTAAGAAGGT------------------------------ ---------------------------------------------------------TCT TTGTAA-TCTCCCCA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCTT-G CCCGCAAAACATTGCTCTTAACTTCAC--------------------------------- -----------------------CGCCTATCCCAAAACCTGTAAGAACTAATGATAAT-- -------C--C---ACCACTCTTTGCTGAC--TCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AG--TAAACAGCCATGTTGCTCACACAAAGTCTC--TTT--GGTGGTCT CTTCACACGGACGCGCATGA--------- >LTR7B_chr16_Sltr_fr_560__chr16_5667432656674780__ TGTCAGGCCTCTGAACCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACA TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATC--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTTCCCCGCC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------------------------------------------- ------------------------------------------------------------ CTTTGTAATCTCCCCCACCCTTAAGAAGAT------------------------------ ---------------------------------------------------------ACT TTGTAA-TCTCCCCA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCT-G CCCACAAAACATTGCTCTT-----CAC--------------------------------- -----------------------CGCCTGTCCCAAAACCTACAAGAACTAATGATAAT-- -------C--C---ACCACCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGCGAATG---------- >LTR7B_chr13_Sltr_fr_408__chr13_4661670546617133__ TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------------------------------------------- ------------------------------------------------------------ CTTTGTAATCTCCCCCACCCTTAAGAAGGT------------------------------ ---------------------------------------------------------TCT TTGTAATTCTCCTCA-CCCTT---------GAGAATGTACTTTGTGAGATCCACTCCT-G CCCGCAAAACATTGCTCTTAACTTCAC--------------------------------- -----------------------CGCCTATCCCAAAACCTATAAGAACTAATGATAAT-- -------C--C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACCAGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGAACGCGCATG---------- >LTR7B_chr13_Sltr_fr_409__chr13_4662627946626706_+_ -GTCAGACCCC-GAGCCCAAG-----------------------CCAAGCCATCACATCC CCTGTGAC---------------------------------------------TTAAACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAGAGAAGTAAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------------------------------------------- ------------------------------------------------------------ CTTTGTAATCTCCCCCACCCTTAAGAAGGT------------------------------ ---------------------------------------------------------ACT TTGTAATTCTCCTTA-CCCTT---------GAGAATGTACTTTGTGAGATCCACTCCT-G CCCGCAAAACATTGCTCTTAACTTCAC--------------------------------- -----------------------CGCCTATCCCAAAACCTATAAGAACTAATGATAAT-- -------C--C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CCTCACATGGACGTGCATGA--------- >LTR7B_chr5_2ltr_int_fr_1309__chr5_136301374136301833_+_ -GTCAGGCCTCTGAACCCAAG-----------------------CCAAGCCATCACATCC CCTGTGAC---------------------------------------------TTGTACG TATACATCCAGA------------------------------------------------ -----------------------------TAGCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAATAAT-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------------------------------------------- ------------------------------------------------------------ CTTTGTAATCTCCCCCACCCTTAAGAAGGT------------------------------ ---------------------------------------------------------ACT TTGTAATCTCCCCAA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCT-G CCCGCAAAACATTGCTCTTAACTTCAC--------------------------------- -----------------------CGCCTATCCCAAAACCTATAAGAACTAATGATAAT-- -------C--C---ACCACCCTTCACTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGTTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACACGCATGA--------- >LTR7B_chr18_Sltr_fr_621__chr18_2723059227231051_+_ -GTAAGGCCTCTGAACCCAAG-----------------------TCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------------------------------------------- ------------------------------------------------------------ CTTTGTAATCTCCCCCACCCTTAAGAGGGT------------------------------ ---------------------------------------------------------ACT TTGTAATCTCCCCTA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCT-G CCCGCAAAACATTGCTCTTAACTTCAC--------------------------------- -----------------------CGCCTATCCCAAAACCTATAAGAACTAATGATAAT-- -------C--C---ACCACCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGACGTGCATGA--------- >LTR7B_chr1_Sltr_fr_22__chr1_158102432158102891__ TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTAAC---------------------------------------------TTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCAACAAAAGAAGTAAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGCTGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------------------------------------------- ------------------------------------------------------------ CTTTGTAATCTCCCCCACCCTTAAGAAGGT------------------------------ ---------------------------------------------------------ACT TTTTAATCTCCCCCA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCT-G CCCGCAAAACATTGCTCTTAACTTCAC--------------------------------- -----------------------TGCCTATCCCAAAACCTGTAAGAACTAATGATAAT-- -------C--C---ACCACCCTTTGCTGACTCTCTTTTAGGACTCAGCCTGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--AGTGGTCT CTTCACACAGATGCACATG---------- >LTR7B_chr12_Sltr_fr_293__chr12_110049329110049773__ TGTGAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------------------------------------------- ------------------------------------------------------------ CTTTGTAATCTCCCCCACCCTTA---AGGT------------------------------ ---------------------------------------------------------ACT TTGTAATCTCCCCCA-CCCTT---------GAGAATGTACTTCGTGAGATCCACCCCT-G CCCGCAAAACATTGCTCTTAACTTCAC--------------------------------- -----------------------CGCCTATCCCAAAACCTGTAAGAACTAATGATAAT-- -------C--C---ACCACCCTTTGCTTACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACA---------------------- >LTR7B_chr14_Sltr_fr_463__chr14_5067913950679598__ TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACATGCAGA------------------------------------------------ -----------------------------TGTCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTTCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------------------------------------------- ------------------------------------------------------------ CTTTGTAATCTCCCCCACCCTTAAGAAGGT------------------------------ ---------------------------------------------------------ACT TTGTAATCTCCCCCA-CCCTT---------GAGAATGTACTTTGTGAGATCCACTCCT-G CCCGCAAAACATTGCTCTTAACTTCAC--------------------------------- -----------------------CGCCTATCCCCAAACCTATAAGAACTAATGATAAT-- -------C--C---ACTACCCTTTGCTGACTCTCTTTTCGGACTCAGCCTACCTGCACAC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAGGCCTG--TTC--GGTGGTCT CCTCACACAGACGCACATG---------- >LTR7B_chr4_Sltr_fr_1215__chr4_1902794319028402__ TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCTGTCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCGCAAAAGAAGTAAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------------------------------------------- ------------------------------------------------------------ CTTTGTAATCTCCCCCACCCTTAAGAAGGT------------------------------ ---------------------------------------------------------ACT TTGTAATCTCCCCCA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCT-G CCCGCAAAACATTGCTCTTATCTTCAC--------------------------------- -----------------------CGCCTATCCCAAAACCTATAAGAACTAATGATAAT-- -------C--C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCTTCCTGCACCC AGGTGA-----AA--TAAACAACCATGTTCCTCACACGAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATG---------- >LTR7B_chrX_Sltr_fr_1741__chrX_109829043109829502_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCATG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAAGAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTTCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------------------------------------------- ------------------------------------------------------------ CTTTGTAATCTCCCCCACCCTTAAGAAGGT------------------------------ ---------------------------------------------------------ACT TTGTAATCTCCCCCA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCT-G CCCGCAAAACATTGCTCTTACCTTCAC--------------------------------- -----------------------CGCCTATCCCAAAACCTATAAGAACTAATGATAAT-- -------C--C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACCGACGCGCATGA--------- >LTR7B_chr3_Sltr_fr_1056__chr3_182742731182743158__ TGTCAGGCCTTTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACATTCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------------------------------------------- ------------------------------------------------------------ CTTTATAATCTCCCCCACCCTTAAGAAGGT------------------------------ ---------------------------------------------------------TCT TTGTAATTCTCCCCA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCT-G CCCGCAAAACATTGCTCTTAACTTCAC--------------------------------- -----------------------GGCCTATCCCAAAACCTATAAGAACTAATGATAAT-- -------C--C---ACCAC-CTTTGCTGACTCTCTTTTTGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACAAAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACACGCACG---------- >LTR7B_chr6_2ltr_int_fr_1406__chr6_131402925131403357_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCATG TATACATCCATA------------------------------------------------ -----------------------------TGGCCTGAAGTAACCGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------------------------------------------- ------------------------------------------------------------ CTTTGTAATCTCCCCCGCCTTTAAGAAGGT------------------------------ ---------------------------------------------------------TCT TTGTAATTCTCCCCA-CCCTT---------GACAATGTGCTTTGTGAGATCCACCCTT-G CCCGCAAAGCATTGCTCTTAACTTCAC--------------------------------- -----------------------CGCCTATCCCAAAACCTATAAGAACTAATGATAAT-- -------C--C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGACACGCATGA--------- >LTR7B_chr12_2ltr_int_fr_299__chr12_1161483911615294__ TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTCAC---------------------------------------------TTGCATG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAG---TACAAATAGC-------------------------- ---------------------------------C----------TTAA----ATGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTTCCCCACT CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------------------------------------------- ------------------------------------------------------------ CTTTGTAATCTCCCCCACCCTTAAGAAGGTACTTTGTAA--T------------------ ---------------------------------------------------CTCCCTACT TTGTAATTCTCCCCA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCT-G CCCGCAAAACACTGCTCTTAACTTCAC--------------------------------- -----------------------CGCCTATCCCAAAACCTATAAGAACTAATGATAAT-- -------C--C---ACCACACTTTGCTGA--CTCTTTTGGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCACATG---------- >LTR7B_chr17_2ltr_int_fr_611__chr17_7525262175253051_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATGGCATCC CCTATGAC---------------------------------------------TTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGATGTAAAAATAGC-------------------------- ---------------------------------C----------TTAC----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCAGCATTGTGATTTGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------------------------------------------- ------------------------------------------------------------ CTTTGTAATCTCCCCCACCCTTAAGAAGGTTCTTCGT----------------------- ------------------------------------------------------------ ----AATTCTCCCCA-CCCTT---------GAGAATGTACTTTGTGAGATCCATCCCT-G CCCGCAAAACATTGCTCTTAACTTCAC--------------------------------- -----------------------CGCCTATCCCAAAACCTATAAGAACTAATGATAAT-- -------C--C---ACCACACTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCATCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGCGCATGA--------- >LTR7B_chr16_Sltr_fr_535__chr16_1898988918990353__ TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATTGCATCC CCTGTGAC---------------------------------------------TTGCACG TATATATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCATC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------------------------------------------- ------------------------------------------------------------ CTTTGTAATCTCCCCCACCCTTAAGAAGGTACTTTGTAA--T------------------ ---------------------------------------------------CTCCCCTCT TTGCAATTCTCCCCA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCT-G CCTGCAAAACATTGCTCTTAACTTCAC--------------------------------- -----------------------CGCCTATCCCAAAACCTATAAGAACTAATGATAAT-- -------C--C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGCGCATG---------- >LTR7B_chr16_Sltr_fr_538__chr16_2144023421440688_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATTGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACACAAGAAGTAAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTAACTCTT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------------------------------------------- ------------------------------------------------------------ CTTTGTAATCTCCCCCACCCTTAAGAAGGTACTTTGTAA--T------------------ ---------------------------------------------------CTCCCCTCT TTGTAATTCTCCCCA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCT-G CCTGCAAAACATGGCTCTT-----CAC--------------------------------- -----------------------CCCCTATCCCAAAACCTGTAAGAACTAATGATAAT-- -------C--C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATGA--------- >LTR7B_chr16_Sltr_fr_541__chr16_2249821522498669__ TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATTGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACACAAGAAGTAAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTAACTCTT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------------------------------------------- ------------------------------------------------------------ CTTTGTAATCTCCCCCACCCTTAAGAAGGTACTTTGTAA--T------------------ ---------------------------------------------------CTCCCCTCT TTGTAATTCTCCCCA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCT-G CCTGCAAAACATGGCTCTT-----CAC--------------------------------- -----------------------CCCCTATCCCAAAACCTGTAAGAACTAATGATAAT-- -------C--C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATG---------- >LTR7B_chr16_Sltr_fr_548__chr16_2941889529419348_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATTGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACACAAGAAGTAAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTAACTCTT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------------------------------------------- ------------------------------------------------------------ CTTTGTAATCTCCCCCACCCTTAAGAAGGTACTTTGTAA--T------------------ ---------------------------------------------------CTCCCCTCT TTGTAATTCTCCCCA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCT-G CCTGCAA-ACATGGCTCTT-----CAC--------------------------------- -----------------------CCCCTATCCCAAAACCTGTAAGAACTAATGATAAT-- -------C--C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTA--TTT--GGTGGTCT CTTCACACGGACGCGCATGA--------- >LTR7B_chr16_Sltr_fr_540__chr16_2187250221872956_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATTGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACACAAGAAGTAAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTAACTCTT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------------------------------------------- ------------------------------------------------------------ CTTTGTAATCTCCCCCACCCTTAAGAAGGTACTTTGTAA--T------------------ ---------------------------------------------------CTCCCCTCT TTGTAATTCTCCCCA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCT-G CCTGCAAAACATGGCTCTT-----CAC--------------------------------- -----------------------CCCCTATCCCAAAACCTGTAAGAACTAATGATAAT-- -------C--C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATGA--------- >LTR7B_chr16_Sltr_fr_550__chr16_2952069129521144_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATTGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACACAAGAAGTAAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTAACTGTT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------------------------------------------- ------------------------------------------------------------ CTTTGTAATCTCCCCCACCCTTAAGAAGGTACTTTGTAA--T------------------ ---------------------------------------------------CTCCCCTCT TTGTAATTCTCCCCA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCT-G CCTGCAA-ACATGGCTCTT-----CAC--------------------------------- -----------------------CCCCTATCCCAAAACCTGTAAGAACTAATGATAAT-- -------C--C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--AGTGGTCT CTTCACACGGACGCGCATGA--------- >LTR7B_chr16_Sltr_fr_552__chr16_3026067330261126_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATTGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACACAAGAAGTAAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTAACTGTT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------------------------------------------- ------------------------------------------------------------ CTTTGTAATCTCCCCCACCCTTAAGAAGGTACTTTGTAA--T------------------ ---------------------------------------------------CTCCCCTCT TTGTAATTCTCCCCA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCT-G CCTGCAA-ACATGGCTCTT-----CAC--------------------------------- -----------------------CCCCTATCCCAAAACCTGTAAGAACTAATGATAAT-- -------C--C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATGA--------- >LTR7B_chr16_Sltr_fr_543__chr16_2254367922544133__ TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCACTGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACACAAGAAGTAAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTAGTTTCTGCCCCACC CTAACTCTT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------------------------------------------- ------------------------------------------------------------ CTTTGTAATCTCCCCCACCCTTAAGAAGGTACTTTGTAA--T------------------ ---------------------------------------------------CTCCCCTCT TTGTAATTCTCCCCA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCT-G CCCGCAAAACATGGCTCTT-----CAC--------------------------------- -----------------------CCCCTATCCCAAAACCTGTAAGAACTAATGATAAT-- -------C--C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACCGACGCGCATG---------- >LTR7B_chr16_Sltr_fr_574__chr16_7021296070213414_+_ -GTCTGGCATCTGAGCCCAAG-----------------------CCAAGCCATTGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACACAAGAAGTAAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTAACTGTT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------ATA--------------------------------------------- ------------------------------------------------------------ CTTTGTAATCTCCCCCACCCTTAAGAAGGTACTTTGTAA--T------------------ ---------------------------------------------------CTCCCCCCT TTGTAATTCTCCCCA-CCCTT---------CAGAATGTACTTTGTGAGATCTACCCCT-G CCCACAAAACATGGCTCTT-----CAC--------------------------------- -----------------------CCCCTATCCCAAAACCTGTAAGAACTAATGATAAT-- -------C--C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TGAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGTGCATGA--------- >LTR7B_chr7_Sltr_fr_1559__chr7_5057882750579286_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGACA------------ ------------------------------------------------------------ ----------ATCCACAAAAGCAGTAAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCACTGTGATTTGTTTCTGCCCCATC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------------------------------------------- ------------------------------------------------------------ CTTTGTAATCTCCCCCACCCTTAAGAAGGTACTTTGTAA--T------------------ ---------------------------------------------------CTCCCCTCC TTGTAATTCTCCCCG-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCT-G CCCACAAAACATTGCTCTTAACTTCAC--------------------------------- -----------------------CGCCTATACCAAAACCTATAAGAACTAATGATAAT-- -------C--C---ACCACCCTTTGCTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC AGGTGA-----AG--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGCGCATGA--------- >LTR7B_chr19_2ltr_int_fr_693__chr19_4705498147055408__ TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCA CCTGAGAC---------------------------------------------TTGCAGG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTCTTCCTGCCCCAC- CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------------------------------------------- ------------------------------------------------------------ CTTTGTAATCTCCCCCACCCTTA------------------------------------- ---------------------------------------------------------TCT TTGTAATTCTCCCCA-CCCTT---------GAGAATGTACTGTGTGAGATCCACCCCT-G CCCGCAAAACATTGTTCTTAACTTCAC--------------------------------- -----------------------CGCCTATCCCAAAACCTCTCAGAACTAATGATAAT-- -------C--C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCTGCCTGCAGCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATG---------- >LTR7B_chr17_Sltr_fr_604__chr17_6732833867328797_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATTGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCTCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------------------------------------------- ------------------------------------------------------------ CTTTGTAATCTCCCCCACCCTTAATAACGTACTTTCTAA--T------------------ ---------------------------------------------------CTCCCCTCT TTGTAATTCTCCCCA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCT-G CCCACAAAACATTGCTCTTAACTTCAC--------------------------------- -----------------------TGCCTATCCCAAAACCTGTAAGAACTAATGATAAT-- -------C--C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCAGCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTAGTCT CTTCACATGGATGCGCATGA--------- >LTR7B_chr16_2ltr_int_fr_586__chr16_88379728838400__ TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTATGAC---------------------------------------------TTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAAATGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAATAGC-------------------------- ---------------------------------C----------TTAG----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CGAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------------------------------------------- ------------------------------------------------------------ CTTTGTAATCTCCCCCACCCTTAAGAAGGTTCTTTGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CTCTT---------GAGAATGTACTTTGTGAGATCCACTCCT-G CCCACAAAACATTGCTCTTAACTTCAC--------------------------------- -----------------------CGCCTATCCCAAAACCCATAAGAACTAATGATAAT-- -------C--C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATG---------- >LTR7B_chr1_Sltr_fr_20__chr1_150580686150581114__ TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CGAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------------------------------------------- ------------------------------------------------------------ CTTTGTAATCTCCCCCACCCTTAAGAAGGTTCTTTGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCT-G CCCACAAAACATTGCTCTCAACTTCAC--------------------------------- -----------------------CACCTATCCCAAAACCTGTAAGAACTAATGATAAT-- -------C--C---ATCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTGT CTTCACACAGACGCGCATG---------- >LTR7B_chr4_Sltr_fr_1196__chr4_167929306167929734__ TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTATGAC---------------------------------------------TTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACT GGAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------------------------------------------- ------------------------------------------------------------ CTTTGTAATCTCCCCCACCCTTAAGAAGCTTCTTTGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCT-G CCCGCAAAACATTGCTCTTAACTTCAC--------------------------------- -----------------------CGCCTATCCCAAAACCTGTAAGAACTAATGAAAAT-- -------C--C---ACTACCCTTTGCTGACTCTCTTTTCGGACTCAGCCAACCTGCACCC AGGTGA-----AA--TAAACAGCCACGTTGCTCCCACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGATGCGCATG---------- >LTR7B_chr1_Sltr_fr_122__chr1_5774313257743560_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTATGAC---------------------------------------------TTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATCGTGATTTGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------------------------------------------- ------------------------------------------------------------ CTTTGTAATCTCCCCCACCCTTAAGAAGGTTCTTTGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCT-G CCTGCAAAACATTGCTCTTAACTTCAC--------------------------------- -----------------------CACCTATCCCCAAACCTATAAGAACTAATGATAAT-- -------C--C---ATCACCCTTTGCTGACTCTCTTTTCGGACTCAGCTCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACAGAAAGCCTG--TTT--GGTGGTCT CTCCACACGGATGCGCGTGA--------- >LTR7B_chr3_2ltr_int_fr_1017__chr3_148151529148151957_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC CCTATGAC---------------------------------------------TTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CAAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------------------------------------------- ------------------------------------------------------------ CTTTGTAATCTCCCCCACCCTTAAGAAGGTTCTCTGTAA--T------------------ ---------------------------------------------------TCTCTC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCT-G CCCGCAAAACATTGCTCCTAACTCCAC--------------------------------- -----------------------CACCTATCCCAAAACCTATAAGAACTAATGACAAT-- -------C--C---ACCACCTTTTGCTGACTTTCTTTTCCGACTAAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGCTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGCGCATGA--------- >LTR7B_chr1_2ltr_int_fr_82__chr1_236937494236937922__ TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC CCTATGAC---------------------------------------------TTGCATG TATACATCCAGA------------------------------------------------ -----------------------------TGTCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCTACAAAAGAAGTAAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCTCCACC CGAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------------------------------------------- ------------------------------------------------------------ CTTTGTAATCTCCCCCACCCTTAAGAAGGTTCTTTGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGCGAGATCCACCCCT-G CCCGCAAAACATTGCTCTTAACTTCAC--------------------------------- -----------------------TGCCTATCCCAAAACCTATAAGAACTAATGATAAT-- -------C--C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGTCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATG---------- >LTR7B_chr12_2ltr_int_fr_335__chr12_1702693517027363__ TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCATG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------------------------------------------- ------------------------------------------------------------ CTTTGTAATCTCCCCCATCCTTAAGAAGGTACTTTGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCT-G CCCGCAAAACATTGCTCTTAACTTCAC--------------------------------- -----------------------CACCTATCCCAAAACCTATAAGAACTAATGATAAT-- -------C--C---ACTACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCCGCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTAACACGGACGCGCATG---------- >LTR7B_chr14_2ltr_int_fr_474__chr14_7370333973703768_+_ -GTCAGACCTCTGAGCCCAAG-----------------------CTAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------------------------------------------- ------------------------------------------------------------ CTTTGTAATCTCCCCCACCCTTAAGAAGGTTCTTTTTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGCTCCACCCCT-G TCTGCAAAACATTGCTCTTAACTTCAG--------------------------------- -----------------------CGCCTATCCCAAAACCTATAAGAACTGATGATAAT-- -------C--C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTACTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGTGCATGA--------- >LTR7B_chr2_Sltr_fr_836__chr2_222847921222848380__ TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACA TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAATAGC-------------------------- ---------------------------------C----------TTAC----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACAATTGTGATTTGTTCCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------------------------------------------- ------------------------------------------------------------ CTCTGTAAACTCCCCCACCCTTAAGAAGGTACTTTGTAA--T------------------ ---------------------------------------------------CTCCTT--- -------------CA-CCCTT---------AAGAATGTACTTTGTGAGATCCAGCCCT-G CCCGCAAAACATTGCTCTTAACTTCAC--------------------------------- -----------------------CGCCTATCCCAAAACCTGTAAGAACTGATGATAAT-- -------C--C---ACCAGCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTG--GGTGGTCT TTTCACACGGACGCGCATG---------- >LTR7B_chr8_2ltr_int_fr_1587__chr8_104285912104286339_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAATAGC-------------------------- ---------------------------------C----------TTAA----CAGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------------------------------------------- ------------------------------------------------------------ CTTTGTAATCTCCCCCACCCTTAAGAAGGTTCTTTGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GACAATGTACTTTGTGAGATCCACC-CT-G CCCACAAAACATTGCTCTTAACTTCAC--------------------------------- -----------------------TGCCTATCCCAAAACCTATAAGAACTAATGATAAT-- -------C--C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGTTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGATGCACATGA--------- >LTR7B_chr12_Sltr_fr_371__chr12_70205957021052__ TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACA TATACAACCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTGCCCTACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------------------------------------------- ------------------------------------------------------------ CTTTGTAATCTCCCCCACCCTTAAGAAGGTACTTTGTAA--T------------------ ---------------------------------------------------C-CCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCT-G CCCACAAAACATTGCTCTTAACTTCAC--------------------------------- -----------------------CGCCTATCCCAAAACCTATAAGAACTAATGATAAT-- -------C--C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGG-GA-----AA--TAAACAGCCTTGTTGCTCACACAGAGCCTG--TCT--GGTGGTCT CTTCACACGGACGCACATG---------- >LTR7B_chr2_Sltr_fr_826__chr2_208190520208190979__ TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC CCTGTGAC---------------------------------------------TTGCACA TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTAAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAATAGT-------------------------- ---------------------------------C----------TTAA----GTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTTCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTG--------------------------------------------- ------------------------------------------------------------ CTTTGTAATCTCCCCC-CGCTTAAGCAGGTACTTTGTAA--T------------------ ---------------------------------------------------CTCCCC--- -------------CA-CCCTT---------GAGCATGTAGTTTGTGAGATCCACCCCT-G CCCACAAAACATTGCTCCTAACTCCAC--------------------------------- -----------------------CGCCTATCCCAAAACCTATAAGAACTAATGATAAT-- -------C--C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGTTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGACGCACATG---------- >LTR7B_chr21_Sltr_fr_949__chr21_3004070030041128_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC CCTGTGAC---------------------------------------------TTGCACA TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC AAT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------------------------------------------- ------------------------------------------------------------ CTTTGTAATCTCCCCCACCCTTAAGAAGGTTCTTTGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCT-G CCCGTAAAACATTGCTCTTAACTTCAC--------------------------------- -----------------------CATCTATCTCAAAACCTATAAGAACTAATGATAAT-- -------C--C---ACCACCCTTTACTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCACATGA--------- >LTR7B_chr20_Sltr_fr_931__chr20_46597764660204_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------------------------------------------- ------------------------------------------------------------ CTTTGTAATCTCCCCCACCCTTAAGAAGGTTCTTTGTAG--T------------------ ---------------------------------------------------TCTCCT--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCT-G CCGGCAAAACGTTGCTCTTAACTTCAC--------------------------------- -----------------------CGCCTATCCCAAAACCTATAAGAACTAATGACAAT-- -------C--C---ACCACCCTTCGCTGACTCTTTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGCGGTCT CTTCACACGGACGCACATGA--------- >LTR7B_chr14_2ltr_int_fr_458__chr14_4654400646544465_+_ -GTCAGGTCTCTGATCCCAAG-----------------------CCAAGCCATCACATCC CCTGTGAC---------------------------------------------TTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAATAAC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ACT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTCACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------------------------------------------- ------------------------------------------------------------ CTTTGTAATCTCTGCCACCCTTAAGAAGCTTCTTTATAA--T------------------ ---------------------------------------------------TTTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCT-G CCTGCAAAACATTGCTCTTAACTTCAC--------------------------------- -----------------------CACCTATCCCAAAACCTCTAAGAACTAATGATAAT-- -------C--C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTTACACGGACACGCATGA--------- >LTR7B_chr13_Sltr_fr_401__chr13_3060090730601365_+_ -GTCAGGCCTCTGATCCCAAG-----------------------CCAAGCCATCACTTCC CCTGTGAC---------------------------------------------TTGCATG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAATAAC-------------------------- ---------------------------------C----------TTAA----CTAATGAC ATT--------------------------------------------------------- -------------------------------CTACCACTGTGATTTGTTTCTGCCCCACC CTCACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------------------------------------------- ------------------------------------------------------------ CTTTGTAATCTCCGCCACCCTTAAGAAGGTTCTTTATAA--T------------------ ---------------------------------------------------TTCCCC--- -------------CA-CCCTT---------GAGAATGTAATTTGTGAGATCCACCGCT-G CCCGCAAAACATTGCTCTTAACTTCAC--------------------------------- -----------------------CACCTATCCCAAAACCTATAAGAAGTAATGATAAT-- -------C--C---ACCACCCTTTGCTGACTCTCTTTTCTGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAATAGCCATGTTGCTCACACAAAGCCTG--TTT--GGT-GTCT CTTCACATGGACACGCATGA--------- >LTR7B_chr2_Sltr_fr_771__chr2_1316926413169724__ TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC CCTGTGAC---------------------------------------------TTGCATG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAATAAC-------------------------- ---------------------------------C----------TTAA----CCGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTCACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------------------------------------------- ------------------------------------------------------------ CTTTGTAATCTCCACCACCCTTAAGGAGGTTCTTTATAA--T------------------ ---------------------------------------------------TTCCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACC----- CCTGCAAAACATTGCTCTTAACTTCAC--------------------------------- -----------------------CGCCTATCCCAAAACCTATAACAACTAATGATAAT-- -------C--C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTTCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACACGCATG---------- >LTR7B_chr20_Sltr_fr_922__chr20_2523151325231972_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTCACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------------------------------------------- ------------------------------------------------------------ CTTTGTAATCTCCACCACCCTTAAGAAGATTCTTTATAA--T------------------ ---------------------------------------------------TTCCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCA-G CCCGCAAAACATTGCTCTTAACTTCAC--------------------------------- -----------------------CGCCTATCCCAAAACCTATAAGAACTAATGATAAT-- -------C--C---ACCACCCTTTGCTGACTCTCTTTTCGGGCTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGATCT CTTCACAGGGACGCGCATGA--------- >LTR7B_chr5_Sltr_fr_1352__chr5_3471112834711588__ TGTCAGGCCTCTGAGCCCAGG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACA TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAATAAC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTCACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------------------------------------------- ------------------------------------------------------------ CTTTGTAATCTCTGCCACCCTTAAGAATGTTCTTTATAA--T------------------ ---------------------------------------------------TTCCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCT-G CCGGCAAAACATTGCTCTTAACTTCAC--------------------------------- -----------------------TGCCTATCCCAAAACCTATAAGAACTAATGAAAAT-- -------C--C---ACCACCCTTTGCTGAGTCTCTTTTCGGACTCAACCCGCCTGCACCC AGGTGA-----AA--TAAATAGCCATGTTGCTCACATAAAGCCTG--TTT--GGTTGTCT CTTCACACGGACGCGCATG---------- >LTR7B_chr2_Sltr_fr_815__chr2_194502313194502772_+_ -GTCAGGCCTCCGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACT TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAATAAC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTCACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------------------------------------------- ------------------------------------------------------------ CTTTGCAATCTCCGCCACCCTTAAGATGGTTCTTTATAA--T------------------ ---------------------------------------------------TTCCCC--- -------------AA-CCCTT---------GAGGATGTACTTTGTGAGATCCATCCCT-G CCCGCAAAACATTGCTCTTAACTTCAC--------------------------------- -----------------------CACCTATCCCAAAACCTATAAGAACTAATGATAAT-- -------C--C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGTCTG--TTT--GGTGGTCT CTTCACGTGGACGCGCATGA--------- >LTR7B_chr8_Sltr_fr_1626__chr8_4980184949802308_+_ -GTCAGGCCTCTGAGCGCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATGCATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAACAAGTAAAAATAAC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTTTGATTTGTTTCTGCCCCACC CTCACTGAA-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------------------------------------------- ------------------------------------------------------------ CTTTGTAATCTCTGCCACCTTTAAGAAGTTTCTTTATAA--A------------------ ---------------------------------------------------TTCCCC--- -------------CA-CCCTT---------GAGAATATACTTTGTGAGATCCACCCCT-G CCTGTAAAACATTGCTCTTAACTTCAC--------------------------------- -----------------------CACCTATCCCAAAACCTATAAGAACTAATGATAAT-- -------C--C---ACCACACTTTGCTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT TTTCACATGGACGCACATGA--------- >LTR7B_chr1_Sltr_fr_121__chr1_5752439757524855__ TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCGTGGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAATAAC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------------------------------------------- ------------------------------------------------------------ CTTTGTAATCTCCGCCACCCTTAAGAAGGTTCTTTATAA--T------------------ ---------------------------------------------------TTCCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCAACCCT-G CCCACAAAACATTGCTCTTAACTTCAT--------------------------------- -----------------------CGCCTATCCCAAAACCTGTAAGAACTAATGATAAT-- -------C--C---ACCACACTTTGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACATCTATG-TGCTCACACAAAGCCTG--TTT--GGTGGTCT CTCCACATGGACGTGCATG---------- >LTR7B_chr2_Sltr_fr_905__chr2_8652084386521292_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCTTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------AACCACAAAAGAAGTAAAAA------------------------------ -----------------------------------------------------TGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTCACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------------------------------------------- ------------------------------------------------------------ CTTTGTAATCTCCGCCACCCTTAAGAAGGTTCTTTATAA--T------------------ ---------------------------------------------------TTCCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCT-G TCCGCAAAACATTGCTCTTAACTTCAC--------------------------------- -----------------------CGCCTATCCCCAAACCTATAAGAACTAATGATAAT-- -------C--C---ACCACCCTTTGCTGACTCTCTTTTTGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCTTTATTGCTCATACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGCGCATGA--------- >LTR7B_chr2_2ltr_int_fr_835__chr2_218179458218179886__ TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAATACC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTGTCTGCCTCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------------------------------------------- ------------------------------------------------------------ CTTTGTAATCTCCCGTACCCTTAAGAAGGTTCTTTGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTATGAGATCCACCCCT-G CCCACAAAACATTGCTCTTAACTTCAC--------------------------------- -----------------------CGCCTATCCCAAAACCTATAAGAACTAATGATAAT-- -------C--C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACCAGCACCC AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGCACATG---------- >LTR7B_chr20_2ltr_int_fr_919__chr20_1975634819756776__ TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGTCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAACATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCCGCCCCACC CTAACTAAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------------------------------------------- ------------------------------------------------------------ CTTTGTAATCTCCCCCACCCTTAAGAAGGTTCTTTGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCT-G CCCACAAAACATTGCTCTTAACTTCAC--------------------------------- -----------------------CGCCTATCTCAAAACCTATAAGAACTAATAATAAT-- -------C--C---ACCACTCTTTGCTGACTCTCTGTTTGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATG---------- >LTR7B_chr8_Sltr_fr_1614__chr8_133607498133607927_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC CCTGTGAC---------------------------------------------TTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC CTAACTAAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------------------------------------------- ------------------------------------------------------------ CTTTGTAACCTCCCCCACCCTTAAGAAGGTTCTTTGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCT-G CCGGCAAAACATTGCTCTTAACTTCAC--------------------------------- -----------------------CGCCTATCCCAAACCCTATAAGAACTAATAATAAT-- -------C--C---ACCACTCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGCGTATGA--------- >LTR7B_chr4_2ltr_int_fr_1186__chr4_163093170163093602_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACA TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTGCCCCACT CTAACTAAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------------------------------------------- ------------------------------------------------------------ CTTTGTAATCTCCCCCACCGTTAAGAAGGTTCTTTGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCT-G CCCGCAAAACATTGCTCTTAACTTCAT--------------------------------- -----------------------CGCCTATCCCAAAACCTATAAGAACTAATAATAAT-- -------C--C---ACCACTCTTTGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCTTTATTGTTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACACGCATGA--------- >LTR7B_chr16_Sltr_fr_566__chr16_6197078661971275_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTATGAC---------------------------------------------TTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTAAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAACAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTTCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------------------------------------------- ------------------------------------------------------------ CTTTGTAATCTCCCCCACCCTTAAGAAGGTACTTTGTAA--T------------------ ---------------------------------------------------CTCCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACC-CT-G CCCGCAAAACATTGCTCTTAACTTCAC--------------------------------- -----------------------CGCCTATCCCAAAACTTATAAGAACTGATAATAAT-- -------C--C---ACCACCCTTTGCTGACTCTCTTTTTGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTGT CTTCACACGGACGTGCATGA--------- >LTR7B_chr17_Sltr_fr_619__chr17_83527728353232__ TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCATG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAATAGC-------------------------- ---------------------------------T----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------------------------------------------- ------------------------------------------------------------ CTTTGTAATCTCCCCCACCCTTAAGAAGGTACTTTGTAA--T------------------ ---------------------------------------------------CTCCCC--- -------------CA-CCCTT---------GAGAATGTACTCTGTGAGATCCACCCCT-G CCCGCAAAACATTGCTCTTAACTTCAC--------------------------------- -----------------------TGCCTATCCCAAAACCTATAAGAACTAATGATAAT-- -------C--C---ACCACCCTTTGCTGACTCT--TTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTA--TTT--GGTGGTCT CTTCACACGGACGCGCATG---------- >LTR7B_chr4_Sltr_fr_1142__chr4_1137507711375536_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTCAC---------------------------------------------TTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGTCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCGTTGTGATTTGTTCCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------------------------------------------- ------------------------------------------------------------ TTTTGTAATCTCCCCCACCCTTAAGAAGGTACTTTGTAA--T------------------ ---------------------------------------------------CTCCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCT-G CCCGCAAAACATTGCTCTTAACTTCAC--------------------------------- -----------------------CGCCTATCCCAAAACCTATAAGAACTAATGATAAT-- -------C--C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACCCGCACCC AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGAAGCGCATGA--------- >LTR7B_chr18_Sltr_fr_626__chr18_3195474731955206_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG AATGCATCCAGA------------------------------------------------ -----------------------------TGGCTTCAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCTACAAAAGAAGTAAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------------------------------------------- ------------------------------------------------------------ TTTTCTAATCTCCCCCACCCTTAAGAAAGTACTTTCTAA--T------------------ ---------------------------------------------------CTCCCC--- -------------CA-CCCTT---------GAGAATGTACGTTGTGAGATCCACCCCT-G CCCGCAAAGCATTGCTCTTAACTTCAC--------------------------------- -----------------------CGCCTATCCCAAAACCTGTAAGAACCAATGATAAT-- -------C--C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGTGAGTGA--------- >LTR7B_chr19_2ltr_int_fr_683__chr19_3626479336265220__ TGTCAGGCCTCTGAGCCCAAG-----------------------CCAATCCATCGCATCC CCTGTGAC---------------------------------------------TTGAACA TATACA-CCAGA------------------------------------------------ -----------------------------TGGTCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGACATCAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CTACCATTGTGATTTGTTCCTTCCCCACC CTATCTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------------------------------------------- ------------------------------------------------------------ CTTTGTAATCTCCCCCACCCTTAAGATGTTTCTTTGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCGACCCCT-G TCCGCAAAACATTGCTATCAACTTCAC--------------------------------- -----------------------CACCTATCCCAAAACCTATAAGAACTAATGGTAAT-- -------C--C---ATCTCCCTTTGCTGACTCTCTTTTCAGACTCAGCCCACCTGCACCC AGTTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGGGCATG---------- >LTR7B_chr21_Sltr_fr_944__chr21_2059293020593358__ TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATTGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTAAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAACAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTACCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------------------------------------------- ------------------------------------------------------------ CTTTGTAATCTCCCCCACCCTTAAGAAGTTTCTTTGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCC-T-G ACCGCAAAACATTGCTCTTAACTTCAC--------------------------------- -----------------------CACCTAACCCAAAACCTATAAGAACTAATGGTAAT-- -------C--C---ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC CAGTGA-----AA--TAAACAGCCAAGTTTCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACACGCATG---------- >LTR7B_chr2_2ltr_int_fr_860__chr2_3659910036599525_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC C--GTGAC---------------------------------------------TTGCACA TATACACCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAATAGC-------------------------- ---------------------------------C----------TTAA-----GGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------------------------------------------- ------------------------------------------------------------ CTTTGTAATCTCCCCCACCCTTAAGAAGTTTCTTTGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCT-G CCCGCAAAACATTGCTCTTAACTTCAC--------------------------------- -----------------------CGCCTGACCCAAAACCTGTAAGAACTAATGATAAT-- -------C--C---ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCATCC AGGTGA-----AA--TAAACAGCCGTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCACATGA--------- >LTR7B_chr1_Sltr_fr_21__chr1_150640169150640581_+_ -GTCAGGCCTCTGAGCCCAAA-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACACCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATT--GATTTGTTCCTGTCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------------------------------------------- ------------------------------------------------------------ CTTTGTAATCTCCCCCACCCTTAAGAAAGTTCTTTGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCT-G CCCGCAAAACATTGCTCTCAACTTCAC--------------------------------- -----------------------CGCCTATCCCAAAACCTATAAGAATTAATGATAAT-- -------C--C---ATCTCCCTTCGCTGACTCTCTTTTCG--------------GCACCC AGGTGA-----AA--TAAATACCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGCCT CTTCACACGGACGCACATGA--------- >LTR7B_chr2_2ltr_int_fr_787__chr2_164295826164296258_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATTGCATCC CCTCTGAC---------------------------------------------TTGCACG TATACACCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCGCAAAAGAAGTAAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGCTCCTGCCCCACC CTAACTGAT-------CAAC---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------------------------------------------- ------------------------------------------------------------ CTTTGTAATCTCCCCCACCATTAAGAAGGTTCTTTGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCATGCCT-G CCCACAAAACATTGCTCTTAACTTCAC--------------------------------- -----------------------CGCCTAACCCAAAACCTATAAGAACTAATGATAAT-- -------C--C---ATCTCCCTTCGCTGATTCTCTTTTTGGACGCAGCCTGCCTGCACCC AGGTGC-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGCACATGA--------- >LTR7B_chr2_2ltr_int_fr_896__chr2_7796514077965568_+_ -GTCAGGCCTCTGAGACCAAG-----------------------CCAAGCCATCACATCC CCTGTGAC---------------------------------------------TTGCACA TATACATCCAGA------------------------------------------------ -----------------------------TGGTCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAGAAGATGTAAAAATATC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------------------------------------------- ------------------------------------------------------------ CTTTGTAATCTCCCCTACCCTTAAGAAGGTTCTTTGTAA--T------------------ ---------------------------------------------------TCTCTC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCT-G CCCACAAAACATTGCTCTTAACTTCAC--------------------------------- -----------------------CGCCTATCCCAAAACCTGTAAGAACTAATGATAAT-- -------C--C---ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCTTTACTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGCACATGA--------- >LTR7B_chr5_Sltr_fr_1287__chr5_116947064116947489_+_ -GTCAGGCCTCCGAGCCCAAG-----------------------CCAAGCCATCTCATCC CCTGTGAC---------------------------------------------TTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAATAGC-------------------------- ---------------------------------C----------TGAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------------------------------------------- ------------------------------------------------------------ GTTTGTAATCTTCCC-ACCCTTAAGAAGGTTCTTTGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCT-G CCCACAAAACATTGCTCTTAACTTCAC--------------------------------- -----------------------CGCCCATCCCAAAACCTGTAAGAACTAATGATAAT-- -------C--C---ATCTCCCTTCGCTGACTC--TTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCATGCTGCTCACACAAAACCTG--TTT--GGTGGTCT CTTCACACGGACACACATGA--------- >LTR7B_chr2_Sltr_fr_765__chr2_124387363124387821__ TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------------------------------------------- ------------------------------------------------------------ CTTTGTAATCTCCCCCACCCTTAAGAAGGTACTTTGTAA--T------------------ ---------------------------------------------------CTCCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACC-CT-G CCCGCAAAACATTGCTCTTAACTTCAC--------------------------------- -----------------------CGCCTAACCCAAAACCTATAAGAACTAATGATAAT-- -------C--C---ATCTCCCTTCGCTGACTCTCTTTTCGGATTCAGCCCACCTACACCC AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTAGTCT CTTCACATGGACGCGCATG---------- >LTR7B_chr5_Sltr_fr_1286__chr5_116761470116761929_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CTTGTGAC---------------------------------------------TTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTAAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAACAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATC--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTGCCCTACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------------------------------------------- ------------------------------------------------------------ CTTTGTAATCTCCCCCACCCTTAAGAAGGTACTTTGTAA--T------------------ ---------------------------------------------------CTCCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACC-CT-G TCCACAAAACATTGCTCTTAACTTCAC--------------------------------- -----------------------CGCCCATCCCAAAACCTGTAAGAACTAATGATAAT-- -------C--C---ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CCTCACATGGACGCGCATGA--------- >LTR7B_chr3_Sltr_fr_977__chr3_108377864108378321_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAG-CATCGCATCC CCTGTGAT---------------------------------------------TTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTAAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------------------------------------------- ------------------------------------------------------------ CTTTGTAATCTCCCCCACCCTTAAGAAGGTACTTTGTAA--T------------------ ---------------------------------------------------CTTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACC-CT-G CCCACAAAACATTGCTCTTAACTTCAC--------------------------------- -----------------------CGCCTAACCCAAAACCTATAAGAACTAATGATAAT-- -------C--C---ATCACCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGATGCACATGA--------- >LTR7B_chrX_Sltr_fr_1828__chrX_7273065772731115_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTAAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAACAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------------------------------------------- ------------------------------------------------------------ CCTCGTAATCTCCCCCACCCTTAAGAAGGTGCTTTGTAA--T------------------ ---------------------------------------------------CTCCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTCAGATCCACC-CT-G CCCGCAAAACATTGCTCTTAACTTCAC--------------------------------- -----------------------CACCTAACCCAAAACCTGTAAGAACTAATGATAAT-- -------C--C---ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGACGCGCATGA--------- >LTR7B_chr12_Sltr_fr_354__chr12_4603590746036335__ TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC CCTGTGAC---------------------------------------------TTGCACG TATACACCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTGCCCCACT CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------------------------------------------- ------------------------------------------------------------ CTTTGTAATCTCCCCCACCCTTAAGAAGGTTTGTTGCAA--T------------------ ---------------------------------------------------TCTCTC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCT-G CCCACAAAACATTGCTCTTAACTTCAC--------------------------------- -----------------------CGCCTATCCCAAAATCTATAAGAACTAATGATAAT-- -------C--C---ATCTCCCTTCGCTGACTCTCTTTTTGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACAAGGACGCGCATG---------- >LTR7B_chr20_Sltr_fr_920__chr20_2106036521060793__ TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC CCTGTGAC---------------------------------------------TTGCATG TATACACCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGATG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------------------------------------------- ------------------------------------------------------------ CTTTGTAATCTCCCCCACCCTTAAGAAGGTTCTCTGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAATGCACTTTGTGAGATCCACCCCT-G CCCACAAAACATTGCTCTTAACTTCAC--------------------------------- -----------------------TGCCTAACCCAAAACCTATAAGAACTAATGATAAT-- -------C--C---ATCTCCCTTCGCTGACTCTCTTTTCGAACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACACGCATG---------- >LTR7B_chr3_2ltr_int_fr_996__chr3_128834514128834942__ TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------ATGCGCG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGGAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACTATTGTGATTTGTTCCTGCCCCACC ATAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------------------------------------------- ------------------------------------------------------------ CTTTGTAATCTCCCCCACCCTTAAGAAGGTTCTTTGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCT-G CCCACAAAACATTGCTCTTAACTTCAC--------------------------------- -----------------------CGCCTATCCCAAAACCTGTAAGAACTAATGATAAT-- -------C--C---ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGTGCATG---------- >LTR7B_chr7_Sltr_fr_1555__chr7_3465482534655262_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------AATCACAAGAGAAGTGAAAAGGGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC CTAACTGAT-------CAAG---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------------------------------------------- ------------------------------------------------------------ CTTTGTAATCTCCCCCACCCTTAAGAAGGTTCTTTGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCT-G CCCGCAAAACATTGCTCTTAACTTCAC--------------------------------- -----------------------CGCCTATCCCAAAACGTATAAGAACTAATGATAAT-- -------C--C---ACCACCCTTTGCTGACTCTCTTTTCAGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGCTCT CTTCACACGGACGCGCATGA--------- >LTR7B_chr13_2ltr_int_fr_433__chr13_8391341383913838__ TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC CCTGTGAC---------------------------------------------TTGCAGG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAA---GTAAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC CTAACTGAA-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------------------------------------------- ------------------------------------------------------------ CTTTGTAATCTACCCCACCCTTAAGAAAGTTCTTTGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CTGTT---------GAGAATGTACTTTGTGGGATCCACCCCT-G CCCACAAAACATTGCTCTTAACTTCAC--------------------------------- -----------------------TGCCTATCCCAAAACCTATAAGAACTAATGATAAT-- -------C--C---ACCACCCTTTGCTGACTCTCTTTTTGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCATGGTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCACATG---------- >LTR7B_chr1_Sltr_fr_43__chr1_1995900419959432__ TGCCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TGTACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATACACCAAAGAAGAAAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------------------------------------------- ------------------------------------------------------------ CTTTGTAATCTCCCCCACCCTTAAGAAGATTCTTTGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CTCTT---------GAGAATGTACTTTGTGAGATCCACCCCT-G CCCGCAAAACATTGCTCTTAACTTCAC--------------------------------- -----------------------TGCCTATCCCAAAGCCTATAAGAACTAATGATAAT-- -------C--C---ACCACCCTTTGCTGACTCTCTTTTCAGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATG---------- >LTR7B_chr10_Sltr_172__chr10_2345730923457737__ TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC CCTGTGAC---------------------------------------------TTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------------------------------------------- ------------------------------------------------------------ CTTTGTAATCTCCCCCACTCTTAAGAAGGTTCTTTGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CTCTT---------GAGAATGTACTTTGTAAGATCCACCCCT-A CCCGCAAAACATTGCTCTTAACTTCAC--------------------------------- -----------------------TGCCTATCCCAAAACCTACAAGAACTAATGATAAT-- -------C--C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGCACGTGCATG---------- >LTR7B_chr5_2ltr_int_fr_1362__chr5_702471702899_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC CCTGTGAC---------------------------------------------TTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------------------------------------------- ------------------------------------------------------------ CTTTGTAATCTCCCCCACCCTTAAGAAGGTTCTTTGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGAGCCACCCCT-G CCCACAAAACATTGCTCTTAACTTCAC--------------------------------- -----------------------TGCCTATCCCAAAACCTATAAGAACTAATGACAAT-- -------C--C---ACCACCCTTTGCTGACTCTCTTTTTGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TACACAGCTTTATTCCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATGA--------- >LTR7B_chr3_2ltr_int_fr_1034__chr3_166829299166829713__ TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATTGCATCC CCTGTGAC---------------------------------------------TTGCATG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAACAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATCTGTTCGTGCCCCACC CTAACTGAT-------CAA----------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ --------TCTCCCCCACCCTTAAGAAGGTACTCT--AA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCT-G CCCTCAAAACATTGCTCTTAACTTCAC--------------------------------- -----------------------CACCTATCCCAAAACCTATAAGAACTAATGATAAT-- -------C--C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGTTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTTACATGGACACACATG---------- >LTR7B_chr6_2ltr_int_fr_1476__chr6_7766600077666441__ TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTAAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAACAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACTATTGTGATTTGTTCCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------------------------------------------- ------------------------------------------------------------ CTTTGTAATCTCCCCCACCCTTAAGAAGGTTCTTTGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGACCCACCCCT-G CCCGCAAAACATTGCTCTTAACTTCAC--------------------------------- -----------------------CGCCTATCCCGAAACCTATAAGAACTAATGATAAT-- -------C--C---ACCACCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTTACATGGACACACATG---------- >LTR7B_chr1_Sltr_fr_84__chr1_237504169237504595__ TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCTTCGCATCC CCTGTGAC---------------------------------------------TTGCATG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CGAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------------------------------------------- ------------------------------------------------------------ CTTTGTAATCTCCCCCACCCTTAAGAAGGTTCTTTGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCT-G CCCGCAAAATATTGCTCTTAACTTCAC--------------------------------- -----------------------TGCCTATCCCAAAACCTATAAGAGCTAATGATAAT-- -------C--C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTG-------A--TTAAAAGC-TTATTGCTCACACAAAGCCTG--TTT--AGTAGTCT CTTCACACAGACGTGCATG---------- >LTR7B_chr13_Sltr_fr_440__chr13_9806185398062318__ TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCATG TACACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------A--CACAAAAGAAGTAAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------------------------------------------- ------------------------------------------------------------ CTTTGTAATCTCCCCCACCCTTAAGAAGGTTCTTTGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAATGTATTTTGTGAGATCCACCCCT-G CCTGCAAAACATTGGTCTTAACTTCAC--------------------------------- -----------------------CGCCTATCCCAAAACCTGTAAGAACTAATGATAAT-- -------C--C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTG-------A--TTAAAAGC-TTATTGCTCACACAAAGCCTG--TTT--GGTGGTCC CTTCACATGGATGCGCATG---------- >LTR7B_chr2_Sltr_fr_881__chr2_6407570464076162_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTAAGTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------------------------------------------- ------------------------------------------------------------ CGTTGTAATCTCCCCCACCCTTAAGAAGTTTCTTTGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACGCCT-G CCCGCAAAACATTGCTCTTAACTTCAC--------------------------------- -----------------------CGCCTATCCCAAAACCTATAAGAACTAATGATAAT-- -------C--C---ACCAACCTCTGCTAACTCTCTTTTCAGACTCAGCCCGCCTGCACGC AGGTG-------A--TTAAAAGC-TTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCGTGA--------- >LTR7B_chr8_Sltr_fr_1650__chr8_91850519185479_+_ -GTCAGGCCTCTGAGCACAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------G----------------------------------------------- ------------------------------------------------------------ ---------------CACCCTTAAGAAGGTTCTTTGTAA--T------------------ ---------------------------------------------------TCTCTC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCT-G CCTGCAAAACATTGCTCTTAACTTCAC--------------------------------- -----------------------CGCCTAGTCCAAAACCTATAAGAACTAATGATAAT-- -------C--C---ACCAGCCTTTGCTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC AAGTG-------A--TTAAAAGC-TTATTGCTCACACAAAGCCTG--TTT--GGTGGTTT CTTCACACGGACGCGCATGA--------- >LTR7B_chr4_Sltr_fr_1245__chr4_7645671176457137__ TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAT---------------------------------------------TTGCACG TATACACCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTACCTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------------------------------------------- ------------------------------------------------------------ CTTTGTAATCTCCGCCACCCTTAAGAAGGTTCTTTGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCT-G CCTGCAAAACACTGCTCTTAACTTCAC--------------------------------- -----------------------CGCCTATCCCAAAACCTATAAGAACTAATGATAAT-- -------C--C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTG-------A--TTAAAAGC-TTATTGCTCACCCAAAGCCTA--TTT--GGTGGTCT CTTTACACGGACGCGCATG---------- >LTR7B_chr19_Sltr_fr_684__chr19_369601369994__ TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCGTCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAT ATT--------------------------------------------------------- -------------------------------CCACTATTGTGATTTGTTTTTGCCCCACC CTAAGTGAT-------CAAG---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------------------------------------------- ------------------------------------------------------------ CTTTGTAATGTCCCCCACCCTTAAGAAGGTTCT--------------------------- ------------------------------------------------------------ -----------------------------------------TTGCGAGATCCACCCCT-G CCCGCAAAACATTGCTCTTAACTTCAC--------------------------------- -----------------------CACCTATCCCAAAACCTATAAGAACAATTGATAAT-- -------C--C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCAC-C AGGCG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--AG--GCTT CTTCACACGGATGTGCCTG---------- >LTR7B_chr11_Sltr_fr_269__chr11_8019828880198715__ TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCTATCCCATCC CCTGTGAC---------------------------------------------TTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTTTTCCTGCCCCATG CTAACTGAT-------CAGT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------------------------------------------- ------------------------------------------------------------ CTTCGTAATCTCCCCCACCCTTAAGAAGGTTCTTTGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAGTGTACTTTGTGAGATCCACCCCT-G CCCACAAAACATTGCTCTTAACTTCAC--------------------------------- -----------------------CGCCTATCCCAAAACCTATAAGAACTAATGATAAT-- -------C--C---ACCACCCTTTGCTGACTCTTTTTTCGGACTCAGCCTGCCTGCACCC AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACAGGGACGCGCATG---------- >LTR7B_chr16_Sltr_fr_563__chr16_6057739160577788_+_ -GTCAGGCCTCTGAGCCTAAG-----------------------CCAAGCCATCGCATCT TCTGTGAC---------------------------------------------TTGCACG TATGCATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGGAACTGAAG------------ ------------------------------------------------------------ ----------ATCTACAAAAGAAGTAAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATAGTGATTTGTTCCTGCACTACC TTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------------------------------------------- ------------------------------------------------------------ CTT-------------------------------TGTAA--T------------------ ---------------------------------------------------TCTCCG--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCT-G CCTGCAAAACATTGCTCTTAACTTCAC--------------------------------- -----------------------CGCCTATCTTAAAACTTGTAAGAACTAATGATAAT-- -------C--C---ACCACATTTTGCTGACTCTCTTTTCGGACTCAGCCTACCTGCACCC AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGACGCACATGA--------- >LTR7B_chr2_2ltr_int_fr_866__chr2_4503975945040152__ TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC CCTGTGAC---------------------------------------------TTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ACT--------------------------------------------------------- -------------------------------CCACCAATGTGATTTGTTCCTGCCCCACC CTAACTGAT-------TAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------------------------------------------- ------------------------------------------------------------ CTT-------------------------------TGTAA--T------------------ ---------------------------------------------------CTCCCC--- -------------CA-CCCTT---------GAGAATGTACT----GAGATCCACCCCT-G CCTGCACAACATTGCTCTTAACTTCAC--------------------------------- -----------------------CACCTATCCCAAAACCTATAAGAACTAATGATAAT-- -------C--C---ACCACCCTTTGCTAACTCTCTTTTCGGACTCGGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCTATGTTGCTCACACAAAGCCTG--TTT--GCTGGTCT CTTCACACGGACGCGCATG---------- >LTR7B_chr16_Sltr_fr_582__chr16_8438100584381395__ TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC CCTGTGAC---------------------------------------------TTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ACT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCGCACT CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------------------------------------------- ------------------------------------------------------------ CTT-------------------------------TGTAA--T------------------ ---------------------------------------------------CTCCCC--- -------------CA-CCCTT---------AAGAAGGTACTCTGAAAGATCCACCCCT-G CACGCAAAACGT-------AACTTCAC--------------------------------- -----------------------CGCCTATCCCCAAACCTATAATAACTAATGATAAT-- -------C--C---ACCACCCTTTGCCGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATG---------- >LTR7B_chr7_2ltr_int_fr_1549__chr7_2978499229785389_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATTGCATCC CCTGTGAC---------------------------------------------CTGTACA TATATATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCCGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------------------------------------------- ------------------------------------------------------------ CTT-------------------------------TGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCT-G CCCGCAAAACATTGTTCTTAACTTCAC--------------------------------- -----------------------CGCCTATCCCAAAACCTATAAGAACTAATGATAAT-- -------C--C---ACCACCCTTTGCTGACTCTCTTTTTGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGACGCGCATGA--------- >LTR7B_chrX_Sltr_fr_1840__chrX_9069069990691127_+_ -GTCAGGCCTCTGAGACCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACATCCAAA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------------------------------------------- ------------------------------------------------------------ CTT-------------------------------TGTAA--T------------------ ---------------------------------------------------CTCCCC--- -------------CA-CCCTT---------GGGAATGTACTTTGTGAGATCCACCCCT-A CCCGCAAAACATTGCTCTTAACTTTAT--------------------------------- -----------------------CGCCTATCCCAAAACCTATAAGAACTAATGATAAT-- -------C--C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATGA--------- >LTR7B_chrY_Sltr_fr_1894__chrY_42728664273294_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACA TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GCA--------------------------------------------- ------------------------------------------------------------ CTT-------------------------------TGTAA--T------------------ ---------------------------------------------------CTCCCT--- -------------CA-CCCTT---------GGGAATGTACTTTGTGAGATCCACCCTT-A CCCGTAAAACATTGCTCTTAACTTTAT--------------------------------- -----------------------CGCCTATCCCAAAACCTATAAGAACTAATGATAAT-- -------C--C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGGTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATGA--------- >LTR7B_chr1_2ltr_int_137__chr1_7887218778872619_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CTTGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------CGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCTCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAA-T----------------------------------- ------------------------CTCCCCCACCCTTAAG--------------AAGGCT ------------------------------------------------------------ --------------------------------------CTTTGTAAT----TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGCGATCCACCCCTTG TCCACAAAACATTGCTCCTAATTCCAC--------------------------------- -----------------------CATCTACCCCAAAATCTATAAGAACTAATGATAAT-- -------CC-C---ATCACACTTTGCTGACTCCTTTTTCAGACTCAGCCAGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT TTTCACATGGACACGTGAGA--CA----- >LTR7B_chr13_2ltr_int_fr_411__chr13_4887202848872459__ TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACA TGTACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAACAACTAAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAA-T----------------------------------- ------------------------CTCCCCCACCCTTAAG--------------AAGATT ------------------------------------------------------------ --------------------------------------CTTTGTAAT----TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG TGCACAAAACATTGCTCCTAACTCCAC--------------------------------- -----------------------CGCCTA-CCCAAAACCTGTAAGAACTAATGATAAT-- -------CC-C---ATCACCCTTTGCTGACTCCTTTTTTAGACTCAGCCTGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACATAAAGCCTG--TTT--TGTTGTCT CTTCACACAGATGTGTGAGA--C------ >LTR7B_chr4_Sltr_fr_1174__chr4_142365974142366339_+_ ----------------------------------------------------TCATATCT CCTGTGAC---------------------------------------------CTGCACA TGTATGTCCAGA------------------------------------------------ -----------------------------TCACCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTAATTTGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAA-T----------------------------------- ------------------------CTCCCTCACCATTAAG--------------AAGGTT ------------------------------------------------------------ --------------------------------------CTTTGTAAT----TCTCCC--- -------------CA-CACTT---------CAGAATGTACTTTGTGAGATCCACCCCCTG CCTGCAAAACATTGCTTCTAACTCCAC--------------------------------- -----------------------CGCCTATCCCAAAACCTATAAGAACTAATGATAAT-- -------CC-----ACCACCCTTTGCTGACTCCTTTTTCGGACTCAGCCGGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACAAAAA-------------------- ----------------------------- >LTR7B_chr14_2ltr_int_fr_475__chr14_7558607175586497__ TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTCTGAC---------------------------------------------TTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TCGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAA---AGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCATCATTGTGATTTGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAA-T----------------------------------- ------------------------CTCCCCCACCCTTAAG--------------AAGGTT ------------------------------------------------------------ --------------------------------------CTTTGTAAT----TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCACTG TCTGCAAAACATTGCTCCTAAC-CCAC--------------------------------- -----------------------CGCCTATCCCAAAACCTGTAAGAATTAATGATAAT-- -------TC-C-----CGCCCTTTGCTGACTCCTTTTTCGGATTCAGCCTGCCTGCACCC AGGTGA-----AA--TAAGCAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACGTGGATGCGTGAGA--C------ >LTR7B_chr15_Sltr_498__chr15_3437606134376491_+_ -GTCAGGCCTGTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCAGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACGAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCATCATTGTGATTTGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAG-T----------------------------------- ------------------------CTCCCCCACCCTTGAG--------------AAGGTT ------------------------------------------------------------ --------------------------------------CTTTGTAAT----TCTCCC--- -------------CA-CCCTT---------AAGAATGTACTTTGTGAGATCCACCC-CTG CCCGCAAAACATTGCTCCTAACTCCAC--------------------------------- -----------------------CGCCTATCCCAAAACCTGTAAGAACTAATGATAAT-- --------C-C---ACCACCCTTTGCTGACTACTTTTTTGGACTCAGCCCGCCTACACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCATATGGACACGAGAGA--CA----- >LTR7B_chr10_Sltr_163__chr10_118963598118964030__ TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CAGCATG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCTACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAA-T----------------------------------- ------------------------CTCCCCCACCCTTAAG--------------AGGGTT ------------------------------------------------------------ --------------------------------------CTTTGTAAT----TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGAGCCACCCTCTG CCCGAAAAACATTGCTCCTAACTCCAC--------------------------------- -----------------------CGCCTATCCCAAAACCTATAAGAACTAATGATAAT-- -------CC-C---ACCACCCTTTGCTGACTCCTTTTTCGGACTCAGCCCCCCCGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCGCAAAAAGCCTG--TTT--GGTGGTCT CTTCACACAGACAGGTGAGA--C------ >LTR7B_chr10_Sltr_191__chr10_6590417165904599__ TGTCAGTCCTCTGAGCTCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------GTGCACA TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATA---------------------------- --------------------------------------------------------TGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTG---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ -------------------------------------------TAAT----CTCCCC--- -------------CA-CCCTT---------GAGAATGTACTTCATGAGATCCACCCCCTG CCCGCAAAACATTGCTCCTAACTCCAC--------------------------------- -----------------------CACCTATCCCAAAACCTATAAGAACTAATGATAAT-- -------C--C---ACCACCCTTTGCTGACTCCTTTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AG--TAAACAGACTTCTTGCTGACACAAAGCCTG--CTT--GGTGGTCT CCTCACACGGATGCGTGAGA--C------ >LTR7B_chr7_Sltr_1539__chr7_150461858150462322__ TGTCAGGCCTCTGAGCTCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------ATGCACA TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTAATTAAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTTA-T----------------------------------- ------------------------CTCCCCCACCCTTAAG--------------AAGGTT ------------------------------------------------------------ --------------------------------------CTTTATAAT----CTCCCC--- -------------TA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG CCCACAAAACACTGCTCCTAACTCCAC--------------------------------- -----------------------CGCCTATCCCAGAACCTATAAGAACTAATGATAAT-- -------CC-C---ACCACCCTTTGCTGACTCCTTTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCTTCTTGCTCACACAAAGCCTG---TT--GGTGGTCT CTACACATGGACATGTGAGA--C------ >LTR7B_chr2_Sltr_805__chr2_188230383188230846__ TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACA TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATACACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAA-T----------------------------------- ------------------------CTCCCCCACCCTTAAG--------------AAGGTT ------------------------------------------------------------ --------------------------------------CTTTGTAAT----CTCCCC--- -------------AA-CCCTT---------GAGCATGTACTTTGTGAGATCCACCCCCTG CCCACAAAACATTGTTCCTAACTCCAC--------------------------------- -----------------------TGCCTATCCCAAAACCTATAAGAACTAATGATAAT-- -------CC-C---ACCACCCTTTGCTGACTCCTTTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAATAGCCTTGTTGCTCACACAAAACCTG--TCT--GGTGGTCT CTTCACATGGACACGTGAGA--C------ >LTR7B_chr1_Sltr_2__chr1_103965565103966003__ TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATTATATTC CTTTTGAC---------------------------------------------CTGCATG TGTACATCCAGG------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAA------------ ------------------------------------------------------------ ----------ATTCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAA-T----------------------------------- ------------------------CTCCCCCACCCTTAAG--------------AAGGTT ------------------------------------------------------------ --------------------------------------CTTTGTAAT----TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTGTGTGAGATCCATCCCCTG CCCACAAAACATTGCTCCTAACTCCAC--------------------------------- -----------------------AGCCGATCCCAAAACCAATAAGAACTAATGATAAT-- -------CC-C---ATCTCCCTTCGCTGACTCCCTTTTCAGACTCAGCCTGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACACGTGAGA--C------ >LTR7B_chr3_Sltr_992__chr3_125641484125641918__ TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC C----------------------------------------------------------- ------------------------------------------------------------ ---------------------------------CTGAAGCAATTGAAG------------ ------------------------------------------------------------ ----------ATCCACGAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAA-T----------------------------------- ------------------------CTCCCCCACCCTTAAG--------------AAGGTT ------------------------------------------------------------ --------------------------------------CTTTGTAAT----CTCCCC--- -------------CA-CCATT---------GAGAATGTACTTTGTGAGATCCACCCCCTG CCCACAAAACATTGCTCCTAACTCCAC--------------------------------- -----------------------TGCCTATCCCAAAACCTATAAGAACTAATGATAAT-- -------CC-C---ACCACCCTTTGCTGACTCCTTTTTTGGACTCAGCCTACCTGCACCC AGGTGC-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--T-T--GGTGGTCT CTTCACACGGACGCGTGTGA--C------ >LTR7B_chrX_Sltr_1788__chrX_2343814023438568__ TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCAAG TAGACATCCAAA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------CTCCAGAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC AAT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAA-T----------------------------------- ------------------------CTCTCCCACCCTTAAG--------------AAGGTT ------------------------------------------------------------ --------------------------------------CT-------------------- --------------A-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG CCCCCAAAACTTTGCTCCTAACTCCAC--------------------------------- -----------------------CGCCTATCCCAAAACCTATAAGAACTAATGATAAT-- -------CC-----ACCACCCTTTGCTGACTCCTTTTTTGGACTCAGCCTGCCTGCACCC AGGTGA-----AA--TAAACAGCTTTGTTGCTCACATAAAGCCTG--T-T----TGGTCT CTTCACACAGACACGTGAGA--C------ >LTR7B_chr3_Sltr_1115__chr3_79333767933840__ TGTAAGGCCTCTGAGCCCAAG-----------------------CTAAACCATCATATCC CCTGTGAC---------------------------------------------CTGCACA TATACATCCAGG------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAA------------ ------------------------------------------------------------ ----------GTCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------T----------TTAA----CTGATGAC GTT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTTCTTCGTAA-T----------------------------------- ------------------------CTCCCCGACCCTTAAG--------------AAGGTT ------------------------------------------------------------ --------------------------------------CTTTGTAAT----CTCCCG--- -------------CA-CCCTT---------GAGAATGTACTCTGTGAGATCCACCCCCTG CCCACAAAACATTGCTCCTAACTCCAC--------------------------------- -----------------------CGCCTATCCCAAAACCTATAAGAACTAATGATAAT-- -------CC-C---ACCACCCTTTGCTGACTCCTTTTTTGGACTCAGCCTGCCTGCACCC AGGTGA-----AA--TAAACAACCTTGTTGCTCACACAAAGCCTG--T-T--GGTGGTCT CTTCACACGGACATGCGTGA--C------ >LTR7B_chr19_Sltr_fr_713__chr19_65058126506242_+_ --TCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATTGTAACC CCTATGAC---------------------------------------------CTGCTCG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAAAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTGCGGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAA-T----------------------------------- ------------------------CTCCCCCACCCTTAAG--------------AAGGTT ------------------------------------------------------------ --------------------------------------CTTTGTAAT----TCTCCC--- -------------CA-CTCTC---------AAGAATGTACTTTGTGAGATCCAC-CCCTG CCCCCAACACATTGCTCCTAACTCCAC--------------------------------- -----------------------CGCCTCTCCCAAAACCTATAAGAACCAATGATAAT-- -------CC-C---ACCACCCTTTGCTGACTCCTTTTTCCCACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGCCT CTTCACACGGACACGTGAGA--CA----- >LTR7Y_chr1_Sltr_fr_129__chr1_9465942894660299_+_ -GTCACGCCTCTGAGCCCAAG-----------------------CTAAGTCATCATATCC CCAATGAC---------------------------------------------CTGCATG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAA-T----------------------------------- ------------------------CTCCCCCACCCTTAAG--------------AAGGTT ------------------------------------------------------------ --------------------------------------CTTTGCAAT----TCTCCC--- -------------CA-CCCTT---------AAGAATGTACTTTGTGAGATCCACGCCCTG ACCCCAAAACATTGCTCCTAACTCCAC--------------------------------- -----------------------CGCCTATCCCAAAACCTATAAGAACCGATGATAAT-- -------CC-C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC AGGTGA-----AA--TAAACAGCATTTTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACACGTGAGA--CA----- >LTR7B_chr16_Sltr_581__chr16_7841327178413703__ TGTCAGGCCTCTGAGCCCAGG-----------------------CTAAGCCATCATATCC CCAGTGAC---------------------------------------------CTGCTCG TATGCATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCCCCATTGTGATTTGCTTCTGTCCCTAC CTAACTGAT-------CAAC---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAA-T----------------------------------- ------------------------CTCCACCACCTTTAAG--------------AAGGTT ------------------------------------------------------------ --------------------------------------CTTTGTAAT----TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCGCTG CCCCAAAAACATTGCTCCTAACTCTAC--------------------------------- -----------------------CGCCTATGCCAAAACCTCTAAGAACTAATGACAAT-- -------CC-C---ATCACCCTTTGCTGACTCCTTTTTCAGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGTTCACACAAACCCTG--TTT--GGTGGTCT CTTCACATGGACACGTGAGA--C------ >LTR7B_chr13_Sltr_424__chr13_6262416862624599_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CGAAGCCATCATATCC CCAGTGAC---------------------------------------------CTGCACA TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAGCTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTAATTTGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAA-T----------------------------------- ------------------------CTCCCCCACCCTTAAG--------------AAGGTT ------------------------------------------------------------ --------------------------------------CTTTGTAAT----TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG CCCGCAAAACATTGCTCCTAACTCCAC--------------------------------- -----------------------CGCCTGTCCCAAAACCTATAAGAACTAATGATAAT-- --------C-C---ACCACCCTTTGCTGAGTCCTTTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCAGACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACACATGAGA--CA----- >LTR7B_chr18_Sltr_638__chr18_5360013553600566__ TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCAGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAAGAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTAATTTGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GCACTTTGTAA-T----------------------------------- ------------------------CTCGCCCACCCTTAGG--------------AAGTTT ------------------------------------------------------------ --------------------------------------CTTTGTAAT----TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCGACCACCTG CCCGCAAAACATTGCTCCTAACTCCAC--------------------------------- -----------------------TGCCTATCCCAAAACCTATAAGAACTGATGATAAT-- --------C-C---ATCACCCTTTGCTGACTCCTTTTTCGGATTCAGCCCACCTGCACCC AGATGA-----AA--TAAACAGACTTGTTGCTCACACAAAGCCTG--TTT--GATGGTCT CTTCACACGGATACATGAGA--C------ >LTR7B_chr5_Sltr_fr_1337__chr5_1736203817362479__ -GTCAGGCCTCTGAGCCCAAG-----------------------CGAAGCCATCATATCC CC-GCGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCATAAAAGAACTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATAAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTAATTTGTTTCTGCCCCACC GTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTGA-T----------------------------------- ------------------------CTCCCCCACCTTTAAG--------------AAGCTT ------------------------------------------------------------ --------------------------------------CTTTGTAAT----TCTCCC--- -------------CA-CCCTT---------GAGAACGTACTTTGTGAGATCCACCCCTTG CCTGCAAAACATTGCTCCTAACTCCAC--------------------------------- -----------------------CGCCCATCCCAAAACCTATAGGAACTCATGATAAT-- -------CC-C---ATCACCCTTTGTGGACTCCTTTTTCAGACTCAGCCTGCCTGCACCT AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--T-T--GGTGG--T CTTCACACGGATGT--------------- >LTR7B_chr4_Sltr_1141__chr4_112755344112755771__ TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCAGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTAATTTGTTTCTGCCCCACC ----CTGAT-------AAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAA-T----------------------------------- ------------------------CTCCCCCACCCTTAAG--------------AAGTTT ------------------------------------------------------------ --------------------------------------CTTTATAAT----TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCC-TG CCCGCAAAACGTTACTCCAAACTCTAC--------------------------------- -----------------------CGCCTATCCCAAAACCTGTAAGAACTAATGATAAT-- -------CC-C---ACCACCCTTTGCTGACTCCTTTTTCGGACTCAGCCTGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACATGTGAGA--C------ >LTR7B_chr3_Sltr_fr_1039__chr3_170032497170032918_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCGTCATATCC CCAGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------CGGCCTTAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACGAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTATTGCTGCCCCAAC CTGACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAA-T----------------------------------- ------------------------CTCCCCCACCCTTAAG--------------AAGGTT ------------------------------------------------------------ --------------------------------------CTTTGTAAT----TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCC-TG CCCGCAAAACATTGCTCCTAACTCCAC--------------------------------- -----------------------CGACTATCCCAAAACCTGTAAGAACTAATGATAAT-- --------C-C---ACCATCCTTTGCTGACTCCTTTTTCGGACTCAGCCCACCTGCACCC AGGT-A-----AA--TAAACAGCCTTGTCGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGATAC--------------- >LTR7B_chr6_2ltr_int_fr_1390__chr6_117664773117665200__ TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCAGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCAC---AGAAGTGAAAATAGC-------------------------- --------------------------------------------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGTCTCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ---------------------------------------------------------GTT ------------------------------------------------------------ --------------------------------------CTTTGTAAT----TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCC-CTG CCCCCAAAACATTGCTCTTAACTCCAC--------------------------------- -----------------------CACCTATCCCAAAACCTATAAGAACCAATGATAAT-- -------CC-C---ACCACCCT-TGCTGACTCCTTTTTCAGACTCAGCCCACCAGCACCC AGTTGA-----AA--TAAACAGCCATGTTGCTCACAGAAAGCCTG--TTT--GGTGATCT CTTCACACGGACACATGAAA--C------ >LTR7B_chr3_Sltr_1077__chr3_3346348533463944__ TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCAGTCAC---------------------------------------------C-GCACA TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCAC---AGAAGTGAAAATAGC-------------------------- --------------------------------------------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CTACCATTGTGATTTGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ---------------------------------------------------------GAA ------------------------------------------------------------ --------------------------------------CTTTATAAT----CTCCCC--- -------------CA-TCCTT---------AAGAATGTACTTTGTGAGATCCACCCCCTG CCCCCAAAACATTGCTCTTAACTCCAC--------------------------------- -----------------------CGCCTATCCCAAAACCTATAAGAACCAATGATAAT-- -------CC-C---ACCACCCT-TGCTGACTCCTTTTTCAGACTCAGCTCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACACATGAGA--C------ >LTR7B_chr1_Sltr_52__chr1_211528463211528890__ TGTCAGACCTCAGAGCCTAAG-----------------------CTAAGCCATCATATCC CCAGTGAC---------------------------------------------CTGCTTG TGTACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCAC---AGAAGTGAAAATAGC-------------------------- --------------------------------------------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ---------------------------------------------------------GTT ------------------------------------------------------------ --------------------------------------CTTGATAAT----TCGCCC--- -------------CA-CCCTT-----------GAATGTACTTTGTGAGATCCACCCTCTG CCCCAAAAACATTGCTCTTAACTCCAC--------------------------------- -----------------------CTCCTATCCCAAAACCTATAAGAACCAATGGTAAT-- -------CC-C---ACAACCCT-TGCTGCCTCCTTTTTTGGACTCAGCCTGCCTGCACCC AGGTGA-----AA--TAAACAGCTATGCTGCTCACACAAAGCCTG--TTT--GGTGATCT GTTCACACGGACACGTGAGA--C------ >LTR7B_chr17_Sltr_601__chr17_5501853155018959__ TGTCAGGGCTCTGAGCCTAAG-----------------------CTAAGCCATCATATCC CCAGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCAC---AAAAGTGAAAATAGC-------------------------- --------------------------------------------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ---------------------------------------------------------GTT ------------------------------------------------------------ --------------------------------------CTTTGTAAT----TCTCCC--- -------------CA-TCCTT---------GAGAATGTATTTTGTGAGATCCACCCCCTG CCCCCAAAACATTGCTCTTAACTCCAC--------------------------------- -----------------------CGCCTATCCCAAAACCTGTAAGAACCAATGATAAT-- -------CC-C---ACCACCCT-TGCTGACTCCTTTTTTGGACTCAGCCTGTTTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTTAAACAAAGCCTC--TTT--GGTGGTCT CTTCACACGGATGCATGAAA--C------ >LTR7B_chr5_Sltr_fr_1320__chr5_149607515149608267__ TGTCAGGCCTCTGAGCACAAG-----------------------CTAAGCCATCATATCC CCAGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCAC---AGAAGTGAAAATAGC-------------------------- --------------------------------------------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ---------------------------------------------------------GTT ------------------------------------------------------------ --------------------------------------TTTTATAAT----TCTCCC--- -------------CA-CCGTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG CCCCCAAAACATTGCTCTTAACTCCAC--------------------------------- -----------------------CGCCTATCCCAAAACCTGTAAGAACCAATGATAAT-- -------CC-C---ACCACCCT-TGCTGACTCCTTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAAGAGCCTTGTTGCTCACACAAATCCTG--TTT--GGTGGTCT CTTCACATGGATGCGTGAGA--C------ >LTR7B_chr10_Sltr_190__chr10_61935616194021__ TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCAGTGAC---------------------------------------------CTGCACA TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATTCAC---AGAAGTGAAAATCGC-------------------------- --------------------------------------------TTAA----CTGATGAT ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCAAC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ---------------------------------------------------------GTT ------------------------------------------------------------ --------------------------------------CTTTGTAAT----TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTCTGAGATCCACCCACTG CCCCCAAAACATTGCTCTTAACTCCAC--------------------------------- -----------------------CGCCTATCCCAAAACCTATAAGAACCAATGATAAT-- -------CC-C---ACCACCCT-TGCTGACTCCTTTTTTGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TCAACAGCCTTGTTGCTCACATAAAGCCTG--TTT--GGCAGTCT CTCCACACGGACACCTGAGA--C------ >LTR7B_chr3_Sltr_982__chr3_1127048111270941__ TGTCAG-TCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCAGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCTTGCAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCGC---AGAAGTGAAAATAGC-------------------------- --------------------------------------------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ---------------------------------------------------------GTT ------------------------------------------------------------ --------------------------------------CTTTGTAAT----TCTCAC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTA CCCCCAAAACATTGCTTTTAACTCCAC--------------------------------- -----------------------CGCCTATCCCAAAACCTATAAGAACCAATGATAAT-- -------CC-C---ACCACCCT-TGCTGACTCTCTTTTTGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTAGTCT CTTCACACGGACACATGAGA--C------ >LTR7B_chr11_Sltr_255__chr11_6448384164484301__ TGTCAGACCTCTGAGCCTAAG-----------------------CTAAGCCATCATACCC CCAGTGAC---------------------------------------------CTGCACT TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ACCCAC---AGAAGTGAAAATAGC-------------------------- --------------------------------------------TTAA----CTGATGGC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCTCCACC CTAACTGAT-------CAAC---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ---------------------------------------------------------GTT ------------------------------------------------------------ --------------------------------------CTTTGTAAT----TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTA CCACCAAAACATTGCTCTTAACTCCAC--------------------------------- -----------------------CACCTATCCCAAAACCTATAAGAGCTAATGATAAT-- -------CC-C---ACCACCCT-TGCTGACTCCTTTTTTGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACACGTGAAA--C------ >LTR7B_chr3_Sltr_1009__chr3_142284604142285031__ TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCAGTGAC---------------------------------------------CTGCACA TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCAC---AGAAGTGAAAATAGC-------------------------- --------------------------------------------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACA CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ---------------------------------------------------------GTT ------------------------------------------------------------ --------------------------------------GTTTGTAAT----TCTCCT--- -------------CA-CCCTT---------GAGAAGTTACTTTGTGAGATCCACCCCCTG TCCCCAAAACATCGCTCTTAACTCCAC--------------------------------- -----------------------CGCCTATCCCAAAACCTATAAGAACTAATGATAAT-- -------CC-C---ACCACCCT-TGCTGACTCGTTTTTTGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACACGTGAAA--C------ >LTR7B_chr18_Sltr_628__chr18_3256929032569717_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCGTCATATCC CCAGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCAC---AGAAGTGAAAATAGC-------------------------- --------------------------------------------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------TCACTATTGTGATTTGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ---------------------------------------------------------GTT ------------------------------------------------------------ --------------------------------------ATTTGTAAT----TCTCCC--- -------------CA-CTCTT---------GAGAATGTACTTTGTGAGATCCA-CCGCTG CCCCCAAAACATTGCTCTTAACTCCAC--------------------------------- -----------------------CGCCTATCCCAAAATCTATAAGAACTAATGATAAT-- -------CC-C---ATCACCCT-TGCTGACTCCTTTTTCGGACTCCGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCTTTGTTGCTCACACAAAGCCTG--TTT--GGTGATCT CTTCACACGGACACGTGAAA--CA----- >LTR7B_chr3_Sltr_fr_984__chr3_112989563112989980_+_ --TCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCAGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------AGGCC---------TGAAG------------ ------------------------------------------------------------ ----------ATCCAC---AGAAGGGAAAACAGC-------------------------- --------------------------------------------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCTATC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ---------------------------------------------------------GTT ------------------------------------------------------------ --------------------------------------CTTTGTAAT----TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCTACCCTCTG CCCCTAAAACATTGCTCTTAACTCCAC--------------------------------- -----------------------CGCCTGTCCCAAAACCTATAAGAACTAATGATAAT-- -------CC-C---ACCACCTT-TGCTGACTCTCTTTTGGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGACTG--TTT--GGTGATCT CTTCACATGGATGAGTGAAA--CA----- >LTR7B_chr6_Sltr_1474__chr6_6979740069797828_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCAGTGAC---------------------------------------------CTTCACG TATACATCCAGC------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCAC---AGAAGTGAAAATAGC-------------------------- --------------------------------------------TTAG----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ---------------------------------------------------------GTT ------------------------------------------------------------ --------------------------------------CTTTGTAAT----TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCTACCCCCTA CCCCCAAAACATTGCTCTTCACTCCAC--------------------------------- -----------------------CTCCTATCCGAAAAACTGTAAGAACCAATGATAAT-- -------CC-C---ACCACCTT-TGCCGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC ATGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCATGAGA--CA----- >LTR7B_chr3_Sltr_1000__chr3_129219362129219790_+_ -GTCAGGCCTCTGAGCCCTAG-----------------------CTAAGCCATCATATCC CCAGTGAC---------------------------------------------TTGCACA TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCAC---AGAAGTGAAAATAGC-------------------------- --------------------------------------------TTAA----CCGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ---------------------------------------------------------GTT ------------------------------------------------------------ --------------------------------------CTTTGTAAT----TCTCCC--- -------------TA-CCTTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG CCCCCAAAACATTGCTCCTAACTCTAC--------------------------------- -----------------------AGCCTATCCCAAAACCTATAAGAACTAATGATAAT-- -------CC-C---ACCGCCCTGTGCTAACTCCTTTTTCGGACTCAACCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAGAGCCTG--TTT--GGTGGTCT CTTCACCCGGACACATGAGA--CA----- >LTR7B_chr7_2ltr_int_fr_1506__chr7_106533200106533658__ TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCAGTGAC---------------------------------------------CTGCACA TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCAC---AGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAG----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTAACTGAT-------CAGT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAA-C----------------------------------- ------------------------CTCCCCCACCTTTAAG--------------AAGGTT ------------------------------------------------------------ --------------------------------------CTTTGTAGT----TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGATATCCACCCCCTG CCCCCAAAACATTGCTCTTAACTCCAC--------------------------------- -----------------------TGCCTATCCCAAAACCTATAAGAACCAATGATAAT-- -------TC-C---ACCACCCTTTGCT---CTCTTTTTCAGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACACGTGAGA--C------ >LTR7B_chr15_Sltr_509__chr15_5201712952017591__ TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCGTATCC CCAGTGAC---------------------------------------------CTGCACA TATACATCCAGA------------------------------------------------ -----------------------------TGACCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCAC---AAAAATGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCATCATTGTGATTTATTTCTGCCCCAAC CTAACTGAT-------CAGT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAA-T----------------------------------- ------------------------CTCCCCCACCCTTAAG--------------AAGGTT ------------------------------------------------------------ --------------------------------------CTTTGTAAC----TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG CCCCCAAACCATTGCTCTTAACTCCAC--------------------------------- -----------------------TGCCTATCCCAAAACCTGTAAGAACTAATGATAA--- -------TC-C---ACCACCCTTTGCTGACTCCTTTTTCAGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTTTTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACACGTGAGA--C------ >LTR7B_chr7_Sltr_1540__chr7_150887243150887702__ TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCAGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAAATGAAG------------ ------------------------------------------------------------ ----------ATCCAC---AAAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC GTAATTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAA-T----------------------------------- ------------------------CTCCCCCACCCTTAAG--------------AAGGTT ------------------------------------------------------------ --------------------------------------CTTTGTAAT----TGTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCATCCC-TG CCCCTAAAACATTGCTCTTAACTCCAC--------------------------------- -----------------------CTCCTATCCCAAAACCTATAAGAACCAATGATAAT-- -------CC-C---ACCACCCTTTGCTGACTGTCTTTTCAGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTACTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACTGACGCATGAGA--C------ >LTR7B_chr12_Sltr_355__chr12_4603657946037041_+_ -GTCAGGCCTCTGAGCCTAAG-----------------------CTAAGCCATCATATCC CCAGTGAC---------------------------------------------CTGCAGG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAA-AAAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC TTT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTATTTCTGTCCCAAC CTAACTGAT-------CTAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAA-T----------------------------------- ------------------------CTCCCCCACCCTTAGG--------------AAGGTT ------------------------------------------------------------ --------------------------------------CTTTATAAT----CTTCCC--- -------------CA-CCCTT---------AAGAAGATTCTTTGTGAGATCCGCCCCATG CCCTCAAAACATTGCTCTTAACTCCAC--------------------------------- -----------------------CGCCTATTCCAAAACCTATGAGAACCAATGATAAT-- -------CC-----ACCACCCTTTGCTGACTCCTTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACACATGAAA--CA----- >LTR7B_chr14_Sltr_465__chr14_5095272050953181_+_ -GTCAGGCCTCTGAGCCTAAG-----------------------CTAAGCCATCATATCC CCAGTGAC---------------------------------------------CCGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCTTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCATAAAAAAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------TCACCATTGTGATTTATTTCTGCCACAAC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAA-T----------------------------------- ------------------------CTCCCTCACCCTTAGG--------------AAGGTT ------------------------------------------------------------ --------------------------------------CTTTATAAT----CTCCCC--- -------------CA-CCCAT---------AAGAAGGTTCTTTGTGAGATCCACTCC-TG CCCCCAAAACATTGCTCCTAACTCCAC--------------------------------- -----------------------CGCCTATCCCCAAACCTGTAAGAACTAATGATAAT-- -------CC-----ACCACCCTTTGCTGACTCCTTTTTCAGACTCAGCCCACCTGTACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT---GTGGTCT CTTCACACAGACACATGAAA--CA----- >LTR7B_chr2_Sltr_821__chr2_200862214200862677_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCAGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAAAAGTAAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTATTTCTGCCCCAAC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------ATACTTTGTAA-T----------------------------------- ------------------------CTCCCCCACCCTTAGG--------------AAGGTT ------------------------------------------------------------ --------------------------------------CTTTATAAT----CTCCCC--- -------------CA-CCCTT---------AAGAAGGTTCTTTGTGAGATCCGCCCCCTG CTCCCAAAACATTGCTCTTAACTCCAC--------------------------------- -----------------------CGCCTATCCCAAAACCTATAAGAACTAATGATAAT-- -------CC-----ACCACCCTTTGCCGACTCCTTTTTCTGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTA---GTGGTCT CTT--CACAGACACGTGAAA--CA----- >LTR7B_chr4_Sltr_1253__chr4_8453845084538883_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCAGTGAC---------------------------------------------CCACACG TATATATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTATTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAA-T----------------------------------- ------------------------CCCCCCCACCCTTAAG--------------AAGGTT ------------------------------------------------------------ --------------------------------------CTTTGTAAT----TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG CCTGCAAAACATTGATCCTAACTCCAC--------------------------------- -----------------------CGCCTATCCCCAAACCTATAAGAACTAATGATAAT-- -------CC-----ACCACCCTTTGCTGACTCCTTTTTCGGACACAGCCTGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGATGCATGAAA--CA----- >LTR7B_chr8_Sltr_1646__chr8_8548992285490353_+_ -GTTAGGCCTCTAAGCCCAAG-----------------------CTAGGCCATCATATCC CCAGTGAC---------------------------------------------CTACACA TATACATCTAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTATTTCTGCCCCAAC CTAACTGAT-------CAGT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAA-T----------------------------------- ------------------------CTCCCCCACCCTTAAG--------------AAAGTT ------------------------------------------------------------ --------------------------------------CTTTGTAAT----TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCATCCCCGG CCTTCAAAACATTGCTCCTAACTCCAC--------------------------------- -----------------------CATCTATCCCAAAACCTATGAGAACTAACGATAAT-- -------CC-----ACCACCATTTGCTGACTCCTTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGTCATGTTGCTCACGCAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACACGTGAGA--CA----- >LTR7B_chr21_Sltr_948__chr21_2862146928621901__ TGTCAGGCCCCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCAGTGAC---------------------------------------------CTGCACA TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAAAAGTGAAAACAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTATTTCTGCCCCAAC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------ATACTTTGTAA-T----------------------------------- ------------------------CTCTCCCACCCTTAAG--------------AAGGTT ------------------------------------------------------------ --------------------------------------CTTTGTAAT----TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG CCCCCAAAACATTGCTCTTAATTCCAC--------------------------------- -----------------------CGCCTATCCCAACACCTATAAGAACCAATGATAAT-- -------CC-C---ACCACCCTTTGCTGACTCCTTTTTTGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGTGAAA--C------ >LTR7B_chrX_Sltr_1767__chrX_134945033134945465_+_ -GTTAGGTCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCAGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAATCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAAAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTATTTCTGCCCCAGC CTAACTGAT-------CAAA---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAA-T----------------------------------- ------------------------CTCCCCCACCCTTAGG--------------AAGGTT ------------------------------------------------------------ --------------------------------------CTTTATAAT----CTCCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCGCCCCGTG CCCCCAAAACATTGCTCTTAACTCCAC--------------------------------- -----------------------CGCCTATCCCAACACCTATAAGAACCAATGATAAT-- -------CC-C---ACCACACTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCAAACAAAGCCTG--TTT--GGTTGTCT GTTCACACGGATGCGTGAGA--CA----- >LTR7B_chr2_Sltr_870__chr2_5397333953973802_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCAGTGAC---------------------------------------------CTGCATG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAAAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATAAC ATT--------------------------------------------------------- -------------------------------TCACCATTGTGATTTGTTTCTGCCCCACC CTAACAGAT-------GAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAA-T----------------------------------- ------------------------CTCCCCCACCCTTAGG--------------AAGTTT ------------------------------------------------------------ --------------------------------------CTTTGTATT----TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG CCCCCAAAACATTGCACTTAACTCCAC--------------------------------- -----------------------CACCTATTCCAAAACCTATAAGAACTAATGGTAAT-- -------CC-C---AACACCCTTTGCTGACTCCTTTTTCAGACTCAGCCTGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCCCACGGACGCGCGAGA--CA----- >LTR7B_chr1_Sltr_fr_110__chr1_4533635445336787_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC TCAGTAAC---------------------------------------------CTGCACT TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCTACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATCAC ATT--------------------------------------------------------- -------------------------------CCACCACTGTGATTTGTTTCTGCCCCACG CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTGGTAA-T----------------------------------- ------------------------CTCCCCCACCCTTAAG--------------AAGGTT ------------------------------------------------------------ --------------------------------------CTTTATAA-----TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG CCCCCAAAACATTGCTCTTAACTCCAA--------------------------------- -----------------------TGCCTATCCCAAAACCTATAAGAACTAATGATAAT-- -------TC-C---ACCACCCTTTGCTGACTCCTTTTTTAGACTCAGCCTGTCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCAGACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACACACGTGA--------- >LTR7B_chr22_Sltr_959__chr22_1893812018938550__ TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CTTGTGAC---------------------------------------------CTGCACG GATACATCCAGA------------------------------------------------ -----------------------------TGGGCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAGAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTCATAA-T----------------------------------- ------------------------CTCCCCCACCCTTAAG--------------AAGGTT ------------------------------------------------------------ --------------------------------------CTTGGTAAT----TCTCCC--- -------------CA-CCCTT---------GAGAAGGTACTTTGTGAGATCCA-CCCCTG CCCCCAGAACATTGCTCTTAACTCCAC--------------------------------- -----------------------TGCCTATCCCAAAACCTGTAAGAACTAATGATAAT-- -------CC-C---ACCACCCTTTGCTGACTCCTTTTTTGGACTCAGCCTGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCATACAAAG-CTG--GTT--GGTGGTCC CTTCACAGGGACACATGAGA--C------ >LTR7B_chr22_KI270734v1_random_Sltr_970__chr22_KI270734v1_random_163419163849__ TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CTTGTGAC---------------------------------------------CTGCACG GATACATCCAGA------------------------------------------------ -----------------------------TGGGCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAGAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTCATAA-T----------------------------------- ------------------------CTCCCCCACCCTTAAG--------------AAGGTT ------------------------------------------------------------ --------------------------------------CTTGGTAAT----TCTCCC--- -------------CA-CCCTT---------GAGAAGGTACTTTGTGAGATCCA-CCCCTG CCCCCAGAACATTGCTCTTAACTCCAC--------------------------------- -----------------------TGCCTATCCCAAAACCTGTAAGAACTAATGATAAT-- -------CC-C---ACCACCCTTTGCTGACTCCTTTTTTGGACTCAGCCTGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCATACAAAG-CTG--GTT--GGTGGTCC CTTCACAGGGACACATGAGA--C------ >LTR7B_chr3_2ltr_int_fr_1072__chr3_2755337227553803__ TGTCAGGCTTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACC TACACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTTTGATTTGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAA-T----------------------------------- ------------------------CTCCCCCACCCTTAAG--------------AAGGTT ------------------------------------------------------------ --------------------------------------CTTTGTAAT----TCTCCC--- -------------CA-TCCTT---------GAGAATGTACTTTGTGAGTTCTACCCCCTG CCTGCAAAACATTGCTCCTAACTCCAC--------------------------------- -----------------------CACCTATCCCAAACCCTATAAGAACTAACGATAAT-- --------C-C---ACCACTCTTTGCTGACTCCTTTTTCAGACACAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGCTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACAAGGACATGTGAGA--C------ >LTR7B_chr3_2ltr_int_fr_1073__chr3_2759900227599433_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAT---------------------------------------------CTGCACC TACACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAAGTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGGC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCTCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGAAA-T----------------------------------- ------------------------CTCCCGCACCCTTAAG--------------AAGGTT ------------------------------------------------------------ --------------------------------------CTTTGTAAT----TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCTCTG CCCGCAAAACATTGCTCTTAACTCCAC--------------------------------- -----------------------CGCCTATCCCAAAACCTATAAGAGCTAATGATAAT-- --------C-C---ACCACCCTTTGCTGACTCCTTTTTCGGACTCAGCCCGCCTGCACCC GGGTGA-----AA--TAAACAGCCTTGCTGTTCACACAAATCCTG--TTT--GGTGGTCT CTTCACACGGACGCTTGAGA--CA----- >LTR7B_chrX_2ltr_int_fr_1837__chrX_8272676682727197_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCATG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAACAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCTACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAA-T----------------------------------- ------------------------CTCCCCCACCCTTAAG--------------AAGGTT ------------------------------------------------------------ --------------------------------------CTTTGTAAT----TCTCCC--- -------------CA-CTCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG CCTGCAAAACATTGTTCCTAACTCCAC--------------------------------- -----------------------CACCTATCCCAAAACCTATAAGAACTAATGATAAT-- --------C-C---ACCACCCTTTGCTGACTCCTTTTTCAGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCTTATTGCTCACACAAAACCTG--TTT--GGTGGTCT CTTCACACAGACGCGTGAGA--CA----- >LTR7B_chr6_Sltr_1431__chr6_158343885158344350_+_ -GTCAGGCCCCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATCGTGATTTGTTTCTTCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAA-T----------------------------------- ------------------------CTCCCCCACCCTTAAG--------------AAGTTT ------------------------------------------------------------ --------------------------------------CTTTGTAAT----CTCCTC--- -------------CA-CCCTT---------AAGAATGTTCTTTGTGAGATCCACCCCCTG CCCGCAAAACATTGCTCCTAACTCCAC--------------------------------- -----------------------CACCTATCCCAAAACCTATAAGAACTAATGATAAT-- --------C-C---ACCACCCTTTGCTGACTCTTTTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TGT--GGTGGTCT CTTCACACAGACGTGTGAGA--CA----- >LTR7B_chr4_Sltr_1229__chr4_3502182435022255__ TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCATA TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAACAACTAAAC------------ ------------------------------------------------------------ ----------ATCCACAAAATAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAA-T----------------------------------- ------------------------TTCCC---CCCTTAAG--------------AAGGTT ------------------------------------------------------------ --------------------------------------CTTTGTAAT----TCTCCC--- -------------CA-CCCTT---------GAGAATGTATATTGTGAGATCCACCACCTG CCAGCAAAACATTGCTCCTAACTCCAC--------------------------------- -----------------------CGCCTGTCCCAAAACCTGTAAGAACTAATGATAAT-- -------CC-C---ACCACCCTTCGCTGACTCCTTTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCTTGCTGTTCACACAAATCCTG--T-T--GGTGGTTT CTTCACAAGGACGCGTGAGA--C------ >LTR7B_chr9_Sltr_1695__chr9_3337753233377963__ TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCATG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAATTGAAG------------ ------------------------------------------------------------ ----------ATCCACAGAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCA---TCGTGATTTGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAA-T----------------------------------- ------------------------CTCCCCCACCCTTAAG--------------AAGTTT ------------------------------------------------------------ --------------------------------------CTTTGTAAT----TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATTCACCCCTTG CCCGCAAAACACTGCTCCTAACTCCAC--------------------------------- -----------------------CGCCTATCCCAAAACCTATAAGAACTAATGATAAT-- -------CC-C---AGCACCCTTTGCTGACTCCTTTTTCGGACTGAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCATG--T-T--GGTGGTCT CTTCACACGGATGCGCGTGA--C------ >LTR7B_chr3_2ltr_int_fr_1005__chr3_136223285136223714__ TGTCAGGCCTCTGAGCCCAAG-----------------------TTAAGCCATCATATCC CCTGTGAT---------------------------------------------CTGCACG TATAAATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATTAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTTTTTCTGCTCCACC CTAACTGAT-------CGAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAA-T----------------------------------- ------------------------CTCCCCCACCCTTAAG--------------AAGGTT ------------------------------------------------------------ ------------------------------------------GTAAC----TCTCCC--- -------------CA-CCCTT---------AAGAATGTACTTTGTGAGATCCACCCCCTG CCTGCAAAACATTGCTCCTAACTCCAC--------------------------------- -----------------------TGCCTATCCCAAAACCTGTAAGAACTAATGATAAT-- -------CC-C---ACTACCCTTTGCTGATTCCTTTTTCGGACTCACTCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TT---GGTGGTCC CTTCACACGGACACATGTGA--C------ >LTR7B_chr8_Sltr_1604__chr8_121815816121816289__ TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCATA TATACATCCAGC------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAA-AGAAGTGAAAATGGC-------------------------- ---------------------------------C----------TTAA----CTGAGGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTCTTTCTGCCCCACT CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAA-T----------------------------------- ------------------------CTCCCCCACCCTTAAG--------------AAGTTT CTT-------------------------------TGTAA--TCTCACCCACCCTTAAGAA GGT------------------------------TTTTG----GTAAT----TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG CCTGCAAAACATTGCTCCTAATTCCAC--------------------------------- -----------------------CGACTATCCCAAAACCTGTAAGATCTAATGATAAT-- -------CC-C---ACCACCCTTTGCTGACTCCTTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGATGCTCACACAAAGCCTG--TTT--GGTGGTCC CTTCACACGGATGCACGTGA--C------ >LTR7B_chr1_2ltr_int_fr_67__chr1_228682353228682714__ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ --------------------------------------------------------TGAT CTG--------------------------------------------------------- -------------------------------CCAACATTATGATTTGTTTCTGCCCCACC CTAACTGAT-------CAAC---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTG---------------------------------------- ------------------------------------------------------------ ------------------------------------TAA--TCTCCACCACCCTT----- -------------------------AAGAAGTTTCTTT----GCAAT----CTCCCC--- -------------CA-CCCTT---------GAGAAGATACTTTGTGAGATCCACCCCCTG CCTGGAAAACATTGCTCCTAACTCCAC--------------------------------- -----------------------CGCCTATCCCAAAACCTGCAAGAACTAATGATAAT-- --------CCC---ACCACCCTTTGCTGACTCTCTTTTTGGACTCAGCCCACCTACACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGAAGCATGAGA--C------ >LTR7B_chr1_Sltr_fr_72__chr1_229418824229419191_+_ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------GGCCGGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTG---------------------------------------- ------------------------------------------------------------ ------------------------------------TAA--TCTCCCCCACCCGT----- -------------------------AAGAAAGTTCTTT----GTAAT----TCTCCT--- -------------CA-CCCTT---------GAGAATGTACTTAGTGAGATCCACCCCCTG CCCACAAAACATTGCTCCTAACTCCAC--------------------------------- -----------------------CGCCTATCCCCAAACCTATAAGAACTAATGATAAT-- --------CC----ACCACCCTTTGCTGACTCTCTTTTTGGACTCAGTCCCCCTGCACCT AAGTGA-----AA--TAAACAGCTTTGTTGCCCACACAAAGCCTG--TTT--GGTGATCT CTTCACACGGACACGTGAGA--CA----- >LTR7B_chr5_Sltr_fr_1376__chr5_9386959793869997_+_ ------------------------------------------------------------ ------------------------------------------------------------ -----------A------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----ATGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTG---------------------------------------- ------------------------------------------------------------ ------------------------------------TAA--TCTCCCCCACCCTTAAGAG GGTTCTCTGTAATCTCCCCCACCATAAGAAGGTTCTTT----GTAAT----TCTCCC--- -------------CA-CCTTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG CCCGCAAAACATTGCTCCTAACTCCAC--------------------------------- -----------------------TGCCTATCCCAAAACCTGTAAGAACTAATGATAAT-- --------CCC---ACCACCCTTTGCTGATTCTCTTTTCGGGCTCAGCCCGCCTGCGCCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGCGTGAGA--CA----- >LTR7B_chr12_Sltr_368__chr12_6933248869332914_+_ -ATCAGGCCTCTCAGCCCAAG--------------------------------------- -------C---------------------------------------------TA----- -----AGCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCACAGTGATTTGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTG---------------------------------------- ------------------------------------------------------------ ------------------------------------TAA--TCTCACCAACCCTTAAGAA GGTTCTTTGTAATCTCCCCACCCTTAAGAAGGTTCTTT----GTAGT----TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG CCCACAAAACATTGCTCCTAACTCCAC--------------------------------- -----------------------CGCCTATCCCAAAACCTTTAAGAACTAATGATAAT-- --------CC----ACCACCCTTTGCTGACTCTCTT--CAGACTTAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTACTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACAGGGACGCGTGTAA--CA----- >LTR7B_chr15_Sltr_508__chr15_4973379049734255__ TGTCAGGTCTCTGAGCCCAAG--------------------------------------- -------C---------------------------------------------CTGCAGG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------T----------TTAG----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCACTGTGATTTGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTG---------------------------------------- ------------------------------------------------------------ ------------------------------------TAA--TCTCCCTCACCCTTAAGAA GGTTCTTTGTAATCTCCCCACCCTTAAGAAAGTTCTTT----GTAAT----CTCCCC--- -------------CA-CCCTT---------AAGAATGTACTTTGTGAGATCCACCCCCCG CCCACAAAACATTGCTCCTAACTCCAC--------------------------------- -----------------------CACCTATCCCAAAACCTATAACAACTAATGATAAT-- --------CCC---ACCACTCTTTGCTA--TCTTTT--TGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAAGAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACAGGGATGCGCGTGA--C------ >LTR7B_chr1_Sltr_90__chr1_248210437248210931_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------TTAAGCCATCATATCC CTTGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTAACTGAT-------CAGT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTG---------------------------------------- ------------------------------------------------------------ ------------------------------------TAA--TGTCCCCCACCCTTAAGAA GGTTCTTTGTAATCTCCCCACCCTTAAGAAGGTTCTTT----GTAAT----TCTCCC--- -------------CA-CCCTT---------GAGAGTGTACTTTGTGAGATCCACCACCTG CCCCCAAAACATTGCTCCTAACTCCAC--------------------------------- -----------------------TGCCTATCCCAAAACCTGTAAGAACTAATGATAAT-- --------CCC---ACCACACTTTGCTGATTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACACTTGAGA--CA----- >LTR7B_chr15_Sltr_503__chr15_4128267841283105__ TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACA-AAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- --------------------------------CACCATTGTGATTTGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTG---------------------------------------- ------------------------------------------------------------ ------------------------------------TAA--T------------------ -------------CTCCCCACCCTTAAGAAGGTTCTTT----GTAAT----TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG CCCACAAAACATTGCTCCTAACTCCAC--------------------------------- -----------------------CGCCTATCCCAAAACCTGTAAGAACTAATGATAAT-- --------CC----ACCACCCTTTGCTGACTCTCTTTTCCGACTCATCCCACCTGCACCC AGGTGA-----AA--TAAACAGGCTTGTTGTTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACACGTGAC---------- >LTR7B_chr6_Sltr_1434__chr6_158888752158889215__ TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGCCAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAGGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCAAAATTGTGATTTGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTG---------------------------------------- ------------------------------------------------------------ ------------------------------------TAA--TCTCCCCCACCCTTAAGAA GGTTCTTTATAATCTCCCCACCCTTAAGAAGGTTCTTT----GTAAT----TCTCCC--- -------------CA-CCCTT---------GAGAATGTTCTTTGTGAGATCCACCCCCTG CCCACAAAACATTGCTCCTAACTCCAC--------------------------------- -----------------------CGCCCATCCCAAAACCTCTAAGAACCAATGATAAT-- --------CCC---ACCGCCCTTTGCAGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGAATGCGTGAGA--C------ >LTR7B_chr2_Sltr_fr_756__chr2_106618322106618750__ TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCAGATCC CCTGTGAC---------------------------------------------CTGCAC- TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTG---------------------------------------- ------------------------------------------------------------ ------------------------------------TAA--TCTCCCCC----------- -------------------ACCCTTAAGAAGGTTCTTT----GTAAT----TCTCCC--- -------------CA-CCCTG---------GAGAATGTACTGTGTGAGATCCACCCCCTG CCCACAAAACATTGCTCCTAACTCCAC--------------------------------- -----------------------CGCCTATCCCAAAACCTCTAAGAACTAATGATAAT-- --------CCC---ACCACACTTTGCTGACTCTCTT--CGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAACCTG--TTT--GGTGCTCT CTCCACACCGACGTGTGAG---------- >LTR7Y_chr11_Sltr_fr_203__chr11_122692867122693353__ TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCT CCTGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTG---------------------------------------- ------------------------------------------------------------ ------------------------------------TAA--TCGCCCCCACCCTTAAGAA GGTTCTTTGTAGTCTCCCCACCCTTGAGAAGGTTCTTT----GTCAT----TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG CCCACAAAACATTGCTGCTAACTCCAC--------------------------------- -----------------------TGCCCATCCCAAAACCTCTAAGAACTAATGATAAT-- --------CCC---ACCACCCTTTGCTGACTCTCTTTTCGGACTCTCCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACACCACCTG--TTT--GGTGGTCT CTTCACTCG---------GA--CA----- >LTR7B_chr5_2ltr_int_fr_1369__chr5_7688658876887017__ --TCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTAATTTGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTG---------------------------------------- ------------------------------------------------------------ ------------------------------------TAA--TCGCCCCAACCCTT----- -------------------------AAGAAGGTTCTTT----GCAAT----TCTCCC--- -------------TA-TCCTT---------GAGAATGTACTTCGTGAGATCCACCCCCTG CCTGCAAAAAATTGCTCCTAACTCCAC--------------------------------- -----------------------CGCCTATCCCAAAACCTATAAGAACTAATGATAAT-- ---------CC---ACCACCCTTTGCTGACTCTCTTTTTGGACTCAGCCCACCTGCACCC AGGTAA-----TA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACATATGAGA--C------ >LTR7B_chr4_Sltr_1239__chr4_6251438962514850_+_ -GTCAGGCCTCTGAGCCCCAG-----------------------CTAAGCCATCATATGT CCTGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATCGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCTCCATTGTGATTTGTTTCTGCTCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTG---------------------------------------- ------------------------------------------------------------ ------------------------------------TAA--TCTCCCCGACCCTTAAAAA GATTCTTTGTAATCTCCCCACGCATAAGAAGGTTCTTT----GCA-T----TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTCCTGAGATCCACCCCCTG CCCACAAAACATTGCTCCTAACTCCAC--------------------------------- -----------------------CGCCTATCCCAAAACCTATAAGAACTAATGGTAAT-- --------CCC---ACCACCC-TCGCTGACTCTCTTTTTGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAACCTG--TTT--GGTGGTCT CTTTACATGAACACATGAGA--CA----- >LTR7B_chr2_Sltr_903__chr2_8383416483834595_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCG CCTGTGAC---------------------------------------------CTGCACG TGTACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAATAAGTGAAAATAGA-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTG---------------------------------------- ------------------------------------------------------------ ------------------------------------TAA--TCTCCCCCACCCTTAAGAA GGTTCTTTG----------------------------------TAGT----TCTCCC--- -------------CA-CCCTT---------GAGAATGTGCTTTGTGAGAGCCACCCCCTG CCCACAAAACATTGCTCCTAACTCCAC--------------------------------- -----------------------CACCTCTCCCAAAACCTTTAAGAACTAATGATAAT-- --------CCC---ACCACCCTTTGCTGACTCTCTTTTTGGACTCAGCCCACCTGCACCC GGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--T-T--GGTGGACT CTTTACACGGACACATGAGA--CA----- >LTR7B_chr4_Sltr_1251__chr4_8255879982559260_+_ -GTCAGGCTTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAA---AGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCATCATTGTGATTTGTTTCTTCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTG---------------------------------------- ------------------------------------------------------------ ------------------------------------TAA--TCTCCCCCACCCTTAAGAA GGTTCTTTGTAATTTCCCCACCCCTAAAAATGTTCTTT----GTAAT----TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG CCTGCAAAACATTGCTCCTAACTCCAC--------------------------------- -----------------------CGCCTATCCCAAAACCTACAAAAACTAATGATAAT-- --------CCC---ACCACCCTTTGCTGACTCCTTTTTCGGACTCAGCCCACATGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--T-T--GGTGGACT CTTCACACGGACCCATGTGA--CA----- >LTR7B_chr1_Sltr_69__chr1_228956163228956626__ TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG CGTACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAATAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACT CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTG---------------------------------------- ------------------------------------------------------------ ------------------------------------TGA--TTTTCTCCACCCTTAAAAA GATTGTTTGTAATCTCCCCACCCTTAAGAAGATTCTTT----GTAAT----GCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG CCCACAAAACATTGCTCCTAACTCCAC--------------------------------- -----------------------CGCCTATCCCCAAACCTACAAGAACTAATGATAAT-- --------CCC---ACCATGCTT-GCTGAGTCTCTTTTTGGACTCAGCCCGCCTGCACAC AGGTGA-----AA--TAAACAGCCTTGTGTCTCACACAAAGCCTA--TTT--GGTGGTCT CTTCATATGGACACATGAGA--C------ >LTR7B_chr10_Sltr_179__chr10_4332056443321025_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCGTCATATCC CCTGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTAATTTGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTG---------------------------------------- ------------------------------------------------------------ ------------------------------------TAA--TCTCCCCCACCCTTAAGAA GGTTCTTTATAATCTCCCCACCCTTAAGAAGGTTCTTT----GTAAT----TCTCCC--- -------------CA-CCCTT---------GAGAACGTACTTTTCGAGATCCACCCCCTG CCCACAAAACATTGCTTCTAACTCCAC--------------------------------- -----------------------TGCCTATCCCCAAACTTATAAGAACTAATGATAAT-- --------CCC---ACCACCCTTTGCTGA--CTCTTTTCAGACTCAGCCCGCCTGCACAC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACACATGAGA--CA----- >LTR7B_chr1_Sltr_146__chr1_9157373691574195__ TGTCAGGCCTCTGAGCCCACG-----------------------CTAAGCCATCATATCC CCAGTGAC---------------------------------------------CTGCAGG TGTACATCCAGA------------------------------------------------ -----------------------------TGGTCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ACCC---AAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCATC CTAACTGGT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTG---------------------------------------- ------------------------------------------------------------ ------------------------------------TAA--CCTCCCCCACCCTTAAGAA GATTCTTTATAATCTCCCCACGATTAAGAAGTTTCTTT----GTAAT----TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCA-CCCCTG CCCCCAAAACATTGCTCCTAACTCCAC--------------------------------- -----------------------CGCCTATCCCAAAACCTATAAGAACTAATGATAAT-- --------CCC---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGGGGTCT CTTCACACGGACGCGTGAGA--C------ >LTR7B_chr17_Sltr_fr_617__chr17_8039979480400230_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCAGGGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAGGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCATC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTG---------------------------------------- ------------------------------------------------------------ ------------------------------------TAA--TCTCTCCCACCCTTAAGAA GGTTCTTCGTAA--------------------TTCTTT----GTAAT--------CC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG CCTGCAAAACATTGCTCCTAACTCCAC--------------------------------- -----------------------CGCCTATCCC-AAACCTACAAGAACTAATGATAAT-- --------CCC---ACCACACTTTGCTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGATGCGTGTGA--C------ >LTR7B_chr12_Sltr_301__chr12_122453063122453492__ TGTCAGGCCTCTGAGCCCAAA-----------------------CTAAGCCATCATATCT CCTGTG-----------------------------------------------CTGCACG AATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCACTGTGATTTGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTA---------------------------------------- ------------------------------------------------------------ ------------------------------------TAA--TCTCCCCCACCCTTAAGAA GGT------------------------------TCTTT----GTAAT----TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG CCTGCAAAACATTGCTCCTAACTCCAC--------------------------------- -----------------------CGCCTATCCCAAAACCTAAAGGAACTAGTGGTAAT-- --------CAC---GCCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGCTGCACACACAAACCCTG--TTT--GGTGGTCT CCTCACAC-AACGCATGAGA--C------ >LTR7B_chr5_Sltr_1341__chr5_180421303180421731__ TGTCAGGCCTCTGAGCCCAGG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CGGCACC TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGTCCCAAC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTGG---------------------------------------- ------------------------------------------------------------ ------------------------------------TAA--TCTCCCCCACCCTTAAGAA GGT------------------------------TCTTT----GTAAT----TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG CCTGCAAAACATTGCTCCTAACACCAC--------------------------------- -----------------------CGCCTATCCCAAAACCTATAAGAACCA-TGATAAT-- --------C-C---ACCACCCTTTGCTGACCCT--TTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTGACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCATGAAA--C------ >LTR7B_chr5_Sltr_1353__chr5_3526854335269048__ TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TTTACATCCACA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTCTCTGCCCCACC CTCACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTG---------------------------------------- ------------------------------------------------------------ ------------------------------------TAA--TCTCTGCCACCCTTAAGAA GGTTCTTTATAATCTCCCCACCCTTAAGAAGGTTCTCT----GTAAT----TCTCCC--- -------------CA-CCCTT---------GAGAACGCACTTTGTGAGATCCACCCCCAG CCTGCAAAACATTGCTCCTAACTCCAC--------------------------------- -----------------------CGCTTATCCCAAAACCTATAAGAACTAATGATAAT-- --------CCC---ACCACCCT-TGCTGACTGTCTTTTTGGACTCAGCCTGCCTGCACCC AGGTGC-----AA--TAAACAGACTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACGTGGACGCATGAGA--C------ >LTR7B_chr7_Sltr_1582__chr7_9715392597154379__ TGTCAGGCCTCTTAACCCAAG-----------------------CTAAGCCAT------- --TGTGAC---------------------------------------------CTGCACA TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAAATGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACT CTAACTCAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTG---------------------------------------- ------------------------------------------------------------ ------------------------------------TAA--TCTCCCCCACCCTTAAGAA GGTTCTTTGTAATCTCCCCACCCTTAAGAAGGTTCTTT----GTAAT----TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTATGAGATCCACCCCCTG CCTGCAAAACATTGCTCCTAACTCCAC--------------------------------- -----------------------CGCCTATCCCAAAACCTATAAGAACTAATGATAAT-- --------CCC---ACCACCCTTTGCTGACTCTCTTTTTGGACTCAGCCTGCCTGCACTC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGATGCATGTGA--C------ >LTR7B_chr8_Sltr_1633__chr8_6737801067378442_+_ -GTCAGGCCTCTGAGCCCAAA-----------------------CTAAGCCATCATATAA CCTGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGCAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACT CTAACTAAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTG---------------------------------------- ------------------------------------------------------------ ------------------------------------TAA--TCTCCCCCACCCTTAAGAA GGTTCTTTGTAATTCTCCCACCCTTGAGAATG---------------------------- -------------------------------------TACTTTGTGAGATCCACCCCC-A CCCGCAAACCATTGCTCTTAACTCCAC--------------------------------- -----------------------TGCCTATCCCAAAACCTGTAAGAACTAATGATAAT-- --------CCC---ACCACCCTTTGCTGACTCTCTTTTTGGACTCAGCCTGCCTGCATCC AGGTGA-----AG--TAAACAGCCTCGTTGCTCACACAAAGCCTG---TT--GGTGGTCT CTTCACACGGACGCATGTGA--CA----- >LTR7B_chr1_Sltr_28__chr1_169057140169057547__ TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGGCATCATATCC CCTGTGAC---------------------------------------------GTGCACG TATGCATCCAGA------------------------------------------------ -----------------------------TGGACTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGGAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTG-CCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTG---------------------------------------- ------------------------------------------------------------ ------------------------------------TAA--TCTCCCCCATCCTTAAGAA GATTCTTTGTAATTCTCCC----------------------------------------- --------------A-CTCTT---------GAGAATGTACTTTGAGAGGACCAC--CCTG TCTGCAAAACATTGCTCCTAACTCCAC--------------------------------- -----------------------CGCCCATCCCAAAACCTATAAGAACTAATGATAAT-- --------CCC---ACAACCCTTTGCTGACTCTCTTTTCAGACTCAGCCCCCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTG----------------------------CT CTTCACATGGATGCGTGTGA--C------ >LTR7B_chr2_Sltr_892__chr2_7490193074902390__ TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAACCATCATATTC CCTGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAC------------ ------------------------------------------------------------ ----------ATCCACAAA---AGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTTTGATTTGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTG---------------------------------------- ------------------------------------------------------------ ------------------------------------TAA--TCTCCCCCACCCTTAAGAA GGTTCTTTGTAATCTCCCCACCCTTAAGAAGGTTCTTT----GTAAT----TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACTTCCTG CCTGCAAAACATTGCTCCTAACTCCAC--------------------------------- -----------------------CGCCTATCCCAAAACCTATAAGAACTAATGATAAG-- --------CCC---ACCACCCTTTGCTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GATGGCCT CTTCACACGGACGCGTGAGA--C------ >LTR7B_chr4_Sltr_1252__chr4_8363668883637152_+_ -ATCAGGCCTCTGAGCCCAGG-----------------------CTAAGCCATCATATCC CCTATGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTG---------------------------------------- ------------------------------------------------------------ ------------------------------------TAA--TCTCCCCCACCCTTAAGAA GGTTCTTTGTAATTTCCCCACCCCTAAAAATGTTCTTT----GTAAT----TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG CCTGCAAAACATTGCTCCTAACTCCAC--------------------------------- -----------------------CGCCTATCCCAAAACCTGTAAGAACTAATGATAAT-- --------CCC---ACCACTCTTTGCTGAGTCTCTTTTCGGACTCAGCCCGCCTGCATCC AGGTGG-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGCGGACT CTTCACACGGACGCGGGAGA--CA----- >LTR7B_chr8_Sltr_1619__chr8_1836202318362489_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC TCCATGAC---------------------------------------------CTGCATG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGACGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCAACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTG---------------------------------------- ------------------------------------------------------------ ------------------------------------TAA--TCTTCCCCACCCTTAAGAA GGTTCTTTGTAATCTCCCCACCCTTAAGAAGGTTCTTT----GTAAT----TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG CCTGCAAAACGTTGCTCCTAACTCTAC--------------------------------- -----------------------TGCCTATCCCAAAACCTGTAAGAATGAATGATAAT-- --------CCC---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGG-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGGCT CTTCACATGGACGCGGGAGA--CA----- >LTR7B_chr17_Sltr_608__chr17_71422117142701__ TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGGCATCACATCC CCTGTGAC---------------------------------------------CTGCACG TATACATCCAGG------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAAAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTGACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTGCTTTG---------------------------------------- ------------------------------------------------------------ ------------------------------------CAA--TCTCTCCCAACCTTAAGAA GGTTCTTTGTAATCTCCCCACCCTTAAGAAGGTTCTTT----GTAAT----TCTCCC--- -------------CA-CCCAT---------G----TATACTTTGTGAGATCCACTCCCTG CCTGCAAAACATTGCTCCTAACTCCAC--------------------------------- -----------------------CGCCTATCCCAACACCTGTAAGAGCTAGTGATAAT-- --------CCC---ACCACTCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACGC AGGTGA-----AA--TAAATAGCCTTGTTGCTCACACAAAGCCTG--TTC--GGTGGGCT CTTCACTCGGACGCACGTGA--C------ >LTR7B_chr14_Sltr_468__chr14_5313589853136326_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCT CCTGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TTACCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAA---AAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTAATTTGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTGCTTTG---------------------------------------- ------------------------------------------------------------ ------------------------------------TAA--TTTCCCCCACCCTTAAGAA GGTTCTTTGTAATC---------------------------------------TCCC--- -------------CA-CCCTT---------GAGAATGTACTTTATGAGATCCACCCCCTG CCCGCAAAACATTGCTCCTACCTCCAC--------------------------------- -----------------------CACCTATCCCAAAACCTGTAAGAACTAATGATAAT-- --------C-C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAACCTG--TTT--GGTGGTCT CTTCACACGGACGCATGAGA--CA----- >LTR7B_chr16_Sltr_553__chr16_3045455930455010__ TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATA--- -CCGTGAC---------------------------------------------CTGCACA TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTAACTGTT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTG---------------------------------------- ------------------------------------------------------------ ------------------------------------TAA--TCTCCCCCACCCTTAAGAA GGTACTTTGTAATCTCCCAACCCTTAAGAAGGTTCTTT----GTAAT----TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCC-TG CCCGCAAAACATGGCTCTT-----CAC--------------------------------- -----------------------CCCC-ATCCCAAAACCTGTAAGAACTAATGATAAT-- --------C-C---ACCACCCTTTGTTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTTT CTTCACATGGACGCGTGAGA--C------ >LTR7B_chr16_Sltr_555__chr16_3125223531252691__ TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCATG TATACATCCAGA------------------------------------------------ -----------------------------TGGCTTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGTCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTG---------------------------------------- ------------------------------------------------------------ ------------------------------------TAA--TCTCCCCCACCCTTAAGAA GGTACTTTGTAATCTCCCGACCCTTAAGAAGGTTCTTT----GTAAT----TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCC-TG CCCGCAAAACATGGCTTTT-----CAC--------------------------------- -----------------------CCCCTATCCCAAAACCTGTAGGAACTAATGATAAT-- --------C-C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACGAAGCCCG--TTT--GGTGGTCT CTTCACATGGACACGTGAGA--C------ >LTR7B_chr11_2ltr_int_fr_228__chr11_1864325418643683_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TCGCCTGAAGCAACTGACG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTG---------------------------------------- ------------------------------------------------------------ ------------------------------------TAA--TCT-CCCCACCCTTAAGAA GGT------------------------------TCTTT----GTAAT----TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCATCCGCTG CCCACAAAACAGTGTTCCTAACTCGAC--------------------------------- -----------------------TGCCTATCCCAAAACCTATGAGAACTAATGATAAT-- --------C-C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACCTGAACCC AGGTGA-----AA--TAA-CAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACACATGAAA--CA----- >LTR7B_chr16_Sltr_571__chr16_6689661666897052_+_ -GTCCGGCCTCTAAGCCCAAG-----------------------CTAAGCCATCATATCC CTTGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TCACCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAGAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTG---------------------------------------- ------------------------------------------------------------ ------------------------------------TAA--TCTGCCCCACCCTTAAGAA TGT------------------------------TCTTT----GTAAT----TCTCCC--- -------------CA-CCCTT---------GAGAAGGTACTTTGTGAGATCCACTCCCTG CCTGCCAAACGTTGCTCCTAACTCCAC--------------------------------- -----------------------CGCCTATCCCAAAACCTGTAAGAACTAATGATAAT-- --------C-C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACTTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACACGTGAGA--CA----- >LTR7B_chr9_Sltr_fr_1662__chr9_105285473105285881__ --------------------------------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TCACCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGACAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCACTGTAATTTGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTCTG---------------------------------------- ------------------------------------------------------------ ------------------------------------TAA--TCTTCCCCACCCTTAAAAA GGT------------------------------TCTTT----GTAAT----TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCACTG CCCGCAAAACGTTGCTCCTAATTCCAC--------------------------------- -----------------------CACCTATCCCAAAACCTATAAGAACTAATGATAAT-- --------C-T---ACCACCCTTTGCTGACTCT--TTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGCGTGAGA--C------ >LTR7B_chr17_Sltr_610__chr17_7472449974724930__ TGTCAGGCCTTTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------AGCCACAAAAGATGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATCAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTAACTGGT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTG---------------------------------------- ------------------------------------------------------------ ------------------------------------TCA--TCTCCCCTACCCTTAAGAA GGT------------------------------TCTTT----TCTAT----TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCA-TCCCTG CCCGCAAAACATTGCTCCTAACTCCAC--------------------------------- -----------------------TGCCTATCCCCAAACCTGTAAGAACCAATGATAAT-- --------C-C---ACTGCTCTTTGCTGACTCTCTTTTCGGATTCAGCCTGCCTGCACCC AGGTGA-----AA--TAAACAGCCACGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACACATGAGA--C------ >LTR7B_chr6_Sltr_1441__chr6_167029689167030151__ TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCAGTGTC---------------------------------------------CTGCACG TGTACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAATTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCTACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTG---------------------------------------- ------------------------------------------------------------ ------------------------------------TAA--TCTCCCCCACCCTTAAGAA GGT------------------------------TCTTT----ATAAT----CTCCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTAAGATCCAACCCCTT CCCTCAAAACATTGCTCTTAACTCCAC--------------------------------- -----------------------CACCTATCCCAAAACCTGTAAGAACTAATGATAAT-- --------C-C---ACAACCCTTTGCTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGACTG--TTT--GGTGGTCT CTTCAGACAGACACATGAGA--C------ >LTR7B_chr7_Sltr_1567__chr7_7086008170860512_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TCTACATCCAGA------------------------------------------------ -----------------------------TCTCCTAAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTTCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------ATACTTTG---------------------------------------- ------------------------------------------------------------ ------------------------------------TAA--TCTCCCCCACCCTTAAGAA GGT------------------------------TCTTT----GTAAT----TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCATCCCCTG CCCGCAAAACATTGCTCCTAACTCCAC--------------------------------- -----------------------TGCCTGTCCCAAAACCTATAAGAAGTAATGATAAC-- --------C-C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCAGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGATCT CTTCACACGGACTCGTGAGA--CA----- >LTR7B_chr7_Sltr_1568__chr7_7117444871174876__ TGTCAGGCCTCTGAGCCCACG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTACACG TCTACATCCAGA------------------------------------------------ -----------------------------TCGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAA---AGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GCACTTTG---------------------------------------- ------------------------------------------------------------ ------------------------------------TAA--TCTCCCCCACCCTTAAGAA GGT------------------------------TCTTT----GTAAT----TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCATCCCCTG CCCGCAAAACATTGCTCCTAACTCCAC--------------------------------- -----------------------CGCCCATCCCGAAACCTATAAGAATTAATGATAAC-- --------C-C---ACCACGCTTTGCTGACTCTCTTTTGGGACTCAGCCGGCCTGCACCC AGATGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--AGTGGTCT CTTCACACGGACACGTGAGA--C------ >LTR7B_chr11_2ltr_int_fr_244__chr11_3973412639734557_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCTTATCC CTTGTGAC---------------------------------------------CTGCATG TACACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCGTTGTAATTTGTTTCTGCCCAATC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTG---------------------------------------- ------------------------------------------------------------ ------------------------------------TAA--TCTCCCCCACCCTTAAAAA GGT------------------------------TCTTT----GTAAT----TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG CCCACAAAACATTGCTCCTAACTCCAC--------------------------------- -----------------------CGCCTATCCCAAAACCTATAAGAACTAATGATAAT-- --------C-C---ACCACCCTTTGCTGACTTTCTTTTTGGACTCAGCCTGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGTTCACATAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACATGTGAGA--CA----- >LTR7B_chr12_Sltr_351__chr12_4078540640785808__ TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCA-------- ------------------------------------------------------------ ------TCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTAATTTGTTTCTGCCCCATC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTG---------------------------------------- ------------------------------------------------------------ ------------------------------------TAA--TCTCCCCCACCCTTAAGAA GGT------------------------------TCTTT----GTAAT----TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCACTG CCCACAAAACATTGCTCCTAATTCCAC--------------------------------- -----------------------CACCTATCCCAAAACCTACAAGAACTAATGATAAT-- --------C-C---ACCACCCTTTGCTGACTTTCTTTTTGGACTCAGCCCGCCCGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGACAGGTGAGA--C------ >LTR7B_chr16_Sltr_546__chr16_2557131425571745__ TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGTGATCATATCC CCTGTGAC---------------------------------------------CTGCACA TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGCAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAT ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCACCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTG---------------------------------------- ------------------------------------------------------------ ------------------------------------TAA--TCTCCCCCACCCTTAAGAA GGT------------------------------TCTTT----GTAGT----TCTCCC--- -------------CA-CCATT---------GAGAATGTACTTTGTGAGATCCACCCGCTG CCCGCAAAACATTGCTCCTAACTCCAC--------------------------------- -----------------------CGCCTATCCCAAAATCTATAGGAACTAATGATAAT-- --------C-C---ACCACCCTTTGCTGACTCTCTTTTTGGACTCAGCTCACCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CCTCACATGGACATGTGAGA--C------ >LTR7B_chrY_Sltr_1889__chrY_2114730821147737_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATTATATTC CCTGTGAC---------------------------------------------ATGAACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCTGAAAACAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCATGATTGTGAA--GTTTCTACCCCACC CTAACCGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTG---------------------------------------- ------------------------------------------------------------ ------------------------------------TAA--TCTCCCCCACCATTAAGAA GGT------------------------------TCTTT----GTAAT----TCTCCC--- -------------GA-CCCCT---------GAGAATATACTTTGTGAGATCCACCCACTG CCCACAAAACATTTCTCCTAACTCCAC--------------------------------- -----------------------CGTCTATCCCAAAAGCTATAAGAACTAATGATAAT-- --------C-C---ACCACCCTTTGCTGACTCTCTTTTTGGACTCAGCTCACCTGCACCC TGGTGA-----AA--TAAACAGCC-TGTTGCTCACACAAAGCTTG--TTT--GGTGACCT CTTCACATGGATGTATGAGA--CA----- >LTR7B_chr11_Sltr_214__chr11_1155168611552117__ TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC TCTATGAC---------------------------------------------CT-CACG TATATATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCGCCATTGTGATTTGTTTCTGCCCAACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTG---------------------------------------- ------------------------------------------------------------ ------------------------------------TAA--TCTCCCCCACCCTTAAGAA GGT------------------------------TCTTT----GTAAT----TCTCCC--- -------------CA-CCCTG---------GAGAATGTACTTTGTGAGATCCACCCCCTG CTCGCAGAACATTGCTCCTAACTCCAC--------------------------------- -----------------------CGCCTATCCCAAAACCTATAAGAACTAATGATAAT-- --------C-C---ACCACCCTTTGCTGACTCTCTTTTTGGACTCAGCCCGCCTGCATCC TGGTGA-----AA--TAAACAGCCATGTTGCCCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGAAGCGTGAGA--C------ >LTR7B_chr15_Sltr_fr_497__chr15_3119887431199303_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CTTGTGAC---------------------------------------------CTGCACA TACATATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------AGCCACAAAAGAAGTGA-AATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCGC-ACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTG---------------------------------------- ------------------------------------------------------------ ------------------------------------TAA--TTTCCCCCACCCTTAAGAA GTT------------------------------TCTTT----GTAAT----TCTCCC--- -------------CA-CCCTT---------GAGAATTTACTTTGTGAGATCCACCCCTTG CTCACAAAACATTGCTCCTAACTCCAC--------------------------------- -----------------------CGCCTATCCCAAAACCTATAAGAACTAGTGACAAT-- --------C-C---ATCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCTCCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACGCAAAGCCTG--TTT--GCTGGTCT CTTCACATGGACACATGAGA--C------ >LTR7B_chr6_Sltr_1419__chr6_145358411145358842__ TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CTTATGAC---------------------------------------------CTGCACG TATATATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGTTGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTG---------------------------------------- ------------------------------------------------------------ ------------------------------------TAA--TCTCCCCCACCCTTAAGAA GAT------------------------------TCTTT----GTAAT----TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG CTCGCAAAACATTGCTCCTAACTCCAC--------------------------------- -----------------------CGCCTATCCCAAAACCTATAAGAACTAATGATAAT-- --------C-C---ACCACCCTTTGCTGACTCTCTTTTCAGACTCAGCCCCCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACGCAAAGCCTG--TTT--GGTGGTCT CTTCACAGGGACGTGTGAGA--C------ >LTR7B_chr1_Sltr_40__chr1_195719871195720303_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTAGGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG CATACATCCACA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC CTAACTGAT-------CAAC---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTATA---------------------------------------- ------------------------------------------------------------ ------------------------------------TAA--TCTCCCCCACCCTTAAGAA GAT------------------------------TCTTT----GTAAT----TCTCCC--- -------------CA-CCCTT---------GAGGATGTACTTTGTGAGATATACCCCCTG CCCGCAAAACATTGCTCCTAACTCCAC--------------------------------- -----------------------CGCCTATCCCAAAACCTATAAGAACTAATGATAAT-- --------C-C---ATCACTTTTTACTGACTCGCATTTTGGACTCAGCCTGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACAGGGACGTGTGAGA--CA----- >LTR7B_chrX_Sltr_1778__chrX_153682523153682989_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACA TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTAACTGAT--------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTG---------------------------------------- ------------------------------------------------------------ ------------------------------------TAA--TCTCCCCCACCCTTAAGAA AGT------------------------------TCTTT----GTAAT----TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCTCCTG CCCACAAAACATTGCTCCTAACTCCAG--------------------------------- -----------------------CGCCTATCCCAAAACCTATAAGAACTAATGATAAT-- --------C-C---ATCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC AGGTAA-----AA--TAAACAGCCTTGTTGCTCACACAGAGCCTG--TTT--GGTAGTCT CTTCACATGGACGTGTGAGA--CA----- >LTR7B_chr10_Sltr_181__chr10_4559082745591263_+_ -GTCAGGCC--TGAGCCCAAG-----------------------CTAAGCCAACATATCC CCTGTGAC---------------------------------------------CTGCACT TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGT-------------------------- ---------------------------------C----------TTAA----CTGATGAC GTT--------------------------------------------------------- -------------------------------CCACCATTGTGATTGGTTTCTGCCCCACC CTAACTGAT-------AAAC---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTG---------------------------------------- ------------------------------------------------------------ ------------------------------------TAA--TCTCCCCCACCCTTAAGAA GGT------------------------------TCTTT----GTAAT----TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGTTCCACCCCTTG CCCGCAAAACATTGCTCCTAACTCCAC--------------------------------- -----------------------CACCT------AAACCTATAAGAACTAATGATAAT-- --------C-C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGTCTGCCTGCACCC AGGTGA-----AA--CAGACAGCCTTGCTGCTCCCACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGCCTGAGA--CA----- >LTR7B_chr12_Sltr_302__chr12_124075022124075453_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGGGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCGTTGTGATTTGTTTCTGCCCCACC CTAACTGAT-------CAGC---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTG---------------------------------------- ------------------------------------------------------------ ------------------------------------TAA--TCTCCCCCACCCTTAAGAA GGT------------------------------TCTTT----ATAAT----TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG CCTGCAAAACATTGCTCCTAACTCCAC--------------------------------- -----------------------CACCTATCCCCAAACCTCTAAGAACTAGTGATAAT-- --------C-C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGTCTGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGCGTGAGA--CA----- >LTR7B_chr11_Sltr_231__chr11_23387692339200__ TGTCAGGCCTCTGGGCCCAAG-----------------------CTAAACCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCCGAAGCAACCAAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATCTGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTCTG---------------------------------------- ------------------------------------------------------------ ------------------------------------TAA--TCTCCCCAACCCTTAAGAA GGT------------------------------TCGTT----GTAAT----TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTCTGCGAGATCCACCCCCTG CTGGCAAAACATTGCTCCTAACCCAAC--------------------------------- -----------------------CGCCTACCCCAAAACCTGTAGGAACTAATGATAAT-- --------C-C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TACACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT TTTCACACGGACATGTGAGA--C------ >LTR7B_chr12_Sltr_374__chr12_7281700472817431__ TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTG-----TGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTTCTTTA---------------------------------------- ------------------------------------------------------------ ------------------------------------TAA--TCTCCCCAACCCTTAAGAA AGT------------------------------TCTTT----GTAAT----TCTCCC--- -------------CA-CCCTT---------AAGAATATACTTCATGAGATCTAACCCCTG CTGGCAAAACATTGCTCCTAACTCCAC--------------------------------- -----------------------TGCCTACCCCAAAACTTATAAGAACTAATGATAAT-- --------C-C---ACCACCCTTTGCTGACTCTCTTTTTGGACTCAGCCTGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTTCTCACACAGAGCCAG--TTT--GGTGGTCT CTTTACATGGATGTGTGAGA--C------ >LTR7B_chr6_Sltr_fr_1389__chr6_117657216117657960_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAAGTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGCTATTTGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTG---------------------------------------- ------------------------------------------------------------ ------------------------------------TAA--TCTCCCCCACCCTTAAGAA GGT------------------------------TCTTT----GTAAT----TCTCCC--- -------------AA-CCCTT---------GAGAATGTACTTTGCGAGATCCACCCCCTG CCTGCAAAACATTGCTCCTAACTCCAC--------------------------------- -----------------------TGCCTATCCCAAAACCTGTAAGAACTAATGATAAT-- --------C-C---ACCACCCTTTGCTGACTCTCTTTTTGGACTCAGCCCACATGCACCC AGGTGA-----AA--TAAATAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGATGTGTGAGA--CA----- >LTR7B_chr5_2ltr_int_fr_1382__chr5_9901652399016954__ TGTCAGGCCTCTGAACCCAAG-----------------------CTAAGTCATCATATCC CTTGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTG---------------------------------------- ------------------------------------------------------------ ------------------------------------TCA--TCTCCCCCACCCTTAAGAA GGT------------------------------TCTTT----GTAAT----TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG CCAGCAAAATATTGCTCCTAACTCTGC--------------------------------- -----------------------TGCCTATCCCAAAACCTATAGGAACTAATGATAAT-- --------C-C---ACCACCCTTTGCTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACACATGAGA--C------ >LTR7B_chr1_Sltr_31__chr1_1715132117151751__ TGTCAGGCCTCTGAGTCCAAG-----------------------CTAAGCTATCATATGC CCTGTGAC---------------------------------------------CTGCACG TGTACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ACACACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTG---------------------------------------- ------------------------------------------------------------ ------------------------------------TAA--TCTCCCCCACCCTTAAGAA GGT------------------------------TCTTT----GTAAT----TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCAACCCCTG CCTGCAAAACATTGCTCCTAACTCCAC--------------------------------- -----------------------TGCCTATCCCACAACTTATAAAAACTAATGATAAT-- --------C-C---ATCACCCTTTGCTGACT--CTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTA--TTT--GGTGGTCT CTTCACATGGACACATGAGA--C------ >LTR7B_chr7_2ltr_int_fr_1527__chr7_138329255138329687_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTGTGTCATTGTATCC CCTGTGAC---------------------------------------------CTGCACG TCTACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTG---------------------------------------- ------------------------------------------------------------ ------------------------------------TAA--TCTCCCCAACTCTTAAGAA GGT------------------------------TCTTT----GTAAT----TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCATCCCCTG CCTGCAAAACATTTCTCCTAACTCCAC--------------------------------- -----------------------CACCTATTCCAAAACCTATAAGAACTAATGATAAT-- -------CC-C---GCCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--CGTGGTCT TTTCACACGGACGCGTGAGA--CA----- >LTR7B_chr20_Sltr_932__chr20_4762261147623013__ TGTCAGGCCTCTGAGACCAAG--------------------------------------- -------C---------------------------------------------CTGCACA TATACATCCAGA------------------------------------------------ -----------------------------TGGTCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGA--TGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTG---------------------------------------- ------------------------------------------------------------ ------------------------------------TAA--TCTCCCCCACCCTTAAGAA GGT------------------------------TCTTT----GTAAT----TCTCCC--- -------------TA-CCCTT---------GAGAATGTACTTTGTGAGATCTAACCCC-G CCCGCAAAACATTGCTCCTAACT-CAC--------------------------------- -----------------------TGCCTATCCCAAAACCTATAAGAACTAATGATAAT-- -------CC-C---ACCACCCTTTGCTGACTCTCTTTTTGGACTCAGCCTGCCTGTACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGTCTG--------GTGGTCT CTTCACACGGACGCACGTGA--C------ >LTR7B_chr10_2ltr_int_fr_178__chr10_3540829435408752__ TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATTC CCAGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTAAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAAGAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAT ATT--------------------------------------------------------- -------------------------------CTACCATTGTGATTTGTTTCTGCCCTACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------ATACTTTGTAA-T----------------------------------- ------------------------CTCCCCCACCCTTAAG--------------AAGGTT CTT-------------------------------CATAA--TCTCCCCCACCCTTAAGAA GGT------------------------------TCTTT----GTAAT----TCTCCC--- -------------CG-CCCTT---------GAGAATG-----TGCGAGATCCACCCCCTG CCCCCAAAACATTGCTCTTAACTCCAC--------------------------------- -----------------------TGCCTATCCCAAAACCTGTAAGAACTAATGATAAT-- -------CC-C---ACCACCCTTTGCTGACTCTCTTTTCTGACTCAGCCTGCCGGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--TGTGGTCT CTTCACATGCACATGTGAGA--C------ >LTR7B_chr3_Sltr_999__chr3_128968890128969350_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCAGTGAC---------------------------------------------CTGCATG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTAACT-AT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAA-T----------------------------------- ------------------------CTCCCCCACACTTAAG--------------AAGGTT CTT-------------------------------TATAA--TCTCCCCCACCCTTAAGAA GGT------------------------------TTTTT----GTAAT----TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG CCCCCAAAACATTGCTCTTAACTCCAC--------------------------------- -----------------------TGCCTATCCCAAAACCTGTAAGAACTAATGATAAT-- -------CC-C---ACCACCCTTTGCTGACTCTCTTTTCAGACTCAGCCTGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTACTTACACAAAGCCTG--TT-----TGGTCT CTTCACACGGACATGTAAGA--CA----- >LTR7B_chr1_Sltr_25__chr1_162316530162316961__ TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCAGTGAC---------------------------------------------CTGCACA TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAAC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGCTTCTGCCC-ACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAA-T----------------------------------- ------------------------CTCCCCCA---------------------------- --------------------------------------------------CCTTTAAGAA GGT------------------------------TCTTT----GTAAT----TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG CCCCTAAAACATTGCTCTTAACTCCAC--------------------------------- -----------------------TGCCTATCCCAAAACCTCTAAGAACTAATGATAAT-- -------CC-C---ACCACCCTTTGCTGACTCTCTTTTGGGACTCAGTCTGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGGGGTCT CTTCACATGGACATGTAAGA--C------ >LTR7B_chr11_2ltr_int_fr_227__chr11_1452426114524693_+_ -GTCAGGCCTCTGAGCTCAAG-----------------------CTAAGCCATCATATCC CCAGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATTCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGACGAA GTT--------------------------------------------------------- -------------------------------CCACCAT--TGATTTATTTCTGCCCCAAC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAA-T----------------------------------- ------------------------CTCCCCC----------------------------- -------------------------------------------------ACCCTTAAGAA GGT------------------------------TCTTT----GTAAT----TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG CCCCCAAAACATTGCTCTTAACTCCAC--------------------------------- -----------------------TGCCTATCCCAAAACCTCTAAGAACTAATGATAAT-- -------CC-----ACCACCCGTTGCTGACTCTCTTTTTGGACTCAGCCCGTCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTAGTCT CTTCACACGGACACGTAAGA--CA----- >LTR7B_chr13_Sltr_405__chr13_4141011341410558__ TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAACCATCATATCC CCAGTGAC---------------------------------------------CTGCAAG TATACATGCACA------------------------------------------------ -----------------------------TGACCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ACCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTAACTGAT-------CAGT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAA-T----------------------------------- ------------------------CTCCCCCACCC------------------------- --------------------------------------A--TCTCCACTACCCTTAAGAA GGT------------------------------TCTTT----GTGAT----TCTCTC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG CCCCCAAAACATTGCTCTTAACTCCAC--------------------------------- -----------------------CGCCTATTCCAAAACCTGTAAGAACTAATGAGAAT-- -------CC-C---ACCACCCTTTGCTGACTCTCTTTTTGGACTCAGCCTGACTACACCC AGGTGA-----AA--TAAGCAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACATGTGAGA--C------ >LTR7B_chr17_Sltr_616__chr17_8015328080153743_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCACCATATCC CCAGGGAC---------------------------------------------CTGCACA TGTACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACCGAAG------------ ------------------------------------------------------------ ----------ATACACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACA CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAA-T----------------------------------- ------------------------CTCCCCTACCCTTAAG--------------AAGTTT CTT-------------------------------TATAA--TCTCCCACACCCTTAAGAA GGT------------------------------TCTTT----GTAAT----TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCTCCCCCTG CCCCCAAAACATTGCTCTTAACTCCAC--------------------------------- -----------------------CGCCTATCCCAAAACCTATAAGAACTAATGATAAT-- -------CC-C---ACCAC-CTTTGCTGACTCTCTTTTTGGACTCAGCCTGCCTGCACCC AGGTGA-----AA--TAAGCAGCCGTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACAAGGACACGTGAGA--CA----- >LTR7B_chr11_2ltr_int_fr_284__chr11_9502459995025062__ TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCAGTGAC---------------------------------------------CTGCACA TACACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAA-T----------------------------------- ------------------------CTCCCCCACCCTTACG--------------AAGTTT CTT-------------------------------TATAA--TCTCCCCCACCCTTAAGAA GTT------------------------------TCTTT----GTAAT----TCCCCC--- -------------CA-CCCTC---------GAGAATGTACTTTGTGAGATCCACCCCCTG CCCCCAAAACATTGCTCTTAACTCCAC--------------------------------- -----------------------CACCTATCCCAAAACCTGTAAGAACTAATGATAAT-- -------CC-C---ACCACCCTTTGCTGACTCTCTTTTTGGACTTAGCCCGCCTGCACCC AGGAGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTC--TTT--GGGGGTCT CTTGACACGGACACGTGAGA--C------ >LTR7B_chrX_2ltr_int_fr_1756__chrX_117417846117418308_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCAGTGAC---------------------------------------------CTGCAGG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGT-ATTTGTTTCTGCCCCACT CTAACTGAC-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAA-T----------------------------------- ------------------------CTCCCCCACCCTTAAG--------------AAGGTT CTT-------------------------------TATAA--TCTCCCCCACCCTTAAGAA GGT------------------------------TCTTT----GTAAT----TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG CCCCCAAAACATTGCTCTTAACTCCAC--------------------------------- -----------------------CATCTATCCCAAAACTTATAAGAACTAATGATAAT-- -------CC-C---ATCACCCTTTGCTGACTCTCTTTTTGGACTCAGCCCACATGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGTGTG--TTT--GGTGGTCT CTTCATACGGACATGTGAGG--CA----- >LTR7B_chrY_Sltr_1890__chrY_2195161121952074__ TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CTTGTGAC---------------------------------------------CTGCACG TGTACATCCAGA------------------------------------------------ -----------------------------TGGCCTGTAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCTACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGAGTTGTTTCTGCCCTACT CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTAATTTGTAA-T----------------------------------- ------------------------CTCCCCCACCCTTAAG--------------AAGGTT CTT-------------------------------TATAA--TCTCCCTCACCCTTAAGAA GGT------------------------------TCTTT----GTTAT----TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG TCCCCAAAACATTGCTCTTAATTCCAC--------------------------------- -----------------------TGCCTATCCCAAAACATATAAGAACCAATGATAAT-- -------CC-C---ACCACCCTTTGCTGACTCTCTTTTTGGACTCAGCCTGCCTGCCACC AGCTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGGGGTCT CTTCACACGGACACGTGAGA--C------ >LTR7B_chrY_Sltr_1891__chrY_2263431622634779_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CTTGTGAC---------------------------------------------CTGCACG TGTACATCCAGA------------------------------------------------ -----------------------------TGGCCTGTAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCTACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGAGTTGTTTCTGCCCTACT CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTAATTTGTAA-T----------------------------------- ------------------------CTCCCCCACCCTTAAG--------------AAGGTT CTT-------------------------------TATAA--TCTCCCTCACCCTTAAGAA GGT------------------------------TCTTT----GTTAT----TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG TCCCCAAAACATTGCTCTTAATTCCAC--------------------------------- -----------------------TGCCTATCCCAAAACATATAAGAACCAATGATAAT-- -------CC-C---ACCACCCTTTGCTGACTCTCTTTTTGGACTCAGCCTGCCTGCCACC AGCTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGGGGTCT CTTCACACGGACACGTGAGA--CA----- >LTR7B_chrY_Sltr_1892__chrY_2356141023561873__ TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CTTGTGAC---------------------------------------------CTGCACG TGTACATCCAGA------------------------------------------------ -----------------------------TGGCCTGTAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCTACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGAGTTGTTTCTGCCCCACT CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTAATTTGTAA-T----------------------------------- ------------------------CTCCCCCACCCTTAAG--------------AAGGTT CTT-------------------------------TATAA--TCTCCCTCACCCTTAAGAA GGT------------------------------TCTTT----GTTAT----TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG TCCCCAAAACATTGCTCTTAACTCCAC--------------------------------- -----------------------TGCCTATCCCAAAACATATAAGAACCAATGATAAT-- -------CC-C---ACCACCCTTTGCTGACTCTCTTTTTGGACTCAGCCTGCCTGCCACC AGCTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGGGGTCT CTTCACACGGACACGTGAGA--C------ >LTR7B_chrY_Sltr_1893__chrY_2610874426109207_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CTTGTGAC---------------------------------------------CTGCACG TGTACATCCAGA------------------------------------------------ -----------------------------TGGCCTGTAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCTACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGAGTTGTTTCTGCCCCACT CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTAATTTGTAA-T----------------------------------- ------------------------CTCCCCCACCCTTAAG--------------AAGGTT CTT-------------------------------TATAA--TCTCCCTCACCCTTAAGAA GGT------------------------------TCTTT----GTTAT----TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG TCCCCAAAACATTGCTCTTAACTCCAC--------------------------------- -----------------------TGCCTATCCCAAAACATATAAGAACCAATGATAAT-- -------CC-C---ACCACCCTTTGCTGACTCTCTTTTTGGACTCAGCCTGCCTGCCACC AGCTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGGGGTCT CTTCACACGGACACGTGAGA--CA----- >LTR7B_chr18_2ltr_int_fr_627__chr18_3200048332000946_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCAGTGAA---------------------------------------------CTGCACA TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACTATTGTGATTGGTTTCTGCCCCACC TTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAA-T----------------------------------- ------------------------CTCCCTCACCCTTAAG--------------AAGGTT CTT-------------------------------TATAA--TCTCTCCCACCCTTAAGAA GGT------------------------------TCTTT----GTAAT----TCTCCC--- -------------CG-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG CCCCCAAAACATTGCTCTTAATTCCAC--------------------------------- -----------------------CGCCTATCCCAAAACCTATAAGAACTAATGATAAT-- -------CC-C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCAGCCTGCACCC AGGTAA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACACGTGAGA--CA----- >LTR7B_chr1_Sltr_126__chr1_6513726165137680_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAG----------- CCTGTGAC---------------------------------------------CTGCGTG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAG---TGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCATCATCGTGATTTGTTTCTGACCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAA-T----------------------------------- ------------------------CTTCCCCA---------------------------- --------------------------------------------------CCCTTAAGAA GGT------------------------------TCTTT----ATAAT----TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACTCCCTG CCCGCAAAACATTGCTCCAAACTCCAC--------------------------------- -----------------------CGCCTATCCCAAAACCTGTAAGAACTAATGATAAT-- --------C-C---ACCACACTTCGCTGACTCTCTTTTCAGACTCAGCCCGCCCGCACCC AGGTGA-----AA--TAAACAGCCATGT-GCTCACACAAGCCCTA--TTT--GGTGGTCT CTTCACACGGGCACGTGAGA--CA----- >LTR7B_chr17_Sltr_fr_606__chr17_6742481567425185_+_ -GTCAGGCCTCTCAGCCCAAG-----------------------CTAAG----------- CATGTGAC---------------------------------------------CTTCGTG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAG---TGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCATCATTGTGATTTGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAA-T----------------------------------- ------------------------CTTCCCCA---------------------------- --------------------------------------------------CCCTTAAGAA GTT------------------------------TCTTT----ATAAT----TCTCCC--- -------------CA-CCCTT---------AAGAATGTACTTTGTGAGATCCACCCCCTG CCTGCAAAACATTCCTCCAAATTCCAC--------------------------------- -----------------------CGCCTATCCCAAAACCTGTAAGAACTAATGATAAT-- --------C-C---ACCACACTTCGCTGACTCT--TTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGT---------------------T--G------- ----------------------------- >LTR7B_chr16_Sltr_534__chr16_1540930215409727_+_ -GTCCGTCCTCTGAGCTCAAG-----------------------CTAAGCCATCATATC- CCAGTGAC---------------------------------------------CTGCACA TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTTACTGAAG------------ ------------------------------------------------------------ ----------ATCCAC--AAG---TGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------GCACCATTGTGATATGTTACTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAA-T----------------------------------- ------------------------CTCCC--A---------------------------- --------------------------------------------------CCCTTAAGAA GGT------------------------------TCTTT----TTAAT----TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCA-CCCCTG CCCGCAAAACATTGCTCCAAACTCCAC--------------------------------- -----------------------CACCTATCCCCAAACCTGTAAGAACTAATGATAAT-- --------C-C---ACCACCCTTTGCTGACTCCTTTTTTGGACTCAGCCCGCCTGCACTC AGGTGA-----AA--TAAACAGCCATGTTGCTCATACAAAGCCTG--TTT--GGTGGCCT CTTCACACGGACACGTGAGA--CA----- >LTR7B_chr3_Sltr_1087__chr3_42050154205444_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCACCATATCC CCAGTGAC---------------------------------------------CTGCACA TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCAC--AAG---TGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTACTGCCCCAC- CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGCAA-T----------------------------------- ------------------------CTCCCCAA---------------------------- --------------------------------------------------CCCTTAAGAA GGT------------------------------TCTTT----GTAAT----TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG CCCGCAAAACATTGCTCCAAACTCCAC--------------------------------- -----------------------CACCTATCCCCAAACCTATAAGAACTAATGATAAT-- --------C-C---ACCACCTTTTGCTGACTGTCTTTTTGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCTTG--TCT--GGTGGTCT CTTCACACGGACACATGAGA--CA----- >LTR7B_chr2_Sltr_844__chr2_233213615233214043__ TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCGTATCC CCAGTGAC---------------------------------------------CTGCATG TATACATCCAGA------------------------------------------------ -----------------------------TGACCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCAC--AAG---TGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTACTGCCCCACC CTAACTGAT-------CACT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTCTGTAA-T----------------------------------- ------------------------CTCCCCGA---------------------------- --------------------------------------------------CCCTTAAGAA GGT------------------------------TCTTT----GTAAT----TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCTCTG CCTGCAAACCATTGCTCCAAACTCCAC--------------------------------- -----------------------CACCTATCCCAAAACCTCTAAGAACTAATGATAAT-- --------C-C---ACCACCCTTTGCTGACTCCTTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAATGGCCATGTTGCTAACACAAAGCCTG--TTT--GGTGGTCT TTTCACACGGACACGTGAAA--C------ >LTR7B_chr15_Sltr_515__chr15_6241854762418978__ TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCAGTGAC---------------------------------------------CTGCATA TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCAC-AAAG---TGAAAATAGT-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGCTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAA-T----------------------------------- ------------------------CTCCCCCA---------------------------- --------------------------------------------------CCCTTAAGAA GGT------------------------------TCTTT----ATCAT----TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCAGCCCCTG CCAGCAAAACATTGCTCCAAACTCCAG--------------------------------- -----------------------CGCCTATCTCAAAACCTATAAGAACTAATGATAAT-- --------C-C---ACCACCTTTTACTGACTCTCTTTTCTGACTCATCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGTTCT CTTCATACGGACACGTGAGA--C------ >LTR7B_chr15_Sltr_513__chr15_5732575957326198__ TGTCAGGCCTCTGAGCCCAAG-----------------------CTGAGCCATCATATCC CCTGTGAC---------------------------------------------TGGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTAAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAG---TGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ACT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAA-T----------------------------------- ------------------------CTCCCCCA---------------------------- --------------------------------------------------CCCTGAAGAA GGT------------------------------TCTTT----GCAAT----TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCAGCCCCTG CCAGCAAAACATCGCTCCAAACTCCAC--------------------------------- -----------------------CGCCTATCCCAAAACCTGTAAGAACTAATGATAAT-- --------C-C---ACCACCCTTTGCTGGCTTTCTTTTAGGACTCAGCCC-CCTGCGCCC AGGTGA-----AA--TAAACAGGCTTGTTGCTCACACAAAGCCTG--CTT--GGTGGTCT CTTCACATGGACACGTGAAA--C------ >LTR7B_chr15_Sltr_514__chr15_5844367558444104__ TGTCAGGCCTCTGAGCCCAAG-----------------------CTGAGCCATCGTAGCC CCTGTGAC---------------------------------------------TGGCACG TATACACCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAG---TGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ACT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAA-T----------------------------------- ------------------------CTCCCCCA---------------------------- --------------------------------------------------CCCTGAAGAA GGT------------------------------TCTTT----GCAAT----TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG CCCGCAAAACATTGCTCCAAACTCCAC--------------------------------- -----------------------CGCCTATCCCAAAACCTGTAAGAACTAACGATAAT-- --------C-C---ACCACCCTTTGCTGACTCCTTTTTCAGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--CTT--GGTGGTCT CTTCACATG----CGTGAGA--C------ >LTR7B_chr2_Sltr_768__chr2_127812658127813086_+_ -GTCAGGCCTCAGAGCCCAAG-----------------------CTAAGCCATCATATCC CCAGTGAC---------------------------------------------TTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAG---TGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTAATTTGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAA-T----------------------------------- ------------------------TTCCCCGA---------------------------- --------------------------------------------------CCCTTAAGAA GGT------------------------------TCTTT----ATAAT----TCTCCC--- --------------A-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG CCCACAAAACATTGCTCCAAACTCCAA--------------------------------- -----------------------TGCCTATCCCAAAACCTGTAAGAACTAATGATAAT-- -------CC-C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACACGTGAGA--CA----- >LTR7B_chr6_Sltr_fr_1456__chr6_35475193547948_+_ --TCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCAGTTAC---------------------------------------------CTGCACA TATACACCCAGA------------------------------------------------ -----------------------------TGGCCCGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAGAAG---TGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CGGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTGGCTTCTGCCCCACC CTAAGTGAC-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAA-T----------------------------------- ------------------------CTCCCCCA---------------------------- --------------------------------------------------CTCTTAAGAA GTT------------------------------TCTTG----GTAAT----TCTCCC--- -------------CA-CTCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG CCCCCAAAACATTGCTCCTGACTCCAC--------------------------------- -----------------------CGCCTATCCCAAAACCTGTAAGAACCAATGATAAT-- -------CC-C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCATACGGACACGTGAGA--CA----- >LTR7B_chr15_2ltr_int_fr_504__chr15_4288475942885185_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAG----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTC--------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ --------------------------CCCCCACCCTTAAT--------------AAGGTT CTT-------------------------------TGTAA--TCTCCCCCACGCTTAAGAA CAT------------------------------TCTTT----GTAAT----TCTTCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCTATCCCCCG CCCACAAAACATTGCTCCTAACTCCAC--------------------------------- -----------------------CACCTATCCCAAAACCTATAAGAACTAATGATAAT-- -------CC-C---ACCACCCT-TGCTGACTCTCTTTTCGGGCTCAGCCCACCTGCACCT AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGGCTG--TTT--GGTGGTCT CTTCACACAGACACGTGAGA--CA----- >LTR7B_chr19_Sltr_fr_658__chr19_1958554519585977_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CTTGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCCACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTAATTTGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAA-T----------------------------------- ------------------------CTCCCCCACCCTTAAG--------------AAGGTT CTT-------------------------------TGTAA--TTCTTTCCACCCTTGAGAA ------------------------------------------------------------ -----------------------------------TGTACTTTGTGAGATCCACCCCCTG CCCAAAAAACATTACTCCTAACTTCAC--------------------------------- -----------------------CGCCTATCCCAAAACCTATAAGAACTAATGATAAT-- -------CC-C---ACCACCCT-TGCTGACTCTCTTTTTGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACAGAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGTGAGA--------- >LTR7B_chrX_Sltr_1773__chrX_142431150142431610_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTCCATG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCGACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCGTTGTGATTTGTTTCTGCCTCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGGTA-T----------------------------------- ------------------------CTCCCCCACCCTTAAG--------------AAGGTT CTT-------------------------------TGTAA--TCCCCCCCACCCTTGAGAA GGT------------------------------TCTTT----GTAAT----TCTCCT--- -------------CA-CCCTT---------GAGAATGCACTTTGTGAGATCCATCCCCTA CCCACAAAACATTGCTCCTAACTTCGC--------------------------------- -----------------------CGCCTGTCCCAAAACCTGTAAGAACTAGTGATAAT-- -------CC-C---ACCACGCT-TGCTGACTC--TTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTAACACAAAGCCTG--TTT--GATGGTCT CTTCACACGGGCGCGTGAGA--CA----- >LTR7B_chr14_Sltr_450__chr14_3248983232490295__ TGTCAGGCCTCTGAGCCCGAG-----------------------CTAAGCCATCATATCC TCTGTGAC---------------------------------------------CTGCACA TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTG-TTCTGCCCTATC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTTA-C----------------------------------- ------------------------CTCCCTCACCCTTAAG--------------AAGGTT CTT-------------------------------TGTAA--TCTCCCCCACCCTTAAGAA GGT------------------------------TCTCT----GTAAC----TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG TCCGAAAAACATTGCTCCTAACTCCAC--------------------------------- -----------------------TGCCTATCCCAAAACCTATAAGAACTAATGATAAT-- -------CC-C---ACCACCCTTTGCTGACTCTCTTTTCAGACTTAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACACGTGAGA--C------ >LTR7B_chr3_Sltr_1086__chr3_4196458441965016_+_ -GTCAGGCCTCTGAGCCTAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCATGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGATGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTACCTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------TTA--------------------------------------------- ------------------------------------------------------------ CTT-------------------------------TGTAA--TCTCCCCCACCCTTAAGAA GGT------------------------------TCTTT----GTAAT----TCTCCC--- -------------CA-CCCTT---------GAAAATGTACTTTGTGAGATCCATCCTCTG CCCGCAAAACATTGTTCCTGACTCCAC--------------------------------- -----------------------CGCCTATCCCAAAACCTATAAGAACTGACGATAAT-- -------CC-C---ACCACCC-CTGCTGACTCTCTTTTCAAACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACGAAGCCTG--TTT--GGTGGTCT CTTCACACGGACACGTGAGA--CA----- >LTR7B_chr20_2ltr_int_fr_927__chr20_4467022944670691_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCGTCATATCC CCTGTGAC---------------------------------------------CTGCATG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC CTT--------------------------------------------------------- -------------------------------TCACCATTGTGATTTGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------------------------------------------- ------------------------------------------------------------ CTT-------------------------------TGTAA--TCTCCCCCACCCTTAAGAA AGT------------------------------TCTTT----GTAAT----TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCGCTG CCCACAAAACATTGCTCCTAACTCCAC--------------------------------- -----------------------TGCCTATCCCAAAACCTGTAAGAACTAATGATAAT-- -------CC-C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCATCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGATGCGTGTGA--CA----- >LTR7B_chr3_Sltr_1100__chr3_5845035758450756_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC TCTGTGAC---------------------------------------------CTGCATG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAA------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCT-------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ --------------------------------------------CCCCCACCCTTAAGAA GGT------------------------------TCTTT----GTAAT----TTCCCC--- -------------CA-CCCTT---------AAGAATGTACTTTGTGAGATCCACCCCCTG CCCACAAAACATTGCTCCTAACTCCAC--------------------------------- -----------------------CGCCTATCCCAAAACCTATTAGAACTAATGATAAT-- -------CC-C---ACCACCCTTTGCTAACTGTCTTTTCAGACTCAGCCCGTCTGCACCC AGGTGA-----AA--TAAATAGCCTTGTTGCTCACACAACGCCTG--TTT--GGTGGTCT CTTCACACAGATGCGTGAGA--CA----- >LTR7B_chr10_Sltr_170__chr10_1859796518598392_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATAATATCC CCTGTGAC---------------------------------------------CCGAATG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAATTAGC-------------------------- ---------------------------------T----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACT CTC----AT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------------------------------------------- ------------------------------------------------------------ CCT-------------------------------TGTAA--TCTCCCCCACCCTTAAGAA GGT------------------------------TCTTT----GTAAT----TCTCCC--- -------------CA-TCCTT---------GAGAATGTACTTTGTGAGATCCACC-CCTG CCCGCAAAACATTGCTCCTAACTCCAC--------------------------------- -----------------------CGCCTATCCCAAAACATGTAAGAACTAATGATAAT-- -------CC-C---ATCACCCTTTGCTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGCTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACACGTGAGA--CA----- >LTR7B_chr7_Sltr_1512__chr7_11610081161440__ TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCAGTGAC---------------------------------------------CTGCATG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAACAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCCTTGTAATTTGTTTCTGCCCCATC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------------------------------------------- ------------------------------------------------------------ CTT-------------------------------TGTAA--TCTCCTCTACCCTTAAGAA GGT------------------------------TCTTT----GTAAT----TCTCCC--- -------------CA-CCCTT---------GAGAATGTACCTTATGAGATCCACCACCTG CCTGCAAAACATTGCTCCTAACTCCAC--------------------------------- -----------------------CGTCTATCCCAAAACCTGTAAGAACTAATGATAAT-- -------CC-C---ATCGCCCTTTGCTGACTCTCTTTTCCGACTCAGCCGGGCTGCACCC GGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGACATGTGAGA--C------ >LTR7B_chr2_Sltr_848__chr2_237850512237850942__ TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATTC CCAGTGAC---------------------------------------------CTGTACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC GTT--------------------------------------------------------- -------------------------------CCAGCATTGTGATTTATTTCTGCCCCAAG CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------------------------------------------- ------------------------------------------------------------ CTT-------------------------------TGTAA--TCTCCCCCACCTTTAAGAA GGT------------------------------TCTTT----GTAAT----TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCACCTG CCCACAAAACATTGCTCTTAACTCCAC--------------------------------- -----------------------CACCTATCCCAAAACCT-TAAGAACTAATGATAAT-- --------C-C---ACCACACTTTGCTGACTCTCTTTTCAGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTA--TTT--GGTGGCCT CTTCACACGGACACGTGAGA--C------ >LTR7B_chr9_Sltr_1674__chr9_124143029124143461_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TAGACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAACAAGTGAAAACAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CTGCCATTGTGATTTCTTTCTGCCCCAAC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------------------------------------------- ------------------------------------------------------------ CTT-------------------------------TGTAA--TCTCCCCCACCCTTTAGAA GGT------------------------------TCTTT----GTGAT----TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG CCCACAAAACATTGCTCCTAACTCCAC--------------------------------- -----------------------CGCCTATCCCAAAACCTGTAAGAACTAATGATAAT-- -------CC-C---ACCACACTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAATAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACACGTGAGA--CA----- >LTR7B_chr1_Sltr_fr_93__chr1_2858601528586441_+_ ---CAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC ACTGTGAC---------------------------------------------CTGCACA TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCC-CACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAA-T----------------------------------- ------------------------CTCCCCTATGCTTAAG--------------AAGGTT CTT-------------------------------TGTAA--TTCTCCCCACCC------- ------------------------------------------------------------ -------------------TC---------AAGAATGTACTTTGTGAGATCCACCCCCTG CCCAGAAAACATTGCTCCAAACT---C--------------------------------- -----------------------CAGCTATCCCAAAACCTGTAAGAACTAATGATAAT-- -------CC-C---ACCACACTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGTCTG--TTT--GGTGGTCT CTTCACACAGACGCATGTGA--CA----- >LTR7B_chr9_Sltr_fr_1723__chr9_8833225088332991__ TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCAGA TATGC-TCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCTACACTGTGATTTGTTCCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAA-T----------------------------------- ------------------------CTCCCCCACCCTTAAG--------------AAGGTT CTT-------------------------------TGTAA--TTCTCCCCACCC------- ------------------------------------------------------------ -------------------TT---------GAGAATGTACTTTGTGAGATCCACCCCCTG CCCACAAAACATTGCTCCTAACCCCAC--------------------------------- -----------------------CACCTATCCCAAAACCTATAAGAACTAATGATAAT-- -------CC-C---ACCACCCTTTGCTGACTCTCCTTTCGGACTCAGCCCGTCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTACTCACACAAAGCCTG--TTT--GGTGGTGT CTTCACCCGGACGCATGTGA--C------ >LTR7B_chr12_Sltr_fr_291__chr12_104271048104271791__ TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAACCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTGACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAA-T----------------------------------- ------------------------CTCCCTGACCCTTAAG--------------AAG--- ------------------------------------------------------------ -GT------------------------------TCTTT----GTAAT------------- ------------------------------GAGAATGTACTTTGTGAGATCCATCCCCTG CCCACAAAACATTGCTCCTAACTCCAC--------------------------------- -----------------------CGCCTATCCCAAAACCTATAAGAACTAATGATAAT-- -------CC-C---ACCACCCTTTGCTGACTCTCTTTTCTGACTCAGCCTGCCTGCACCC AGGTGA-----AA--TAAACAGGCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT TTTCACACGGATGCACGTG---------- >LTR7B_chr2_Sltr_823__chr2_205938010205938473__ TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------CTCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTGA-T----------------------------------- ------------------------CTCCCCCACCCTTAAG--------------AAG--- ------------------------------------------------------------ -GT------------------------------TCTTT----ATAAT----TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG CCCACAAAACATTGCTCCTAACTCCAC--------------------------------- -----------------------CGCCTATCCCAAAACCTATAAGAACTAATGATAAT-- -------CC-C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGATGCACGTG---------- >LTR7B_chr16_Sltr_579__chr16_7570550775705970__ TGTCAGTCCTCTGAGCCCGAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCAAG TATACCTCCAGA------------------------------------------------ -----------------------------TGGCCTGGAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAAC-------------------------- ---------------------------------C----------TTAA----CTGATGAT ATT--------------------------------------------------------- -------------------------------CCACCCTTGTGATTTGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAA-T----------------------------------- ------------------------CTCTCCCACCCTTAAG--------------AAG--- ------------------------------------------------------------ -GT------------------------------TCTTT----GTAAT----TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTGGTGAGATCCACCCCCTG CCCACAAAACATTGCTCCTAACTCCAC--------------------------------- -----------------------CACCTATCCCAAAACCTATAAGAACTAATGATAAT-- -------CC-C---ACCACCCTTTGCTGACTCTCTTTTTGGACTCAGCCTGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGATGTGCGTGA--C------ >LTR7B_chrX_Sltr_1847__chrX_9429042594290875_+_ -GACAGTCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC C--GTGAT---------------------------------------------CTGCCCG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAT ATT--------------------------------------------------------- -------------------------------CCACTATTGTGATTTATTTCTGC------ -----TGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAA-T----------------------------------- ------------------------CTCCCCCACCCTTAAG--------------AAG--- ------------------------------------------------------------ -TT------------------------------TCTTT----GTAAT----TCTCCC--- -------------CA-CCTTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG CCCACAAAACATTGCTCCTAACTCCAC--------------------------------- -----------------------CAACTATCCCAAAACCTATAAGAACTAATGATAAT-- -------CC-C---ACCACCCTTTGCTGACTCTCTTTTCAGACTCAGCCCGCCTGAACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCTTG--TTT--GGTGGTTT CTTCACACGGACGTGCGTGA--CA----- >LTR7B_chr9_Sltr_1697__chr9_3512076035121190_+_ -GTCAGGC--CTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCAAG TATACATCCAGA------------------------------------------------ -----------------------------TCACCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAACAAGCGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTCGTAA-T----------------------------------- ------------------------CTCCCCCACCCTTAAG--------------AAG--- ------------------------------------------------------------ -GT------------------------------TCTTT----GTAAT-----CTCCC--- -------------CA-CCCTT---------GAGAATGTATTTTGTGAAATCCACCCTCTG CCCACAAAACATTGCTCCTAACTCCAC--------------------------------- -----------------------CACCTATCGCAAAACCTATAAGAACTAATGATAAT-- -------CC-C---ACCACCCTTTGCTGACTCCTTTTTTGGACTCAGCCTGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT TTTCACACGGATGTGTGAGA--CA----- >LTR7B_chr8_Sltr_fr_1585__chr8_101162538101162958_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCGTCATATCC CCTGTGAC---------------------------------------------CTGCATG TATACATCCAGA------------------------------------------------ -----------------------------TCACCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCAC---AGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CT------ ATT--------------------------------------------------------- -------------------------------CCACCATTGTAATTCGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAA-T----------------------------------- ------------------------CTCTCCCATCCTTAAG--------------AAG--- ------------------------------------------------------------ -GT------------------------------TCTTT----GTAAT----TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG CCCACAAAACATTGCTCCTAACTCCAC--------------------------------- -----------------------CGCCTATCCCAAAACCTGTAAGAACTAATGACAAT-- -------CC-----ACCACCCTTTGCTGACTCTCTTTTTGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCACGTGA--------- >LTR7B_chr19_Sltr_685__chr19_3743458637435014_+_ -GTCAAGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC C--GTGAC---------------------------------------------CTGCATG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTAAAGCAATTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGACGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAA-T----------------------------------- ------------------------CTCCCCTACTCTTAAG--------------AAG--- ------------------------------------------------------------ -GT------------------------------TCTTT----GTAAT----TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAAATCCACCCCCTG CCCGCAAAACATTGCTCCTAACTCCAC--------------------------------- -----------------------CACCTATCCCAAAACTTACAAGAACTAATGATAAT-- -------CC-C---ACCACCCTTTGCTGACTC--TTTTTGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGCTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGTGCGCGTGTGA--CA----- >LTR7B_chr5_Sltr_1350__chr5_2805183828052299_+_ -GTCAGGCCTCTAAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCATG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCAGCATTGTGATTTGTTTCTGCCCCACT CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAA-T----------------------------------- ------------------------TTCTCCCACCCTTAAG--------------AAGATT CTT-------------------------------TGTAA--TCTCCCCCACCCTAAAGAA GGT------------------------------TCTTT----GTAAT----TCTTCC--- -------------CA-CCCTC---------GAGAATGTACTTTGTGAGATCCA-CCCCTG TCCGCAAAACATAGCTCCTAACTCCAC--------------------------------- -----------------------CACCTCTCCCAAAACCTATGGTAGCTAATGATTAT-- -------CC-C---ACCACACT-TGTTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GATGGTCT CTTCACACGGACGCATGAGA--CA----- >LTR7B_chr19_Sltr_687__chr19_4065997340660404_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCG CCTGTGAC---------------------------------------------CTGCACG TATACATCCAGG------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------AGCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTAA-TGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAA-T----------------------------------- ------------------------CTCCCCCACCCTTAAG--------------AAGTTT CTT-------------------------------TGTAA--T------------------ ---------------------------------------------------TCTTCC--- -------------CA-TCCTT---------GAGAATGAACTTTGTGAGATCCGCCCCCTG CCCGCAAAACATTGCTCCAAACTCCAC--------------------------------- -----------------------CGCCTATCCCAAAACCTATAAGAATTAATCATAAT-- -------CC-C---ACCACCCTTTGCTGACTCTCTTTTTGGACTCAGCCTGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACAGGGACGCGTGTGA--CA----- >LTR7B_chr1_Sltr_8__chr1_109836879109837310__ TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATGC CCTGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTAAGTGAT-------CAAC---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAA-T----------------------------------- ------------------------TTCCCCCA-CCTTAGG--------------AAGGTT CTT-------------------------------TGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAACTTACTTTGTGAGATCCACCCCCTG CCCGAAAAACATTGCTCCTAACTCCAC--------------------------------- -----------------------CGCCTATCCCAAAACCTATAAGAACTAACGATAAT-- -------CC-C---ACCACCCTTCGCTGACTCTCTTTTCAGACTCAGACCGCCTGCGCCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT GTTCACATGGACGCATGAGA--C------ >LTR7B_chr3_Sltr_980__chr3_112479980112480409_+_ -GTCAGGCCTTTGAGCCCAAG-----------------------CTAAGCCATCATATAC CCTGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTTCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAA-T----------------------------------- ------------------------CTCCCCCACCCTTAAG--------------AAGTTT CTT-------------------------------TGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAATGTATTTTGTGAGATCCACCCCCTG CCCCCAAAACATTGCTCTTAACTCCAC--------------------------------- -----------------------TGCCTATCCCAAAACCTATAAGTACTAATGATAAT-- -------CT-C---ACCATCATTTGCTGACTCTCTTTTTGGACTCAGCCCGCCTGCA--- AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTACACACGGACACATGAGA--CA----- >LTR7B_chr3_Sltr_981__chr3_112554200112554626_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATAC CCTGTGAC---------------------------------------------CTGCACG TATACATCTAGA------------------------------------------------ -----------------------------TGTGCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----TTGATGAC ACT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTAACTGAT-------CAAG---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAA-T----------------------------------- ------------------------CTCCCCCATCCTTAAG--------------AAGGTT CTT-------------------------------TGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-TCCTT---------GAGAATGTATTTTGTGCCATCCACCCCCTG CCCACAAAACATTGCTCCTAACTCCAC--------------------------------- -----------------------TGCCTATCCCAAAATCTATAAGAACTAATGATAAT-- -------CT-C---ACCATCCTTTGC------TCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTACACATGGACGCATGTGA--CA----- >LTR7B_chr14_Sltr_483__chr14_9120074391201298__ TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TATACATCTAGA------------------------------------------------ -----------------------------TGGGCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATGGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ACT--------------------------------------------------------- -------------------------------CCACCATCGTGATTTGTTCCTGCCCTACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAA-T----------------------------------- ------------------------CTCCCCCACCCTGAAG--------------AAGGTA CTT-------------------------------TGTAA--T------------------ ---------------------------------------------------TC-CCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG CCCGCAAAAAATTGCTCCTAACTCCAC--------------------------------- -----------------------CACCTATCCCAAA-CCTATAAGAACTAATGATAAT-- -------CC-C---ACGACCCTTCGCTGACTCCTTTTTCGGACTCAGCCTGCCTGCACCC AGGTGA-----AA--TAAACAGCCT-GTTGCTCACACAAAGCCTG--TTT--G-TGGTCT CTTCACACAGACGCACGTGA--C------ >LTR7B_chr1_Sltr_127__chr1_6514543965145836_+_ -GTCAGGCCTCT-AGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAA---AGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCACTGTGATTTGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAA-T----------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ---------------------------------------------------TCTCCT--- -------------TA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCGCTG CCCGCAAAACACTGCTCCTAACTCCAC--------------------------------- -----------------------CGCCTATCCGAAAATCTATAAGAACTAATGATAAT-- -------CC-C---ACCACCCTTTCCTGACTCTCTTTTCGGACTCAGCCCGCCGGCACCC AGGTAA-----AA--TAAACAGCCTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGTGCGTGG--CA----- >LTR7B_chr1_2ltr_int_fr_13__chr1_116862347116862811_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TATACATCTAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTAACTGAT-------CAGT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAA-T----------------------------------- ------------------------CT--------------CCCCCACCCTTAAGAAGGTT CTT-------------------------------TGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAATGTATTTTGTGAGATCCACCCCCTG CCCACAAAACATTGCTCCTAACTTCAC--------------------------------- -----------------------CGCCTATCCCAAAACCTATAAGAACTAATGATAAT-- -------CC-C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AAGTGA-----AA--GAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGAACATGCATGA--CA----- >LTR7B_chr1_Sltr_147__chr1_9162719891627661_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TATATATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAGAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CCGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------ATACTTTGCAA-T----------------------------------- ------------------------CT--------------CCCCTGTCCTTAAGAAGGTT CTT-------------------------------TGTAA--T------------------ ---------------------------------------------------TCTCCT--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG CCCCCAAAACATTGCTCCTAACTCCAC--------------------------------- -----------------------CGCCTATCCCAAAACCTGTAAGAACTGATGATAAT-- -------CC-C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGGGGTCT CTTCACAGGAACACGTAAGA--CA----- >LTR7B_chr7_Sltr_1558__chr7_4585995345860413__ TGTCAGGCCCCTGAGCCCAAG-----------------------CTAAGCCATCATATCC C--GTGAC---------------------------------------------ATGCACA TACACATC-AGA------------------------------------------------ -----------------------------TAGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CTACCATTGTGATTTGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTATTTTGTAA-T----------------------------------- ------------------------CT--------------CCCCTACCCTTAAGAAGGTT CTT-------------------------------TTTAA--T------------------ ---------------------------------------------------TCTCCT--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCCCCCGCTG CCCACAAAACATTGCTCCTAACTCTAC--------------------------------- -----------------------CGCCTATCCCAAAACCTGTAAGAACTAATGATAAT-- -------CC-C---ACCACCATTTGCTGATTCTCTTTTCAAACTCAGACTGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCTTG--TTT--GGTGGTCT CTTCACACGGACGCGCATGA--C------ >LTR7B_chr1_Sltr_fr_102__chr1_41780394178500__ TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAG---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACGAAACAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGCAA-T----------------------------------- ------------------------CT--------------CCCCCACCCTTAAGAAGGTT C----------------------------------------------------------- ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG CCCACAAAACATTGTTCCTAACTCCAC--------------------------------- -----------------------CGCCTATCTCAAAACCTGTAAGAACTAATGATAAT-- -------CC-C---ACCACCCTTTGCTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGTACGTG---------- >LTR7B_chr9_Sltr_1675__chr9_124143582124144014_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAA---------------------------------------------CTGCATG TAGACATCCAGA------------------------------------------------ -----------------------------CGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAACAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAA-T----------------------------------- ------------------------CT--------------CCCCCACCCTTAAGAAGGTT C----------------------------------------------------------- ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCAACCCCTG CCCGCAAAACATTGCTCCTAACTCCAC--------------------------------- -----------------------CGCCTATCCCAAAACCTGTAAGAACTAATGATAAT-- -------CC-C---ACCACC-TTTGCTGACTCTTTTTTTGGACTCAGACCGCCTGTACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCCG--TTC--GGTGGTCT CTTCACACGGACGCATGAGA--CA----- >LTR7B_chr6_Sltr_1461__chr6_4883728348837746_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACA TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACAGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------GCATCATTGTGATTTGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAA-T----------------------------------- ------------------------CT--------------CCCCCACCCTTAAGAAGTTT C----------------------------------------------------------- ---------------------------------------------------CTCCCC--- -------------CA-CCCTT---------GAGAATGTACTATGTGAGATCCACCCCT-G CCCCCAAAACATTGTTCCTAACTCCAC--------------------------------- -----------------------TGACTATCCCCAAACCTATAAGAACTGATGATAAT-- -------CC-C---ACCACCCTTTGCTGACCCCTTTTTCAGACTCAGCAGGTCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTTCTCCCACAGAGCCTG---TT--GGTGGTCT CTTCACACGGATGCACGTGA--CA----- >LTR7B_chr9_Sltr_fr_1729__chr9_9465048894650911_+_ -GTCAGGCCTCTGAGCCCATG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCATG TATACATCCAGA------------------------------------------------ -----------------------------TGGCGTGAAGCTACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----TTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAA-T----------------------------------- ------------------------CT--------------TCCCCACCCTTAAGAAGGTT C----------------------------------------------------------- ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCTTG CCCTCAAAACATTGCTCCTAACTCCAC--------------------------------- -----------------------CGCCTATCCCAAAACCTGTAAGAACTAATGATAAT-- -------CC-C---ACCTCCCTTTGCTGACTCCTTTTTCAGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--CTT--GGTGGTCT CTTCACTCAGATG---------------- >LTR7B_chrX_Sltr_1797__chrX_3288946532889890_+_ -GTCAGGACTCTGAG-----------------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCCCT TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAG-AGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAA-T----------------------------------- ------------------------CT--------------CCCCCACCCTTAAGAAGGTT C----------------------------------------------------------- ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG CTCGCAAAACATCGCTCCTAACTCCAC--------------------------------- -----------------------CGCCTATCCCAAAACCTGTAAGAACTAATGATAAT-- -------CC-C---ACCACCCTTGGCTGACTCCTTTTTCAGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACTCGGAGGGGCGTGA--CA----- >LTR7B_chr2_Sltr_879__chr2_6328620563286667_+_ -GTCAGGCCTCTGAGTCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACA TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTAACCGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAA-T----------------------------------- ------------------------CT--------------CCCCCACCCTTAAGAAGGTT CTT-------------------------------TGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------TAGAA-GTACTTTGTGAGATCCACCCCCTG CCCCCAAAACATTGCTCCTAACTCCAC--------------------------------- -----------------------CGCCTATCCCAAAACCTGTAAGAACTAATGATAAT-- -------CC-C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCCTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGACACACGTGA--CA----- >LTR7B_chr16_Sltr_fr_572__chr16_6689730166897733__ TGTCAGGCCTCTGAGCTCAAG-----------------------CTAAGCCATCATATCC CTTGTGAC---------------------------------------------CTGCACC TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGGAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTTCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAA-T----------------------------------- ------------------------CT---------------CCC---------------- ------------------------------------------------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAAGGTACTTTGTGAGATCCACTCCCTG CCTGCCAAACATTGCTCCTAACTCCAC--------------------------------- -----------------------CGTCTATCCCCAAACCTATAAGAGCTAATGATAAT-- -------CC-C---ACCACCCTT-GCTGACTCCTTTTTCGGACTCAGCCCGCCTGAGTCC AAAATA-----AA--TAAACAGCCTTGTTGCTCACACAAAACCTG--TTT--GGTGGTCT CTTCACATGGACGTGCGTG---------- >LTR7B_chr3_Sltr_fr_1114__chr3_7889628678896663_+_ ------------------AAG-----------------------CTAAGCCATCATATCC CCAGTGAC---------------------------------------------CTGCACC TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGACGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTAATTTGCTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAA-T----------------------------------- ------------------------CT---------------CCC---------------- ------------------------------------------------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG CCCACAAAACATTGCTCCTAACTCCAC--------------------------------- -----------------------CGACTATCCCCAAACCTATAAGAACTAACGATAAT-- -------CC-C---ACTACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AAGTAA-----AA--TAAACAGCCTTGTTGCTCACAAAAA-------------------- ----------------------------- >LTR7B_chr22_Sltr_968__chr22_4274048542741050_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATGC ACTGTGAC---------------------------------------------CTGCAGG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAGGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGCTGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGGTTTGTTTCTGCCCCACT CTAACTGTT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAA-T----------------------------------- ------------------------CT---------------CCCCACCCTTAAGAAGGTT CTT-------------------------------TGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCGCTG CCCGCAAAACGTTGCTTCTAACTCCAC--------------------------------- -----------------------CGCCTATCCCCAAACCTGTAAGAACTAATGATAAT-- -------CC-C---ACCACCCTTTGCTGACTCTCCTTTCGGACTCAGCCCGCCTGCATCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAAGCTG--TTT--GATGGTCT CTTAACAGGGACATGCATGA--CA----- >LTR7B_chr19_Sltr_704__chr19_5440346054403923__ TGTCAGGCCTCTAAGCCCAAG-----------------------CTAAGCCATCCTATCC CCTGTGAC---------------------------------------------CTGCATC TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACCGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGGGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAT ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC CTGACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAA-T----------------------------------- ------------------------CT--------------TCCCCACCCTTAAGAAGGTT CTT-------------------------------TGTAA--T------------------ ---------------------------------------------------TTTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG CCCGCAAAACATTGCTCCTAACTCCAC--------------------------------- -----------------------CGCCTGTCCCCAAACCTGTAAGAACTAATGATAAT-- -------CC-C---ACCACCCTTTACTGACTCTGTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGACT CTTCACACGGACTCGCGTGA--C------ >LTR7B_chr6_Sltr_fr_1471__chr6_6584935865849819__ --TCAGGCCTCTGAGCCCAAG-----------------------CTAAACCATCATATCC CCTGTGAC---------------------------------------------CTGCAGG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCGGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------GTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC GTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAA-T----------------------------------- ------------------------CT--------------CCCCCACCCTTAAGAAGGTT CTT-------------------------------TGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCTACCCCCTG CCCACAAAACATTGGTCCTGACTCCAC--------------------------------- -----------------------CGCCTATCCCAAAACCTATAAGAACTAATGATAAT-- -------CC-C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACAGGGACGCACGTGA--C------ >LTR7B_chr8_Sltr_fr_1627__chr8_5191619251916638__ ----------------CCAAG-----------------------CTAAACCATCATATAC CCCGTGAC---------------------------------------------CTGCATG TAGACATCCAAA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAA------------ ------------------------------------------------------------ ----------ATCCACAAAATAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATC--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTAAGTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAA-T----------------------------------- ------------------------CT--------------CCCCCACCCTTAAGTAGGTT CTT-------------------------------TGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GATAATGTACTTTGTGAGATCCATCCCCTG CCCACA-AACATTGCTCCTAACTCCAC--------------------------------- -----------------------CCCCTATCCCCAAACCTATAAGAACTAATGATAAT-- -------CC-C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAGACAGCCTTGTTTCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGATGCACATGA--C------ >LTR7B_chr14_Sltr_451__chr14_3465029634650729_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------TTAAGCCATCATATCC CCAGTGAC---------------------------------------------CTGCACT TATACATCCACA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAGGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC TTAAATGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAA-T----------------------------------- ------------------------CT--------------CCCCCACCCTTAAGAAGATT CTT-------------------------------TGTAA--T------------------ ------------------------------------------------------------ --------------------------------------ACTTTGTGAGATTCACCCCCTG CCCGCAAAACATTGCTCCTAACTCCAC--------------------------------- -----------------------CACCTATCCCAAAACCTGTAAGAACTAATGATAAT-- -------CC-C---ACCACCCTTTGCTGACTCCCTTTTCAAACTCAGCCCGCCTGCACCC AGGAGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TT---GGTGGTCT CTTCACCGGGATGCGCGTGA--CA----- >LTR7B_chr14_Sltr_466__chr14_5282308152823574__ TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC ACTGTGAC---------------------------------------------CTGCACT TATATATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------T----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGCTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAA-T----------------------------------- ------------------------CT--------------CCCCCACCCTTAAGAAGGTA CTT-------------------------------TGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG CCCACAAAACATTGCTCCTACCTCCAC--------------------------------- -----------------------CACCTATCCCAAAACCTGTAAGAACTAATGATAAT-- --------C-C---ACCACCCTTTGCTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGTCTG--TTT--AGTGGTCT CTTCACACGGACGCGCGTGA--C------ >LTR7B_chr6_2ltr_int_fr_1386__chr6_114017713114018145__ TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC TCTATGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------GGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGACGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAA-C----------------------------------- ------------------------CT--------------CCCCCACCCTTAAGAAGGTT CTT-------------------------------TGTAA--T------------------ ---------------------------------------------------TCTCTC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCACTG CCTGCAAAACATTGCTCCTAACTCCAC--------------------------------- -----------------------CGCCTATCCCAAAACCTGTAAGAACTAACGATAAT-- -------CC-C---ACCACCCTTTGCTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTTCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACACGCATGA--C------ >LTR7B_chr6_Sltr_1483__chr6_8540429185404719_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTG-ACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCTACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCACTGTGATTTGTTTCTGCCCCACC CTAACTGAC-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAA-T----------------------------------- ------------------------CT--------------CCCCCACCCTTAAGAAAGTT CTT-------------------------------TGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-TGCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG CCCACAAAACATTGCTCCTAACTCCAC--------------------------------- -----------------------CGCCTATCCCCAAACATGTAAGAACTGATGATAAT-- -------CC-C---AC---ACTTGGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AAGTGA-----AA--TAAACAGTCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTAT CTTCACACGGACGCGCATGA--CA----- >LTR7B_chr13_Sltr_399__chr13_2462851524628944_+_ -GTCAGGCCTCCGGGCCCAAG-----------------------TTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCATG TATACATCCAGA------------------------------------------------ -----------------------------TGGCTTGAGGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAT GTT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTAAC-AAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAA-T----------------------------------- ------------------------CT--------------CCCCCACCCTTAAGAAGGTT CTT-------------------------------TGTAG--T------------------ ---------------------------------------------------TCTCCT--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCGCTG CCCACAAAACATTGCTCCTAACTCCAC--------------------------------- -----------------------TGCCTATCCCAAAACCTATAAGAACTAATGATAAT-- -------CC-C---ACCACCCTTGGCTGACTCTCTTTTCGGACTCAGCCTGCGTACACCC AGGTGA-----AA--TA--CAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGTGCATGA--CA----- >LTR7B_chr4_Sltr_1227__chr4_3501873635019171_+_ -GTCAGGCGTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCATG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAACAACTGAAT------------ ------------------------------------------------------------ ----------ATCCATGAAATAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAA-T----------------------------------- ------------------------CT--------------CGCCCACCCTTAGGAAGGTT CTT-------------------------------CGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAATATACTTCGTGAGATCCACCCCCTG CCTGCAAAACATTTCTCCTAACTCCAC--------------------------------- -----------------------TGCCTATCCCAAAACCTATAAGAACTAATGATAAT-- -------CC-C---ACCACCCTTTACTGACTCTCTTTTGGGACTCAGCCTGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT TTTCACATGGACGTGCATGA--CA----- >LTR7B_chr16_Sltr_558__chr16_51926845193149__ TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAACCATCATATCC TCTGTGAC---------------------------------------------CTGCATA TATACATTCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCACTGTGATTTGTTTCTTCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAA-T----------------------------------- ------------------------CT--------------CCCCCACCCTTAAGAAGGTT CTT-------------------------------TGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAAAGTACTTTGTGAGATCCACCCACTG CCCGCAAAACATTGCTCCTAACTCCCC--------------------------------- -----------------------TGCCTATCCCAAAACCTATAAGAACTAATGATAAT-- -------CC-C---CCTACCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCATCC AGGTAA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGATGTGCATGA--C------ >LTR7B_chr1_2ltr_int_fr_33__chr1_178040241178040673_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACA TATACATTCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATTCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTGA-T----------------------------------- ------------------------CT--------------CCCCCACCCTTAAGAAGGTT CTT-------------------------------TGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG CCCGCAAAACATTGCTCCTAACTCCAC--------------------------------- -----------------------CGCCTACCCCAAAACCTATAAGAACTAATGATAAT-- -------CC-C---ACCACCCTTTGCTGACTCTCTTTTCGGACTTAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTA--TTT--GGTGGTCT CCTCACATGGACGTGCATGA--CA----- >LTR7B_chr6_Sltr_fr_1424__chr6_151129380151129803_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACA TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAGGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAA-T----------------------------------- ------------------------CT--------------CCCCCACCCTTAAGAAGGTT CTT-------------------------------TGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCC-CTG CCCGCAAAACATTGCTCCTAACTCCAC--------------------------------- -----------------------CGCCTATCCCAAAACCTATATGAACTAATGATAAT-- -------CC-C---ACCACCCTTTGCTGACTCTCTTTTCGGACTTAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTAGTCT CTTCACTCGGACGC--------------- >LTR7B_chr7_2ltr_int_fr_1526__chr7_1265978812660220_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACA TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAATTGAAG------------ ------------------------------------------------------------ ----------ATCTACAAAAGAAGTGAAAATTAC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATGTGTTTCTGCCCCATC CTAACTGAT-------CAGT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAA-T----------------------------------- ------------------------CT--------------CCCCCACCCTTAAGAAGGTT CTT-------------------------------TGTAA--T------------------ ---------------------------------------------------TCTTCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG CCAGCAAAACATTGCTCCTGACTCCAC--------------------------------- -----------------------CGCCTATCCCAAAACCTATAAGAACTAATGATAAT-- -------CC-C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTAACCCAAAGCCTG--TTT--GGTGGTCT CTTTACATGGACACGTGTGA--CA----- >LTR7B_chr5_Sltr_fr_1361__chr5_6774847367748889_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGGC---------------------------------------------CTGCACT TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAG----CTGATGGC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTT----------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------T----------------------------------- ------------------------CT--------------CCCCCACCCTTAAGAAGGTT CTT-------------------------------TGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAAGGCACTTTGTGAGATCCACCCCCTG CATGCAAAACATTGCTCCTAACTCCAC--------------------------------- -----------------------CGCCTATCCCAAAACCTATAAGAACTAATGATAAT-- -------CC-C---ACCACGC-TTGCTGACTCC--TTTCAGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCC-G--TTT--GGTGGTCT CTTTACACAGACAC--------------- >LTR7B_chr6_Sltr_1445__chr6_1921254619213009_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACA TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----TTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTAGCTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAA-T----------------------------------- ------------------------CT--------------CCCCCACCCTTAAGAAGGTT CTT-------------------------------TGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG CCTGCAAAACATTACTCCTAACTCCAC--------------------------------- -----------------------CTCCTATCCCAAAACCTATAAGAACTAATGATAAT-- -------CC-C---ACCACACTTTGCTGACTCTGTTTTGGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTTACACGGACACGAGTGA--CA----- >LTR7B_chr18_Sltr_644__chr18_5904418359044618__ TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACA TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC GTT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAA-T----------------------------------- ------------------------CT--------------CCCCCACCCTTAAGAAGTTT CTT-------------------------------TGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCACTG CCCGCAAAACATTGCTCCTAACTCCAC--------------------------------- -----------------------CGCCTATACCAAAACCTATAAGAACTAATGAAAAG-- -------CC-C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTTGCACAAAGCCTG--TCT--GGTGGTCT CTTCACACGGACACACGTGA--C------ >LTR7B_chr12_2ltr_int_fr_297__chr12_114055744114056173_+_ -GTCAGGCTTCTGAGCCCAAG-----------------------CTAAGCCATTATATCC ACTGTGAC---------------------------------------------CTGCACA TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATA-C-------------------------- ---------------------------------C----------TTAA----CGGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGCTTCTGCCCCACC CTAACTGAT-------GAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAA-T----------------------------------- ------------------------CT--------------CCCC-------------GTT TTT-------------------------------TGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG CCTGCAAAACATTGCTCCTAACTCCGC--------------------------------- -----------------------CGCCTATCCCAAAACCTATAAGAACTAATGATAAT-- -------TC-C---ACCACCCTTTGCTGACTTTCTTTTTGGACTCAGCCCACCTTCACCC AGGTG------AT--TAAAAA-CTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACTCAGATGCACGTGA--CA----- >LTR7B_chr2_Sltr_851__chr2_3109399531094454_+_ -GTCAGGCCTCTGACCCCAAG-----------------------CTAAGCCATCACATGC CCTGCGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTAACAGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAA-T----------------------------------- ------------------------CT--------------CCCCCATCCTTAAGAAGGTT CTT-------------------------------TGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCATCCCCTG CCCACAAAACATTGTTCCTAACTCCAC--------------------------------- -----------------------TGCCTATCCCAAAACCTATAAGAACTAATGATAAT-- -------CC-C---AC---CCTTTGCTGACTCTCTTTTTGGACTTAGTCCACCAGCACCC AGGTG------AT--TAAAAAGCTTTATTGCTCACGCAAAGCCTG--TTT--GGTGGTCT CTTCACTTGGACATGCATGA--CA----- >LTR7B_chr11_Sltr_232__chr11_2354164923542112_+_ -GTCATGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------ATGCACC TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------G----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACAATTGTGATTTGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAA-T----------------------------------- ------------------------CT--------------CCCCCACTCTTAAGAAGGTT CTT-------------------------------TGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTGGTGAAACCCACCCCCTG CCTGCAAAACATTGCTCCTACTTCCAC--------------------------------- -----------------------CGCCTATCCCAAAACTTATAAGAACTAATGATAAT-- -------CC-C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCCGCCCACCTGCACCT AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACTCGGACATGCATGA--CA----- >LTR7B_chr7_Sltr_1581__chr7_94678189468249_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACA TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAAGAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------ATACTTTGTAA-T----------------------------------- ------------------------CT--------------CCCCCACCCTTGAGAAGGTT CTT-------------------------------TGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCTTT---------GAGAAAGTACTTTGTGAGATCGACCCCCTG CCAGCAAAACATTGCTCCTAACTCCAC--------------------------------- -----------------------TGCCTATCCCAAAACCTATAAGAACTGATGATAAT-- -------CC-C---ACCACCCTTTGCTGACTGTCTTTTCGGACTCAGCCTGCCTGCACC- AGGTGA-----AA--TAAACAGCCTTGTTACTCACACAAAGGCTG--TTT--GGTTGTCT CTTCACACAGACGTGCATGA--CA----- >LTR7B_chr1_Sltr_18__chr1_14697691470201_+_ -GTCAGGCCTCTGGGCCCAAG-----------------------CTAAGCCATCATATCT CCTGTGAC---------------------------------------------CTGCACT TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAATAAGTGAAAAGAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTAGCTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGCAA-T----------------------------------- ------------------------CT--------------CCCCCACCCTTAAGAAGGTT CTT-------------------------------TGTCA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCATCCCCTG CCCGCAAAACATTGTCCCTAACTCCAC--------------------------------- -----------------------CGCCTATCCCAAAACCTGTAAGAACTAGTGATAAT-- -------CC-C---ACCACCCTTTGCTGACTCTCTTTTTGAACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTTGTCT CTTCACACAGATGCACATGA--CA----- >LTR7B_chr1_Sltr_123__chr1_5870377958704237_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCTATCATATCC CCTGTGAC---------------------------------------------CTGCACG CATATATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACCGAAG------------ ------------------------------------------------------------ ----------AGCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTATTTCT-----ACC CCAATTGAT-------CAAC---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAA-T----------------------------------- ------------------------CT--------------CCCCCACCGTTAAGAAGGTT CTT-------------------------------TATAA--T------------------ ---------------------------------------------------CTCCCC--- -------------CA-CCCTT---------GAAAATGTACTTTGTGAGATCCAACCCCTG CCCCCAAAACATTGCTCTTAACTCCAC--------------------------------- -----------------------CGCCTATCCCAAAACCTAAAAGAACTAATGATAAT-- -------CC-C---ACCACCCTTTGCTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC AGATGA-----AA--TAAACAGCCTTGTTGCTGACACAAAGTCTG--TTT--GGTGGTCT CTTCACATGGATGCA-------------- >LTR7B_chr18_Sltr_fr_646__chr18_6745552767455986__ TGTCAGGCCTCTGGGCCCAGG-----------------------CTAAGCCATCATATCC CCAGTGAA---------------------------------------------TTGCACG CATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGGCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAA-T----------------------------------- ------------------------AT--------------CCCCCACACTTAAGAAGGTT CTT-------------------------------TATAA--T------------------ ---------------------------------------------------CTCCCC--- -------------CA-CCCTT---------GAGAATGTACTTTCTGAGATCCACCCCCTG CCCCCAAAACACTGCTCCTAACTCCAC--------------------------------- -----------------------TGCCTATCGCAAAACCTGTAAGAACTAATGTTGAT-- -------CC-C---ACCACCCTTTGCTGACTCT--TTTCGGACTCAGCCCGCCTGCACCC AGATGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACGTGGA--CACATG---------- >LTR7B_chr17_Sltr_591__chr17_1951861119519043__ TGTCAGGCCTCTGAGCCTAAG-----------------------CTAAGCCATCATAACC CCTGTGCC---------------------------------------------CTGCGTG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------AGCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------------------------------------------- ------------------------------------------------------------ CTT-------------------------------TGTAA--T------------------ ---------------------------------------------------CTCCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCTCCTG CCCACGAAACATTGCTCCTAACTCTAC--------------------------------- -----------------------CGCCTATCCCAAAACTTATAAGAACTAATGATAAT-- -------CC-C---ACCGCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCTCCTGCACCC AGGTGA-----AG--TAAACAGTCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CGTCACATGGATGC--------------- >LTR7B_chr4_Sltr_1222__chr4_2530982125310249__ TGTCAGGCCTCTGAGCCCAGG-----------------------CTAAGCCATCATATCC CCTACGCC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TCGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAG---TGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATGTGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------------------------------------------- ------------------------------------------------------------ CTT-------------------------------TGTAA--T------------------ ---------------------------------------------------CTCCCC--- -------------CA-CCCTT---------GAGAAGGTACTTTGTGAGATCCACCCCCTG CCCGCAACACAGTGCTCCTAACTCCAC--------------------------------- -----------------------CTCCTATCCCAAAACGTATAAGAACTAATAATAAT-- -------CC-----ACCACCCTTGGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGTTCACATAAAGCCTG--TTT--GGTGATCT CTTCACATGGATGC--------------- >LTR7B_chr8_Sltr_1620__chr8_2295138022951843__ TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGACATCATATCC CCTGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CCGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTAACGGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTATTTTGTAA-T----------------------------------- ------------------------CT--------------CCTCAACCCTTAAGGAGTTT CTT-------------------------------TGTAA--T------------------ ---------------------------------------------------CTCCCC--- -------------CA-CCCTT---------GAAAACGTATTTTGTGAGATCCAACCCCTG CCCCCAAAACATTGCTCCTAACTCCAC--------------------------------- -----------------------CGCCTATCCCAAAACCTATAAGAACTAATGATAAT-- -------CC-C---ACCACCCTTTGCTGACTCTCTTTTCGGATTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--CTT--GGTGGACT CTTTACATGGATGC--------------- >LTR7B_chr8_Sltr_fr_1624__chr8_3800427938004703_+_ -GTCAGGCCTCTAAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACA AATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------TCACCATTGTGAT--GTTTCTGCCCCACC CTAACTCAT-------CACT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAA-T----------------------------------- ------------------------CT--------------CTGCCACCCTTA-------- ------------------------------------------------------------ ------------------------------------------------------------ -------------CA-CCCTT---------GAGCATGTACTTTGTGAGATCCATCCCCTG CCCGCAAAACATTGCTCCTAACTCCAC--------------------------------- -----------------------TGCCTATCCCAAAACCTATAAGAACTAATGATAAT-- -------CA-C---ACCACCCTTTGCTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC AGGTGA-----GA--TAAACAGCCTTGTTGCTCACACAAA----G--TCC--GGTGGTCT CTTCACATGGATGCACATGA--------- >LTR7B_chr12_Sltr_fr_347__chr12_3195739531957882_+_ ---CAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGCGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCATC CTAACAGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTATTTTGTAA-T----------------------------------- ------------------------CT--------------CCCCCACCCTTAAGAAGGTT CTT-------------------------------TGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------AAGAAGGTACTTTGTGAGATCCACCCCCTG CCCGCAAAACATTGTTCCGGA--------------------------------------- ------------------------GCCTCTCCCAAAACCTATAAGAATTAAAGATAAT-- -------CC-C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGTCTTGTTGCTCACGCAAAGCTTG--TTT--GGTGGTCT CTTCACACGGATGCGCGTGA--CA----- >LTR7B_chr20_Sltr_fr_933__chr20_5579590455796334__ TGTCAGGCCTCTGAGCCCAAA-----------------------CTAAGCCATCTTATCC CCTGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCAACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAA-T----------------------------------- ------------------------CT--------------CCCCCACCCTTAAGAAGGTT CTT-------------------------------GGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGATATCCACCCCCTG CCCGCAAAACATTGCTCCTGACTCCAC--------------------------------- -----------------------CGCCCATCCCCAGACCTATAAGAACTAATGATAGT-- -------CC-C---ACCATCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCATGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGATGCGCGTG---------- >LTR7B_chr5_Sltr_1334__chr5_171008414171008846__ TGTCAGGCCTCTGAGCCCAAT-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCCTG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAATGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCCTTGTGATTTGTTTTTGCCCCACC GTAACTGAT-------GAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAA-T----------------------------------- ------------------------CT--------------TCCCCACCCTTAAGAAGGTT CTT-------------------------------TGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATTCACCCCCTA CCCGCAAAACATTGCTCCTAACTCCAC--------------------------------- -----------------------TGCCTATCCCAAAACCTGTAAGAACTAATGATAAT-- -------CC-C---ACCATGCTTTGCTGACTCTCTTTTCAGACTCAGCCTGCCTGCACCC AGGTGA-----AA--TAAACAGTCTTGTTGCTCACACAAAGCCTG--TTT--GGTGATCT CTTCACACGGACGTCCGTGA--C------ >LTR7B_chrX_Sltr_1841__chrX_9070602490706487_+_ -GTCAGGTCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTAAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACAATTGCGATTTGTTTCTTCCCCACC CTAACTGAT-------CAAC---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAA-T----------------------------------- ------------------------CTCCCTGACCCTTAAGCCCCCACCCTTAAGAAGGTT CTT-------------------------------TGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCTCTG CCTGCAAAACATTGCTCCTAACTCCAC--------------------------------- -----------------------GGACTATCCCAAATCCTGTAAGAACTAATGGTAAT-- -------CC-C---ACCACCCTTTGCTGACTCTCTTTTCAGACTCAGCCCACCTGCATCC AGGTGA-----AA--TAAATAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGATGCATGTGA--CA----- >LTR7B_chrY_Sltr_1895__chrY_42881844288647_+_ -GTCAGGTCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTAAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACAATTGCGATGTGTTTCTGCCCCATC CTAACTGAT-------CAAC---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAA-T----------------------------------- ------------------------CTCCCTGACCCTTAAGCCCCCACCCTTAAGAAGGTT CTT-------------------------------TGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCTCTG CCTGCAAAACATTGCTCCTAACTCCAC--------------------------------- -----------------------GGACTATCCCAAATCCTGTAAGAACTAATGGTAAT-- -------CC-C---ACCACCCTTTGCTGACTCTCTTTTCAGACTCAGCCCATCTGCATCC AGGTGA-----AA--TAAATAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGATGTGTGTGA--CA----- >LTR7B_chr2_Sltr_fr_849__chr2_2721591527216376__ TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCTATCATATCC CCTGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGTCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAATGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------ATACTTTGTAA-T----------------------------------- ------------------------CTCCCTTACCCTTAAGCTCCCACGCTTAAGAAGGTT CTT-------------------------------TGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTAAGATCCATCCCCTG CCCGCAAAACAGCACTCCTAACTCCAC--------------------------------- -----------------------TGCCTACCCCAAAACCTGTAAGAACTAATGATAAT-- -------CC-C---ACCACCCTTTGCTGACTCTCTTTTTGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTTACACGGACACACGTG---------- >LTR7B_chr2_Sltr_fr_850__chr2_2848136728481798__ -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCATCTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAA-T----------------------------------- ------------------------CTCCCCCACCCTTAAGTCCCCA-------------- ------------------------------------------------------------ ------------------------------------------------------------ ----------------CCCTT---------GAGAATGTACTTTGTGAGATCCATCCCCTG CCTGCAAAACAGCGCTCCTAACTCCAC--------------------------------- -----------------------TGCCTATCCCAAAACCTATAAGAACTAATGATAAT-- -------CC-C---ACCACTCTTTGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAATAGCCTTGTTGCTCACATAAAGCCTG--TTT--GGTGGTCT CATCACACGGACACGCGTGA--C------ >LTR7B_chr12_Sltr_361__chr12_5785560557856035_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGACGAC ATT--------------------------------------------------------- -------------------------------CCACCACTGTGATTGATTTCTGTCCCAAC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAA-T----------------------------------- ------------------------CTCCCGTACCCTTAAG--------------AAGGTT CTT-------------------------------TGTAG--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAATGTA-TTTGAGAGATCCACCCCCTG CCCGCAAAACAGTGCTCCTAACTCCAC--------------------------------- -----------------------CACCTATCCCAGAACCTATAAGAACTCATGATAAT-- -------CC-----ACCACCCTTTGCTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAATAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCATACGGACACGTGAGA--CA----- >LTR7B_chr17_Sltr_612__chr17_7576721975767648__ TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATAGCC CCCGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAT------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCACTGTGATTTGTTCCTGCCCCAAC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAA-T----------------------------------- ------------------------CTCCCCCACCCTTAAG--------------AAGGTT CTT-------------------------------TGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCATCCC-TG CCCGCAAAACATTGCTCCTAACTCCAC--------------------------------- -----------------------CACCTATCCCAAAACCTATAAGAACTAATGATAAT-- -------CC-C---ACCACCCTTTGCTTACTCT--TTTCAGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT GTTCACACGGACACGCGTGA--C------ >LTR7B_chr10_Sltr_206__chr10_9630859096309019__ TGTCAGGCCTCTGAGCCCAGG-----------------------CCAGGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATACACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCTCACC CTAACG-----------AAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTATTTTGTAA-T----------------------------------- ------------------------CTCCCCCACCCTTAAG--------------AAGGTT CTT-------------------------------TGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCTTT---------AAGAATGTACTTTGTGAGATCCGCCCCCTG CCCACAAAACATTGCTCCTAACTCCAC--------------------------------- -----------------------CGCCTATCCCAAAACCTGTAAGAACTAATGATAAT-- -------CC-C---ACCACCCTTTGCTGACTCTCTTTTCAGACTCAGCTCGCTTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAATGCCTG--TTT--GGTGGTCT CTTCACATGGACTCGAGTGA--C------ >LTR7B_chr8_Sltr_1605__chr8_122018613122019020__ TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------CAGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------T----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCTCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTGCTTTGTAA-T----------------------------------- ------------------------CTCCCC-ACCCTTAAG--------------AAGGTT CTT-------------------------------TGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-----------------------------------CCACCTCCTG CCTGCAAAACATTGCTCCTAACTCCAC--------------------------------- -----------------------CGCCTATCCCAAAACCTATAAGAACTAACGATAAT-- -------CC-T---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCGCGCCTGCACCC AGGTGA-----AA--GAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACACGCGTGA--C------ >LTR7B_chr16_Sltr_578__chr16_7570287375703304__ TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCAGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAACAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTCGTTTCTGTCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAA-T----------------------------------- ------------------------CTCCCCCATCCTTAAG--------------AAGGTT CTT-------------------------------TGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG CCCACAAAACATTTCTCCTAA-TCCAC--------------------------------- -----------------------CGCCTATCCCAAAACCTATAAGAACTAACGATAAT-- -------CC-C---ACCACCCTTTGCTCACTCTCTTTTCAGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--CTT--GGTGGTCT CTTCACACGGATGCGCATGA--C------ >LTR7B_chr3_2ltr_int_fr_997__chr3_128841595128842027__ TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAA-T----------------------------------- ------------------------CTCCTCCACCCTTAAG--------------AAGATT CTT-------------------------------TGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG CCCCCAAAACATTGCTCCTAACTCTAC--------------------------------- -----------------------CGCCTATCCCAAAACCTGTAAGAACTAATGATAAT-- -------CC-C---ACCACCCTTTGCTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGACGTGTTAGA--C------ >LTR7B_chr4_2ltr_int_fr_1235__chr4_5402007954020510_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAAC-------------------------- ---------------------------------C----------TTAA----CTGATGAT ACT--------------------------------------------------------- -------------------------------CCACCACTGTGATTTGTTTCTGCCCCACC TTAACTGAT-------CAAC---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTGCTTTGTAA-T----------------------------------- ------------------------CGCCCCCACCCTTAAG--------------AAGGTT CTT-------------------------------TGTAT--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTTAGATCCACCCCCTG C-CACAAAACACCACTCCTAACTCCAC--------------------------------- -----------------------CGCCTATCCCAAAACCTGTAAGAACTAATGATAAT-- -------CC-C---ACCACCTTTTGCTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTCTTGCTCACACAAAGTTTG--TTT--GGTGGTCT CTTCACACTGACGCGTGAGA--CA----- >LTR7B_chr5_Sltr_1336__chr5_172813151172813547__ TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTT----------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------T----------------------------------- ------------------------CTCCCCCACCCTTAAG--------------AAGGTT CTT-------------------------------TGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCACTG CCCGCAAAACATTTCTCCTAACTCCAC--------------------------------- -----------------------CTCCTATCCCAAAACCTGTAAGAACGAATGATAAT-- -------CC-C---ACCACCCCTTGCTGACTCTCTTTTTGGACTCAGCCTGCCTGCACCC AGGTGA-----T---TAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CGTCACACGGACGCGTGAGA--C------ >LTR7B_chrX_Sltr_1836__chrX_806258806732_+_ -GTCAGGCCTCTGAGCCCGAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG CATACATCCGGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAC------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATGGC-------------------------- ---------------------------------C----------TTCA----CTGTTGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCAACC GTAACTGAC-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTTCTTTGTAA-T----------------------------------- ------------------------CTCCCTAACCCTTAAG--------------AAGGTT CTT-------------------------------TGCGA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCTTT---------CAGAATGTACTTTCTGAGATCCATCCCCTG TCCCCAAAGCATTGCTCCTAACTCCAC--------------------------------- -----------------------CGCCTGTCCCCAAACCTATAAGAACTAATGATAAT-- -------CC-C---ACCACCCTTTGCTGACTCTCTTTTTGGAAACAGCCCGCCTGCACCC AGGTGA-----T---TAAAAAGCTGTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGTGAGA--CA----- >LTR7B_chrY_Sltr_1916__chrY_806258806732_+_ -GTCAGGCCTCTGAGCCCGAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG CATACATCCGGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAC------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATGGC-------------------------- ---------------------------------C----------TTCA----CTGTTGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCAACC GTAACTGAC-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTTCTTTGTAA-T----------------------------------- ------------------------CTCCCTAACCCTTAAG--------------AAGGTT CTT-------------------------------TGCGA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCTTT---------CAGAATGTACTTTCTGAGATCCATCCCCTG TCCCCAAAGCATTGCTCCTAACTCCAC--------------------------------- -----------------------CGCCTGTCCCCAAACCTATAAGAACTAATGATAAT-- -------CC-C---ACCACCCTTTGCTGACTCTCTTTTTGGAAACAGCCCGCCTGCACCC AGGTGA-----T---TAAAAAGCTGTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGTGAGA--CA----- >LTR7B_chr1_Sltr_fr_30__chr1_171398400171398798__ TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAACTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCT-------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ --------------------------CCCCCACCCTTAAG--------------AAGGTT CTT-------------------------------TGTAG--T------------------ ---------------------------------------------------TCTTCC--- -------------CA-CCCTT---------GAGAATGTGCTTTGTGAGATCCACCCACTG CCTGCAAAACATTGCTCCTAACTCCAC--------------------------------- -----------------------CGCCTATCCCCAAACCTATAAGAACTAATGATAAT-- -------CC-C---ACCACCCTTTGCTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TACACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGATGCGCATGA--------- >LTR7B_chrX_Sltr_fr_1787__chrX_2315701223157795_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAA---------------------------------------------CTGCGCG TATACATC-AGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCT-------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ --------------------------CCCCCATCCTTAAG--------------AAGGTT CTT-------------------------------TGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACTGCCTG CCCGCAAAACATTGCTCCTAACTCCAC--------------------------------- -----------------------CGCCTATCCCAAAACCTGTAAGAACTAATGATAAT-- -------CC-C---ACCATCCTTTGCAGACTCTCTTCTCGGGCTCAGCCCGCCTGCACCC AGGTGA-----AA--TACACAGCCTTATTGCTCACACAAAGCCTA--TTT--GGTGGTCT CCTGACACAGACGCGCATGA--CA----- >LTR7B_chr19_Sltr_696__chr19_5251648852516920_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCGTATCC CCTGTCAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACGAAAGAAGTGAAAATACC-------------------------- ---------------------------------C----------TTAA----GTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTATTTCTGCACCATC TTGACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTGCTTTGTAA-T----------------------------------- ------------------------CTCCCCCACCCTTCAG--------------AAGGCT CTT-------------------------------TGTAA--T------------------ ---------------------------------------------------CCTCCC--- -------------CA-CCCTT---------GAGAATGGACTTGGTGAGATCCACCCCCTG CCTGCAAAGCATTGCCCCTAACTCCAC--------------------------------- -----------------------CGCCTGTCCCAAAAGCTACAAGAACTAATGATAAT-- -------CC-C---ACCATACTTTGCTGACTCTCTTTTCACACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTCGTTGCTCACACAAAGCCTG--TTT--AGTGGTCT CTTCACACGGACGAGTGTGA--CA----- >LTR7B_chr19_Sltr_fr_699__chr19_5269931552699729__ -GTTAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TAGCCTGAAGCAACTG--------------- ------------------------------------------------------------ ------------------------TAAAAATATC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCAATATTGTGATTTGTTTCTGCCCTACC CTGACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTGCTTTGTAA-T----------------------------------- ------------------------CTCCCCCACCCTTCAG--------------AAGGCT CTT-------------------------------TGTAA--T------------------ ---------------------------------------------------CCTCCC--- -------------CA-CCCTT---------GAGAATGGACTTGGTGAGATCCACCCCCTG CCTGCAAAGCATTGCCCCTAACTCCAC--------------------------------- -----------------------CGCCTGTCCCAAAACCTATGAGAACTAATGATAAT-- -------CC-C---ACCACACTTTGCTGACTCTCTTTCCAGACTCAGCCCGGCTGCACCC AGGTGA-----AA--TAAACAGCCTCGTTGCTCACACAAAGCGTG--TTT--GGTGGCCT CTTCCCACAGACGTGCGTGA--C------ >LTR7B_chr19_Sltr_fr_701__chr19_5276053752760999__ -GTTAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TATATATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATGGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTGACTGAT-------CAAA---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAA-T----------------------------------- ------------------------CTCCCCCACCCTTCAG--------------AAGGTT CTT-------------------------------TGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTGGTGAGATCCACCCCCTG CCCGCAAAACATTGCTCCTAACTCCAC--------------------------------- -----------------------CGCCTGTCCCAAAACCTATGAGAACTAATGATAAT-- -------CC-C---ACCACACTTTGCTGACTCTCTTTCCAGACTCAGCCCGGCTGCACCC AGGTGA-----AA--TAAACAGCCTCATTATTTAAACAAATTGTG--TTT--GGCGGTCT CTTCACACGGACGTGCATTA--C------ >LTR7B_chr2_2ltr_int_fr_780__chr2_151309068151309482_+_ -GTAAGGCCTCTGAGCCCAAG-----------------------CTAAGCCACCATATCC CCAGTGAC---------------------------------------------CTGCACA TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------TTCCACA---GAAGTGAAAATAG--------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCAC- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ --------------GCTTTGTAA------------------------------------- -------------------------------------AAG--------------AAATTT CTT-------------------------------TGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCTTT---------GAGAATGTACTTTGTGAGATCCAACCCCTG CTCCCAAAACATTGCTCTTAACTCCAC--------------------------------- -----------------------CACCTATCCCAAAACCTATAAGAACTAATGATAAT-- -------CC-C---ACCACCCT-TGCTGACTCTGTTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGACACATGAGA--CA----- >LTR7B_chr3_Sltr_fr_990__chr3_125525402125525852__ TGTCAGACCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCAGTGAC---------------------------------------------CTGCACG TATATATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACA---GAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTTTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------TTACTTTGTAA-T----------------------------------- ------------------------CTCCCCCACCCTTAAG--------------AAGTTT CTT-------------------------------TGTAA--T------------------ ---------------------------------------------------TCTCTC--- -------------CA-CCCTT---------GAGAATGCACTTTGTGAGACCCACCCCCTG CCGCCAAAACATTGCTCTTAACTCCAC--------------------------------- -----------------------CACCTATCCCAAAACCTATAAGAACCAATGATAAT-- -------CC-C---ACCACCTTTTGCTGACTCT---TTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGTCTG--TTT--GGTGGTCT CTTCACACAGATACGT------------- >LTR7B_chr3_Sltr_974__chr3_105892416105892847__ TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTG-T---------------------------------------------CTCCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACCGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATGGTGATTTGTTTCTGCCCCACT CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAA-T----------------------------------- ------------------------CTCCCCCACCCTTAAG--------------AAGGTT CTT-------------------------------TGTAA--T------------------ ---------------------------------------------------CTCCCC--- -------------AA-CCCTT---------CAAAATGTACTATGTGAGATCCACCCCCTG CCCTCAAAACATTGCTCCTAATTCTAC--------------------------------- -----------------------CACCTATCCCCAAACCTATAAGAACTAATGATAAT-- -------CC-C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCCTGTTGCTCACACAAAGCCTG--TTT--GATGGTCT CTTCACTCAGACGTGCGTGA--C------ >LTR7B_chrY_2ltr_int_fr_1915__chrY_75005907501024_+_ -GTCAGGCTTCTGAGCCCAGA-----------------------CTAAGCCATCATATCC CCTGTGAA---------------------------------------------CTGCAAG TATATATCCAGA------------------------------------------------ -----------------------------TGGACTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAAC-------------------------- ---------------------------------C----------TTAA----CTGACGAT ATT--------------------------------------------------------- -------------------------------CCATCATTGTGATTTGTTTCTGCCCCGCC --AACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAG-C----------------------------------- ------------------------CTCCCCCACCCTTAAG--------------AAGGTT GTT-------------------------------TGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CTCTT---------GAGAATGTACTTTGTGAGATCCACTCTCTG CCTGCAAAACATGGCTCCTAACTCCAC--------------------------------- -----------------------CACCTATTCCAAAACCTATAAGAACTAATGACAAT-- -------CC-C---ACCACCCTTTGCTGACTCCTTTTTCGGACTCAGCCTGCCTGCACCC AGGTAA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT TTTCAGATGGATGTGCATGT--CA----- >LTR7B_chr14_2ltr_int_fr_467__chr14_5312874553129174_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTGAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCAGG TATACATCCAGA------------------------------------------------ -----------------------------TGGCTTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------AACCACAAAAG--------------------------------------- -------------------------------------------------------ATAAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATATGTTCCTGCCCCACC CTAACTGAT-------CAACTGACCTTATGACAATACACC-------------------- ------------------------CTCCCTGCCCTTGTGATAAT---------------- ------------------------------------------------------------ ------------GCACTTTGTGA-TAT--------------------------------- -------------------------TCCCCTGCTCTTAAC--------------AAGGTA CTT-------------------------------TATAATAT------------------ ---------------------------------------------------TCTCCC--- -------------TG-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCTGG CCCA-------------------------------------------------------- -------------------------CCTATCCC-AAACCTATAAGAACTAATGATAAT-- -------CC-C---ACCACAATTTGCTGACTCCTTTTTCAGACTCAGCCAACCTGCACCC AGGTGAATA--AA--C----AGCCTTGTTGCTCACACAAAGCCTG--TT---GGTGGTCT CTTCAAATGGACGTGCATGA--CA----- >LTR7B_chr21_2ltr_int_fr_937__chr21_1639773416398534__ TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAGCTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAG--------------------------------------- -------------------------------------------------------ATGAC ATT--------------------------------------------------------- -------------------------------CCACCACTGTGACCTGTTCCTGCCCCACC CTAACTGAT-------CAATTGACC-TATGACAATACACC-------------------- ------------------------CTCCCTGCCCTTGTGATAAT---------------- ------------------------------------------------------------ ------------GTACTTTGTGA-TAT--------------------------------- -------------------------TCCCCTGCCCTTAAG--------------AAGGTA CTT-------------------------------TGTGATAT------------------ ---------------------------------------------------TCCCCC--- -------------CG-CCCTT---------AAGAAGGTACTTTGTGAGATCCACCCCCTG CCCACAACAAATTGCTCCTAACTCCAC--------------------------------- -----------------------CGCCTATCCC-AAACCTGTAAGAACTAATGATAAT-- -------CC-C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCAC-C AGGTGATTA--AA--A----AGCTTTATTGCTCACACAAAGCCTG--TT---GGTGGTCT CTTCACATGGATGTGCGCGA--C------ >LTR7B_chr21_Sltr_fr_941__chr21_1769638617697193__ TGTCAAGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TATACATCCAAA------------------------------------------------ -----------------------------TGTCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAG--------------------------------------- -------------------------------------------------------ATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGACCTGTTCCTGCCCCACC CTAACTGAT-------CAATCGACC-TATGACAATACACC-------------------- ------------------------CTCCCTGCCCTTGTGATAAT---------------- ------------------------------------------------------------ ------------GTACTTTCTGA-TAT--------------------------------- -------------------------TCCCCCGCCCTTAAG--------------AAGGTA CTT-------------------------------TGTGATAT------------------ ---------------------------------------------------TCTCCC--- -------------CG-CCCTT---------AAGAAGGTACTTTGTGAGATCCACCCCCTG CCCACAACAAATTGCTCCTAACTCCAC--------------------------------- -----------------------CGCCTATCCC-AAACCTATAAGAACTAATGATAAT-- -------CC-C---ACCACCCTTTGCTGACTCCTTTTATGGACTCAGCCCGCCTGCAT-C AGGTGAATA--AA--C----AGCCCTGTTGCTCACACAAAGCCTG--TT---GGTGGTGT CTTCATACAGACACACATGA--C------ >LTR7B_chr21_Sltr_953__chr21_4357765143578119_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TATACACCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAG--------------------------------------- -------------------------------------------------------ATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATCTGTTCCTGCCCCACC CTAACTGAT-------CAACTGACCTTATGACAATACACC-------------------- ------------------------CTCCCTGCCCTTGCGATAAT---------------- ------------------------------------------------------------ ------------GGACTCTGTGA-TAT--------------------------------- -------------------------TCCCCTGCCCTTAAG--------------AAGGTA CTT-------------------------------CATAATAT------------------ ---------------------------------------------------TCTCCC--- -------------CG-CCCTT---------GAGAATGTACTTTGTGAGATCTACTCCCTG CCCACAAAAAATTGCTTCTAACTCCAC--------------------------------- -----------------------CGCCTATCCC-AAACCTATAAGAACTAATGATAAT-- -------CC-C---ACCACCCTTTGCTGACTCCTTTTTTGGACTCGGCCTGCCTGCAC-C ------------------------TTGTTGCTCACACAAAGCCTG--TT---GGTGGTCT CTTCACACGAACGTGCGTCA--CA----- >LTR7B_chr1_Sltr_38__chr1_188567566188568019_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGACATCATA-CC CCCGTGAC---------------------------------------------CTGCACG TGTACCTCCAGA------------------------------------------------ -----------------------------TGACCTAAAGCAACTGAAG------------ ------------------------------------------------------------ ----------AACCACAAAAG--------------------------------------- -------------------------------------------------------ATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATCTGTTACTGCCCCACC CTAACTGAT-------CAATTGACCTTATGACAATACACC-------------------- ------------------------TTCCCCGCCCTTGTGATAAT---------------- ------------------------------------------------------------ ------------GTACTTTGTGA-TAT--------------------------------- -------------------------TCCCTTGCCCTTAAG--------------AAGATA CTT-------------------------------TGTAATAT------------------ ---------------------------------------------------TCT------ ----------------CCCTT---------GAGAATGTACTTTTTGAGATCCACCCCCTG CCCACAAAAAATTGCTCCTAACTCCAC--------------------------------- -----------------------CACCTATCCC-AAAACTATAAGAACTAATGATAAT-- -------CC-C---ACCACCCTTTGCTGACTCCTTTCTCGGACTCAGCCCACCTGCACCC AGGTGAATA--AA--C----AGCCTTGTTGCTCACACAAAGCCTG--TT---GGTGGTCT CTTCACACAGACGCGTGTGA--CA----- >LTR7B_chr17_Sltr_615__chr17_7901089279011346_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACA TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------AACCACAAAAG--------------------------------------- -------------------------------------------------------ATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATCTGTTCCTGCCCCACC CTCACTGAT-------CAATTGACCTTATGACAATACACC-------------------- ------------------------CTCCCCACCCTTAGGATAAT---------------- ------------------------------------------------------------ ------------GTACTTCGTGA-TAT--------------------------------- -------------------------TCCCTCACCCTTAAG--------------AAGGTA CTT-------------------------------TGTAATAT------------------ ---------------------------------------------------TTTTCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG CCCACAAAAAATTGCTCCTAACTCCAC--------------------------------- -----------------------CACCTATCCC-AAACCTATAAGAACTAATGATAAT-- -------CC-C---ACTACTCTTTGCTGACTCCTTTCTCGGACTCCGCCCACTTGCACCC AGGTGAATA--AA--C----AGTCTTGTTGCTCACACAAGGCCCG---T---GGTGGTCT CTTCACATGGACGCATGTGA--CA----- >LTR7B_chr7_Sltr_1507__chr7_106567353106567841_+_ -GTCAGGACTCTGAGCCCAAG-----------------------CTAAGCCGTCATATCC CCGGTGAC---------------------------------------------CTGCACA TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAG--------------------------------------- -------------------------------------------------------ATAAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATCTGTTCCTGCCCCACC CTAACTGAT-------CAATTGACTTTGTGACAATACACC-------------------- ------------------------CTCCCCGCCCTTGCGATAAC---------------- ------------------------------------------------------------ ------------GTACTTTGTGA-TAT--------------------------------- -------------------------TCCGCCGCCCTCGAG--------------AATGTA CTT-------------------------------TGTAATAT------------------ ---------------------------------------------------TCTTCC--- -------------CA-TCCTT---------GAGAATGTACTTTGTAAGATCCACCCCCTG CCCAC-AAAAATTGCTCCTAACTCCAC--------------------------------- -----------------------CGCCTATCCC-AAACCTATAAGAACTAATGATAAT-- -------CC-C---ACCACCCTTTGCTGACTCCTTTTTCAGACTCAGCCCGCCTGCACCC AGGTGAAAA--AA--C----AGCCTTGTTGCTCACACAAAGCCTG--TT---GATGGTCT CTTCACACGGACGCATGTCA--CA----- >LTR7B_chr16_Sltr_567__chr16_6221742062217874__ TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCATG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGACG------------ ------------------------------------------------------------ ----------AACCACAAAAG--------------------------------------- -------------------------------------------------------ATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTATGATCTGTTCCTGCCCCACC CTAACTGAT-------CAATTGACCTTATGACAATACACC-------------------- ------------------------CTCCCCGCCCTTGCGATGAT---------------- ------------------------------------------------------------ ------------GTACTTTGTGA-TAT--------------------------------- -------------------------TCCCCCGCCCTTAAG--------------AAGGTA TTT-------------------------------TGTAACAT------------------ ---------------------------------------------------TCTCCC--- -------------TG-CCCTT---------GAAAATATACTTTGTGAGATCTACCCCCTA CCCACAAAAA----------ACTCCAC--------------------------------- -----------------------CGCCTATCCC-AAACCTATAAGAACTAATGATAAT-- -------CC-C---ACCACCCTTTGCTGACCCCTTTTTCGGACTTAGCCCACCTGCACCC AGGTGAATA--AA--C----AGCCTTGTTGCTCACACAAAGCCTG--TT---GGTGGTGT CTTCACACGGACATGTGTGA--C------ >LTR7B_chr2_Sltr_fr_793__chr2_171497618171498448__ TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCATG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------AACCACAGAAG--------------------------------------- -------------------------------------------------------ATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATCTGTTCCTGCCCCACC CTAACTGAT-------CAATTGACTTTGTGACAATACACC-------------------- ------------------------CTCCCTGCCCTTGC---GAT---------------- ------------------------------------------------------------ ------------ATTCTTTGTGA-TAT--------------------------------- -------------------------TCCCTCGCCCTTAAG--------------AAGGTA CTT-------------------------------TGTAATAT------------------ ---------------------------------------------------TCTCCC--- -------------TG-CCCTT---------GAGAATGTACTTTGTGAGATCCAGCCCCTG CTCGCAAAAAATTGCTCCTAACTCCAC--------------------------------- -----------------------CGCCTATCCC-AAACCTATAAGAACCAATGATAAT-- -------CC-C---AACACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGAATA--AA--C----AGTCTTGTTGCTCACACAAAGCCTG--TT---GGTGGTCT CTTCACACAGATGTGTGTGA--C------ >LTR7B_chr2_Sltr_842__chr2_231430429231430885_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------AACCACAGAAG--------------------------------------- -------------------------------------------------------ATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATCTGTTCCTGCCCCACC CTAACTGAT-------CAATTGACCTTATGACAATACACC-------------------- ------------------------CTCCCCGCCCTTGCGATCAT---------------- ------------------------------------------------------------ ------------GTACTTTGTAA-TAT--------------------------------- -------------------------TCCCCCACCTTTAAG--------------AAGGTA CTT-------------------------------TGTGATAT------------------ ---------------------------------------------------TTTCCC--- -------------TG-CCCTT---------GAGAATGTACTTTGTGAGATCCACCTCCTG CCCACAAAAAATTGCTCCTAACTCCAC--------------------------------- -----------------------CACCTATCCC-AAACCTATAAGAACTAATGATAAT-- -------CC-C---ACCACCCTTTGCTGACTCCTTTTTTGGACTCAGCCCGCCTGCACCC AGGTGAATA--AA--C----AGCCTTGTTGCTCACACAAAGCCTG--TT---GGTGGTCT TTTCACATGGACACGCGTGA--CA----- >LTR7B_chr22_Sltr_fr_961__chr22_2993978129940520_+_ -GTCAGGCCACTCTGCCCAGG-----------------------CTAAGCCATCATATCT CCTGTGAC---------------------------------------------CTGCCCG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------AACCATGAAAG--------------------------------------- -------------------------------------------------------ATGAC ATT--------------------------------------------------------- -------------------------------CAACCATTGTAATCTGTTCCTGCCCCACC CTAACTGAT-------CAATTGACCTTATGACAATACACC-------------------- ------------------------CTCCCCGCCCTTGCGATCAT---------------- ------------------------------------------------------------ ------------GTACTTTGTGA-TAT--------------------------------- -------------------------TTCCCTGCCCTTAAG--------------AAGGTA CTT-------------------------------TGTAATAT------------------ ---------------------------------------------------TCTCCC--- -------------TG-CGCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG CCCACAAAAATTTGTTCCTAATTCCAC--------------------------------- -----------------------TGCCTATCCC-AAACCTGTAAGAACTAATGATAAT-- -------CC-T---ACCACCCTTTGCTGAATCTTTTCTTGGACTCAGCCCGCCTGCACCC AGGTGAACA--AA--C----AGCCTTGTTGCTCACACAAAGCCTG--TT---GGTGGTCT CTTCACACGGATGCGTGTGA--CA----- >LTR7B_chrX_Sltr_fr_1785__chrX_16710321671750_+_ -----------------------------------------------------------C CCTGTGAC---------------------------------------------CTGCATG TATACATCTAGA------------------------------------------------ -----------------------------TGGCCTGGAGCAACTGAAG------------ ------------------------------------------------------------ ----------GACCACAGAAG--------------------------------------- -------------------------------------------------------ATGAC ATT--------------------------------------------------------- -------------------------------CTACCATTGTGATCTGTTCCTGCTCCACC CTTACTGAT-------CAGTTGACTTTGGGACAATACACC-------------------- ------------------------CTCCCCGCCCTTGCAGTCGT---------------- ------------------------------------------------------------ ------------GTACTTTGTGA-TAT--------------------------------- -------------------------TCCCCTGCCCTTAAG--------------AAGGTA CTT-------------------------------TGTAATAT------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCGTT---------GAGAATGTCCTTTGTGGCATCCACTCCCTG CCTAGAAAAAATTGCTCCTAACTCCAC--------------------------------- -----------------------TGCCTATCCC-AAACCTATAAGAACTAATGATAAT-- -------CC-C---GCCACCCTTTGCTGACTCTTTTTTTGGACTCAGCCCG--------- ------------------------------------------------------------ ----------------------------- >LTR7B_chrY_Sltr_fr_1880__chrY_16710321671750_+_ -----------------------------------------------------------C CCTGTGAC---------------------------------------------CTGCATG TATACATCTAGA------------------------------------------------ -----------------------------TGGCCTGGAGCAACTGAAG------------ ------------------------------------------------------------ ----------GACCACAGAAG--------------------------------------- -------------------------------------------------------ATGAC ATT--------------------------------------------------------- -------------------------------CTACCATTGTGATCTGTTCCTGCTCCACC CTTACTGAT-------CAGTTGACTTTGGGACAATACACC-------------------- ------------------------CTCCCCGCCCTTGCAGTCGT---------------- ------------------------------------------------------------ ------------GTACTTTGTGA-TAT--------------------------------- -------------------------TCCCCTGCCCTTAAG--------------AAGGTA CTT-------------------------------TGTAATAT------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCGTT---------GAGAATGTCCTTTGTGGCATCCACTCCCTG CCTAGAAAAAATTGCTCCTAACTCCAC--------------------------------- -----------------------TGCCTATCCC-AAACCTATAAGAACTAATGATAAT-- -------CC-C---GCCACCCTTTGCTGACTCTTTTTTTGGACTCAGCCCG--------- ------------------------------------------------------------ ----------------------------- >LTR7B_chr6_Sltr_1455__chr6_34689403469394_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCACATCT CCTGTGAC---------------------------------------------CTGCACA TATACATCCAGA------------------------------------------------ -----------------------------TGACCTGAAGCAAATGAAG------------ ------------------------------------------------------------ ----------AACCACAAAAA--------------------------------------- -------------------------------------------------------ATAAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATCTGTTCCTAC-CCACC CTAACTGAT-------CAATTGACCTTATGACAATACCCC-------------------- ------------------------CTCCCCGCCCTTGCAATAAT---------------- ------------------------------------------------------------ ------------ATACTTTGTCA-TAC--------------------------------- -------------------------TCCCCCGCCCTTAAG--------------AAGGTA CTT-------------------------------TGTAATAT------------------ ---------------------------------------------------TCTCCC--- -------------CG-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG CCTATAAAAAATTGCTCCTAACTCCAC--------------------------------- -----------------------CGCCTATCCC-AAACCTATAAGAACTAATGATAAT-- -------CC-C---AGCACCCTTTGCTGACTCCTTTCTTGGACACAGCCTGCTTGCACCC AGGTGAATA--AA--C----AGCCTTGTTGCTCACACAAAGCCTG--TT---GGTGGTCT CTTCATACAGATGCGCGTGA--CA----- >LTR7B_chr9_Sltr_fr_1684__chr9_1537980815380252__ TATCAGGCC--TCAGCCCAAG-----------------------CTAAGCTATCATATCC CCTGTGAC---------------------------------------------CTGCACA TATACATCTAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------AACCATAAAAG--------------------------------------- -------------------------------------------------------ATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGA--TGTTCCTGCCCCACC CTAGCTGAT-------CAACTGACCTTATGACAATACACC-------------------- ------------------------CTCCCCGCCCTTGCAATAAT---------------- ------------------------------------------------------------ ------------GTACTTTGTGA-TAT--------------------------------- -------------------------TCCCCGGCCCTTAAG--------------AAGGTA CTT-------------------------------TGTAATAT------------------ ---------------------------------------------------TCTCCC--- -------------TG-CCCTT---------GAGAATGTACGTTGTGAGATCCACCCCCTG CCCATAAAAAATTGCTCCTAACTCCAC--------------------------------- -----------------------CGCCTATCCC-AAACCTGTAAGAACTAATGATAAT-- -------CC-C---ACCACCCTTTGCTGACTCTCTTTTTGGACTCAGCCCACCTGCACCC AGGTG-TTA--AA--A----AGCTTTATTGCTCACACAAAGTCTG--TT---GGTGGTCT CTTCATACAGATGCATG------------ >LTR7B_chr4_Sltr_1139__chr4_109639934109640372__ TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACA TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------AACCACAAAAG--------------------------------------- -------------------------------------------------------ATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATCTGTTCTTGCCCCACC CTAACTGAT-------CAACTGACCTTATGACAATACACC-------------------- ------------------------CTCCC-GCCCTTGCGATAAT---------------- ------------------------------------------------------------ ------------GCACTTTGAGA-TAT--------------------------------- -------------------------TCCCCTGCCCTTAAG--------------AAGGTA CTT-------------------------------TGTAATAT------------------ ---------------------------------------------------TCTCCC--- -------------TG-CCCTT---------GAGAATGTACCTTGTGAGATCCACCCCCTG CCCACAAA---CTGCTCCTAATTCTAC--------------------------------- -----------------------CGCCTATCCC-AAACCTATAAGAACTAACGATAAT-- -------CT-C---ACCACCCTTTTCTGACT-------------CAGCCCGCCTGCACCC AGGTGAATA--AA--C----AGCCTTGTTACTCACACAAAGCCTG--TT---GGTGGTCT CTTCATACAAACGCACGTGA--C------ >LTR7B_chr7_Sltr_1557__chr7_4339741043397863__ TGTCAGGCATCTGAGCCCAAG-----------------------CTAAGCCATCATATGC CCTGTGAC---------------------------------------------CTGCACA TATACATCCAGA------------------------------------------------ -----------------------------TGACCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------AACCACAAAAG--------------------------------------- -------------------------------------------------------ATGAC ATT--------------------------------------------------------- -------------------------------CCACCACTGTGATCTGTTCCTGCCCCACT CTAACTGAT-------CAATTGACCTTATGACAATACACC-------------------- ------------------------CTCCCCACCCTTGCAATAAT---------------- ------------------------------------------------------------ ------------GTATTTTGTGA-TAC--------------------------------- -------------------------TCCCCCACCCTTAAG--------------AAGGTA CTT-------------------------------TGTAATAT------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GA-AATGTACTTGGTGAGATCCACCCGCTG CCCACAAAAAATTGCTCCTAACTCCAC--------------------------------- -----------------------CTCCTATCCC-AAACCTATAAGAACTAATGATAAT-- -------CC-C---ACCACCCTTTGCTGACTCTCTTTTCGTACTCAGCCCACCTGCACTC AGGTGAATA--AA--C----AGCCATGTTACTCACACAAAGCCTG--TT---GGTGGTCT CTTCACACAGACATGCATGA--C------ >LTR7B_chr1_Sltr_101__chr1_4095922040959662_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAGG------------ ------------------------------------------------------------ ----------AACCACAAAAG--------------------------------------- -------------------------------------------------------ATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATCTGTTCCTGCCCCACC CTAACTGAT-------CGATTGACTTTATGACAACACATC-------------------- ------------------------CTCC------------TAAT---------------- ------------------------------------------------------------ ------------GCACTTTGTGA-TAT--------------------------------- -------------------------TCCTCCGCCCTTAAG--------------AAGGTA CTT-------------------------------TGTAATAT------------------ ---------------------------------------------------TCTCCC--- -------------CG-CCCTT---------GAGAATATACTTTGTGAGATCCACCCCCTG ACCACAAAAAATTGCTCCTAACTCCAC--------------------------------- -----------------------TGCCTATCCC-AAACTTATAAGAACTAATGATAAT-- -------CC-C---ACCACTCTTTGCTGACTCTTTTTTCAGACTCAGTCTGCCTGCACCC AGGTGAATA--AA--C----AGCCCTGTTGCTCACACAAAGCCTG--TT---GGTGGTGT CTTCACACAGACGCGCGTGA--CA----- >LTR7B_chr9_Sltr_1681__chr9_129786513129786973_+_ -GTCGGGCCTCTGAGCCCAAG-----------------------CTAACCCATCATATCC CCTGTGAC---------------------------------------------CGGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAG--------------------------------------- -------------------------------------------------------ACGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATCTGTTCCTGCCCCACC CTAACTGAT-------CAACTGACCTTATGACAATACACG-------------------- ------------------------CTCCCCGCCCTTGTGATAAT---------------- ------------------------------------------------------------ ------------GCACTTTGTGA-TAT--------------------------------- -------------------------TCCCCCGCCCTTAAG--------------AAGGTA CTT-------------------------------TGTAATAT------------------ ---------------------------------------------------TCTCCC--- -------------CG-CCCTT---------GAGAATGTACTTCCTAAGATCCACCCCCTG CCCACAAAAAATTGCTCCTAACTCCAC--------------------------------- -----------------------TGCCTATCCC-AAACCCATAAGAACTAATGATAAC-- -------CC-C---ACCACCCTTTGCTGACTCTCTTTTCGGACT-AGCCCGCCTGCACCC AGTTGAATA--AA--C----AGCCTTGTTGCTCACACAAAGCCTG--TT---AGTGGT-- CTTCACACAGAAGCGCGTGA--CA----- >LTR7B_chr3_2ltr_int_fr_1074__chr3_3206746732067928_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACA TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAG--------------------------------------- -------------------------------------------------------ATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTAACTGAT-------CAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTACTTTGTAA-TCT--------------------------------- -------------------------TCCCCAACCCTTAAG--------------AAGTTT CTT-------------------------------TGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAATGTACCTTGTGAGATCCACCCACTA CCCACAAAACATTGCTCCTAACTCCAC--------------------------------- -----------------------CACCTATCCT-AAACGTATGAGAACTAATGATAAT-- -------CC-C---ACCACCCTTTGCTGACTCTCTTTTCAGACTCAGCCTGCCTGCACCC ACATGAATA--AA--C----AGTCTTGTTGCTCACACAAAGCCTG--TTT--AGTGGTCT CTTCACACAGATGCGTATGA--CA----- >LTR7B_chr9_Sltr_fr_1685__chr9_1541932015420038__ TGTCAGGCCTCTGAGCCCAAG-----------------------CTTAGCCATTATATCC CCTGTGAC---------------------------------------------CTGCACA TATACATCTAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------AACCACAAAAG--------------------------------------- -------------------------------------------------------ATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATCTGTTCCTGCCCCACC CTAACTGAT-------CAATTGACCGTATGACAATACACC-------------------- ------------------------CTCCCCGCCCTTGCGATAAC---------------- ------------------------------------------------------------ ------------GTACTTTGTAA-T----------------------------------- ------------------------------------------------------------ --------------------------------------A--T------------------ ---------------------------------------------------TCTCCC--- -------------TG-CCCTT---------GAGAATGTACGTTGTGAGATCCACCCCCTG CCCACAAAAAATTGCTCCTAACTCCAC--------------------------------- -----------------------CGCTTATCCC-AAACGTATAAGAACTAATGATAAT-- -------CC-C---AGCACCCTTTGCTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC A--------------------GCTTTATTGCTCACACAAAGCCTG--TTT--GGTAGTCT CTTCACACTGACGCGTGTGA--C------ >LTR7B_chr1_Sltr_129__chr1_66999316700411_+_ -ATCAAGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTATGAC---------------------------------------------CTGCACA TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAG--------------------------------------- -------------------------------------------------------AAGAT ATT--------------------------------------------------------- -------------------------------CCACCATGGTGATTTACTCCTGCCCCACC CTAACTGGT-------CAATTGGCCTTATGACAATACACG-------------------- ------------------------CTCCCCGCCCTTGTGATAAT---------------- ------------------------------------------------------------ ------------GTACTTTGTGA-TAT--------------------------------- -------------------------T---CCGCCCTTAAG--------------AAGGTA CTT-------------------------------TGTAATAT------------------ ---------------------------------------------------TCTCCC--- -------------CA-CTCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG CCCACAAAAAATTGCTCCTAACTCCAC--------------------------------- -----------------------CGCCTATCCC-AAACCTATAAGAACTAATGATAAT-- -------CC-C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCATACGCACCC AGGTGATTA--AA--A----AGGTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCGTGA--CA----- >LTR7B_chr17_Sltr_603__chr17_6214730562147946_+_ -GTCAGGC--CTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCATG TATACATCCAGA------------------------------------------------ -----------------------------TAGCCTGAAGCAACCGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAG--------------------------------------- -------------------------------------------------------ATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC CTAACTGAT-------CAATTGACTTTGTAACAATACACC-------------------- ------------------------CTACCC-CCCTTGCCATAAT---------------- ------------------------------------------------------------ ------------GTACTTTGTGA-TAT--------------------------------- -------------------------TCTCCCCCCCTTAAG--------------AAGATA CTT-------------------------------TGTAATAT------------------ ---------------------------------------------------TCCCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCC-CTG CCCGCAAAACATTGCTCCTAACTCCAC--------------------------------- -----------------------GGCTTATCCC-AAACCTATAAGAACTAATGATAAT-- -------CC-C---ACCACCCTTTGCTGACTCTCTTTTCGGACACAGCCC-CCTGCACCC TGGTGACTA--AA--A----AGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGACGCACGTGA--CA----- >LTR7B_chr2_Sltr_874__chr2_5722524957225700__ TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCACATCC CCTGTGAC---------------------------------------------CTGCACA TATACATGCAGA------------------------------------------------ -----------------------------CGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------AACCACAAAAG--------------------------------------- --------------------------------------------------------TGAT ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATCTGTTCCTTCTCCACC CTAACTGAT-------CAATTGAGTTTATGACAATATGCC-------------------- ------------------------CTTCCCGCCCTTGCGATAAT---------------- ------------------------------------------------------------ ------------GTACTT-GTGA-TAT--------------------------------- -------------------------TCCCCCACCCTTAAG--------------AAGGTA CTT-------------------------------TGTAATAT------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTGGGGAGATCCATCCACTG CCCACAAAACATTGCTCCTAACTCCAC--------------------------------- -----------------------CGCCCATCCC-AAACCTATAAGATCTAATGATAAT-- -------CC-C---ACCACCTTTTGCTGACTCTCTTTTCAGACTCAGCCAGCCTGCACCC AGGTGATTA--AA--A----AGCTTTATTACTCACACAAAGTCTG--TTT--GATGGTCT CTTCACGCAGATGCACCTGA--C------ >LTR7B_chr5_Sltr_1335__chr5_171369080171369551_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCACATCC CCTGTGAC---------------------------------------------CTGCAGG TATACATCTAGA------------------------------------------------ -----------------------------TGGCCCGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAG--------------------------------------- --------------------------------------------------------TGCC TTT--------------------------------------------------------- -------------------------------CCACCATTGTGCTTTGTTCCTGCCCCACC CTCACTGAT-------CAGTTGACCTTATGACAATACACG-------------------- ------------------------CTCCCCGCCCCTGCGATCAT---------------- ------------------------------------------------------------ ------------GTACTTTGTGA-TAT--------------------------------- -------------------------TC-CCCGCCCTTAAG--------------AAGGTA CTT-------------------------------TGTAATAT------------------ ---------------------------------------------------TCTTCC--- -------------CA-CCCTT---------GAGAATGGACTTTGTAAGATCCGCCCCCTG CCCACAAAAAATTTCTCCTAACTCCAC--------------------------------- -----------------------TGCCTATCCC-AAACCTATAAGAACTAATGATAAT-- -------CC-C---ACCACCCTTTGCTGACTCTCTTTTCAAACTCAGCCTGCCTGCGCCC AGGTGATTA--AA--A----AGCTTTATTGCTCACCCAAAGCCTG--TTT--GGTGGTCT CTTCACACAGACGCGCGTGA--CA----- >LTR7B_chr4_Sltr_1140__chr4_109784814109785262_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCT CCTGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------AACCACAAAAG--------------------------------------- -------------------------------------------------------ATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATCTGTTCCTGCCCCACT CTAACCGGT-------CAATTGACCTTATGACAATACACC-------------------- ------------------------CTCCCCACCCTTGCGATAAT---------------- ------------------------------------------------------------ ------------GTACTTTGTGA-TAT--------------------------------- -------------------------TCCCCCGC----AAG--------------AAGCTA CTT-------------------------------TGTAATAT------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTGAGATCCACCCCCTG CCCACAA---ATTGCTCCTAACTCCAC--------------------------------- -----------------------TGTCTGTCCC-AAACCTATAAGAACTAATGATAAT-- -------CT-C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGATTA--AA--A----AGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGACACACGTGA--CA----- >LTR7B_chr2_2ltr_int_867__chr2_4759106447591646__ TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATAC CCTGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCC---AAAGAAGTGAAAATAGC-------------------------- ---------------------------------CAGTTCCTGCCTTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCTTGCCCCATC CTAACTGAT-------CAATTGACTTTTTGACAACACACT-------------------- ------------------------CTCCCCACCCTTGAGATAAT---------------- ------------------------------------------------------------ ------------GTACTTTGTGA-TAT--------------------------------- -------------------------TCCCCCACCCTTAAG--------------AAGGTA CTT-------------------------------TGTAATAT------------------ ---------------------------------------------------TCTCCC--- -------------CG-CCCTT---------AAGAATGTACTTTGTAAGATCCACACCCTG CCTGAAAAACATTGCTCCTAATTCCAC--------------------------------- -----------------------CACCCATCCC-AAACCTATAAGAACTAATGATAAT-- -------CC-C---ACCACCTTTTGCTGACTCTCTTTTCGGACTTAGCCCGCCTGCACCC AGGTGATTA--AA--A----AGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CCTCACACGGACGTGCATGA--C------ >LTR7B_chr6_Sltr_1425__chr6_151525284151525766_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGCAG------------ ------------------------------------------------------------ ----------AACCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------CAGGTCCTGCCTTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC CTAACTGAT-------CAATTGACCTTATGACAATACACC-------------------- ------------------------CTCCCCACCCTTGGGATAAT---------------- ------------------------------------------------------------ ------------GTACTTTGTGA-TAT--------------------------------- -------------------------TTCCCCACCCTTAAG--------------AAGGTA CTT-------------------------------TGTAATAT------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTAAGATCCACCCCCTG ACCACAAAA-ATTGCTCCTACCTCTAC--------------------------------- -----------------------CACCTATCCC-AAACCTTTAAGAACTAATGATAAT-- -------CC-C---ACCACCCTTTGCTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC AGGTGATTA--AA--A----AGCTTTATTGCTCACACAAAGCCTG--TTG--GGTGGTCT CTTCATACAGATGTGCATGA--CA----- >LTR7B_chr15_2ltr_int_fr_502__chr15_4113129641131816_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCTATCGTATCC CCTGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGAGAAAATAGC-------------------------- ---------------------------------CAGTTCCTGCCTTAA----CTGATGAT ATT--------------------------------------------------------- -------------------------------CCAACATTGTGATTTGTTCCTGCCCCACC CTAACTGAT-------CAGTTGACTTTGTGACAATATACCCTCCCTGCCCTTGCGATAAT GTACTTTGTGATATTCCCCTGCCC------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ -------------------TT---------GTGAATGTACTTTGTAAGATCCACCCCCTG CCCACAAAAAATTGCTCCAACCTCCAC--------------------------------- -----------------------CGCCTATCCC-AAACCTATAAGGACTAATGATAAT-- -------CC-C---ACCCCCCTTTGCTGACTCTCTTTTCAGACTCAGCCCACCTGCACTC ATTTGATTA--AA--C----AGCTTTGTTCCTCACACAAAGCCTG--TTT--GGTCGTCT CTTCACACGGACTCATGTGA--CA----- >LTR7B_chr19_2ltr_int_fr_690__chr19_4610961646109974__ TGTCAGGCCTCTGAGTCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CCGCATG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTAAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------CAGTTCCTGCCTTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC CTAACTGAT-------CAATTGACTTTCTGACAATACACCCTCCCCACCCTTGTGATAAC -TACTTTGTGATATTCCCCCACCC------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ -------------------TT---------GTGAATGTACTTTGTAATATTC-------- ------------------------------------------------------------ -----------------------------TCCC-CCACCCTTAAGAA------------- ------------------------------------------------------------ ----------------------------------------------------GGTACTTT ----------------------------- >LTR7B_chr4_Sltr_1244__chr4_7591080775911327__ TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATGC CCTGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGAGAAAATAGC-------------------------- ---------------------------------CAGTTCCTGCCTTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------TCACCATTGTGATTTGTTCCTGCCCCACC CTAACTGAT-------CAATTGACTTTGTGACAAGACACCCTCCCCACCCTTGCAATAAT GTACTTTGTGATATTCCCCCGCCC------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ -------------------TT---------GTGAATGTACTTTGTAAGATCCACTTCCTG CCTGCAAAAAATTGCTCCGAACTCCAC--------------------------------- -----------------------CGTCTATCCC-AAACCTATAAGAACTAATGATAAT-- -------CC-T---ACCACCCTTTGCTGACTCCTTTTTTGGACTCAGCCCACGTGCACCC AGGTGATTA--AA--A----AGCTTTATTGCTCACATGAAGCCTA--TTT--GGTGGTCT CTTCACACAGATGTGTGTGA--C------ >LTR7B_chr2_Sltr_758__chr2_111999704112000247__ TGTCAGGACCCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TATACACCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACCGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------CAGTTCCTGCCTTAC----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC CTAACTGAT-------CAATTGACTTTGTGACAATACACCCTCCCTGCCCTTGGGATAAT GTACTTTGTGGTATTCCCCCACCC------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ -------------------TT---------GCGAATGTACTTTGCAAGATCCACCCCCTG CTTACAAAAAATTGGTCCTAACTCCAC--------------------------------- -----------------------TGCCTATACC-AAACCTGTAAGAACTAATGATAAT-- -------TC-C---ACCATCCTTTGCTGACTCCTTTTTCGGACTCAGCCCACCTGCACCC GGGTGATTA--AA--A----AGCTTTACTGCTCACACAAAACCTG--TT---GGTGGTCT CTTCACATGGACACGTGTGA--C------ >LTR7B_chr12_Sltr_342__chr12_2490739624907943_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTAATCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCAACAAAAG---TGAAAATAGC-------------------------- ---------------------------------AGGTTCCTGCCTTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACTGTTGTGATTTGTTCCTGCCCCACC CTAACCGAT-------CAATTGACTTTGTGACAATACACCCTCCCTGCCCTTGCGATAAT GTACTTTGTGATATTTCCCCACCC------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ -------------------TT---------GTGAATGCACTTTGTAATATCCATCCCCTG CCCACAAAAAATTGTTCCTA-CTCCAC--------------------------------- -----------------------CGCCTATCCC-AAACCTCTAAGAACTAATTATAAT-- -------CC-C---ACCACCCTTTGCTGACTCTCTTTTCAGACTCGGCCCGCCTGTACCC AGGTGATTA--AA--A----AGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGAACACACATGA--CA----- >LTR7B_chr17_Sltr_599__chr17_5360808653608641_+_ -GTCAGACCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACA TATGCATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------TAGTTCCTGCCTTAA----CTGATGGC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATCTGTTCCTGCCCCACC CTAACTGAT-------CGATTGACTTTGTGACAATACACCCTCCCCACCCTTGCGATAAT GGACTTTGTGATATTCCCCCACCC------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------GTGAATGTACTTTGTAATATCCACCCCCTG CCCACAAAAAGTTGCTCCTAACTCCAC--------------------------------- -----------------------CATCTGTCCA-AAACCTCTAGGAACTAATGATAAT-- -------CC-C---ACCACTCTTTGCTGACTCTCTTTTCGAACTCAGCCCTCCTGCACCC AGGTGATTA--AA--A----AGCTTTATTGATCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACACACATGA--CA----- >LTR7B_chr19_Sltr_fr_655__chr19_1434370614344527_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCAT- -ATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------CAGTTCCT-CCTTAA----CTGATGAC ATC--------------------------------------------------------- -------------------------------CCACCATCGTGATTTGTTCCTGCCCAACC CTAACTGTT-------CAACTGACTTTGTGACAATATACCCTCCCCGCCCTTGCAATAAT GTACTTTGTGATATTCCCCCGCCC------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ -------------------TT---------ATGAATGTACTTTGTATGATCCACCCCCTG CCTGCAAAAAATTGCACCTAACTCCAC--------------------------------- -----------------------CACCTATCCC-AAACCTATAAGAACTAATGATAAT-- -------CC-C---ATCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AAA-----A--AA--A----AGCTTTATTGCTCACGCAAAGCCTG--TTT--GGTGGCCT TTTCACACGGATGCACGTGA--CA----- >LTR7B_chrX_Sltr_1784__chrX_1645637216456926__ TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATTC CCTGTGAC---------------------------------------------CTGCATG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATACACAAAAGAAGTGAAACTAGC-------------------------- ---------------------------------CAGTTCCTGCCTTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC CTAACTGAT-------CAATTGACTTTGTGACAATACACCCTCCCTGCCCTTGCAATAAT GTATTTTGTGATATTCCCCTGCCC------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ -------------------TT---------GTGAATGTACTTTGTAAGATCCACCCCCTG CCTGTAAAAAATTGCCCCTAACTCAAC--------------------------------- -----------------------CGCCTATCCC-AAACCTATAAGAACTAATGATAAT-- -------CC-C---ACTACCCTTTGCTGACTCTCTTTTCAGATTCAGCCCGACTGCACCC AGGTGATTA--AA--A----AGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT TTTCACACGAACTCGTGTGA--C------ >LTR7B_chr1_Sltr_26__chr1_163233522163234037__ TGTCAGGCCCCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------CAGTTCCTGCCTTAG----CTG-TGA- -TT--------------------------------------------------------- -------------------------------CCACCATTGTGATCTGTTCCTGCCCCACC CTAACTGAT-------CAACTGACTTTGTGAAAATACACCCTCCCTGCCCTTGTGATAAT GTACTTTGTGATAGTCCCCCGCCC------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ -------------------TT---------GTGAATGTACTTTGTAAGATCCACCCCCTG CC--TCAAAAATTGCTCCTAACTCCAC--------------------------------- -----------------------CACCTATCCC-AAACCTATAAGAACTAATGATAAT-- -------CC-C---ACTACCCTTTGCTGACTCTCTTTTTGGACTCAGCCCATCTGCACCC AGGTGATTA--A---A----AGCTTTATTGCTCACACAAAGCCTG--TTT--GATGGTCT CTTCACATGGACACGCATGA--C------ >LTR7B_chr6_Sltr_1415__chr6_142104792142105342__ TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCG CCTGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCGGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------CAGTTCCTGCCTTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATCTGTTCCTGCCCCACC CTAACTGAC-------CAACTGACTTTGTGAAAATACCCCCTCCCCGCCCTTTCGATAAT GTACTTTGTGATATTCCCCCGCCC------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ -------------------TT---------GTTAATGTACTTTGTAAGATCCACCCCCTG CC---CAAAAATTGCTCCTAACTCCAC--------------------------------- -----------------------TGCCTATCCC-AAACCTATAAGAACTAATGATAAT-- -------CC-C---ACCACCCTTTGCTGACTCTCTTTTTGGACTCAGCCCGCCTTCACCC AGGTGATTA--AA--A----AGCTTTATTACTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATCCATGCATGTGA--C------ >LTR7B_chr14_Sltr_455__chr14_4445007844450708__ TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGACATCATATCC CCTGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGTAG------------ ------------------------------------------------------------ ----------GTCCACCAAAGAAGTGAAAATAGC-------------------------- ---------------------------------CAGTTCCTGCCTTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCACTGTGATTTGTTCCTGCCCCACC CTAACTG-T-------CAATTGACTTTGTGACAATACACCCTCCAGGCCCTTGTGATAAT GTACTTTGTGATATTCCCCTGCCC------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ -------------------TT---------GTGAATGTACTTTATAAGATCCAGCCCCTG CCCATAAAAAATTGCTCCTAACTCCAC--------------------------------- -----------------------CACCTATCCC-ATACCTATAAGAACTAACGATAAT-- -------CC-C---ACCACCCTTTGCTGACTTTCTTTTCGGACTCAGCCTGCCTGCAGCC AGGTGATTA--AA--A----AGCTTTATTGCTCACACAAAGCCTA--TTT--GGTGGTCT CTTCACATGGATGCGCATGA--C------ >LTR7B_chr2_Sltr_910__chr2_9804455398045106__ TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACT TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------CAGGTCCTGCCTTAG----CTAATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC CTAACTGAT-------CAATTGACTTTGTGACAATACACCCTCCCCGCCCTTGTGATAAT GTACTTTGTGATATTCCCCCACCC------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ -------------------TT---------AAGAAGGTACTTTG---GATCTACCCCCTG TCGCAAAAAAATTGCTCCTAACCCCAC--------------------------------- -----------------------CGCCTATCTC-AAACCTATAAGAACTAATGATAAT-- -------TC-C---ACCACCCTTTGCTGACTCTCTTTTCAGACTCAGCCCACCTGCACCC AGGTGGTTA--AA--A----AGCTCTATTGCTCACACAAAGCCTG--TTT--AGTGGTCT CTTCACATGGATGCACGTGA--C------ >LTR7B_chr7_Sltr_1514__chr7_119838679119839160__ TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGTGTG TATACATCTAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAGAAGAAGTGAAAATAGC-------------------------- ---------------------------------CAGGTCCTGCCTTAA----CTGATGAC CTT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCTTGCCCCACC CTAACTGAC-------CAATTGACCTTTTGACAGTATACCCTCCCCGCCCTTGTGATAAT GTACTTTGTGATATTCCCCTGCCC------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ -------------------TT---------AAGAAGGTACTTTG---GATC-ACCCCCTG TCCATAAAAAATTGCTCCTAACTCCAC--------------------------------- -----------------------CGCCTATCTC-AAACCTATAAGAACTAATGATAAT-- -------CC-C---ACCACCGTTTGATGACTCTCTTTTTGGACTCAGCCCACCTGCACCC AGGTGATTA--AA--A----A-CTTTATTGTTCACACAAAGCCTG--TTT--GGTGGTCT CTTTACACGGACGCGTGTGA--C------ >LTR7B_chr4_Sltr_1249__chr4_7969642979696950_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAGAAGAAGTGAAAATAGC-------------------------- ---------------------------------CAGTTCCTGCCTTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTAATTTGTTCCTGCCCCACC CTAACTGAT-------CAATTGACTTTGTGACAATACACCCTCCCTACCCTTGCGGTAAT GTAATTTGTGATATTCCCTCACCC------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ -------------------TT---------GTGAAGGTACTTTGTAAGATCCACCCCCTG CCCACAAAAAATTGCTCCTAACTCCAC--------------------------------- -----------------------CGCCTATCCC-AAACCTGTAAGAACTAATGATAAT-- -------CC-C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACCTTCACCC AGGTGATAA--AA--A----AGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGATGTGCATGA--CA----- >LTR7B_chr1_Sltr_85__chr1_238276117238276672__ TGTCAGGCCTCTGAGCCCAAC-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGACCTGAAGCAACCGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------CAGTTCCTGCCTTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTATTCCTGCTCCACC CTAACTGAT-------CAATTGACTTTGTGACAATACACCCTCCCCACCCTTGCAATAAT GTACTTTGTGATATTCCTCTGCCC------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ --------------------------------------AG--------------AAGGTA CTT-------------------------------TGTAATAT------------------ ---------------------------------------------------TCCCCC--- -------------CA-C-CTT---------GAGAATGTGCTTTGTAAGATCCACCCCCTG CCCACAAAAAATTGCTCCTAACTCCAC--------------------------------- -----------------------TACCTATCCC-AAACCTATAAGAACTAATGCTAAT-- -------CC-C---ACCACTCTTCGCTGACTCTCTTTTTGGATTCAGCCTACCTGCACCC AGGTGATTA--AA--A----AGCTTTATTGCTCACACAAATCCTG--TTT--GGTGGTCT CTTCACATGGACGCGTATGA--C------ >LTR7B_chr2_Sltr_797__chr2_179060642179061163__ TGTCAGGCCTCTGAGCCCGAG-----------------------CTAAGCCATCATA-CC CCTGTGAC---------------------------------------------CTGCAGG TATATATCCAGG------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAC------------ ------------------------------------------------------------ ----------ATCCAGAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------CAGTTCCCACCTTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTGCCCCATC CTAACTGAT-------CAATTGACTTTGTGACAATACACCCTCCCCGCCCTTGGGATAAT GTAGTTTGTGATATTCCCCCACCC------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ --------------------------------------AG--------------AAGGTA CTT-------------------------------TGTAATAT------------------ ---------------------------------------------------TCACCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTAAGATCCACCACCTG CCTGCAAAAAATTGCTCCTAACTCCAC--------------------------------- -----------------------CACCTATCCC-AAACCTATAAGAACTAATGATAAT-- -------CC-C---ACCACTCTTTGCTGACTCTCTTTTTGGACTCAGTCCACCTGCACCC AGGTGATTA--AA--A----AGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGATGTGCTTGA--C------ >LTR7B_chr1_Sltr_88__chr1_246418826246419358_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------GTAAGCCATCATATCC CCCGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------AACTACAAAACAACTGAAAATAGC-------------------------- ---------------------------------CAGTTCCTGCCTTAA----CCGATGAC ATT--------------------------------------------------------- -------------------------------GCACCATTGTGATTTGTTCCCTCCCCACC CTAAGTGAT-------CAATTGACTTTGTGACAATACCCCCTCCCCGCCCTTGCGATAAT GGACTTTGTGATATTCCTCCGCCC------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ --------------------------------------AG--------------AATGTA CTT-------------------------------TGTAATAT------------------ ---------------------------------------------------CCTCCC--- -------------CA-CACTT---------GAGAATGTACTTTGTAAGATCCACCCCCCA CTAGC-AAAAATTGCTCCTAACTCCAC--------------------------------- -----------------------CGCCTATCTC-AAACCTATAAGAACTAATGATAAT-- -------CC-C---ACCACCCTTTGCTGACTCTCTTTTCAGACTTAGCCCGCCTGCACCC AGGTGATTA--AA--A----AGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACACGTGTGA--CA----- >LTR7B_chr11_Sltr_234__chr11_2493371224934276__ TGTCAGGCCTCCGAGCCCAAG-----------------------CTAAGCCATCATATCC CTTGTGAC---------------------------------------------CTGCATG TATATATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAAATGAAG------------ ------------------------------------------------------------ ----------ATCCAGAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------CAGTTCCTGCTTTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC CTAACTGAT-------CAGCTGACTTTGTGACAATACACCTTCCCTGCCCTTGCGATAAT GTACTTTGTGATATTCCCCTACCCCTCCCCATCCTTGAGA--AG---------------- ------------------------------------------------------------ ------------GTACATTGTAA-TAT--------------------------------- ------------------------CTCCCCCCACCTTAAG--------------AAGGTA CTT-------------------------------TGTAATAT------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAAAATGTATTTTGTAAGATCCACCCCCTG CCCACAGAAAATTGCTCCTAACTCCAC--------------------------------- -----------------------CGCCCATCCC-AAACCTATAAGAACTAATGATAAT-- -------CC-C---ACCACCCTTTGATGACTCTCTTTTCGGACTCAACCCTCCTGCACCC AGGTAATTA--AA--A----AGATTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCC CTTCACACAGATGCGCATGA--C------ >LTR7B_chr20_Sltr_921__chr20_2351424523514797_+_ -GTGAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCTCG TATACATTCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------CAGTTCCTGCCTTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CTACCATTGTGATTTGTTCCTGCCCCACC CTAACTGAT-------CAATTGACTTTGTGACAACACACTCTCCCTGCCCTTGCGATAAT GTACTTTGCAATATTCCGCCACCCTTCCCCACCCTTGAGA--AG---------------- ------------------------------------------------------------ ------------GTACTTTGTAA-TAT--------------------------------- ------------------------CTCCCCCCACCTTAAG--------------AAGGTA CTT-------------------------------TGTAATAT------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAATGTATTTTGTAAGATCCACCCCCTG TCCACAAAAAATTGCTCCTAACTCCAC--------------------------------- -----------------------TGCCTATCCC-AAACCTATGAGAACTAATGATAAT-- -------CC-C---ACCACCCTTTGCCGACTCT--TTTCAGACTCAGCCCGCCTGCACCC AGGTGATTA--AA--A----AGCTTTATTGCTCACATAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGTGTGA--CA----- >LTR7B_chr13_Sltr_fr_421__chr13_5740528157405799_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCTCTCATAACC CCTGTGAC---------------------------------------------CTGCACA TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGGAGCAACTGAAG------------ ------------------------------------------------------------ ----------AACCACAAAA---------------------------------------- ------------------------------------------------------GATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATCTGTTCCTGCCCCACC CTAACTGAT-------CAATGGACTTTGTGACAATAAACCCTCGCTGCCCTTGCGATAAT GTGCTTTGTGTTATTCCCCTGCCCCTCCCCACCCTTGAGA--AG---------------- ------------------------------------------------------------ ------------GTACTTTGTAA-TAT--------------------------------- ------------------------CTCCCCCACCCTT-----------------AAGGTA CTT-------------------------------TGCAATAT------------------ ---------------------------------------------------TCTCCC--- -------------TG-CCCTT---------GAGAATGTATTTTGTGAGATCCACCCCCTG CCCGCAAAGAATTTCTCCTAACTCCAT--------------------------------- -----------------------TGCCTATCCC-AAACCTGTAAGAACTAATGATAAT-- -------CC-C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC GGGTGACTA--AA--A----AGCTTTATTGCTTACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGTGTGTAA--------- >LTR7B_chrX_2ltr_int_fr_1827__chrX_7126438071264926_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TATACATCCATA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------CAATTCCTGCCTTAA----CTGATGAC ATC--------------------------------------------------------- -------------------------------CCACCAT----------TCCTGCCCCACC CTAACTAAT-------CAATTGACTTTGTGACAATACTACCTCCCCGCCCTTGTGATAAT GTACTTTGTGATATTCCCCCACCCCTCCCCACCCTTGAGA--AG---------------- ------------------------------------------------------------ ------------GTACTTTGTAA-TAT--------------------------------- ------------------------CTCCCCTGCCCTTAAG--------------AAGGTA CTT-------------------------------TGTAATAT------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAATATACTTTGTAAGATCCACCCCCTA CCTGCAAAAAATTGCTCCTAACTCCAC--------------------------------- -----------------------TGCCTATCCC-AAACCTATAAGAACTAATGATAAT-- -------CC-C---ACCACCCTTTGCTGACTCCTTTTTCCGACTCAGCCCACCTGCACCC AGGTGAATA--AA--C----AGCCTTGTTGCTCACACAAAGCGTG---TT--GCTGGTCT CTTCACATGGACGTGCGTGA--CA----- >LTR7B_chr4_Sltr_1197__chr4_168976362168976949__ TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCATG TATACATCTAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAAGTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------CAGTTCCTGCCTTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC CTAACTGAT-------AAATTGACTTTGTGACAATACACCCTCCCCGCCCTTGCGATAAT ATACTTTGCGATATTCCCCCACCCCTCCACACCTTTGAGA--AG---------------- ------------------------------------------------------------ ------------GTACTTTGTAA-TAT--------------------------------- ------------------------CTTCCCTGCCCTTAAG--------------AAGGTA ATT-------------------------------TGTAATAT------------------ ---------------------------------------------------TCTTCC--- -------------CA-CCCTT---------GAGAATGTACT--ACAAGATCCACCCCCTG CCTACAAAAAATTGCTCCTAACTCCAC--------------------------------- -----------------------CTCCTATCCC-AAATCTATAAGAACTAATGATAAT-- -------CC-C---ACCACCCTTTGCTGACTCCTTTTTCAGACTCAGCCCACCTGCACGC AGGTGAATA--AA--C----AGCCTTGTTGCTCACACAAAGCCTG---TT--GGTGG-CT CTTCACATGGACGTGCATGA--C------ >LTR7B_chr6_Sltr_1481__chr6_8098114280981689_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------TGGTATG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGT-------------------------- ---------------------------------CAGTTCCTGCCTTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCAT----------TCCCATCCCACC CTAACTGAT-------CAATTGACTTTGTGACAATACACCCTCCATGCCCTTGCAATAAT GTACTTTGTGATATTCCCCTGCCCCTCCCCACCCTTGAGA--AG---------------- ------------------------------------------------------------ ------------GTACTTTGTAA-TAT--------------------------------- ------------------------CTCCCCGGCCCTTAAG--------------AAGGTA CTT-------------------------------TGTAATAT------------------ ---------------------------------------------------TCTCTC--- -------------CA-TCCTT---------GAAAATGTACTTTGTAAGATCCACTCCCTG CCTGCAAAAAATTGCTCCTAATTCCAC--------------------------------- -----------------------TGCCTATCCC-AAACCTATAAGAACTAATGATAAT-- -------CC-C---ACCACCCTTTGCTGACTCCTTTTTTGGACTCAGCCCGCCTGCACCA AGGTGAATA--AA--C----AGCCTTGTTGCTCACACAAAGTCTG---TT--GGTGGTCT CTTCACACGGACACATGTGA--CA----- >LTR7B_chrX_Sltr_1740__chrX_109576056109576612_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCAAG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------CAATTCCTGCCTTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC CTAACTGAT-------CAGTTGACTTTGTGACAATACACCTTCCCCGCCCTTGCGATAAT GTACTTTGTGACATTCCCCCGCCCCTCCCCACCCTTGAGA--AG---------------- ------------------------------------------------------------ ------------GTACTTTGTAA-TAT--------------------------------- ------------------------CTCTCCCGCCCTTAAG--------------AAGGTA CTT-------------------------------TGTAATAT------------------ ---------------------------------------------------TCTCCT--- -------------CA-CCCTT---------GAGAATGTACTCTGTAAGATCCACCCCCTG CCAGCAAAAAATTGCTCCTAACTCCAC--------------------------------- -----------------------TGCCTATCCC-AAACCTATAAGAACTAATGATAAT-- -------CC-C---ACCACCCTTTGCTGACTCCTTTTTCAGACTCAGCCCACCTGCACCC AGGTGAATA--AA--C----AGCCTTGTTGCTCACACAAAATCTG---TT--GGTGGTCT CTTCACACGGACACACGTGA--CA----- >LTR7B_chr19_2ltr_int_fr_712__chr19_58519405852530_+_ ---CAGGCCTCTGAGCCCAAG-----------------------CTAAGCCACCATCTCC CCTGTGAC---------------------------------------------CTGCACG TGTACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCAGAAAAAAAGTGAAAATAGC-------------------------- ---------------------------------CAGTTCCTGCCTTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGCGATTTGTTCCTGCCTCACC CTAACTGAT-------CAATTGACTTTGTGACAATACACCACC----CCCTTGCAATAAT GTACTTTGTGATATTCCCCCGCCCCTCGTCACCCTTGAGA--AG---------------- ------------------------------------------------------------ ------------GTGCTTTGTAA-TAT--------------------------------- ------------------------CTCCCCTGCCCTTAAG--------------AAGATA CTT-------------------------------TGTAATAT------------------ ---------------------------------------------------TCTCCT--- -------------CA-CCCTT---------GAGAATGTACTTTGTAAGATCTACCACCTG CCCGCAAAAAATTGCTCCTAACTCCAC--------------------------------- -----------------------TGCCTATCCC-AAACCTATAAGAACTAATGATAAT-- -------CC-C---ACCACCCTTTGCTAACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGATTA--AA--A----AGCTTTATTGCTCACACGAAGCCTG--TTT--GGTAGTCT CTTCACACGGGCGAGTGTGA--CA----- >LTR7B_chr3_Sltr_983__chr3_112784023112784506__ TGTCAGGTCTTTGAGCCCAAG-----------------------CTAAGCCA---TATCC CCCGTGAC---------------------------------------------CTTCACA TATACATCCA-------------------------------------------------- -----------------------------TGGCCTGAAGCAGCTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------CAGGTCCTGCCTTAA----CTTATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTAACTGAT-------CAATTGACTTTGTGACAATATACCG------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ --------------------------CCCCCACCCTTAAG--------------AACGTA CTT-------------------------------CGTAAGAT------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTAAGATATACCCCCTG CCGGCAAAAAATCGCTCCTAACTCCAC--------------------------------- -----------------------TGCCTATCCC-AAACCTATAAGAACTAATGATAAT-- -------CC-C---ACCACCCTTTGCTAACTCTCTTTTCAGACTCAGCCCGCCTGCACCC ATGTGATTA--AA--A----AGTTTTATTGCTCGCACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGATGTGCATGA--C------ >LTR7B_chr17_2ltr_int_fr_607__chr17_6879760568798097__ TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACA TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATTGC-------------------------- ---------------------------------CAGTTCCTGCCTTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCAGCATTGTGATTTGTTCCTGCCCCACT CTAACTGAT-------CAATTAACTTTGTGACAATACACC-------------------- ------------------------CTCCCCACCCTTGAGA--AG---------------- ------------------------------------------------------------ ------------GCACTTTGTAA-TAT--------------------------------- ------------------------CTACCCCGCCCTTAAG--------------AAGGTA CTT-------------------------------TGTAATAT------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTAAGATCCACCCGCTG CCCACAAAAAATTGCTCCTAACTCCAC--------------------------------- -----------------------TGCCTATCCC-AAACCTATAAGAACTAATGATAAT-- -------CC-C---ACCACCCTTTGCTGACACTCTTTTTGGACTCCGGCTGCCTGCACCC AGGTGATTA--AA--A----AGCTTTATTGCTCACACAAAGCCTG--TTT--GGTCGTCT CTTCACACGGACACACATGA--C------ >LTR7B_chr2_Sltr_904__chr2_8565764185658146__ TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGCC---------------------------------------------CTGCACG TATACACCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------CAGTTCCTGCCTTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC CTAACTGAT-------CAATTGACCTTGTGACAATACACC-------------------- ------------------------TTCCCCACCCTTGAGA--AG---------------- ------------------------------------------------------------ ------------GTGCTTTGTAA-TAT--------------------------------- ------------------------CTCCCCCACCCTTAAG--------------AAGGTA TTT-------------------------------TGTAATAT------------------ ---------------------------------------------------TCTCTC--- -------------CG-CCATT---------GAGAATGTGCTTTGTAAGATCCACCCCCTG CCCACA-AAAATTGCTCCTAACTCCAC--------------------------------- -----------------------CGCCTATCCC-AAACCTACAAGAACTAATGATAAT-- -------CC-C---ACCACCCTTTGCTGACTCT--TTTTGGACTCAGCCCACCTGCACCC AGGTGATTA--AA--A----AGCTTTATTGTTCACACAAAGCCTG--TTT--GGTAGTCT CTTCACAGGGAAGCATGTGA--C------ >LTR7B_chr5_Sltr_1314__chr5_138834780138835263__ TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTCAC---------------------------------------------CTGCATG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGCGAAAATAGC-------------------------- ---------------------------------CAGTTCCTGCCTTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCACTGCGATTTGTTCCTGCCCCACC CTAACTGAT-------AAATTGACTTTGTGACAATACACC-------------------- ------------------------CTCCCCACCCTTGAGA--AA---------------- ------------------------------------------------------------ ------------GTACTTTGTAA-TAT--------------------------------- ------------------------CTCCCCTGCCCTTAAG--------------AAGGTA CTC-------------------------------TGCAATAT------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GACAATGTACTTCATAAGATCCACCCCCTG CCCACA-AAAATTGCTCCTAACTCCAC--------------------------------- -----------------------TGCCTATCCC-AAACCTATAAGAACTAATGATAAT-- -------CC-C---GCCACCCTTCGCTGACTCT--TTTTGGACTCAGCCCGCCCGCACCC AGGTGATTA--AA--A----AGCTTTACTGCTCTCAAAAAGCCTG--TTT--GGCAGTCT CTTCACACAGAGGCAAGTGA--C------ >LTR7B_chr6_Sltr_1454__chr6_3387973633880220_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------TTAAGCCATCATATGC CCTGTGAT---------------------------------------------TTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------CTGTTACCGCCTTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCACTGTGATTTGTTCCTGCCCCACC CTAACTGAT-------CAATTGACTTTGTGACAATACACC-------------------- ------------------------CTCCCCACCCTTGAGA--AG---------------- ------------------------------------------------------------ ------------GTACTTTGTAA-TAT--------------------------------- ------------------------CTCCCCGACCCTTAGG--------------AAGGTG CTT-------------------------------GGTAATAT------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAATATACTTTGTAAGATCCACCCCCTG CCCACA-AAAATTGCTCCTAACTCCAC--------------------------------- -----------------------CACCTATTCC-AAACCTAGAAGAACTAATGAAAAT-- -------CC-C---ATCATCCTTTGCTGACTCT--TTTCGGACTCAGCCCAACTGCACCC AGGTGATTA--AA--A----AGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACAGGGAGGCGCATGA--CA----- >LTR7B_chr4_Sltr_1246__chr4_7756688577567370_+_ -GTCGGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACC TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATTCACAAATGAAGTGAAAATAGC-------------------------- ---------------------------------CAGTTCCTGCCTTAA----CTGATGAC ATC--------------------------------------------------------- -------------------------------CCACCATTGCGATTTGTTCCTGCCTCACC CTAACTGAT-------CAATTGACTTTGTGACAATACACC-------------------- ------------------------CTCTCCACCCTTGAGA--AG---------------- ------------------------------------------------------------ ------------TTACTTTGTAA-AAT--------------------------------- ------------------------CTCCCCA--CCTCAAG--------------AAGGTA CTT-------------------------------TGTAATAT------------------ ---------------------------------------------------CCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTAAGATCCACCCCCTG CCCACAAAAAATTGCTCCTAACTCCAC--------------------------------- -----------------------CGCCTATCCC-AAACCTATAAGAACTAATGATAAT-- -------CC-C---ACCACCCTTTGCTGACTCTCTTTTCAGACTCAGCCCACTTGCACCC AGGTGATTA--AA--A----AGTTTTACTGCTCACACAATGCCTA--TTT--GGTGGTCT CTTCACATGGACGCGCACAA--CA----- >LTR7B_chr6_Sltr_1429__chr6_156975790156976275__ TGTCAGGCCTCTGAGCCCAAG-----------------------TTAAGCCGTCATATCC CCTGTGAC---------------------------------------------CTGCACA TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATTCACAAA---AGTGAAAATAGC-------------------------- ---------------------------------CAGTTCCTGCCTTAA----CTGATGCC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC CTGACTGAT-------CAATTGACTTTGTGACAATACACC-------------------- ------------------------CCCTCCGCCCTTGCGT--AT---------------- ------------------------------------------------------------ ------------GTACTTTATGA-TAT--------------------------------- ------------------------CCCCCGT--CCTTGTG--------------AATGTA CTT-------------------------------TGTAACAC------------------ ---------------------------------------------------CCGCTC--- -------------CA-CCCTT---------GAGAAGGTACTTTGTAAGATCCTCCCCCTG CCCACAAAAAACTGCTCCCAACTCCAC--------------------------------- -----------------------CGCCTATCAC-AAACCTATAAGAACTAATGATAAT-- -------CC-C---ATCACCCTTTGCTGACTCT----TCGGACTCAGCCCGCCTGCACCC AGGTGATAA--AA--A----AGCTTTACTGTTCACGTAAAGCTTG--CCT--GGTGGTCT CTTCACATGGACGCTCGTGA--C------ >LTR7B_chr8_Sltr_1632__chr8_6351125763511736_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCTATCGTATCC CC-GTGAC---------------------------------------------CTGCTTG TATACACCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------CAGGTCCTGCCTTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTTTGATTTGTTCCTGCCCCACC CTAATTGAT-------CAATTGACTTTCTGACAATACACC-------------------- ------------------------CTCCCCACCCTT-AAA--AG---------------- ------------------------------------------------------------ ------------GTACTTTGTAA-TAT--------------------------------- ------------------------CTCCCCCACCCTTAAG--------------AAGATA CTT-------------------------------TGTAATAT------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTAAGATCTAC-CCCTG CCCACAAAAAATTGCTCCTAACTCCAC--------------------------------- -----------------------CACCTATCCC-AAACCTATAGGAACTAATGATAAT-- -------TC-C---ACCATCCTTTGCTGACTCCTTTTTTGGACTCAGCCCACCTACACCC AGGTGA-----AA--T----AGCCTTGCTGCTCACACAAAGCCTG--TT---GGTGGTCT CTTCACATGGACGTGCATGA--CA----- >LTR7B_chr13_Sltr_fr_416__chr13_5431103054311436__ TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCAGTGAC---------------------------------------------CCGCACG TATATATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACA---GAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGGTTGGTTTCTGCCCCACC CTAA-------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------T----------------------------------- ------------------------CTCCCCCACCCTTACA--------------AAGTTT CTT-------------------------------TGTAA--T------------------ ---------------------------------------------------TCTCCT--- -------------TA-TCCTT---------GAGGATGCACTTTGTGAGATCCACCCCC-G CCCCCAAAACATTGCTCTTAACTCCAC--------------------------------- -----------------------CGCCTATCCCAAAACTTATAAGAACCAACGATAAT-- -------CC-C---ACCACCCTTTGCTGACTCTCTTTTCAGACTCAGCCTGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT TTTCACACGGACACGCATG---------- >LTR7B_chr20_Sltr_fr_917__chr20_1821482618215221__ TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCAGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACA---GAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCCGCCCCACC CTAA-------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------------CTGATC--------------AATATT CTT-------------------------------TATAA--T------------------ ---------------------------------------------------CTTTAT--- -------------AA-CCCTT---------AAGAATGTACTTTGTGAGAGCCACCCCC-T CCCCCAAAACATTGCTCTTAACTCCAT--------------------------------- -----------------------CGCCTATCCTAAAACCTATAAGAACCAATGATAAT-- -------CT-C---ACCACCCTTTGCTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAATAGCCGTGTTGCTCACACAAAGCCTG--TTT--GGTGGTGT CTTCACATGGACACACGTG---------- >LTR7B_chr15_Sltr_496__chr15_2598678625987139_+_ -GTCAGGCCTCCGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATATC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCATCACTGTGATTTTTTCCTGCCCCACT CTAACTGAT------ACAAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------ATA--------TT----------------------------------- ------------------------CTCCCCCGCCCTTAAG--------------AAGGTA CTT-------------------------------TGTA---------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ -----------------------TGCCTATCCC-AAACCTGTAAGAACTAATGATAAT-- -------CC-C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCTTCTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGATGCACATGA--CA----- >LTR7B_chr1_Sltr_23__chr1_160906111160906495__ TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCAACATATCC CCTGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGG-------------------------- ---------------------------------C----------TAAA----CTGATGGC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC CTAACTGAT------ATGAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------ATA--------TT----------------------------------- ------------------------CTCCCCTGCCCTTAGG--------------AAGGTA CTT-------------------------------TGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CG-CCCTT---------GGGAATGTACTTTGTA-------------- ------------------------------------------------------------ -----------------------TGCCTATCCC-AAACCTATAAGAACTAATGATAAT-- -------CC-C---ACCACCTTTTGCTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC AGGTGA-----T---TAAAAAGCTTTATTGCTCACAT-AAGCCTG--TTT--GGTGGTCT CTTCACACGGACGTGCGTGA--C------ >LTR7B_chr11_Sltr_212__chr11_107878985107879367_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG AATACATCCAGA------------------------------------------------ -----------------------------TGGCCTAAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACACAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC GTT--------------------------------------------------------- -------------------------------CCATCACT--GATTTGTTCCTGCCCCACC CTAACTGAT------AGGAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------ATA--------TT----------------------------------- ------------------------CTCCCCTGCCCTTAAG--------------AAGGTA CTT-------------------------------TGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CG-CCCT---------------------------------------- ------------------------------------------------------------ -----------------------------------------TAAGAACTAATAATAAT-- -------CC-C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----T---TAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATGA--CA----- >LTR7B_chr3_Sltr_1053__chr3_180130863180131214_+_ -GTCAGTTCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTAATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC CTAATTAAT------ACTAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------ATA--------TT----------------------------------- ------------------------CTCCCCCGCCCTTAAG--------------AA---- ------------------------------------------------------------ ------------------------------------------------------------ -----------------------------------TGTACTTTGTA-------------- ------------------------------------------------------------ -----------------------TGCCTATCCC-AAACCTATAAGAACTAATGATAAT-- -------CT-C---ACCACCTTTTGCTGACTCTTTTTTCGGA--CAGCCCGCCTGCACCC AGGTAA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCATACGGACGCGCATGA--CA----- >LTR7B_chr16_Sltr_545__chr16_2407896724079320_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACGGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTAATGAC GTT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC CTAACTGAT------ACGAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------ATA--------TT----------------------------------- ------------------------CTCCCCCGCCCTTAAG--------------AAGGTA CTT-------------------------------TGTA---------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ -----------------------CACCTATCCC-AAACCTATAAGAACTAATGATAAT-- -------CC-C---ATCATCCTTTGCTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGCTGCTCCCACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACACACGTGA--CA----- >LTR7B_chr17_Sltr_598__chr17_4194334241943725__ TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCT CCTGTGAC---------------------------------------------CTGCACG TATACAACCAGA------------------------------------------------ -----------------------------TGGCCCGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------AATCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTGCTCCACC C----TGAT------ACGAT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------ATA--------TT----------------------------------- ------------------------CTCCCTCACCCTCAAG--------------AAGGTA CTT-------------------------------TGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CT-CCCTT---------AAGAATGTATTTTGTA-------------- ------------------------------------------------------------ -----------------------CACCTATCCC-AAACCTATAAGAACTAATGATAAT-- -------CC-C---ACCACCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACACGTGTGA--C------ >LTR7Y_chr10_2ltr_int_fr_175__chr10_7681822176818660_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGTCATCGCATCC CCTGGGAC---------------------------------------------TTGCAGG TATATGCCCACA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCATCATTGTGATTTGTTCCTGCCCCACC CTAACTAATCAATGTACTTT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------AT----------------------------------- ------------------------CTCCCCCACCCTTAAG--------------AAGGTT CTT-------------------------------TGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAAAGTGTACTTTGTG-------------- ---------------------------AG-ATCCACCCC-TGCCCACCAGAGAACAA--C CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-CATCCTATAA-----------AATG- GCCCCACCA-CT--ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACAC-GACGCGCATGA--AA----- >LTR7Y_chrX_2ltr_int_fr_1791__chrX_45458714546320__ TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCATG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------AATCACAAAAGAAGTGAATATGAC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC CTAACTGATCAATGTACTTT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------AT----------------------------------- ------------------------CTCCCCCACCCTTAAG--------------AAGGTC CTT-------------------------------TGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTG-------------- ---------------------------AG-ATCCACCCC-TGCCCACCAGAGAACAA--C CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG- GCCCCACCC-CT--ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGCACATGA--A------ >LTR7Y_chr10_2ltr_int_fr_145__chr10_120844932120845403_+_ -GTCAGGCCTCTGAGCCCAGG-----------------------CCAGGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTAAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAACAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTGCCCCACT CTAACTGATCAATGTACTTT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------AT----------------------------------- ------------------------CTCCCCCACCCTTAAG--------------AAGGTA CTT-------------------------------TGTAG--T------------------ ---------------------------------------------------CTCCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTG-------------- ---------------------------AG-ATCCACCCC-TACCCACCAGAGAACAA--C CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG- GCCCCACCC-CT--ATCTCCCTTCGCTGACTCTCTTTTCGGACTTAGCCCACCTGCACCC ATGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACCGACGCACATGA--A------ >LTR7Y_chr15_Sltr_500__chr15_3525466735255102__ TGTCAGGCCTCTGAGCCCAG----------------------------GCCATCGCATCC CCTGTGGC---------------------------------------------TTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTAAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAACAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC CTAACTGATCAATGTACTTT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------GT----------------------------------- ------------------------CTCCCCCACCCTTAAG--------------AAGGTT CTT-------------------------------TGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTG-------------- ---------------------------AG-ATCCACCCC-TGCCCACCAGAGAACAA--C CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG- GCCCCACCC-CT--ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCTTTATTGCTCACACGAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATGA--A------ >LTR7Y_chr3_2ltr_int_fr_961__chr3_12446211245092__ TGTCAGGCCTCTGAGCCCAGA-----------------------CCAGGCCATCGCATCC CCTGTAAC---------------------------------------------TTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAACAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTGCCCCATC CTAACTGATCAATGTACTTT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------AT----------------------------------- ------------------------CTCCCCCACCCTTAAG--------------AAGGTA CTT-------------------------------TGTAG--T------------------ ---------------------------------------------------CTCCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTG-------------- ---------------------------AG-ATCCACCCC-TGCCCACCAGAGAACAA--C CCCCTTTGACTGTAATTTTCCATCACCTTCCCA-AATCCTATAA-----------AACA- GCCCCACCC-CT--ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGCGGTCT CTTCACACAGACACGCATGA--A------ >LTR7Y_chr22_Sltr_933__chr22_2050840220508834__ TGTCAGGCCTCTGAGCCCAGG-----------------------CCAGGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAACAGC-------------------------- ---------------------------------C----------GTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC CTAACTGATCAATGTACTTT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------AT----------------------------------- ------------------------CTCCCCCACCCTTAAG--------------AAGGTT CTT-------------------------------TGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTG-------------- ---------------------------AG-ATCCATCCC-TGCCCACCAGAGAACAA--- -----TTGACT--AATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG- ACCCCACCC-CT--ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATGA--A------ >LTR7Y_chr22_2ltr_int_931__chr22_1661130816611747_+_ -GTCAGGCCTCTGAGCCCAGG-----------------------CCAGGCCATCGCATCC C--GTGAC---------------------------------------------TTGCACA TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAATTGAAG------------ ------------------------------------------------------------ ----------ATCCACAGAAGAAGTAAAAACAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC CTAACTGATCAATGTACTTT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------AT----------------------------------- ------------------------CTCCCCCACCCTTAAG--------------AAGGTT CTT-------------------------------TGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTG-------------- ---------------------------AG-ATCCACCCC-TGCCCACCAGAGAACAA--C CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACA- GCCCCACCC-CT--ATCTCCCTTCACTGACTCTCTTTTCAGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCTTTATTGCTCACACGAAGCCTG--TTT--GGTGGTCT CTTCACACGGATGCGCATGA--AA----- >LTR7Y_chr4_2ltr_int_fr_1244__chr4_9202577292026242_+_ -GTCAGGCCTCTGAGCCCAGG-----------------------CCAGGCCATCGCATCC CCTGTGAC---------------------------------------------GTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAACAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCATGACTGTGATTTGTTCCTGCCCCACC CTAACTGATCAATGTACTTT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------AT----------------------------------- ------------------------CTCCCCCACCCTTAAG--------------AAGTTT CTT-------------------------------TGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTG-------------- ---------------------------AG-ATCCACCCC-TGCCCACCAGAGAACAA--C CCCCTTTGACTGTAATTTTCCATTGCCTTCCCA-AATCCTATAA-----------AATG- GCCCCACCC--C--ATCTCCCTTTGCTGACTGTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGATGGGTATGA--AA----- >LTR7Y_chr9_2ltr_int_fr_1692__chr9_8270584782706286__ TGTCAGGCCTCTGAGCCCAGG-----------------------CCAGGCCTTCGCATCT -CTGTGAC---------------------------------------------TTGCATG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTAAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAACAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC CTAACTGATCAATGTACTTT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------AT----------------------------------- ------------------------CTCCCCCACCCTTAAG--------------AAGTTT CTT-------------------------------TGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTG-------------- ---------------------------AG-ATCCACCCC-TGCCCACCAGAGAACAA--C CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACC- GCCCCACCC-TT--ATCTCCCTATGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGATGCACATGA--A------ >LTR7Y_chr11_Sltr_210__chr11_130569681130570121__ TGTCAGGCCTCTGAGCCCAGG-----------------------CCAGGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAACAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC CTAACTGATCAATGTACTTT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------AT----------------------------------- ------------------------CTCTCCCACCCTTAAG--------------AAGGTT CTT-------------------------------TGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CTCTT---------GAGGATGTACTTTGTG-------------- ---------------------------AG-ATCCACCCC-TGCCCACCAGAGAACAA--C CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG- GCCCCACCC-CT--ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCTTTATTGGTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCATATGA--A------ >LTR7Y_chr11_2ltr_int_fr_217__chr11_2056787520568314_+_ -GTCAGGCCTCTGAGCCGAGG-----------------------CCAGGCCATGGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAAATGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAACAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC CTAACTGATCAATGTACTTT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------AT----------------------------------- ------------------------CTCCCCCACCCTTAAG--------------AA-GTT CTT-------------------------------TGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CTCTT---------GAGAATGTACTTTGTG-------------- ---------------------------AG-ATGCAACCC-TGCCCACCAGAGAACAA--C CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG- GCCCCACCC-CT--ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACACGTATGA--AA----- >LTR7Y_chr11_2ltr_int_fr_282__chr11_9530941995309890_+_ -GTCAGGCCTCTGAGCCCAGG-----------------------CCAGGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAACAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTGCCCCACG CTAACTGATCAATGTACTTT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------AT----------------------------------- ------------------------CTCCCCCACCCTTAAG--------------AAGGTT CTT-------------------------------TGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTG-------------- ---------------------------AG-ATCCACCCC-TGCCCACCAGAGAACAA--C CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG- GCCCCACCC-CT--ATCTCCCTTCACTGACTCTGTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGCGCGTGA--AA----- >LTR7Y_chr19_2ltr_int_fr_698__chr19_55485765549016_+_ -GTCAGGCCTCTGAGCCCAGG-----------------------CCAGGCCATCGCATCC CCTGTGAC---------------------------------------------TGGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAACAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC CTAACTGATCAATGTACTTT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------GT----------------------------------- ------------------------CTCCCCCACCCTTAAG--------------AAGGT- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------GAGAATGTACTTTGTG-------------- ---------------------------AG-ATCCACCCC-TGCCCACCAGAGAGCAA--C CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG- GCCCCACCC-GT--ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCGGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGCTTCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGACGCGCATGA--AA----- >LTR7Y_chr3_Sltr_1030__chr3_187185155187185626_+_ -GTCAGGCCTCTGAGCCCAGG-----------------------CCACGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAACAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC CTAACTGATCAATGTACTTT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------AT----------------------------------- ------------------------CTCCCCCACCCTTAAG--------------AAGGTT CTT-------------------------------TGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTG-------------- ---------------------------AG-ATCCACCCC-TGCCCACCAGAGAGCAA--C CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATCA-----------AACG- GCCCCACCC-CT--ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATGA--AA----- >LTR7Y_chr14_Sltr_452__chr14_3539623235396703_+_ -GTCAGGCCTCTGAGCCCAGG-----------------------CCAGGCCGTCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAACAGC-------------------------- ---------------------------------C----------TCAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC CTAACTGATCAATGTACTTT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------AT----------------------------------- ------------------------CTCCCCCACCCTTAAG--------------AAGGTT CTT-------------------------------TGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTG-------------- ---------------------------AG-ATCCACCCC-TGCCCACCAGAGAACAA--C CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG- GCCCCACCC-CT--ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATTTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGTGCATGA--AA----- >LTR7Y_chr14_2ltr_int_fr_449__chr14_3125067031251138__ TGTCAGGCCTCTGAGCCCAGG-----------------------CCAGGCCATCGCACCC CCTGTGAC---------------------------------------------TTGCACG TATACATCCAGA------------------------------------------------ -----------------------------CGGCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAACAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC CTAACTGATCAATGTACTTT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------AT----------------------------------- ------------------------ATCCCCCACCCTTAAG--------------AAGGTT CTT-------------------------------TGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTG-------------- ---------------------------AG-ATCCACCCC-TGCCCACCAGAGAACAA--C CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AATG- GCCCCACCC-CT--ATCTCCCTTCGCTGACTGTCTTTTCGGACTCAGCCTGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACAGGGACACGCATGA--A------ >LTR7Y_chr1_Sltr_17__chr1_1324250013242971__ TGTCAGGTCTCTGAGCCCAAG-----------------------CCAACCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAACAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC CTAACTGATCAATGTACTTT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------AT----------------------------------- ------------------------CTCCCCCACCCTTAAG--------------AAGGTT CTT-------------------------------TGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTG-------------- ---------------------------AG-ATCCACCCC-TGCCCACCAGAGAACAA--C CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AATG- GCCCCAACC-CT--ATCTCCCTTCACTGACTCTCTTGTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCGTATTGCTCACGCAAAGCCTG--TTT--GGTGGTCT CTTAACAAGGACGCGCATGA--A------ >LTR7Y_chr1_Sltr_fr_34__chr1_197851433197851830__ ------------------------------------------------------------ -CTGCGAC---------------------------------------------TTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAATAAGTAAAAACAGC-------------------------- ---------------------------------C----------TTAA----CTGACGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC CTAACTGATCAATGTACTTT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------AT----------------------------------- ------------------------CTCCCCCACCCTTAAG--------------AGGGTT CTT-------------------------------TGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CTCTT---------GAGAGTGTGCTTTGTG-------------- ---------------------------AG-ATCCACCCC-TGCCCACCAGAGAACAA--C CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AATG- GCCCCACCC-CT--ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACAAAA--------------------- ----------------------------- >LTR7Y_chr7_2ltr_int_fr_1491__chr7_113238838113239308__ TGTCGGGCCTCTGAGCCCAGG-----------------------CCAGGCCATCGCATCT CCTGTGAC---------------------------------------------TTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAACAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTACCCCACC CTAACTGGTCAATGTACTTT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------AT----------------------------------- ------------------------CTCCCCCACCCTTAAG--------------AAGGTT CTT-------------------------------TGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTG-------------- ---------------------------AG-CTCCACCCC-TGCCCACCAGAGAACAA--G CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AATG- GCCCCACCC-C---ATCTCCCTTCGCTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGTACACGCATGA--A------ >LTR7Y_chr16_2ltr_int_fr_560__chr16_8627809586278535_+_ -GTCAGGCCTCTGAGCCCAGG-----------------------CCAGGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG CATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAACAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC CTAGCTGATCAATGTACTTT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------AT----------------------------------- ------------------------CTCCCCCACCCTTAAG--------------AAGGTT CTT-------------------------------TGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTG-------------- ---------------------------AG-ATCCACCCC-TGCCCAGCAGAGAACAA--C CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG- GCCCCACCC-CT--ATCTCCCTTCCCTGACTCTCTTTTCGGACGCAGCCCGCCTGCGCCC AGGTGA-----AA--TACACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGGCT CTTCACACGGACACGTATGA--A------ >LTR7Y_chr5_2ltr_int_fr_1318__chr5_180420071180420511__ TGTCAGGCCTCTGAGCCCAGG-----------------------CCAGGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCAGG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAACAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC CTAACTGATCAATGTACTTT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------AT----------------------------------- ------------------------CTCCCCCACCCTTAAG--------------AAGGTT CTT-------------------------------TGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTGGTG-------------- ---------------------------AG-ATCCACCCC-TGCCCACCAGAGAACAA--C CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG- GCCCCACCC-CT--ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCGCCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGATGCGCATGA--A------ >LTR7Y_chrX_2ltr_int_fr_1718__chrX_109870422109870862__ TGTCAGGCCTCTGAGCCCAGG-----------------------CCAGGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAACAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTGGTTCCTGCCCCACC CTAACTGATCAATGTACTTT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------GT----------------------------------- ------------------------CTCCCCCACCCTTAAG--------------AAGGTT CTT-------------------------------TGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTG-------------- ---------------------------AG-ATCCACCCC-TGCCCACCAGAGAACAA--C CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AATG- GCCCCACCC-CT--ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCTTG--TTT--GGTGGTCT CTTCACACGGACACGCATGA--A------ >LTR7Y_chr10_Sltr_148__chr10_133004175133004613_+_ -GTCAGGCCTCTGAGCCCAGG-----------------------CCAGGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAACAGC-------------------------- ---------------------------------C----------TTAA----CTGGTGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC CTAACTGATCAATGTACTTT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------GT----------------------------------- ------------------------CTCCCCCACCCTTAAG--------------AAGGTT CTT-------------------------------TGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTG-------------- ---------------------------AG-ATCCACCCC-TGCCCACCAGAGAACAA--C CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG- GCCCCACCC-CT--AGCTCCCTTTGCTGA--CTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATGA--AA----- >LTR7Y_chr3_Sltr_998__chr3_1600014216000613_+_ -GTGAGGCCTCTGAGCCCAGG-----------------------CCAGGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACATCCCGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAACAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC CTAACTGATCAATGTGCTTT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------GT----------------------------------- ------------------------CTCCCCCACCCTTAAG--------------AAGGTA CTT-------------------------------TGTAG--T------------------ ---------------------------------------------------CTCCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTG-------------- ---------------------------AG-ATCCACCCC-TGCCCACCAGAGAACAA--C CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG- GCCCCACCC-CT--ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATGA--AA----- >LTR7Y_chr4_Sltr_1192__chr4_174488110174488550_+_ -GTCAGGCCTCTGAGCCCAGG-----------------------CCAGGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAACCAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC CTAACTGATCAATGTACTTC---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------AT----------------------------------- ------------------------CTCCCCCACCCTTAAG--------------AAGGTT CTT-------------------------------TGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTG-------------- ---------------------------AG-ATCCACCCC-TGCCCACCAGAGAACAA--C CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG- GCCCCACCC-CT--ATCTCCCTTCGCTGACTCTCTTTTCGGATTCAGCCCACCTGCACCG AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATGA--AA----- >LTR7Y_chr12_2ltr_int_fr_365__chr12_7008529070085729_+_ -GTCAGGCCTCTGAGCCCAGG-----------------------CCAGGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGACTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAACAGC-------------------------- ---------------------------------C----------TTAA----ATGATGAC ACT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC CTAACTGATCAATGTACTTT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------AT----------------------------------- ------------------------CTCCCCCACCCTTAAG--------------AAGGTT CTT-------------------------------TGCAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTG-------------- ---------------------------AG-ATCCACCCC-TGCCCACTAGAGAACAA--C CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AATG- GCCCCACCC-CT--ATCTCCCTTC-CTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCACACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGTATGA--AA----- >LTR7Y_chr14_Sltr_fr_444__chr14_2319778723198158__ TGTCAGGCCTCTGAGCCCAGG-----------------------CCAGGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TACACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAACAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC CTAACTGATCAATGTACTTT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------AT----------------------------------- ------------------------CTCCCCCGCCCTTA---------------------- ------------------------------------------------------------ ------------------------------------------------------------ -------------------------------AGAATGTACTTTGTG-------------- ---------------------------AG-ATCCCCGCC-TGCCCACCAGAGAACAA--C CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATGA-----------AATG- GCCCCACCC-CT--ATCTCCCTTCGCTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCAAA------------------------ -------------------A--AA----- >LTR7Y_chr20_Sltr_911__chr20_4242766142428101_+_ -GTCAGGCCTCTGAGCCCAGG-----------------------CCAGGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAACAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC CTAACTGATCAATGTACTTT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------ATA--------AT----------------------------------- ------------------------CTCCCCCACCCTTAAG--------------AAGGTT CTT-------------------------------TGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-GCCTT---------GAGAATGTACTTTGTG-------------- ---------------------------AG-ATCCACTCC-TGCCCACGAGAGAACAA--C CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AATG- GCCCCACCC-CT--ATCTCCCTTCTCTGACTCTCTTTTGGGACTCAGCCCTCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CCTCACACGGACGCACATGA--AA----- >LTR7Y_chr3_2ltr_int_fr_970__chr3_128959818128960251_+_ -GTCAGGCCTCTGAGCCCAGG-----------------------CCAGGCCATCACATCC CCTGTGAC---------------------------------------------TTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAATAAAAACAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCCGCCCCACC CTAACTGATCAATGTACTTT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------GT----------------------------------- ------------------------CTCCCCCACCCTTAAG--------------AAGGTT CTT-------------------------------TGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CTCTT---------GAGAATGTATTTTGTG-------------- ---------------------------AG-ATCCACCCC-TGCCCACCAGAGAACAA--C CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG- GCCCCAC----------TCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATGA--AA----- >LTR7Y_chr7_2ltr_int_fr_1529__chr7_2602936926029809__ TGTCAGGCCTCTGAGCCCAGG-----------------------CCAGGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCATG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTAAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAACAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC CTAACTGATCAATGTACTTT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------AT----------------------------------- ------------------------CTCCCCCACCCTTAAG--------------AAGGTT CTT-------------------------------TGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAATATACTTTGTG-------------- ---------------------------AG-ATCCACCCC-TGCCCACCAGAGGACAA--C CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG- GCCCCACCC-GT--ATCTCCCTTCGCTGACTCTCTTATTGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGACGCGCATGA--A------ >LTR7Y_chr7_2ltr_int_fr_1537__chr7_3430513234305572__ TGTCAGGCCTCAGAGCCCAGG-----------------------CCAGGCCATTGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTAAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAACAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC CTAACTGATCAATGTACTTT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------AT----------------------------------- ------------------------CTCCCCCACCCTTAAG--------------AAGGTT CTT-------------------------------TGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTG-------------- ---------------------------AG-ATCCACCCC-TGCCCACCAGAGAACAA--C CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AATG- GCCCCACCC-CT--ATCTCCCTTCCCTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACAGGGACGCACATGA--A------ >LTR7Y_chr11_Sltr_240__chr11_4984278949843259__ TGTCAGGCCTCTGAGCCCAGG-----------------------CCAGGCCATTGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTAAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAACAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCACTGTGATTTGTTCCTGCGCCAAC CTAACTGATAAATGTACTTT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------AT----------------------------------- ------------------------CTCCCCCACCCTTAAG--------------AAGGTA CTT-------------------------------TGTAG--T------------------ ---------------------------------------------------CTCCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTG-------------- ---------------------------AG-ATCCACCCC-TGCCCACCAGAGAACAA--C -CCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AATG- GCCCCACCC-CT--ATCTCCCGTTGCTGACTCGCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAACCATGTTGCTCACACTAAGCCTG--TTT--GGTGGTCT CTTTGCACAGATGCACATGA--A------ >LTR7Y_chr18_Sltr_618__chr18_5147176751472201__ TGTCAGGCCTCTGAGCCCAGG-----------------------CCAGGCCATTGCATCC CCTGTAAC---------------------------------------------TTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTAAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAA---AAGTAAAAACAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTTCTGCCCCACC CTAACTGATCAATGTACTTT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------AT----------------------------------- ------------------------CTCCCCCACCCTTAAG--------------AAGGTT CTT-------------------------------TGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTG-------------- ---------------------------AG-ATCCACCCC-TGCCCACCAGAGAA-----C CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATGCTATAA-----------AACG- GCCCCACCC-CT--ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGATGCGCATGA--A------ >LTR7Y_chr20_Sltr_905__chr20_3414474134145181__ TGTCAGGCCTCTGAGCCCAGG-----------------------CCAGGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATATATCCAGA------------------------------------------------ -----------------------------TGGCCTAAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAACAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC CTAACTGATCAATGTACTTT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------AT----------------------------------- ------------------------CTCCCCCACCCTTAAG--------------AAGGTT CTT-------------------------------TGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTG-------------- ---------------------------AG-ATCCACCCC-TGCCCACCAGAGAAAAA--C CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATGCTATAA-----------AACG- GCCTCACCC-CT--ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATGA--A------ >LTR7Y_chr8_Sltr_fr_1601__chr8_4698691446987352_+_ -GTCAGGCCTCTGAGCCCAGG-----------------------CCAGGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTAAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAACAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC CTAACTGATCAATGTACTTT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTT--------TT----------------------------------- ------------------------CTCCCCCACCCTTAAG--------------AAGGTT CTT-------------------------------TGTAA--T------------------ ---------------------------------------------------TGTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTG-------------- ---------------------------AG-ATCCACCCC-TGCCCACCAGAGAACAA--A CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATGCTATAA-----------AACG- GCCCCACCC-CT--ATCTCCCTTTGCTGACTCTCTTGTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAGACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGTGCATGA--------- >LTR7Y_chr7_2ltr_int_fr_1535__chr7_3284309932843539__ TGTCAGGCCTCTGAGCCCAGG-----------------------CCAGGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACA TATACATCCATA------------------------------------------------ -----------------------------TGGCCTAAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAACAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC CTAACTGATCAATGTACTTT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------AT----------------------------------- ------------------------CTCCCCCACCCTTAAG--------------AAGGTT CTT-------------------------------TGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CACTT---------GAGAATGTACTTTGTG-------------- ---------------------------AG-ATCCACCCC-TGCCCACCAGAGAACAA--C CCCCTTTGATTGTAATTTTCCATTACCTTCCCA-AGTCCTATAA-----------AACG- GCCCCACCC-TT--ATCTCCCTATGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGCGCATGA--A------ >LTR7Y_chr10_Sltr_fr_192__chr10_9733891597339356_+_ --------CTCTGAGCCCAGG-----------------------CCAGGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTAAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAACAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC CTAACTGATCAATGTACTTT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------AT----------------------------------- ------------------------CTCCCCCACCCTTAAG--------------AAGGTT CTT-------------------------------TGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTG-------------- ---------------------------AG-ATCCACCCC-TGCCCACCAGAGAACGA--C CCCCTTTGGCTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACA- GCCCCACCC-TT--ATCTCCCTACGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCACATGA--AA----- >LTR7Y_chr21_Sltr_928__chr21_4142513241425578__ TGTCAGGCCTCGCATCCCAGG-----------------------CCAGGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCAGG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTAAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAACAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC CTAACTGATCAATGTACTTT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------AT----------------------------------- ------------------------CTTCCCCACCCTTAAG--------------AAGGTT ATT-------------------------------TGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTG-------------- ---------------------------AG-ATTCACCCC-TGCCCACCAGAGAACAA--C CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG- GCCCCACCC-CT--ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TACACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGCACATGA--A------ >LTR7Y_chr22_Sltr_946__chr22_4410847144108911__ TGTCAGGCCTCTGAGCCCAGG-----------------------CCAGGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTAAATTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAACAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCAGCATTGTGATTTGTTCCTGCCCCACC CTAACTGATCAATATACTTT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------AT----------------------------------- ------------------------CTCCCCCACCCTTAAG--------------AAGGTT CTT-------------------------------TGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTG-------------- ---------------------------AG-ATCCACCCC-TGCCCACCAGAGAACAA--C CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG- GCCCCACCC-CT--ATCTCCCTTCGCTGACTGTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCACATGA--A------ >LTR7Y_chr7_2ltr_int_fr_1498__chr7_121315380121315819_+_ -GTCAGGCCTCTGAGCCCAGG-----------------------CCAGGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCATG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTAAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAACAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCGCCATTGTGATTTGTTCCTGCCCCACC CTAACTGATCAATGTACTTT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------AT----------------------------------- ------------------------CTCCCCCACCCTTAAG--------------AAGGTT CTT-------------------------------TGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTG-------------- ---------------------------AG-ATCCACCCC-TGCCCACCAGAGAACAA--C CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AAGG- GCCCCACCC-CT--ATCTCCCTTC-CTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATATTGCTCACACAAAGGCTG--TTT--GGTGGTCT CTTCACATGGACGCGCATGA--AA----- >LTR7Y_chr15_Sltr_511__chr15_5953468859535159__ TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CTTGTGAC---------------------------------------------TTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTAAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAACAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCGTTGTGATTTGTTCCTGCCCCACC CTAACTGATCAATGTACTTT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------AT----------------------------------- ------------------------CTCCCCCACCCTTAAG--------------AAGGTT CTT-------------------------------TGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTG-------------- ---------------------------AG-ATCCACCCC-TGCCCGCCAGAGAACAA--C TCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AATG- GCCCCACCC-CT--ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGCGTATGA--A------ >LTR7Y_chr22_Sltr_934__chr22_2663197326632439__ TGTCAGGCCTCTGAGCCCAAG-----------------------CCA-----TCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAACAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTGCCCCACC CTAACTGATCAATGTACTTT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------AT----------------------------------- ------------------------CTCCCCCACCCTTAAG--------------AAGGTT CTT-------------------------------TGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAAAGTACTTTGTG-------------- ---------------------------AG-ATCCACCCC-TGCCCACCAGAGAACAA--C CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AATG- GCCCCACCC-CT--ATCTCCCTTCGCTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCGTGA--A------ >LTR7Y_chr4_2ltr_int_fr_1165__chr4_152746707152747147__ TGTCAGGCCTCTGAGCCCAGG-----------------------CCAGGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACATCCAAA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTAAAAACAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- -------------------------------CCACCATTGTGATTTGTTCCTGCCCAACC CTAACTGATCAATGTACTTT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------GTA--------AT----------------------------------- ------------------------CTCCCCCACCCTTAAG--------------AAGGTT CTT-------------------------------TGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CTCTT---------GAGAATGTACTTTGTG-------------- ---------------------------AG-ATCCACCCC-TGCCCACCAGAGAACAA--C CCCCTTTGACTGTAATTTTCCTTTACCTTCCCA-AATCCTATAA-----------AATG- GCCCCACCC-CC--ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAATCCTG--TTT--GGTGGTCT CTTCACACGGATGCGCATGA--A------ >LTR7Y_chr22_Sltr_fr_939__chr22_3839653938396890__ TGTCAGGCCTCTGAGCCCAGG-----------------------CCAGGCCATTGC---- ------------------------------------------------------------ ---TCACACAGG------------------------------------------------ -----------------------------TGGTCTGACGTGTATGAA------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------ATTTGGTGCCG------- -----TGA---------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ --------------------------CCCCAACCCTTAAG--------------AAGGTT GTT-------------------------------TGTAA--T------------------ ---------------------------------------------------TCTCCC--- -------------CA-CCCTT---------GAGAATGTACTTTGTG-------------- ---------------------------AG-ATCCACCCC-TGCCCACCAGAGAACAA--C CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AATG- GCCCCACCC-C---ATCTCCCTTTGCTGACT--CTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCATATGA--A------ >LTR7bc_chr4_97141294_97141656_weakenh_SOLO_NANOG_44108_SOX2_TCF4_C_proto7bc___chr4_9714129497141656___1362 TGTCAGGCCTCTGAGCCCAAG-----------------------C--------------- -----------------------------------------------------CTGCAC- TACACATCCAGA------------------------------------------------ -----------------------------TGTCCTGAAGCAAGTGAAG------------ ------------------------------------------------------------ ----------AATCACAAAAGAAGTGAAAATGGCCAGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GCGAAATTCCTTCTCCTGG-------------- ----C----------TC-TG-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CTCTGTCCC-TGCCCACCAGAGAACAA--T CCCTTTTGGCTGTAATTTTCCTCTACCTACCCA-AATCCTATAA-----------AATG- GCCCCACCT-C-T-ATCTCCCTTTGCCGACT--CTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGCTGCTCACACAAAACCTG--TTT--GGTGGTCT CTTCACATGGACGCGCGTG---------- >LTR7Y_chr10_2ltr_int_fr_134__chr10_103205441103205872_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------TTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAAGTGAAG------------ ------------------------------------------------------------ ----------AGTCACAAAAGAAGTGAAAATGGCTGGTTCC------------------- ------------TA------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------------------------------CAACCATTGTGATTTG TTCCTGCCCCACCTTAACTGAGCAATTA-------------------------------- ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----C----------TC-AG-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------GAG----CACTTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCCACAAGAGAAAAA--C CCCCTTTGACTGTAATTTTCCACTACCCACCCA-AATCCTATAA-----------AACT- GTCCCACCC-C-T-ATCTTCCT-TGCTGACTCCTTTTTCGGACTCAGCCCTTCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACATGCATGA--------- >LTR7bc_chr4_33747450_33747884_EncodeRepressed_SOLO_C_proto7bc___chr4_3374745033747884___1434 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCAAG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAAGTGAAG------------ ------------------------------------------------------------ ----------AATCACAAAAGAAGTGAAAATGGCGGGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATAAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------------------------------CCACCATTGTGATTTG TTCCTGCCCCACCTTAACTGAGCAATTA-------------------------------- ------------ACC--------CT--GTGAAAGTCCTTCTTCTGG-------------- ----C----------TC-AG-AAGTTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTCGTG-------------- ---------------------------AC-CCCCGGCCC-TGCCCACAAGAGAAAAA--C TCCCTTTGACTGTACTTTTCCACTACCCACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCCTTTTTTGGGCTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGACATGCATGA--C------ >LTR7bc_chr4_169919754_169920188_h3k27ac_enh_SOLO_KLF4_NANOG_44108_proto7bc____chr4_169919754169920188____1434 -GTCGGGCCGTTGAGCCCAAC-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCATG TATGCATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAAGTGAAG------------ ------------------------------------------------------------ ----------AATCACAAAAGAAGTGAAAATGGCCAGTTCT------------------- ------------TG------------------CA----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------------------------------TCACCATTGTGATTTG TTCCTGCCCCACCTTAACTGAGCGATTA-------------------------------- ------------ACC--------TT--GTGAAATTCCTTTTCCTGA-------------- ----C----------TC-AG-AACCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCCGCAAGAGAACAA--C CCCCTTTGACTGTAATTTTCCACTACTCACCCA-AATCCTATAA-----------AAGT- GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCT AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGACGTGCGTGA--CA----- >LTR7bc_chrX_45400995_45401431_h3k27ac_enh_SOLO_NANOG_44108_C_proto7bc___chrX_4540099545401431___1433 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACT TATATATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAAGAGAAA------------ ------------------------------------------------------------ ----------AATCACAAAAGAAGTGAAAATGGCCAGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------------------------------CCACCATTGTGATTTG TCTCTGCCCCACCTTAACTGAGCGATTA-------------------------------- ------------ACC--------TT--GTGACATTCCTTCTCCTGG-------------- ----C----------TC-AG-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCCACAAGAGAACAA--C CTCCTTTGACTGCAATTTTCCACTACCCACCCA-AATCCTATAA-----------AACT- GCCCCACCT-C-T-ATCTTCCT-TGTTGACTCTCTTTTCGGACTCAGCCCGCCTGCATCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGCTCT CTTCACACGGACACCCGTGA--C------ >LTR7Y_chr11_Sltr_fr_258__chr11_7453795974538389__ TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCATG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAAGTGAAG------------ ------------------------------------------------------------ ----------AATCACAAAAGAAGTGAAAATGGCTAGTTCC------------------- ------------TG------------------CC----------TAAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------------------------------CCACCATTGTGATTTG TTTCTGCCCCACCTTAACTGAGCGATTA-------------------------------- ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----C----------TC-AG-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACCCT-TGCCCACAAGAGAGCAA--C CCCCTTTGACTGTAATTTTCCACTACCCACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCGCTGAC--TGTTTTTGGACTCAAGCCACCTGCACCC AGGTGA-----AA--TAAACAGCCCTGTTACTCACACAAATCCTG--TTT--GGTGGTCT CTTCACACGGATGCGCGTG---------- >LTR7Y_chr5_Sltr_fr_1258__chr5_1010222410102655_+_ -GTCAGGCCTGTGAGCCCAAG-----------------------CTAAACCATCATATCC CCTGTGAC---------------------------------------------CTGCATG AATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAAGTGAAG------------ ------------------------------------------------------------ ----------AATCACAAAAGAAGTGAAAATGGCCGGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------------------------------CCACCATTGTGATTTG TTTCCGCCCCACGTTAACTGAGCAATTA-------------------------------- ------------ACC--------TT--GTGAAGTTCCTTCTCCTGG-------------- ----C----------TC-AG-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCAACAAGAGAACAA--C CCCCTTTGACTGTAATGTTCCACTACCCACCCA-AATCCTACAA-----------AACG- GCCCCACCC-C---ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGATGCGCGTGA--------- >LTR7bc_chr16_48336421_48336854_EncodeTxn_SOLO_C_proto7bc___chr16_4833642148336854___1433 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCATG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAAGTGAAG------------ ------------------------------------------------------------ ----------AATCACAAAAGAAGTGAAAATGGTTGGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------------------------------CCACCATTGTGATTTG TTTCTGTCCCACCTTAACTGAGCGATTA-------------------------------- ------------ACC--------TA--GTGAAATTCCTTCTCCTGG-------------- ----C----------TC-AG-AAGCTCCCCAAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCAGCAAGAGAACAA--C CCCCTTTGACTGTAATTTTCCACTACCCACCCA-AATCCTATGA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCTCACCTGTACCC AGGTGA-----AA--TAA-CAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTCCGCACGCACGCATGTGA--C------ >LTR7bc_chrX_43623115_43623542_EncodeRepressed_SOLO_proto7bc____chrX_4362311543623542____1426 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TATACAT----------------------------------------------------- --------------------------------CCTGAAGCAGATGAAG------------ ------------------------------------------------------------ ----------AATCACAAAAGAAGTGAAAATGGCCGGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------------------------------CCACCATTGTGATTTG TTTCTGCCCCACCTTAACTGAGCGATTA-------------------------------- ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----C----------TC-AG-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCCCCAAGAAAACAA--C CCCCTTTGACTGTAATTTTCCACTACCCACCCA-AATCCTATAA-----------AACG- GCCCCATCC-C-T-ATCTCCTTTCACTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGCTCT CTTCACACGGATGTGCGTGA--CA----- >LTR7Y_chr6_Sltr_fr_1438__chr6_3843331038433731_+_ -GTCAGGCCTCTGAGCCCTAA-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACA TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGC-------------------------- ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------------------------------CCACCATTGTGATTTG TTCCTGCCCCACCTTAACTGAGCGATTA-------------------------------- ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----C----------TC-AG-AACCTCCCCAAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCTGCAAGAGAAAAA--C CCCCTTTGACTGTAATTTTCCACTACCCACCCA-AATCCTATAA-----------AACA- GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCCTTTTTTGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG---TT--GGTGGTCT CTTCACATGGACACATGTGA--------- >LTR7bc_chr4_83235408_83235838_EncodeRepressed_SOLO_proto7bc____chr4_8323540883235838____1386 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATGC CCTGTGAC---------------------------------------------CTGCACA TATACATCCAGA------------------------------------------------ -----------------------------TGGCCGGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAA---AGTGAAAATGGC-------------------------- ---------------------------------C-------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------------------------------------TG TTCCTG-----CCTTAACTGATGACATT-------------------------------- ------------ACC--------TT--GTGAAATTCCTCCTCCTGG-------------- ----C----------TC-AG-AACCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCCATAAGAGAAAAA--C CCCCTTTGACTGTAATTTTCCACTACCCACCCA-AATCCTGTAA-----------AACA- GCCCCACCC-C---ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGTACCC AGGTGA-----AA--TAAACAGCCTTGTTGTTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACACACATGA--CA----- >LTR7Y_chr8_Sltr_fr_1605__chr8_5610734956107762_+_ -GTCAGGGCTCTGAGCCCAAG-----------------------CCAAGCCATCGTATCC CCTGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCC---------TGAAG------------ ------------------------------------------------------------ ----------AATCACAAAAGAAGTGAAAATGGCCAGTT--------------------- ----------------------------------------------------CTGATGAC GTT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------------------------------CCACCATTGTGATTTG TTCCTGCCCCACCTTAACTGAGCGATTA-------------------------------- ------------ACC--------TT--GTGAAATTCCTTCTCCTCG-------------- ----C----------TC-AG-AACCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TACCTGGAAGAGAAAAA--C CCCCTTTGACTATAATTTTCCACTGCCCACCCA-AATCCTATAA-----------AACA- GCCCCACCC-C---ATCTCCCTTCGCTAACTCTCTTTTCGGACTCAGCCTGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACTGATGCACGTGA--------- >LTR7bc_chr13_48001786_48002189_h3k4me3_TSS_SOLO_KLF4_C_proto7bc___chr13_4800178648002189___1402 TGTCAGGCCTCTGAGCCCAAG-----------------------C--------------- -----------------------------------------------------CTGCACG TGTACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAAGTGAAG------------ ------------------------------------------------------------ ----------AATCACAAAAGAAGGGAAATTGGCCGGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------------------------------CCACCATTGTGATTTG TTCCTGCCCCACCTTAACTGAGTGATTA-------------------------------- ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----C----------TC-AG-AACCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCCGTAAGAGAAAAA--C CCCCTTTG----TAATTTTCCGCTACCCATCCA-AATCCTATAA-----------AACA- GCCCCACCC-C---ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGTTAA-----A---TAAACAGCCTTATTGCTCACAC----CCTG--TTT--GGCGGTGT CTTCACACGGATGCGCGTGA--C------ >LTR7bc_chr4_91268547_91268957_h3k27ac_enh_SOLO_C_proto7bc___chr4_9126854791268957___1409 TGTCAGGCCTCTGAGCCCAAG-----------------------C--------------- -----------------------------------------------------CTGCACG TATACGTCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAAGTGAAG------------ ------------------------------------------------------------ ----------AATCACAAAAGAAGTGAAAATGGCTGGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------------------------------CCACCATTGTGATTTG TTCCTGCCCCACCTTAACTGATTGATTA-------------------------------- ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----C----------TC-AG-AACCTCCCCTGC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CC-CGCCCC-TGCCTGTAAGAGAAAAA--C CCCCTTTGACTGTAATTTTCCACTACCCACCCA-AATCCTATAA-----------AACA- GCCCCACCC-C---ATCTCCCTTTGCTGACTGTCTTTACGGACTCAGCCAGCCTGCACCC AGGTGA-----A---TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTGT CTTCACTGGGAAGCGCGTGA--C------ >LTR7bc_chr8_58465588_58466022_h3k27ac_EncodeRepressed_SOLO_proto7bc____chr8_5846558858466022____1434 -GTCAGGCCTCTGAGCCCGAG-----------------------CCAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAAGTGAAG------------ ------------------------------------------------------------ ----------AATCACAAAACAAGTGAAAATGGCTGGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATAAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------------------------------CCACCATTGTGATTTG TTCCTGCCCCACCTTAACTGAGCGATTA-------------------------------- ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----C----------TC-AG-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCTGCCCC-TGCCCACAAGAGAAAAG--C CCCCTTTGACTGTAATTTTCCACTACCCACCCA-AATCCTATAA-----------AACG- GCCCCACAC-C---ATCTCCCTTCCCTAACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCTTTTTGCTCACACAGATCCTG--TTT--GGTGGTCT CTTCACACGGATGCACGTGA--CA----- >LTR7bc_chr1_1470859_1471236_h3k4me3_TSS_SOLO_proto7bc____chr1_14708591471236____1375 -GTCAGTCCTCTGAGCCCAAG-----------------------C--------------- -----------------------------------------------------CTGCACG TATACGTCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAAGTGAAG------------ ------------------------------------------------------------ ----------AATCACAAAATAAGTGAAAATGGCTGGTTCC------------------- ------------TG------------------CC----------TTAG----GTGATGGC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------------------------------CCACCATTGTGATTTG TTCTTGCCCCACCTTAACT----------------------------------------- ----------------------------------------TCCTGG-------------- ----C----------TC-AG-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCTGCAAGAGAAAAA--C GCCCTTT----GTCATTTTCCATTACCCACCCA-AATCCTAGAA-----------AACG- GCCCCACCC-C---ATCTCCCTTCGTCGACTCT----TGGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTACTGCTCACACAAAACCTG--TTT--GGTGGACT CTTTACATGGACGCACATGA--CA----- >LTR7bc_chr6_39131513_39136520_1447_1_EncodeTxn_GRO5of7_GRO6of7_GRO7of7_C_proto7bc___chr6_3913607439136520___1430 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAACCCATCGTATCC CCTGTGAC---------------------------------------------CTGCACC TAGACGTCCAGA------------------------------------------------ -----------------------------CGGCCTGAAGCAAGTGAAG------------ ------------------------------------------------------------ ----------AATCACAAAAGATGTGAAAA-GGCTGGTTCC------------------- ------------TG------------------CC----------TTAC----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------------------------------CCACCATTGTGATTTG TTCCTGCCCCACCTTAACTGAGCCATTA-------------------------------- ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----C----------TC-AG-AACCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCCGTAAGAGAAAAA--C CCCCTTTGACTGTAATTTTCCACTACCCACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C---ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAGCAGCTTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTCCACACGGACGCGCAT-----A----- >LTR7bc_chrX_8356064_8356497_h3k27ac_EncodeTxn_SOLO_C_proto7bc___chrX_83560648356497___1433 TGTCAGGCCTCTAAGCTCAAG-----------------------CCAAGTCATCATATCC CCTGTGAT---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAAGTGAAG------------ ------------------------------------------------------------ ----------AATCACAAAAGAAGTGAAAATGGCCGGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------------------------------CCACCATTGTGATTTG CTCCTGCCCCACCTTAACTGAACGATTA-------------------------------- ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----C----------TC-AG-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCTGCAAGAGAAAAA--C CCCCTTTGACTGTAATTTTCCACTACCCACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C---ATCTCCCTTCGCTGACTTTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGTCTG--TTT--GGTGGTCT CTTCATACAGACGCACATGA--C------ >LTR7bc_chrX_28507462_28507894_h3k4me3_EncodeTxn_SOLO_KLF4_NANOG_44108_C_proto7bc___chrX_2850746228507894___1432 TGTCAGGCCTCTTAGCCTAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCAC- TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAAGGGAAG------------ ------------------------------------------------------------ ----------AATCACAAAAGAAGTGAAAATGGCCGATTCC------------------- ------------TG------------------CC----------TTAA----CTAATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------------------------------CCACCATTGTGATTTG TTTCTGCCCCACCTTAACTGAGCGATTA-------------------------------- ------------ACC--------TT--GTGAAATTCCTTCTCCTGC-------------- ----C----------TC-AG-AACCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCTGCAAGAGAACAA--C CCCATTTGATTGTAATTTTCCACTACCCATCCA-AATCCTATAA-----------AACG- GCCCCACCC-C---ATATCTCTTCGCTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCTTG--TTT--GGTGGTCT CTTCACACGGACGCACATGA--A------ >LTR7bc_chr2_113102528_113102959_EncodeTxn_SOLO_C_proto7bc___chr2_113102528113102959___1431 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCAATGTATGC CCTGTGAC---------------------------------------------CTGCACA TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAAGTGAAG------------ ------------------------------------------------------------ ----------AATCACAAAAGAAGTGAAAATGGCCAGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------------------------------CCACCATTGTGATTTA TTCCTGCCCCACCTTAACTGAGCGATTA-------------------------------- ------------ACC--------TT--GTGAAATTCCTTTTCCTGG-------------- ----C----------TC-AG-AACCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACGCC-TGCCCA-AAGAGAGAAA--C CCCCTTTGACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACC- TCCCCACCC-C---ATCTCCCTTCGCTGACTCTCTT-TCAGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT TTTCACACAGACGCACGTGA--C------ >LTR7bc_chr12_7629172076297783_3760_KAP1_EncodeRepressed_GRO2of7__chr12_7629172076292127____1407 -GTCAGGCCTCTGAGCCCAAG--------------------------------------- -------C---------------------------------------------CTGCACA TATACATCCAGA------------------------------------------------ -----------------------------GGGCCTGAAGCAAGTGAAG------------ ------------------------------------------------------------ ----------AATCACAAAAGAAGTGAAAATGGCTGGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------------------------------CCACCATTGTGATTTG TTCCTGCCCCACCTTAACTGAGTGATTA-------------------------------- ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----C----------TC-AG-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCAATAAGAGAACAA--C CCCCTTTGACTGTAATTTTCCACTACCCACCCA-AATCCTGTAA-----------AACA- GCCCCACCC-C-T-ATCTCCCCTC----ACTCTCTTTTTGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT TTTCACACAGACATGCGTGA--CA----- >LTR7bc_chr15_33589896_33590328_EncodeTxn_SOLO_C_proto7bc___chr15_3358989633590328___1432 --TCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCAACGTATCC CCTGAGAC---------------------------------------------CTGCACG TATATGTCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAAGTGAAG------------ ------------------------------------------------------------ ----------AATCACAAAAGAAGTGAAAATGGCCGGTTCC------------------- ------------TG------------------CC----------TTAA----CCGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------------------------------CCACCATTGTGATTTG TTCCTGCCCCACCTTAACTGAGAGATTA-------------------------------- ------------ACC--------TT--GTGAAATTCCTTCTCCTAG-------------- ----C----------TC-AG-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------G---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCCACAAGAGAACAA--C CCCCTTTGACTGTAATTTTCCACTACCCACCCA-AATCCTATAA-----------AATG- GCCCCACCC-C-T-ATCTCTCTTCACTGACTCTCTTTTCGAACTTAGCCCACCTGCACCC AGGTGA-----AA--TCAACAGCTTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACACACATGA--C------ >LTR7bc_chrX_32538158_32538590_EncodeRepressed_SOLO_proto7bc____chrX_3253815832538590____1432 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCCTTTCC CCTATGAC---------------------------------------------CTGCACC TTTACGTCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------AATCACAAAAGAAGTGAAAATGCCCGGTTGC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------------------------------CCACCATTGTGATTTG TTTTTGCCCCACCTTAACCGAGCGATTA-------------------------------- ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----C----------TC-AA-AACCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCCACAAGAGAAAAA--T CCCCTTTGACTGTAATTTTCCACTACCCACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCCGTGACTCTCTTTTCAGACTCAGCCTGCCTGCACCC AGGTGA-----AA--TAGACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACATACGTGA--------- >LTR7Y_chrX_Sltr_1743__chrX_120041755120042193_+_ -ATCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCGTAACC CCTGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAAGTGAAG------------ ------------------------------------------------------------ ----------AATCACAAAAGAAGTGAAAATGGCCGGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------------------------------CCACCATTGTGATTTG TTCCTGCCCCACCTTAACTGAGCAATTA-------------------------------- ------------ACC--------TT--GTGAAATTCCTTCACCTGG-------------- ----C----------TC-CA-AACCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------GC-CCCTGCCCC-TGCCCATAAGAGAAAAA--C CCACTTTGATTGTAATTTTTCACTACCTACCCA-AATCCTATAA-----------AACA- GCCCCACCC-C-T-ATCTCCCTTCACTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC AGGTAA-----AA--TAAACAGCCCCGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGTGCATGA--AA----- >LTR7Y_chrX_Sltr_1744__chrX_120194173120194611__ TATCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCGTAACC CCTGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAAGTGAAG------------ ------------------------------------------------------------ ----------AATCACAAAAGAAGTGAAAATGGCCGGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------------------------------CCACCATTGTGATTTG TTCCTGCCCCACCTTAACTGAGCAATTA-------------------------------- ------------ACC--------TT--GTGAAATTCCTTCACCTGG-------------- ----C----------TC-CA-AACCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------GC-CCCTGCCCC-TGCCCATAAGAGAAAAA--C CCACTTTGATTGTAATTTTTCACTACCTACCCA-AATCCTATAA-----------AACA- GCCCCACCC-C-T-ATCTCCCTTCACTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC AGGTAA-----AA--TAAACAGCCCCGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGTGCATGA--A------ >LTR7bc_chr1_180921023_180921412_EncodeRepressed_SOLO_C_proto7bc___chr1_180921023180921412___1387 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCGTATCC CCTGTGAC---------------------------------------------CTGCACC TTTATGTCCAGT------------------------------------------------ -----------------------------TGGCCTGAAGCAAGTGAAG------------ ------------------------------------------------------------ ----------AATCACAAAAGAAGTGAAAATGGCCGGTTCC------------------- ------------TA------------------TC----------TTAC----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTTCTGG-------------- ----C----------TC-AA-AATCTCCTCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCCGTAAGAGAAAAA--C CCCCTTCGATTGTAATTTTCCTCTACCCACCCA-AATCCTATAA-----------AACG- GCCCCACC--C-T-ATCTCCCTTCACTGACTCTCTTTTTGGACTCAGCCCTTCTGCACCC AGGTGA-----AA--TAAACAGACTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT TTTCACACGGACGTGCGTG---------- >LTR7bc_chr3_185786306_185786737_h3k27ac_TSS_SOLO_NANOG_44108_SMAD11_proto7bc____chr3_185786306185786737____1431 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCGTATCC CCTGTGAC---------------------------------------------CTGCACG TATATGTCCACA------------------------------------------------ -----------------------------TGGCCTGAAGCAAGTAAAG------------ ------------------------------------------------------------ ----------AATCACAAAAGAAGTGAAAATGGCCGGTTCC------------------- ------------TG------------------CC----------TTCA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------------------------------CCACCACTGTGATTTG TTCCTGCCCCACCTTAACTGAGCAATTA-------------------------------- ------------ACC--------TT--GTTAAATTCCTTCTCCTGG-------------- ----C----------TC-AG-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC---CCGCCCC-TGCCCGTAAGAGAAAAA--C CCCCTTTGATTGTAATTTTCCACTACCCACCCA-AATCCTATAA-----------AACA- GCCCCACC--C-T-AGGTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGCGCGTGA--CA----- >LTR7bc_chr14_95968233_95968645_h3k27ac_EncodeTxn_SOLO_NANOG_proto7bc____chr14_9596823395968645____1411 -GTCAGGCCTCTGAGCCCAAG-----------------------C--------------- -----------------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAAGTGAAG------------ ------------------------------------------------------------ ----------AATCACAAAAGAAGTGAAAATGGCCGGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC TTT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------------------------------CCACCATTGTGATTTA TTCCTGCCCCACCTTAACTGAGCGATTA-------------------------------- ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----C----------TC-AG-AAGCTCCCCGAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCTGCCCC-TGCCCGTAAGAGAAAAA--C CCCCTTTGACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTGGCTGACTCTCTTTCTGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGACTTGTTGCTCACACAAAGCATG--TTT--GGTGGTCT CTTCACATGTACGCGTGTGA--TA----- >LTR7bc_chr12_31807215_31807647_EncodeRepressed_SOLO_proto7bc____chr12_3180721531807647____1432 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAG------------ ------------------------------------------------------------ ----------AATCACAGAAGAAGTGAAAATGGCCCATTCC------------------- ------------TG------------------CC----------TTAA----CTTATGAC ATC--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------------------------------CCACCATTGTGATTTG TTGCTGCCCCACCTTAACTGAGCGATTA-------------------------------- ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----C----------TT-AG-AAACTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACCTA-TGCCTGCAAGAGAAAAA--C CCCTTTTGACTGTAATTTTCCACTACCCACACA-AATCCTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCGCTGACTC--TTTCTGGACTCAGCCCGCCTGCACCC AGTTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGATGCGCGTGA--CA----- >LTR7bc_chr16_74663_75026_weakenh_SOLO_proto7bc____chr16_7466375026____1359 -GTCAGGCCTCTGAGCCCAAG-----------------------C--------------- -----------------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------T-----GAAGCAAGTGAAG------------ ------------------------------------------------------------ ----------AATCACAAAAGAAGTGAAAATGGCCGGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----C----------TC-AG-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TCCCCGCCACAGAACAA--C CCCCTTTGACTGTAATTTTCCACTGCCCGCCCA-AACCCTATAA-----------AACG- GTCCCACCC-C---ATCTCCCTTCCCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--CTT--GGTGGTCT CTTCACACGGACGCGCACGA--------- >LTR7bc_chr2_78758203_78764267_2386_KAP1_weakenh_GRO3of7_proto7bc____chr2_7875820378758579____1366 -GTCAGGCCTCTGAGCCCAAG-----------------------C--------------- -----------------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAAGTAAAG------------ ------------------------------------------------------------ ----------AATCACAAAAGAAATGAAAATGGCTGGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAT ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GCC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----C----------TC-AG-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCCGCAAGAGAACAA--C CCCCTTTGACTGTAATTTTCCACTACC-ACCCA-AATCATATAA-----------AACT- GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTTGGACTCAGCCCGCCTGCACAC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGATGCGCATGA--CA----- >LTR7bc_chr4_163103887_163104322_EncodeTxn_SOLO_KLF4_C_proto7bc___chr4_163103887163104322___1390 TGTCAGGCCTCTGAGCCCAAG-----------------------C--------------- -----------------------------------------------------CTGCATG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAAGTGAAG------------ ------------------------------------------------------------ ----------AATCACAAAAGAAGTGGAAACGGCCGGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----C----------TC-AG-AACCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGGG-------------- ---------------------------AC-CCCCACCCC-TACCCGCAAGAGAACAA--C CCCCTTTGACTGTAATTTTCCACTACCCACCCA-AATCCTGTAA-----------AACA- GCCCCACCC-C-T-ATCTCCCTTCTCTGACTCTCTTTTTGGACTCAGTCCGCCTGCACCC TGGTGA-----AA--TAAACAGCTTTATTGCTCACACATAGCCTG--TTG--GGTGGTCT CTTCACACGGACGCGCATGA--C------ >LTR7bc_chr16_59613175_59613565_weakenh_SOLO_NANOG_proto7bc____chr16_5961317559613565____1389 -GTCAGGCCTCTGAGCCAAAG--------------------------------------- -------C---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAAGTGAAG------------ ------------------------------------------------------------ ----------AATCACAAAAGAAGTGAAAATGGCCGGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----C----------TC-AG-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCTGCCCA-GGCCTGCAAGAGAAAAA--C CC-CTTTGACTGTAATTTTCCACTACCCACCCA-AATCCTATAA-----------AACT- GCCCCACCC-C-T-ATCTCCCTTCCCTGACTCTTTTTTCAGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTT--TTT--GGTGATCT CTTCACATGGACATGTGTGA--CA----- >LTR7bc_chr9_87408069_87408472_h3k27ac_enh_SOLO_SMAD11_C_proto7bc___chr9_8740806987408472___1403 -------CCTCTGGGACCAAG--------------------------------------- -------C---------------------------------------------CTGCACC TATACATCCAGA------------------------------------------------ -----------------------------TGGACTGAAGGAAGCAAAG------------ ------------------------------------------------------------ ----------AAACACAAAGGAAGTGAAAATGGCTGGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----C----------TC-AG-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCC-GCCCC-TGCCCGCAAGAGAAAAA--C CCCCTTTGACTGTAATTTTCCACTACCCACCCA-AATCCTATAA-----------AACT- GCCCCACCC-C-T-ATCTGCCTTTCCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----GA--TAAACAGCCTCGTTGCTTACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGACGTGTGTGA--C------ >LTR7bc_chr6_63961194_63961665_EncodeRepressed_SOLO_7old____chr6_6396119463961665____1369 -GTCAGGCCTCTGGGTCCAAG--------------------------------------- -------C---------------------------------------------TTGCACG TATACATCTAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAAGTGAAG------------ ------------------------------------------------------------ ----------AATCACAAAAGAAGTGAAAGTGGCCAGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAA ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----C----------TC-AG-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCTGCAAGAGAGAAA--C CCCCTTTGACTGTAATTTTCCACTACCCACCCA-AATCCTATAA-----------AACA- GCCCCACC--C-T-GTCTCCCTTGGCTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC ACGTGA---------TAAA------------------AAAGCCTG--TTT--GGTGGTCT CTTCACATGGACACGTATGA--CA----- >LTR7bc_chr2_49277627_49277988_EncodeRepressed_SOLO_proto7bc____chr2_4927762749277988____1361 -GTCAGGCCTCTGAGCCCAAG--------------------------------------- -------C---------------------------------------------CTGCAC- -----ATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAAGTGAAG------------ ------------------------------------------------------------ ----------AATCACAAAATAAGTGAAAATGGCCGGTTCC------------------- ------------TG------------------CT----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----C----------TC-AG-AAGCTCCCCAAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CATCTTGTG-------------- ---------------------------AC-CCCTGCCCC-TGCCTGCCAAAGAACAA--C CCCCTTTGACTGCAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACA- GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC AGGTTA-----AA--TAAACAGCCTTGTTGCTCACACGAAGCCTG--TTA--GGTGGTCT CTTCACTTGGACACGTGTGA--CA----- >LTR7bc_chr7_152884633_152885000_weakenh_SOLO_proto7bc____chr7_152884633152885000____1367 -GTCAGGCCTCTGAGCCCAAG--------------------------------------- -------C---------------------------------------------CTGCACA TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAAGTAAAG------------ ------------------------------------------------------------ ----------AATCACAAAAGAAGTGAAAATGGCCGGTTCC------------------- ------------TG------------------CC----------CTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----C----------TC-AG-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCGTCCC-TGCCCACCAGAGAACAA--C CCCCTTTGACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACA- GCCCCACCG-G-T-ATCTCCCTTCGCTGACTCTCTTTTAGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTCCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACACGTGTGA--CA----- >LTR7bc_chr18_30612756_30613127_h3k27ac_enh_SOLO_proto7bc____chr18_3061275630613127____1371 TGTGA------------------------------------------------------- -------C---------------------------------------------CTACACG TATAGATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAAGTGAAG------------ ------------------------------------------------------------ ----------AATCACAAAAGAAGTGAAAATGGCCAGTTCC------------------- ------------TG------------------TC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----C----------TC-AG-AAGCTCCCCCAT--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTA-------------- ---------------------------AC-CCCGGCCCC-TGCCAGCCAGAGAAC-A--T CCCCTTTGACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AGTG- GCCCCACC--C-C-ATCTCCTTTCGCTGACTCTCTTTTCAGACTCAGCCGGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACAGGGACGCAAGTGA--CA----- >LTR7bc_chr4_179403518_179409294_1720_KAP1_EncodeTxn_proto7bc____chr4_179403518179403883____1365 -GTGAGGCCTCTGAGCCCTAG--------------------------------------- -------C---------------------------------------------CTGCACA TATACATGCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAAGCGAAG------------ ------------------------------------------------------------ ----------AATCAGAAAAGAAGTGAAAATGGTCAGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----C----------TC-AG-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CTCCGCCCC-TGCCGGCCAGAGAACAA--C CCCCTTTGACTGTAATTTTCCACTAT-TACCCA-AATCCTATAA-----------AACG- GCCCCACC--C-T-ATCTCTCTTCGCTGACTCTCTTTTTGGACTCAGCCTGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCGCACAAAGCCTG--TTT--GGTGGTCT CTTCACGTGGACACAAGTGA--C------ >LTR7bc_chr14_102239957_102245769_2377_1_EncodeTxn_proto7bc____chr14_102239957102240323____1364 -GTCAGGCCTCTGAGCCCAAG--------------------------------------- -------C---------------------------------------------CTGCA-G TATACATCCAGA------------------------------------------------ -----------------------------TGGCCCGAAGCAAGTGAAG------------ ------------------------------------------------------------ ----------AATCACAAAAGAAGTGAAAATGGCCAG-CCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----C----------TC-AG-AAGCTTCCACAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AT-CCCCGCCCC-TGCCCGCCAGAGAACAA--C CCCCTTTGACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACG- ACCCACCC--C-T-ATCTCCCTTTGCTGACTCTGTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCCG--TTT--GGTGGTCT CTTCACAGGGACGCGCGTGA--CA----- >LTR7bc_chr7_17414063_17420763_2366_1_EncodeRepressed_GRO4of7_proto7bc____chr7_1741406317414497____1390 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCGTATCC CCTGTGAC---------------------------------------------CTGCACA TATACATCCAGA------------------------------------------------ -----------------------------TGACCTGAAGCAAGTGAAG------------ ------------------------------------------------------------ ----------AATCACAAAAGAAGTGAAAATGGCCGGTTCC------------------- ------------TG------------------CC----------TTAA----CTCATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GGGAAATTCCTTCTCCCGG-------------- ----C----------TC-AG-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTC-------------- ---------------------------AC-CCCCACCCC-TGCCCACCAGAGAACAA--C CCCCTTTGACTGTGATTTTCCACCACCTACCCA-AATCCTATAA-----------AACA- GCCCCACCC-C-T-ATCTCCGTTTGCTGACTCTCTTTTCAGACTCAGCCTGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGTCTG--TTT--GGTGGTCT CTTCACATGGACGCACGTGA--CA----- >LTR7bc_chr7_51868272_51868662_EncodeRepressed_SOLO_proto7bc____chr7_5186827251868662____1390 -GTCAGGCCTCCGAGCCCAAG-----------------------CTAAGCCATCATATCC CTTGTGAC---------------------------------------------CTGCACA TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAAGTGAAG------------ ------------------------------------------------------------ ----------AATCACAAAAGAAGTGAAAATGGCCGGTTCC------------------- ------------TG------------------AC----------TTAA----TTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----C----------TC-AG-AAGTTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTT-------------- ---------------------------AC-CCCCACCCT-TGCCCACCAGAGAACAA--C CTCCTTTCACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AAGG- GCCCCAGCC-C-T-ATCTCCCTTTGCTGACTGTGTTTTTGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGATGCGTGTGA--CA----- >LTR7bc_chr19_23026429_23032231_1417_1_EncodeRepressed_C_proto7bc___chr19_2303184123032231___1390 TGTCACACCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCATG TATATATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAAGTGAAG------------ ------------------------------------------------------------ ----------AATCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----C----------TC-AG-AACCTCCCCCAT--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----AACCTTGTG-------------- ---------------------------AC-CCCCACCCC-TGACCGCCAGAGAACAA--C CCCCTTTGACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACA- GCCCCACCC-C-T-ATCTCCCTTCGCGGACTCTCTTTTTGGACTCAGCCAGCCTGTTCCC AGGTGA-----AA--TAAATAGCCTTGTTGCTCACACAAAGACTG--TTT--GGTGGTCT CTTTACACAGATGCACGTGA--C------ >LTR7bc_chr7_43202709_43203099_EncodeTxn_SOLO_proto7bc____chr7_4320270943203099____1390 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCATG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAAGTGAAG------------ ------------------------------------------------------------ ----------AATCACGAAAGAAGTGAAAATGGCTGATTCC------------------- ------------TG------------------CC----------TTGA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----C----------TC-AG-AAGCTCCCCAAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------G---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACCCC-TGCTAGCCAGAGGACAA--C CCCCTTTGACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACA- GCCCCACCC-C-T-ATCTCCCTTCGCTGATTCTCTTTTTGGACTCAGCCCGCCTGCCCCC AGGTGA-----AA--TGAACAGCTTTGTTGCCCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCGTGA--CA----- >LTR7bc_chrX_6512930065135094_2996_1_EncodeRepressed_GRO2of7__chrX_6513471365135094___1381 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATAC CCTGTGAC---------------------------------------------CTGCGCA TAT-----CAGG------------------------------------------------ -----------------------------T-GTCTAAAGCAAGTGAAG------------ ------------------------------------------------------------ ----------AATCACAAAAGAAGTAAAAATGGCTGGTTCC------------------- ------------TG------------------CC----------TTAA----CTGACGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--ATGAAATTTCTTCTCCTGT-------------- ----C----------TC-AG-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AT-TCCCGCCCC-TGCCTGCCAGAGAACAA--C C-CCTTTGACTGTAATTTTCCCTTACCTACCCA-AATCCTACAA-----------AACT- GCCCCACCC-C-T-AACTCCCTTTGCTGA--CTCTTTTCAGACTCAGCCCGCCAGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCACGTGA--C------ >LTR7bc_chr1_96623317_96623706_EncodeTxn_SOLO_C_proto7bc___chr1_9662331796623706___1387 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATAT-C CCTGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAAATGAAG------------ ------------------------------------------------------------ ----------AATCACAAAAGAAGTGAAAATGGCCAGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----C----------TC-AG-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------AAG----CACCTTGTG-------------- ---------------------------AC-TCCCACCCC-TGCCCGCCGAAGAACAA--C CCCCTTTGACTGTAATTTTCCATTACCTACCCA-AATCCTACAA-----------AATG- GCCCCACCC-C-T-ATCTCCCTTCGCTGA--CTCTTTTCAGACTCAGCTTGCCTGCACCC AGGTGA-----AA--TAAACAGACTTGTTGCTCACAAAAAGCCTG--TTT--GGTGGTCT CTTCACACGGATGCGTGTGA--C------ >LTR7Y_chr12_Sltr_fr_358__chr12_5676589256766313_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCACATCC CCTGTGAC---------------------------------------------CTGCATG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAG------------ ------------------------------------------------------------ ----------ATCCACAAAAGAAGTGAAAATAGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGA-GTG ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------AAC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----C----------TC-AG-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTATG-------------- ---------------------------AC-CCCCACCCC-TGCCTGCAAGAGAAAAA--C CCCCTTTAAATGTAATTTTCCGCTACCCACCCA-AATCCTATAA-----------AATG- ACCCCACCC-C---ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGATCT CTTCACTGGGACGCGTGTGA--------- >LTR7bc_chr7_92479193_92485274_3951_1_EncodeTxn_GRO3of7_C_proto7bc___chr7_9248484192485274___1387 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCC--TCC CCTGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACCAAAG------------ ------------------------------------------------------------ ----------AATCACAAAAGCAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----C----------TC-AA-AACCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCCCTAAGAGAAA-A--C CCCCTTTGATTATAATTTTCCACTACCCACCCA-AATCCTATAA-----------AATG- GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCCTTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCTCATGA--C------ >LTR7d1_chr11_6366028_6371660_3013_ZNF534_EncodeRepressed_7down____chr11_63660286366431____1403 -GTCAGGCCTCTGAGCCAAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACA TACACATCCAGA------------------------------------------------ -----------------------------TGGCCTGCCTTAACTGAGG------------ ------------------------------------------------------------ ----ACATTCAACCACAAAAGAAGTGAAAATGGCTGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCATTTTCCTGG-------------- ----CCCATCCTGGCTC-AA-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACCCC-TGCCCGCCAGAGAACAA--C CCCCTTTGACTATAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AATG- ACCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTCTTCAGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGGCT CTTCACACGGACG---------------- >LTR7Y_chr1_2ltr_int_fr_118__chr1_7970163179702062__ TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCT CCTGTGAC---------------------------------------------TTGCACA TATATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAAGGCCCTGC-CCTGCCTTAACTGAT----------------------- ---GACATACCACCA-------------------------T------------------- ------------TGTGATTTGTTCCTGCCCCACC----------TTAACTGAGTGATTA- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------CT--GTGAATTTCCTTCTCCTGG-------------- ----TAC-----------AG-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CC-CGCCCC-TGCCCACCAGAGAACAA--C CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATTCTATAA-----------AATG- GCC-CACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCTCTCCTGCAACC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAACCCTG--TTT--GGTGGTCT CTTCACACAGACGCGCATGAA-------- >LTR7Y_chr6_2ltr_int_fr_1405__chr6_146456036146456469__ TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAAGGCCCTGC-CCTGCCTTAACTGAT----------------------- ---GACATTCCACCA-------------------------T------------------- ------------TGTGATTTGTTCCTGACCCACC----------TTAACTGAGTGATTA- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------CT--GTGAATTTCCTTCTCCTGG-------------- ----CTC-----------AG-AAGCTTCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCCACCAGAGAACAA--C CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AATG- GCCCCACCC-C-T-ATCTCCCTTTGCTGACCCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCATGCTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGACGCACATGAA-------- >LTR7Y_chr22_2ltr_int_fr_936__chr22_3250275432503187_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAAGACCCTGC-CCTGCCTTAACTGAT----------------------- ---GACATTCCACCA-------------------------T------------------- ------------TGTGATTTGTTCCTGCCCCACC----------TTAACTGAGTGATTA- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------CT--GTGAATTTCCTTCTCCTGG-------------- ----CTC-----------AG-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCCACCAGAGAACAA--C CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AATG- GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTCGGACTCATCCGGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATGAAA------- >LTR7Y_chr5_Sltr_1345__chr5_8018344880183901_+_ -GTCAGGCCTCTGAGCCTAAG-----------------------CCAAGCCATCTCATCC CCTGTGAC---------------------------------------------TTGCACG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAAGGCCCTGC-TCTGCCTTAACTGAT----------------------- ---GACATTCCACCA-------------------------T------------------- ------------TGTGATTTGTTCCTGCCCCACC----------TTAACTGAGTGATTA- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------CT--GTGAATTTCCTTCTCCTGG-------------- ----CTC-----------AG-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCCACCAGAGAACAA--C CCCCTTTGACTGTAATTTTCCATTACCTTCCTA-AATCCTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACCGACGCGCATGAAA------- >LTR7Y_chr20_2ltr_int_fr_896__chr20_1234550612345939__ TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGATGTAACTGAAGAATCACAAAAGA AGTGA-----AAAGGCCCTGC-CCCGCCTCAACTGAT----------------------- ---GACATTCCACCA-------------------------T------------------- ------------GGTGATTTGTTCCTGCCCCACC----------TTAACTGAGTGATTA- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------CT--GCGAATTTCCTTCTCCTGG-------------- ----CTC-----------AG-AAGCTCCCCAAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCCACCAGAGAACAA--C CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AATG- GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGTGTATGAA-------- >LTR7Y_chr4_2ltr_int_fr_1199__chr4_182814310182814743_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CCAACCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAAGGCCCTGC-CCCGCCTTAACTGAT----------------------- ---GACATTCCACCA-------------------------T------------------- ------------TGTGATTTGTTCCTGCCCCACC----------TTAACTGAGTGATTA- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------CT--GCAAATTTCCTTCTCCTGG-------------- ----CTC-----------AG-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCCTGTG-------------- ---------------------------AC-CCCCACCCC-TGCCCACCAGAGAACAA--C CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGATGCGCAAGAAA------- >LTR7Y_chr22_Sltr_947__chr22_4516211045162544_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGTACG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAAGGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCA-------------------------T------------------- ------------CGTGATTTGTTCCTGCCCAACC----------TTAACTAAGTGATTA- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------CT--GTGAATTTCCTTCTCCTGG-------------- ----CTC-----------AG-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACCCC-TGCCCACCAGAGAACAA--C CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCGCTGACTGTCTTTTTGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAATCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATGAAA------- >LTR7Y_chr17_2ltr_int_fr_566__chr17_1197175611972189_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCT CCTGTGAC---------------------------------------------TTGCACC TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAAGGCCCTGC-CCCGCCTTAACTGAT----------------------- ---GACATTCCACCA-------------------------T------------------- ------------TGTGATTTGTTCCTGCCCCAAC----------TTAACTGAATGATTA- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------CT--GGGAATTTCCTTCTCCTGG-------------- ----CTC-----------AG-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCCACCAGAGAACAA--C CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAACCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCACATGAAA------- >LTR7Y_chr19_2ltr_int_fr_678__chr19_4332895143329384__ TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCATG TATATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAAGGCCCTGC-CCCGCCTTATCTGAT----------------------- ---GACATTCCACCA-------------------------T------------------- ------------TGTGATTTGTTCTTGCCCCACC----------TTAACTGAGTGATTA- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------CT--GTGAATTTCCTTTTCCTGG-------------- ----CTC-----------AG-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCCACCAGAGAACAA--C CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTACAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAACCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGCGCATGAA-------- >LTR7u2_chr16_60085447_60085879_h3k27ac_EncodeTxn_SOLO_KLF4_C_proto7y___chr16_6008544760085879___1431 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCATG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAAGGCCCTGC-CCCGCCTTAACTGAT----------------------- ---GACATTCCGCCA-------------------------T------------------- ------------TGTGATTTGTTCCTGCCCCACC----------TTAACTGAGTGATTA- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------CT--GTGAATTTCCTTCTCCTGG-------------- ----CTC-----------AG-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AT-CCCTGCCCC-TGCCCACCAGAGAACAA--C CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTGTAA-----------AACA- GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCACATG---------- >LTR7Y_chr2_2ltr_int_fr_756__chr2_1256968012570109_+_ -GTCAGGCCTCTGAACCCAAG-----------------------CCAAGCCATTGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAAGGCCCTGC-CCCGCCTTAACCGAT----------------------- ---GACATTCCACCA-------------------------T------------------- ------------TGTGATTTGTTCCTGCCCCACC----------TTAACTGAGTGATTA- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------CT--GTGAATTTCCTTCTCCTGG-------------- ----CTC-----------AG-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCTGCCCC-TGCCCAGCAGAGAACAA--C CCCCTTTGACTATAATTTTCCATTACCTTCCCA-AATCTTATAA-----------AACG- GCCCC--CC-C-T-ATCTCCCTTCGCTGAC--TCTTTTCAGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCCCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCTCATGAA-------- >LTR7Y_chr3_Sltr_1107__chr3_9441272394413156__ TGTCAGCCCTCTGAGCCCAAG-----------------------CCAAGCCATTGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTTAAGTAAGTGAAAAATCACAAAAGA AGTGA-----AAAGGCCCTGC-CCCGCCTTAACTGAT----------------------- ---GACATTCCACCA-------------------------T------------------- ------------TGTGATTTGTTCCTGCCCCACC----------TTAACTGAGTGATTA- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------CT--GTGAATTTCCTTCTCCTGG-------------- ----CTC-----------AG-ATGCTCCCCCTC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CAACTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCCACCAGAAAACAA--C CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGAACGCACATGAA-------- >LTR7Y_chr3_Sltr_955__chr3_112400427112400860__ TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAAGGCCCTGC-CCCGCCTTAACTGAT----------------------- ---GACATTCCACCA-------------------------T------------------- ------------TGTGATTTGTTCCTGCCCCATC----------TTAACTGAGTGATTA- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------CT--GTGAATTTCCTTCTCCTGG-------------- ----CTC-----------AG-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCCACCAGAGAACAA--C TCCCTTTGACTGTAATTTTCCATTACCTTCCTA-AATCCTATAA-----------AATG- GCCCCACCC-C-T-GTCTCCCTTCGCTGACTCTCTTTT-GGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCTCATGAA-------- >LTR7Y_chr8_2ltr_int_fr_1626__chr8_9009543590095868__ TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC CCTGTGAC---------------------------------------------TTGCACG TATACACCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGGAGAATCACAAAAGA AGTGA-----AAAGGCCCTGC-CCCGCCTTAACTGAT----------------------- ---GACATTCCACCA-------------------------T------------------- ------------TGTGATTTGTTCCTGCCCCACC----------TTAACTGAGTGATTA- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------CT--GTGAATTTCCTTGTCCTGG-------------- ----CTC-----------AG-AGGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CACTGCCCC-TGCCCACCAGAGAACAA--C CCCCTTTGGCTGTAATTTTCCATTACCTTTCCA-AATCCTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTTGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGCACATGAA-------- >LTR7Y_chr1_2ltr_int_fr_55__chr1_221965924221966356_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTG---- ----TGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AA-GACCCTGC-CCGACCTTAACTGAT----------------------- ---GACATTCCACCA-------------------------T------------------- ------------TGTGATTTGTTCCTGCCCCACC----------TTAACTGAGTGATTA- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACG--------CT--GTGAATTTCCTTCTCCTGG-------------- ----CTC-----------AG-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CAGCTTGTG-------------- ---------------------------CC-CCCCGCCCC-TGCCCACCAGAGAACAA--C CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCATTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGATGTGCATGAAA------- >LTR7Y_chr8_2ltr_int_fr_1631__chr8_9717502997175463_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG --TATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTAA-----AAAGGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCA-------------------------T------------------- ------------TGTGATTTGTTCCTGCCCCACC----------TTAACTGAGTGATTA- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------CT--GTGAATTTCCTTCTCCTGG-------------- ----CTC-----------AG-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCCACCAGAGAACAA--C CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTTGGACTCAGCCCACCTGCACCC AGGTGA-----AA--CAACCAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGACGCGCATGAAA------- >LTR7Y_chr1_Sltr_128__chr1_9465749194657924__ TGTCAGGCCTCTGAGCACAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAAGGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCA-------------------------T------------------- ------------TGTGATTTGTTCCTGCCCCACC----------TTCACTGAGTGATTA- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------CT--GTGAATTTCCTTCTCCTGG-------------- ----CTC-----------AG-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCCACCAGAGAACAA--C CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATGAA-------- >LTR7Y_chr1_2ltr_int_fr_64__chr1_228947424228947857_+_ -GTCAGGCTTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCCCA TATACGCAAAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCCCAAAAGA AGTGA-----AAAGGCCCTGC-CCCTCCTTAACTGAT----------------------- ---GACATTCCACCA-------------------------T------------------- ------------TGTGATTTGTTCCTGCCCCACC----------TTAACTGAGTGATTA- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------CT--GTGAATTTCCTTCTCCTGG-------------- ----CTC-----------AG-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCTCGCCCC-TGCCCACCAGAGAACAA--C CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCCCACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACATGCATGAAA------- >LTR7Y_chr2_2ltr_int_fr_862__chr2_5811869858119130__ TGTTAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACA TATATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAAGGCCCTGC-CCCGCCTTAACTGAT----------------------- ---GACATTCCACCA-------------------------C------------------- ------------TGTGATTTGTTCCTGCCCCACC----------TTAACTGAGTGATTA- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------CT--GTGAATTTCCTTCTCCTGG-------------- ----CTC-----------AG-AAGCTACCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCCACCAGAGAACAA--C CTCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAACC-GCCTGCACCC AGGTGA-----AA--TAAACAGCCATGCTGCTCACACAAAGCCTG--TTT--GGTAGTCT CTTCACACGGACACACATGAA-------- >LTR7Y_chr10_2ltr_int_fr_186__chr10_9029498390295414_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATAGCATCC CCTGTGAC---------------------------------------------TTGCACA TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAAGGCCCTGC-CCCATCTTAACTGAC----------------------- ---GACATTCCACCA-------------------------T------------------- ------------TGTGATTTGTTCCTGCCCCACC----------TTAACTGAGTGATTA- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------CT--GTGAATTTCCTTCTCCTGG-------------- ----CTC-----------AG-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCCACCAGAGAACAA--C CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG- GCCCTACCC-C-T-ACCTCCCTTTGCTGACT--CTTTTCAGACTCAGTCCGCCTACACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT TTTCACACGGACGCGCATGAAA------- >LTR7u2_chr1_37213390_37213816_h3k27ac_EncodeRepressed_SOLO_C_proto7y___chr1_3721339037213816___1426 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC CCTGTGAC---------------------------------------------TTGTACA TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAAGGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCA-------------------------T------------------- ------------TGTGATTTGTTCCTGCCCCACC----------TTAACTGAGTGATTA- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------CT--GTGAATTTCCTTC---TGG-------------- ----CTC-----------AG-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CATCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCCACCAGAGAACAA--C CCCCTTTGACTGTAATTTTCCATTACCTTCCCT-AATCCTATAA-----------AACA- GCCCCACCC-C-T-ATCTCCCTTTGCTGACT--CTTTTCAGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAATAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT TTTCACACGGACGCACATG---------- >LTR7Y_chr4_Sltr_1227__chr4_6738399267384424__ TGTCACGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACA TATATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAAGGCCCTGC-CCTGCCTTAACTGAT----------------------- ---GACATTCCACCA-------------------------T------------------- ------------TGTGATTTGTTCCTGCCCCACC----------TTAACTGAGTGATTA- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------CT--GCGAATTTCCTTGTCCTGG-------------- ----CTC-----------AG-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCA-TGCCCACCAGTGAACAA--C CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG- GCCCCACCC-C---ATCTCCCTTTGCTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGATCT CTTCACACGGACGTGCATGAA-------- >LTR7Y_chr10_2ltr_int_fr_190__chr10_9673300596733411_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAAGGCCCTGC-CCCGCCTTAACTGAT----------------------- ---GACATTCCACCA-------------------------T------------------- ------------TGTGATTTGTTCCTGCCCCACC----------TTAACTGAGTGATTA- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------CT--GTGAATTTCCTTCTCCTGG-------------- ----CTA-----------AG-AAACTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCCCCCAGAGAACAA--C CCCCTTTGACTGTCATTTTCCATTACCTTCCCA-AATCCTATAA-----------AAC-- -------------------------------------TCAGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGATGCGCATGAAA------- >LTR7Y_chr6_2ltr_int_fr_1363__chr6_102292727102293160_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATATGCCCAGA------------------------------------------------ -----------------------------TGCCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAAGGCCCTGC-TCCGCCTTAACTGAT----------------------- ---GACATTCCACCA-------------------------T------------------- ------------TGTGATTTGTTCCTGCCCCACC----------TTAACTGAGTGATTA- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------CT--GTGAATTTCCCTCTCCTGG-------------- ----CTC-----------AG-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCCCCCAGAGAACAA--C CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCCCCCTTTGCTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCATACGGACGTGCATGAAA------- >LTR7Y_chr3_2ltr_int_fr_958__chr3_116110799116111228__ TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAAGGCCCTGC-CCCGCCTTAACTGAT----------------------- ---GACATTCCACCA-------------------------T------------------- ------------TGTGATTTGTTCCTGCCCCACC----------TTAACTGAGTGATTA- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------CT--GTGAATTTCCTTCTTCTGG-------------- ----CTC-----------AG-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCCACCAGAGAAC----- CCCTTTTGACTGTAATTTTCCATTACCTTCCTA-AATCCTATAA-----------AACG- GCCCCACCC-C-T-ACCTCCCTTCGCTGACTC--TTTTCCGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTTACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATGAA-------- >LTR7Y_chr5_2ltr_int_fr_1352__chr5_9282374292824175_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACA CATATGCCCAGA------------------------------------------------ -----------------------------TGGCCCGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAAGGCCCTGC-CCCGCCTTAACTGAT----------------------- ---GACATTCCACCA-------------------------T------------------- ------------TGTGATTTGTTCCTGCCCCACC----------TTAACTGAGTGATTA- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------CT--GTGAATTTCCTTCTCCTGG-------------- ----CTC-----------AG-AAGCTCCTCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCCACCAGAGAACAA--C CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACA- GCCCCACCC-C-T-ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGTCCGCCTACACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGATGCACATGAAA------- >LTR7Y_chr17_2ltr_int_fr_573__chr17_3418319134183623_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAAGGCCCTGC-CCCGCCTTAACTGAT----------------------- ---GACATTCCACCA-------------------------T------------------- ------------TGTGATTTGTTCCTGCCCCACC----------TTAACTGAGTGATTA- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------CT--GTGAATTTCCTACTCCTGG-------------- ----CTC-----------AG-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGAG-------------- ---------------------------AC-CCCTGCCCC-TGCCCACCAAAGAACAA--C CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC A-ATGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGTATGAAA------- >LTR7Y_chr19_2ltr_int_fr_670__chr19_3616059236161023__ TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCAACC CCTGTGAC---------------------------------------------TTGCTCG TATATGCCCAGA------------------------------------------------ -----------------------------CGGCCTGAAGTAACTGACGAATCACAAAAGA AGTGA-----AAAGGCCCTGC-CCCGCATTAACTGAT----------------------- ---GACATTCCACCA-------------------------T------------------- ------------TGTGATTTGTTCCTGCCCCACC----------TTAACTGAGTGATTA- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------CT--GTGAATTTCCTTCTCCTGG-------------- ----CTC-----------AG-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACTTTGTG-------------- ---------------------------AC-CCCTGCCCC-TGCCCACCAGAGA---A--C CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCCGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGCGCATGAA-------- >LTR7Y_chrX_2ltr_int_fr_1785__chrX_35597283560161__ TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAAGGCCCTGC-CCCGCCTTAACTGAT----------------------- ---GACATTCCACCA-------------------------T------------------- ------------TGTGATTTGTTCCTGCCCCACC----------TTAACTGAGTGATTA- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------CT--GTGAATTTCCTTCTCCTGG-------------- ----CTC-----------AG-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCCACCAGAGAACAA--C CCCCTTTGACTGTAATTCTCCATTACCTTCCCA-AATCCTATAA-----------AACA- GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCAAACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGTGCATGAA-------- >LTR7Y_chr11_Sltr_221__chr11_2387971723880161__ TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTTTGCC---------------------------------------------TTGCACG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAAGGCCCTGC-CCCGCCTTAACTGAT----------------------- ---GACATTCCACCA-------------------------T------------------- ------------TGTGATTTGTTCCTGCCCCACC----------TTAACTGAGTGATTA- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------CT--GTGAATTTCCTTCTCCTGG-------------- ----ATC-----------AG-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCCACCAGAGAACAA--C CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACA- GCCCCACCC-C-T-ATCTTCCTTCGCTGACTCTCTTTTTGGACTCAGCCTGCCTGCACCC AGGTGA-----AA--TAAACAGTCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATGAA-------- >LTR7Y_chr4_2ltr_int_fr_1212__chr4_2432328424323716_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACA TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAAGGCCCTGC-CCCGCCTTAACTGAT----------------------- ---GACATTCCACCA-------------------------T------------------- ------------TGTGATTTGTTCCTGCCCCACC----------TTAACTGAGTGATTA- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------CC--ATGAGTTTCCTTCTCCTGG-------------- ----CTC-----------AG-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCTGCCCC-TGCCCACCAGAGAACAA--C CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AATG- GCCCCACCC-C-T-ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGTGCATGAA-------- >LTR7Y_chr8_2ltr_int_fr_1614__chr8_7939125179391685__ TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCA CCTGTGAC---------------------------------------------TTGCACA TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAAGGCCCTGC-CCCGCCTTAACTGAT----------------------- ---GACATTCCACCA-------------------------T------------------- ------------TGTGATTTGTTCCTGCCCCACC----------TTAACTGAGTGATTA- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------CT--GTGAATTTCCTTCTCCTGG-------------- ----CTC-----------AG-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACCCC-TGCCCACCAGAGAACAA--C CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCGCCTGCGCCC AGGTGA-----AA--TAAACAGCCATGTTGCTCCCACAAAGCCTG--TTT--GATGGTCT CTTCACACGGACGTGCATGAA-------- >LTR7Y_chr13_2ltr_int_fr_431__chr13_9083956490839993_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATTC CCTGTGAC---------------------------------------------TTGCACG TATACACCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAAGGCCCTGC-CCCGCCTTAACTGAT----------------------- ---GACATTCCACCA-------------------------T------------------- ------------TGTGATTTGTTCCTGCCCCACC----------TTAACTGAGTGATTA- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------CT--GTGAATTTCCTTCTCCTGG-------------- ----CTC-----------AG-AAGCTCCCACAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCCACCAGAGAACAA--C CCCCTT----TGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG- ACCCCACCC-C-T-ATCTCCCTTCACTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC AAGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACAAGGACACGCGTGAAA------- >LTR7Y_chrX_2ltr_int_fr_1819__chrX_9227836192278794__ TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC CCTGTGAC---------------------------------------------TTGCACG GATATGACCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAAGGCCCTGC-CCCGCCTTAACTGAT----------------------- ---GACATTCCACCA-------------------------T------------------- ------------TGTGATTTGTTCCTGCCCCACC----------TTAACTGAGTGATTA- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------CT--GTGAATTTCCTTCTCCAGG-------------- ----CTC-----------AG-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCCACCAGAGAACAA--C CCCCTTTGACTGTAATTTTCCATTGCCTTCCCA-AATCCTATAA-----------AACG- GCCCCATCC-C-T-ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC ACGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACACGCATGAA-------- >LTR7Y_chr6_2ltr_int_fr_1379__chr6_124890407124890840_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC CCTGTGAC---------------------------------------------TTGCACC TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAAGGCCCTGC-CCCGCCTTAACTGAT----------------------- ---GACATTCCACCA-------------------------C------------------- ------------TGTGATTTGTTCCTGCCCCACC----------TTAACTGAGTGATTA- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------CT--GTGAATTTCCTTCTCCTGG-------------- ----CTC-----------AG-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACCCC-TGCCCACCAGAGAAAAA--C CCCCTTTGACTATAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTCGTCT CTTCACATGGACGCGCATGAAA------- >LTR7Y_chr13_2ltr_int_fr_393__chr13_109265090109265520_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA ACTGA-----AAAGGCCCTGC-CCCGCCTTAACTGAT----------------------- ---GACATTCCACCA-------------------------T------------------- ------------GGTGATTTGTTCTTGCCCCACC----------TTAACTGAGTGATTA- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------CT--GTGAATTTCCTTCTCCTGG-------------- ----CTC-----------AG-CAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCCACCAGAGAACAA--C CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG- GCCCCACCC-C---ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCCCCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGT-GTCT CTTCACATGGACTCGAGTGAA-------- >LTR7Y_chrX_Sltr_1790__chrX_4246860942469038_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACA TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAAGGCCCTGC-CCCGCCTTAACTGAT----------------------- ---GACATTCCACCA-------------------------T------------------- ------------TGTGATTTGTTCCTGCCCCACC----------TTAACTG----ATTA- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------CT--GTGAATTTCCTTCTCCTGG-------------- ----CTC-----------AG-AAGCTCTCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCTGCCCC-TGCCCACCAGAGAACAA--C CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACTCGAGTGAAA------- >LTR7Y_chrX_2ltr_int_fr_1741__chrX_119323040119323471__ TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAAGGCCCTGC-CCCGCTTTAACTGAT----------------------- ---GACATTCCACCA-------------------------T------------------- ------------TGTGATTTGTTCCTGCCCCATC----------TTAACTGAGTGATTA- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------CT--GTGAATTTCCTTCTCCTGG-------------- ----CTC-----------AG-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCCACCAGAGAACAA--C CCCCTTTGACT--AATTTTCCATTACCTTCCCA-AATCCTGTAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTA--TTT--GGTGGTCT CTTCACACAGACTCGAGTGAA-------- >LTR7u2_chr3_124752578124758183_3428_ZNF534_k4me3_EncodeTxn_KLF4_GRO2of7__chr3_124757755124758183___1426 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAAGGCCCTGC-CCCGCCTTAACTGAT----------------------- ---GACATTCCACCA-------------------------T------------------- ------------TGTAATTTGTTCCTGCCCCATC----------TTAACTGAGTGATTA- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------CT--GTGAATTTCCTTCTCCTGG-------------- ----CTC-----------AG-AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AA-CCCCGCCCC-TGCCCACCAGAGAACAA--C CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG- GCCGCA---------TCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AAGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TCT--GGTTGTCT CTTCACATGGACTCGAGTGA--------- >LTR7Y_chr4_2ltr_int_fr_1115__chr4_103559041103559474__ TGTCAGGCCTCTGAACCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCATG TATATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAACGCCCTGC-CCCGCCTTAACTGAT----------------------- ---GACATTCCACCA-------------------------T------------------- ------------TGTGATTTGTTCCTGCCCCACC----------TTAGCTGAGTGATTA- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------CT--GTGAATTTCCTTCTCCTGG-------------- ----CTC-----------AG-AAGCTCCCCGAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCCACCAGAGAACAA--C CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAGACAGCCATGTTGCTCACACAAAGCCTG--TTT--GCTGGTCT CTTCACACTGACTCGAGTGAA-------- >LTR7Y_chr18_2ltr_int_fr_626__chr18_7332461573325047_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCATG TATACGCCCAGA------------------------------------------------ -----------------------------TGTCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAAGGCCCTGC-CCCGCCTTAACTGAT----------------------- ---GACATTCCACCA-------------------------T------------------- ------------TGTGATTTGTTCCTGCCCCACC----------TTAACTGAGTGATTA- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------CT--GTGAATTTCCTTCTCCTGG-------------- ----CTC-----------AG-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACCCC-TGCCCACCAGAGAACAA--C CTCCTTTGACTGTAATTTTCCATTAACTTCCCA-AATCCTATAA-----------AACG- GCCCCACCC-C---ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACAGGGACACGGATGAAA------- >LTR7Y_chr3_2ltr_int_fr_950__chr3_104445341104445775__ TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCA CCTGTGAC---------------------------------------------TTGCATG TATAAGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAAGGCCCTGC-CCCGCCTTAACTGAT----------------------- ---GACATTCCACCA-------------------------T------------------- ------------TGTGATTTGTTCCTGCCCCACC----------TTAACTGAGTGATTA- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------CT--GTGAATTTCCTTCTCCTGA-------------- ----CTC-----------AG-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACCCC-TGCCCACCAGAAAACAA--T CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCCCTGACTCTCTTTTCGGACTCAGCCCGCCTGCTCCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT TTTCACACGGATACATATGAA-------- >LTR7Y_chr4_2ltr_int_fr_1136__chr4_126150114126150543__ TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCTTCC CCTGTGAC---------------------------------------------TTGCATG TATAGGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAAGGCCCTGC-CCCGCCTCAACTGAT----------------------- ---GACATTCCACCA-------------------------T------------------- ------------TGTGATTTGTTCCTGCCCCACC----------TTAACTGAGTGATTA- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------CT--GTGAATTTCCTTCTCCTGG-------------- ----CTC-----------AG-AAGCTCCCCAAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------AAG----CACCTTGTG-------------- ---------------------------AC-CCCCACCCC-TGCCCACCAGAGAAC----- CCCCTTTGACTGTAATTTTCCATTACCTCCCCA-AATCCTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCACTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC AA-TGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGACGCGCATGAA-------- >LTR7Y_chrX_Sltr_1726__chrX_113988395113988824_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC CCTGTGAC---------------------------------------------TTGCACG TATACGCTCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAAGGCCCTGC-CCCGCCTTAACTGAT----------------------- ---GACATTCCACCA-------------------------T------------------- ------------TGTGATTACTTCCTGCCCCACC----------TTAACTGAGTGATTA- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------CT--GTGAATTTCCTTCTCCTGG-------------- ----CTC-----------AG-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------AAG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCCACCAGAGAACAA--C CCCCTTTGACT--AATTTTCCATTACCTTCCCA-AATCCTGTAA-----------AACG- GCCCCACCC-C-T-AACTCCCTTCGCTGACT--CTTTTCAGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TCAACAGCCATTTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACAGGGACGTGCATGAAA------- >LTR7Y_chr12_2ltr_int_fr_385__chr12_9574886295749284_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACA TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGAGA-----AAAGGCCCTGC-CCTGCCTTAACTGAT----------------------- ---GACATTCCACCA-------------------------T------------------- ------------TGTGATTTGTTCCTGCCCCACC---------------------ATTA- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------CT--GTGAATTTCCTTCTCCTGG-------------- ----CTC-----------AG-AAGCTCCCCAAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCTACCCC-TGCCCACCAGAAAACAA--C CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGCGCATGAAA------- >LTR7u2_chr1_65643207_65648034_3480_ZNF534_ZNF90_KAP1_EncodeRepressed_GRO5of7_GRO6of7_GRO7of7_C_proto7y___chr1_6564760365648034___1431 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACA TATATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAATA AGTGA-----AAAGGTCCTGC-CCCGCCTTAACTGAT----------------------- ---GACATTCCACCA-------------------------T------------------- ------------TGTGATTTGTTCTTGCCCCACC----------TTAACTGAGTGATTA- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------CT--GTGAATTTCCTTCTCCTGG-------------- ----CTC-----------AG-AAGCTCCCCAAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----GACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCCACCAGAGAACAA--C CCCCTTTGACTGTAATTTTCCTTTACCTAACCA-AATCCTATAA-----------AACG- GCCCCACCC-G-T-ATCTCCCTTCGCTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACAGAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGCGCATG---------- >LTR7Y_chr15_2ltr_int_fr_498__chr15_3523862935239062_+_ -GTCAGGCCTCTTAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAT---------------------------------------------TTGCACA TACACACCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAAGGCCCTGC-CCCGCCTTAACTGAT----------------------- ---GACATTCCACCA-------------------------T------------------- ------------TGTGATGTGTTCCTGCCCCACT----------TTAACTGAGTGATTA- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------CT--GTGAATTTCCTTCTCCTGG-------------- ----CTC-----------AG-AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCTGCCCC-TGCCCACCAGAGAACAA--C CCTCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGTGCATGAAA------- >LTR7Y_chr2_Sltr_799__chr2_192130386192130819_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------TCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACA TATACACCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAAGGCCCTGC-CCCGCCTTGACTGAT----------------------- ---GACACTCCACCA-------------------------T------------------- ------------TGTGATTTGTTCCTGCCCCACC----------TTAACTGAGCGATTA- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------CT--GTGAATTTCCTTCTCCTGG-------------- ----CTC-----------AG-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCCACCAGAGAACAA--C CCTCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATGA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGTCTG--TTT--GGTGGTCT CTTCACACGGACACGCATGAAA------- >LTR7Y_chr18_2ltr_int_fr_606__chr18_2869844928698881__ TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACA TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAAGCACAAAAGA AGTGA-----AAAGGCCCTGT-CCCGCCTTAACTGAT----------------------- ---GACATTCCACCA-------------------------T------------------- ------------TATGATTTGTTCCTGCCCCACC----------TTAACTGAGTGATTA- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------CT--GTGAATTTCCTTCTCCTGG-------------- ----CTC-----------AG-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCTGCCCC-TGCCCACCAGAGAACAA--C CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATGA-----------AACG- GCCCCATTC-C-T-ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCG AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACTTGAGTGA--------- >LTR7Y_chr20_2ltr_int_fr_908__chr20_4009311040093543_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATTGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACGACCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTCAAGAATCACAAAAGA AGTGA-----AAAGGCCCTGC-CCTGCCTTAACTGAT----------------------- ---GACATTCCACCA-------------------------T------------------- ------------TGTGATTTGTTCCTACCCCACA----------TTAACTGAGTGATTA- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------CT--GTGAATTTCCTTCTCCTGG-------------- ----CTC-----------AG-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-TCCTGCCCC-TGCCCACCAGAGAACAA--T CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACACGCATGAAA------- >LTR7Y_chr15_2ltr_int_fr_507__chr15_5343203053432463__ TGTCAGGCCTCTGAACCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCATG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGATCCACAAAAGA AGTGA-----AAAGGCCCTGC-CCTGCCTTAACTGAT----------------------- ---GACATTCCACCA-------------------------T------------------- ------------TGTGATTTGTTCCTGCCCCACC----------TTAACTGAGGGATTA- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------CT--GTGAATTTCCTTCTCCTGG-------------- ----CTC-----------AG-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCCACCAGAGAACAA--C CCCCTTTGACTGTAATTTTCCATTACCTTCCTA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCCCACGGATGCGCATGAA-------- >LTR7Y_chr5_2ltr_int_fr_1292__chr5_136544968136545393__ TGTCAGGTCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCATG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGACGTAACTGAAGAATCACAAAAGA AGTGA-----AAAGGTCCTGC-CCCGCCTTAACTGAT----------------------- ---GACATTCCACCA-------------------------T------------------- ------------TGTGATTTGTTCCTGCCCCACC----------TTAACTGA----TTA- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------CT--GTGAAT--CATTCTCCTGG-------------- ----CTC-----------AG-AAGCTCCCCAAG--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------GC-CCCAGCCCC-TGCCCACCAGAGAACAA--C CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACA- GCCCCACCC-T-T-AACTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACCTGTACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGATCT CTTCACACGGACGCGCATG---------- >LTR7Y_chr1_2ltr_int_fr_26__chr1_183613210183613641_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACA TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAATA AGTGA-----AAAGGCCCTGC-CCCGCCTTAACTGAT----------------------- ---GACATTCCACCA-------------------------T------------------- ------------TGTGATTTGTTCCTGCCCCACC----------TTAACTGAGTGATTA- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------CT--GTGAATTTCCTTCTCCTGG-------------- ----CTC-----------AG-AAGCTCCCCAAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCTGCCCC-TGCCCACCAGAGAACAA--C CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATTTCCCTTCACTGACTC--TTTTTGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGACACGTGTGA--------- >LTR7u2_chr1_68386004_68391992_3424_ZNF534_ZNF90_KAP1_EncodeTxn_KLF4_GRO5of7_GRO6of7_GRO7of7_proto7y____chr1_6838600468386437____1431 -GTCAGGCCTCTGAGCCCAAG-----------------------TCAAACCATCGCATCC CCTGTGAC---------------------------------------------TTGCATG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAAGGCCCTGC-CCCGCCTTAACTGAT----------------------- ---GACATTCCACCA-------------------------T------------------- ------------TGTGATTTGTTCCTGCCCCACC----------TTAACTGAGTGATTA- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------CT--GTGAATTTCCTTCTCCTGG-------------- ----CTC-----------AG-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCCACCAGAGAACAA--C CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------GACG- GCCCCACCC-T-T-ATCTCCCTTCGCTGACTC--TTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGAGGCGCATGA--------- >LTR7u2_chr8_99943695_99949609_3518_ZNF534_ZNF90_KAP1_EncodeRepressed_FOXP1_KLF4_proto7y____chr8_9994369599944123____1428 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACACCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAA---A AGTGA-----AAAGGACCTGC-CCCGCCTTAACTGAT----------------------- ---GACATTCCACCA-------------------------T------------------- ------------TGTGATTTGTTCCTGCCCCACC----------TTAACTGAGTGATTA- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------CT--GTGAATTTCCTTCTCCTGG-------------- ----CTC-----------AG-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCCACCAGAGAACAA--C CCCCTTTGACTGTAAGTTTCCATTACCTTCCCA-AATCCTATAA-----------AACA- GCCCCACCT-T-T-ATCTCCCTTCGCTGACTC--TTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGACGCGCATGA--------- >LTR7Y_chr6_2ltr_int_fr_1402__chr6_144923175144923606_+_ -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCTATCGCATCC CCTGTGAC---------------------------------------------TTGCACA TATATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAAGGCCCTGC-CCCGCCTTAACTGAT----------------------- ---GACATTCCACCA-------------------------T------------------- ------------TGTGATTTGTTCCTGCCCCACC----------TTAACTGAGTGATTA- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------CT--GTGAATTTCCTTCTCCTGG-------------- ----CTC-----------AG-AAGCTTCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TACCCACCAGAGAACAA--C CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCACTGACTC--TTTTCAGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--CGTGGTCT CTTCACACTGACGTGCATGA--------- >LTR7u2_chr1_230601216_230609094_4759_ZNF534_ZNF90_KAP1_weakenh_KLF4_proto7y____chr1_230601216230601646____1430 -GTCAGGTCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACA TATATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAAGGCCCTGC-CCTGCCTTAACTGAT----------------------- ---GACATTCCACCA-------------------------T------------------- ------------TGTGATTTGTTCCTGCCCCACC----------TTAACTGAGTGATTA- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------CT--GTGAATTTCCTTCTCCTGG-------------- ----CTC-----------AG-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCCACCAGAGAACAA--C CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG- GCCCCACCC-C---ATCTCCCTTTGCTGACTC--TTTTCAGACTCAGACCACCTGCACCC AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGCTCT CTTCACATGGACATGCATGA--------- >LTR7u2_chr9_104870665_104871097_weakenh_SOLO_KLF4_C_proto7y___chr9_104870665104871097___1431 TGTCAGGCCTCTAAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACA TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAAGGCCCTGC-CTCGCCTTAACTGAT----------------------- ---GACGTTCCACCA-------------------------T------------------- ------------TGTGATTTGTTCCTGCCCCACC----------TTAACTGAGTGATTA- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------CT--GTGAATTTCCTTCTCCTGG-------------- ----CTC-----------AG-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCCACCAGAGAACAA--C CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTTGCTGACTC--TTTTCGGACTCAGCCCACCTGCAGCC AGGTGA-----AA--AAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGACGCACATG---------- >LTR7u2_chr1_233688773_233689204_EncodeTxn_SOLO_KLF4_C_proto7y___chr1_233688773233689204___1431 TGTCAGGCCTTTGAGCCCAAG-----------------------CCAAGCCATTGCATCC CCTGTGAC---------------------------------------------TTGCACA TATACACCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAAGGCCCTGC-CCCGCCTTAACTGAT----------------------- ---GACATTCCACCA-------------------------T------------------- ------------TGTGATTTGTTCCTGCCCCACC----------TTAACTGAGTGATTA- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------CT--GTGAATTTCCTTCTCCCGG-------------- ----CTC-----------AA-AAGCTCCCTCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCCACCAGAGAACAA--C CTCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCGCTGACTC--TTTTCAGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGACGTACATA---------- >LTR7u2_chr2_80875799_80880161_4311_ZNF534_k4me3_EncodeRepressed_KLF4_GRO3of7_C_proto7y___chr2_8087979680880161___1365 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGTATCC CCTGTGAC---------------------------------------------TTGCACG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAAAGCCCTGC-CCCGCCTTAACTGAT----------------------- ---GACATTCCACCA-------------------------T------------------- ------------TGTGATTTGTTCCTGCCCCACC----------TTAACTGAGTGATTA- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------CT--GTGAATTTCCTTCTCCTGG-------------- ----CTC-----------CG-AAGCTCCCGCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCCAC------------- ------------------------------------------------------------ --------C-C-C-ATCTCCCTTCGCTGACTC--TTTTTGGACTCAGCCCACCTGTACCC AGGTGA-----AA--TAAACAGCTTTATTGCTCGCACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGTGCATG---------- >LTR7u2_chr4_135167435_135173118_3494_ZNF534_ZNF90_KAP1_EncodeTxn_GRO5of7_GRO6of7_GRO7of7_C_proto7y___chr4_135172689135173118___1429 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC C--GTGAC---------------------------------------------TTGCACG TATATGCCCAGA------------------------------------------------ -----------------------------TAGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAAGGCCCTGC-CCCGACTTAACTGAT----------------------- ---GACATTCCACCA-------------------------T------------------- ------------TGTGATTTGTACCTGCCCCACC----------TTAACTGAGTGATTA- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------CT--GTGAATTTCCTTCTCCTGG-------------- ----CTC-----------AG-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCCACCAGAGAACAA--C CCCCTTTGACTGTCATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG- GCCCCTCCC-C-T-ATCTCCCTTCATTGACTC--TTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCTTTATTGTTCACACAAAGCCTG--TTT--GGTGGTCT CTCCACACGGACGTGCATG---------- >LTR7u2_chr3_81747553_81747984_h3k27ac_EncodeRepressed_SOLO_proto7y____chr3_8174755381747984____1431 -GTCAGGTCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC CCTGTGAC---------------------------------------------TTGCACG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAAGGCCCTGC-CCCGCCTTAGCTGAT----------------------- ---GACATTCCACCA-------------------------T------------------- ------------TGTGATTTGTTCCTGGCCCACC----------TTAACTGAGTGATTA- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------CT--TTGAATTTCCTTCTCCTGG-------------- ----CTC-----------AG-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCCACCAGAGAACAA--C CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTCGCTGACTC--TTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATGA--------- >LTR7u2_chr8_135767191_135773012_3585_ZNF534_KAP1_EncodeRepressed_KLF4_C_proto7y___chr8_135772580135773012___1431 TGTCAGGCCTCTGAGTCCAAG-----------------------CCAAGCCATTGCATCC CCTGTGAC---------------------------------------------TTGCACG TATATACCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAAGATCCTGC-CCCGCCTTAACTGAT----------------------- ---GACATTCCACCA-------------------------T------------------- ------------TGTGATTTGTTCCTGCCCCACC----------TTAACTGAGTGATTA- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------CT--GTGAATTTCCTTCTCCTGG-------------- ----CTC-----------AG-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCTGCCCC-TGCCCACCAGAGAACAA--C CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AATG- GCCCCACCC-C---ATCTCCCTTCGCTGACTC--TTTCCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGATGCGCATGA--------- >LTR7Y_chr6_2ltr_int_fr_1461__chr6_8135072781351160__ TGACAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC CCTGTGAC---------------------------------------------TTGCATG TATATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAAGGCCCTGC-CCTGCCTTAACTGAT----------------------- ---GACATTCCACCA-------------------------T------------------- ------------TGTGATTTGTTCCTGCCCCACC----------TTAACTGAGTGACTA- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------CT--GTGAATTTCCTTCTCCTGG-------------- ----CTC-----------AG-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCCACCAGAAAACAA--C CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AACCCTATAA-----------AATG- GCCCCACCC-C-T-ATCTCCCTTCGCTGACTC--TTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATGAA-------- >LTR7u2_chr6_6027810_6033600_3360_ZNF534_EncodeRepressed_KLF4_wanghigh_chimeric_GRO5of7_GRO6of7_GRO7of7_C_proto7y___chr6_60331876033600___1413 ----------------CCAGG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCATG TATATGCCCAGA------------------------------------------------ -----------------------------TGGTCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAAGGACCTGC-CCCGCCTTAACTGAT----------------------- ---GACATTCCACCA-------------------------T------------------- ------------TGTGATTTGTTCCTGCCCCACC----------TTAACTGAGTGATTA- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAATTTCCTTCTCCTGG-------------- ----CTC-----------AG-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACCCC-TGCCCACCAGAGAACAA--C CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCGCTGACTC--TTTTCGGACTCAGCCCACCTGCACCC AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCATATGGACGCGCATG---------- >LTR7u2_chr4_132492030_132492460_h3k27ac_enh_SOLO_proto7y____chr4_132492030132492460____1429 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCATG TATACGACCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAAGGCCCTGC-CCGGCCTTAACTGAT----------------------- ---GACATTCCACCA-------------------------T------------------- ------------TGTGATTTGTTCCTGCCCCACC----------TTAACTGAGGGATTA- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------CT--GTGAATTTCCTTCTCCTGG-------------- ----CTC-----------AG-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCCACCAGAGAACAA--C CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG- GCCCCACCC-C-T-GTCTCCCTTCCCTGACTC--TTTTCGGACTCAGCCCACCTGCACCT AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTTT CTTCACACGGACGCGAATGA--------- >LTR7u2_chr5_100984292_100990224_3319_ZNF534_ZNF90_KAP1_EncodeRepressed_KLF4_GRO5of7_GRO6of7_GRO7of7_C_proto7y___chr5_100989793100990224___1431 TGTCAGGGCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCATG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAAGGCCCTGC-CCTGCCTTAATTGAT----------------------- ---GACATTCCACCA-------------------------T------------------- ------------TGTGATTTGTTCCTGCCCCACC----------TTAACTGAGTGATTA- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------CT--GTGAATTTCCTTCTCCTGG-------------- ----CTC-----------AG-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCCACCAGAGAACAA--C CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AATG- GCCCCACCC-C-T-ATCTCCCTTGGCTGACTC--TTTTCAGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGCGCATG---------- >LTR7u2_chr5_117046415_117052246_3142_ZNF534_k4me3_EncodeRepressed_GRO3of7_C_proto7y___chr5_117051815117052246___1431 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATAGGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACCGAAGAATCACAAAAGA AGTGA-----AAAGGCCCTGC-CCCACCTTAAATGAT----------------------- ---GACATTCCACCA-------------------------T------------------- ------------TGTGATTTGTTCCTGCCCCACC----------TTAACTGAGTGATTA- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------CCC--------CT--GTCAATTTCCTTCTTCTGG-------------- ----CTC-----------AG-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCTCCCC-TGCCCACCAGAGAACAA--C CCCCTTTGACTATAATTTTCCATTACCTTCCCA-AATCCTGTAA-----------AACA- GCCCCACCC-C-T-ATCTCCCTTCGCTGACTC--TTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--CAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGCACATG---------- >LTR7u2_chr2_16791945_16797703_4656_ZNF534_EncodeRepressed_KLF4_GRO4of7_C_proto7y___chr2_1679727216797703___1431 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACT TATAGGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTCA-----AAAGGCCCTGC-CCCGCCTTAACTGAT----------------------- ---GACATTCCACCA-------------------------C------------------- ------------TGTGATTTGTTCCTACCCCAAC----------TTAACTGAGTGATTA- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAATTTCCTTCTTCTGG-------------- ----CTC-----------AG-AAGCTCCTCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCCACCAGAGAACAA--C CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCGCTGACTC--TTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGATGCTCATG---------- >LTR7u2_chr19_39493404_39493821_SOLO_proto7y____chr19_3949340439493821____1416 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGCC---------------------------------------------TTGCACA TATACACCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAAGGCCCTGC-CCCGCCTTAACTGAT----------------------- ---GACATTCCACCA-------------------------T------------------- ------------TGTGATTTGTTCCTGCCCCACC----------TTAACTGAGTGATTA- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------CT--GCAAATTTCCTTCTCCTGG-------------- ----CTC-----------AG-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCG-------------- -CCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATACTATAA-----------AACA- GCCCCACCC-C-T-ATCTCCCTTCGCTGACTC--TTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATGA--------- >LTR7u2_chr13_66141332_66147036_3391_ZNF534_EncodeRepressed_GRO5of7_GRO6of7_GRO7of7_C_proto7y___chr13_6614660766147036___1429 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCGCCTTAACTGAT----------------------- ---GACATTCCACCA-------------------------T------------------- ------------TGTGATTTGTTCCTGCCCCACC----------TTAACTGAATGATTA- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------CT--GCGAATTTCCTTCTCCTGG-------------- ----CTC-----------AG-AAACTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACCTC-TGCCCACCAGAGAACAA--C CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTTGCTGACTC--TTTTCAGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACTGATGTGCATG---------- >LTR7up1_chr8_1801298_1801747_h3k27ac_enh_SOLO_KLF4_NANOG_44108_7up_7up_phylo____chr8_18012981801747____1449 --TCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCTGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACT--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CATCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCCCTTTGTCTGTAATTTTCCTTTACCTACGCA-AATCCTATAA-----------AACG- GTCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA---AA----TAAACAGCCATTTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATGA--------- >LTR7up1_chr1_232118115_232123945_4894_transcribed_ZNF534_ZNF90_KAP1_k4me3_TSS_FOXP1_KLF4_NANOG_44108_SMAD11_SOX2_TCF4_7up_wanghigh_GRO1of7_7up_phylo____chr1_232118115232118565____1450 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACA TATATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTGCACCACAAAAGAAGTGTAAATGGCTGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCTAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACA- GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTGAGCCCGCTTGCACCC AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATGA--------- >LTR7up1_chr6_90670205_90675442_3469_1_k4me3_EncodeTxn_KLF4_NANOG_44108_SMAD11_SOX2_TCF4_7up_C_7up_phylo___chr6_9067499290675442___1450 TGTCAGGCCTCTGAGCCCAAA-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTGAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAGTGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCGACTCC-TGCCCGCCAGAGAACAA-AC TCCCTTTGACTGTAATTTTCCTTTACCTACACA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTCCCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--AGTGGTCT CTTCACACGGACGCGCATG---------- >LTR7up1_chr4_16997747_17003925_3437_ZNF534_KAP1_k4me3_EncodeTxn_KLF4_MED1_NANOG_44108_SMAD11_SOX2_TCF4_7up_GRO1of7_7up_phylo____chr4_1699774716998198____1448 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC C--GTGAC---------------------------------------------TTGCACG TATATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CTCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCTTTCACTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC AGGTTA---AA----TAAACAGCCATGTTGCTCACGCAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATGA--------- >LTR7up1_chr6_6036099_6036548_EncodeRepressed_SOLO_KLF4_NANOG_7up_chimeric_C_7up_phylo___chr6_60360996036548___1449 TGTCAGGCCTCTGAGGCCAAG-----------------------CCAAGTCATCGCATCC CCTGTGAC---------------------------------------------TTGCGCG TATATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCATGG-------------- ----CTCACCCTGGCTCAAA-AA-CACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTGCCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTCACTGACTCTCTTTTCAGACTCAGCCTGCCTGCACCC AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACACGCATG---------- >LTR7up1_chrX_98524246_98530070_4863_ZNF534_ZNF90_KAP1_EncodeTxn_FOXP1_KLF4_NANOG_TCF4_FOXA1_7up_C_7up_phylo___chrX_9852962098530070___1450 TGTCAGGCCTCCGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GATATTCCACCACAAAAGAAGTGCAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGTGCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCCCCCTTCACTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA---AA----TAAATAGCCATGTTGCTCACAAAAAGCCTG--TTT--AGTGGTCT CTTCACACGGACACGCATG---------- >LTR7up1_chrX_114601272_114607242_3469_ZNF534_KAP1_k4me3_EncodeTxn_KLF4_MED1_NANOG_44108_TCF4_7up_wanghigh_C_7up_phylo___chrX_114606794114607242___1448 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATTGCATCC CCTGTGAC---------------------------------------------TTGCACG TATATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATAAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----ATCATCCTGGCTCAA--AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-C-ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCACTTGCACCC AGGTGA---AA----TA-ACAGCCATGTTGCTCACACGAAGCCTG--TTT--AGTGGTCT CTTCACACGGACACACATG---------- >LTR7up1_chr6_131338800_131344564_3249_ZNF534_ZNF90_KAP1_k27ac_EncodeTxn_KLF4_NANOG_44108_TCF4_FOXA1_7up_GRO1of7_7up_phylo____chr6_131338800131339250____1450 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATAAGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCATCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCAGTTCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AGGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACA- GCCCCACCC-T-T-ATCTCCCTTCACTGACTCTCTTTTCTGACTCAGCCTACCTGCACCC AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGACACGCATGA--------- >LTR7up1_chr12_11462169_11468020_3219_ZNF534_ZNF90_KAP1_EncodeTxn_KLF4_NANOG_TCF4_FOXA1_7up_C_7up_phylo___chr12_1146757111468020___1449 TGTCAGGCCTCTGAGCTGAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACACCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACTGCAAAAGAAATATAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAC-ACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-TCCCACTCC-TGCCCGCCAGATAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACA- GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCCGACTCAGCCTGCCTGCACCC AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTC--TTT--GGTGGTCT CTTCACATGGACGCGCATG---------- >LTR7up1_chr6_131323296_131329137_3112_ZNF534_ZNF90_KAP1_k4me3_EncodeTxn_FOXP1_KLF4_NANOG_44108_TCF4_7up_GRO1of7_7up_phylo____chr6_131323296131323746____1450 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATAAGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACTACAAAAGAAGTGAAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AACCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTTCG-------------- ---------------------------AC-CCCGACTCC-TGCCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACA- GCCCCACCC-T-T-ATCTCCCTTCACTGACTCTCTTTTCCGACTCAGCCTACCTGCACCC AGGTGA---AA----TAAACAGCCATGTTGCTCACGCAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATGA--------- >LTR7up1_chr7_122816729_122822998_3415_ZNF534_ZNF90_KAP1_EncodeTxn_KLF4_NANOG_FOXA1_7up_7up_phylo____chr7_122816729122817176____1447 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCATAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCGATCCT------------------- ------------TG------------------CC----------TTAA----ATGATGGC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAA----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAAC----C CCCCTTTGACTGTAATTTTCCTTTACCTACTCA-AATCCTATAA-----------AACG- GCCCCACCC-A-T-ATCTCCCTTCGCTAACTCTCTTTTCAGACTCAGCCCGCCTGCACCC AGGTGA---AA----TAAGCAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCAAACGGACGCACATGA--------- >LTR7up1_chr6_142015666_142021782_3343_ZNF534_ZNF90_KAP1_k4me3_TSSflanking_KLF4_NANOG_7up_wanghigh_GRO1of7_7up_phylo____chr6_142015666142016117____1450 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCACCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATATCCCCAGA------------------------------------------------ -----------------------------TGGCCTGATGTAACTGAAGAATCACAAAAGA AGTGA-----ACATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTAG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCTA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCACATGA--------- >LTR7up1_chr8_7402290_7408174_3225_ZNF534_KAP1_weakenh_KLF4_NANOG_TCF4_7up_GRO5of7_GRO6of7_GRO7of7_7up_phylo____chr8_74022907402740____1450 -GTCAGGCGTCTCAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCATG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACAGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGACGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGTCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCA-------------- ---------------------------AC-CCCTACTCC-TGCCCGCCAGAGAACAA-AC CCCTTTTGACTGTATTTTTCCTTTACCTACCCA-AATCCTATAA-----------AACA- GCCCCACAC-T-T-TTCTCCCTTCACTGACTCCCTTTTTGGATTCAGCCCACCTGCACTC AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCACATGA--------- >LTR7up1_chr8_7903419_7909304_3197_ZNF534_KAP1_EncodeRepressed_KLF4_NANOG_7up_GRO5of7_GRO6of7_GRO7of7_C_7up_phylo___chr8_79088547909304___1450 TGTCAGGCGTCTCAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCATG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACAGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGACGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGTCTCAAA-AAACACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCA-------------- ---------------------------AC-CCCTACTCC-TGCCCGCCAGAGAACAA-AC CCCTTTTGACTGTATTTTTCCTTTACCTACCCA-AATCCTATAA-----------AACA- GCCCCACAC-T-T-TTCTCCCTTCACTGACTCCCTTTTTGGATTCAGCCCACCTGCACTC AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCACATG---------- >LTR7up1_chr13_90848573_90854278_3504_ZNF534_k4me3_EncodeTxn_FOXP1_KLF4_NANOG_TCF4_FOXA1_7up_GRO3of7_C_7up_phylo___chr13_9085383190854278___1447 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC CCTGTGAC---------------------------------------------TTGCACG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAG---TGTAAATAGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGACGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAGA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AA CCCCTTTGACTGTAATTTTCCTTTACCTTCCCA-AAACCTATAA-----------AACA- GTGCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTCTTTGGACTCAGCCCGCCTGCACCC AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACGCCGACGCACATG---------- >LTR7up1_chr20_12753820_12759634_3666_transcribed_ZNF534_k4me3_enh_KLF4_NANOG_44108_SMAD11_TCF4_7up_wanghigh_GRO1of7_7up_phylo____chr20_1275382012754274____1450 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC CCTGTGAC---------------------------------------------TTGCACG TATAAGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCTACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGCCTGGTTCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CACATCCTGGCTCAAA-AAGCACCCCCAA--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCCATTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTTGGACTCAGCCCACCTGCACCC AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCACATGA--------- >LTR7up1_chr3_46246275_46252065_4913_ZNF534_ZNF90_KAP1_EncodeRepressed_KLF4_NANOG_7up_C_7up_phylo___chr3_4625160846252065___1450 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATTGCATCC CCTGTGAC---------------------------------------------TTGCACA TATATGCCCAGA------------------------------------------------ -----------------------------TGTCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACACTCCACCACAAAAGAAGTGTAAATGGCTGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTAG-------------- ----CTCATCCTGGCTAGGA-AATCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAA-AC CCCCTTTGACTGCAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACA- GCCCCACCC-T-T-ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACTC AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACAAGGATGCACATG---------- >LTR7up1_chr4_166716125_166722054_3445_ZNF534_KAP1_enh_FOXP1_KLF4_NANOG_44108_SOX2_TCF4_7up_GRO1of7_7up_phylo____chr4_166716125166716575____1450 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAGGCCATTGCATCC CCTGTGAC---------------------------------------------TTGCATG TATAAGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCTGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCTACTCC-TGCCTGCCAGAGAACAA-AC CCCCTTTGACTGCAATTTTCCTTTACCTGCCCA-AATCCTATAA-----------AATG- GTCCCACCC-T-T-ATCTCCCTTTGCTGACTCTCTTTTTGGACTCAGCCTGCCTGCACTC AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATGA--------- >LTR7up1_chr13_88512819_88518743_3559_ZNF534_KAP1_EncodeRepressed_KLF4_NANOG_44108_SOX2_TCF4_7up_GRO3of7_C_7up_phylo___chr13_8851829388518743___1450 TGTAGGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCAGT TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTATAAATGGCTGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TG--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TCCCTGCCAGAGAACAA-AT CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACA- GCCCCACCC-T-T-ATCTCCCTTCGTTGACTCTCTTTTTGGACTCAGCCGGCCTGCACCC AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCACATG---------- >LTR7up1_chr8_68972944_68978769_3408_ZNF534_KAP1_EncodeRepressed_FOXP1_KLF4_NANOG_7up_7up_phylo____chr8_6897294468973429____1450 -GTCGGGCCTCTGAGCCCAAG-----------------------CCAAGCCATTGCATCC TCTGTGAC---------------------------------------------TTGCACG TATATGCCCAGA------------------------------------------------ -----------------------------TGGTCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATGTGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCTGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTTGGACTCAGCCTGCCTGCACCC AGGTGA---AA----TCAACAGCCATGGTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATGA--------- >LTR7up1_chr1_232229629_232234999_3450_ZNF534_KAP1_EncodeTxn_KLF4_NANOG_FOXA1_7up_GRO3of7_C_7up_phylo___chr1_232234550232234999___1449 TGTCAGGCCTCTGAGCCCAAG-----------------------ACAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCAACACAAAAGAAGTGTAAATGGCTGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AACCACCCTCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACA- GCCCCATCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTTGGACTCAGCCTGCCTGCACCC AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGT-GTCT CTTCACACGGACGCGCATG---------- >LTR7up1_chr13_55654931_55660802_3446_ZNF534_KAP1_k4me3_TSS_FOXP1_KLF4_NANOG_44108_SMAD11_SOX2_TCF4_FOXA1_7up_wanghigh_GRO1of7_C_7up_phylo___chr13_5566035755660802___1445 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATTGCATCC CCTGTGAC---------------------------------------------TTGCACG TATATACCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCTGATCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACTTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAA------ CCCCCTTGACTGTAATTTTCCTTTACCTACCTA-AATCCTATAA-----------AACG- GCCCCATCC-T-T-ATCTCCCTTCACTGACTCTCTTTCTGGACTCAGCCCACCTGCACCC AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACACGCATG---------- >LTR7up1_chr10_6629579_6635541_3454_ZNF534_KAP1_EncodeTxn_KLF4_NANOG_FOXA1_7up_C_7up_phylo___chr10_66350936635541___1448 TGTCACGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG --TATACCCAGA------------------------------------------------ -----------------------------TGACCTGAAGTAACTGAAGAATCATAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCTGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTAG-------------- ----CTCATCCTGACTCAAA-AAGCACCTCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GGG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C-C-ATCTCCCTTCACTGACTCTATTTTTGGACTCAGCCTGCCTGCGCCC AGGTGA---AA----TAAACAGCCATATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACACGCATG---------- >LTR7up1_chr7_24396245_24401985_4981_transcribed_ZNF534_k4me3_weakenh_FOXP1_KLF4_MED1_NANOG_44108_SOX2_FOXA1_7up_wanghigh_GRO1of7_7up_phylo____chr7_2439624524396697____1450 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCCGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACGTACCCA-AATCCTATAA-----------AACG- GCCCCACCT-T-T-ATCTGCCTTCCCTGACTGTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA---AA----TAAACAGCCACGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATGA--------- >LTR7up1_chr2_7108636071090997_3591_ZNF534_EncodeTxn_KLF4_NANOG_FOXA1_7up_chimeric_GRO2of7__chr2_7109054771090997___1450 TGACAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACCGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCAACTTAACTGAT----------------------- ---GACATGCCACCACAAAAGAAGTGTAATTGGCCAGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAACACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAA-AC CCCCTTTGAGTGTAGTTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCTCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATG---------- >LTR7up1_chr1_238379439_238379888_h3k27ac_enh_SOLO_KLF4_NANOG_44108_TCF4_7up_C_7up_phylo___chr1_238379439238379888___1449 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATTCGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCTCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAA--AAACACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAA-AC TCCCTTTGAGTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATG---------- >LTR7up1_chrX_4891614_4897331_3482_ZNF534_EncodeRepressed_FOXP1_KLF4_NANOG_44108_TCF4_7up_7up_phylo____chrX_48916144892064____1450 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACA TATATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCA-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGGGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTTCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATGA--------- >LTR7up1_chr12_103222116_103222567_EncodeTxn_SOLO_KLF4_NANOG_SOX2_7up_C_7up_phylo___chr12_103222116103222567___1450 TGTCAGGCCTCTGAGCTCAAG-----------------------CCAAGCTATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TGTATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACTACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----GTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCA-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTTGTACTCAGCCCGCCTGCACCC AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCGTG--TTT--GGTGGTCT CTTCACAGGGACGCGCATG---------- >LTR7up1_chr3_115793483_115799166_3515_ZNF534_k4me3_EncodeRepressed_FOXP1_KLF4_NANOG_7up_wanghigh_GRO3of7_C_7up_phylo___chr3_115798717115799166___1449 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATTGCATCC CCTGTGAC---------------------------------------------TTGCACG TATATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCTCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCTGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AA-CACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCA-------------- ---------------------------AC-CCCTACTCC-TGCCCACCAGAGAACAA-AC CCTCTTTGACTGTAATCTTCCTTTACCTACCCA-AATCCTATAA-----------AATG- GCCCCACCC-T-T-ATATCCCTTCCCTGACTCTCTTTTCGAACTCAGCCCGCCTGCACCC AGGTGA---AA----TAAACAGCCATGTTGTTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGACGCGCATG---------- >LTR7up1_chr9_115839178_115844929_3491_ZNF534_KAP1_k4me3_EncodeRepressed_KLF4_NANOG_44108_7up_GRO4of7_C_7up_phylo___chr9_115844479115844929___1450 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC CCTGTGAC---------------------------------------------TTGCACA TATATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCTGGTCCT------------------- ------------TG------------------CT----------TTAA----GGGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCA-------------- ---------------------------TC-CCCTACTCC-TGCCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTCACTGACTCTCTTTTCGCATTCAGCCCGCCTGCACCC AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGAAGCGCATG---------- >LTR7up1_chr1_72980446_72985490_3299_ZNF534_KAP1_k4me3_KLF4_NANOG_44108_FOXA1_7up_GRO4of7_C_7up_phylo___chr1_7298504172985490___1449 TGTCAGGCCTCTGAGCCCAGG-----------------------CCAAGCCATCACATCC CCTGTGAC---------------------------------------------TTGCACA TATATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC GTT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCAC-CCCAT--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TCCCCGCCACAGAACAA-AC CCCCTTTGACTGTCATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATTTCCCTTCGCGGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGTGCATG---------- >LTR7up1_chr5_106978588_106984086_3273_transcribed_k4me3_TSS_KLF4_NANOG_44108_SOX2_TCF4_FOXA1_7up_wanghigh_GRO1of7_7up_phylo____chr5_106978588106979038____1448 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCTCATCC CCTGTGAC---------------------------------------------TTGCACG TATATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCTTGGCTCAAA-AAGCAACCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCA-------------- ---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTACAA-----------AACG- GCCCCATCC-T-T-ATCTCCCATCGCTGACTCTCTTTTCCGACTCAGCCCGCCTGCACCC AGGTGA---AA----TAAA--GTCATGTTGCTCATACAAAGCCCG--TTT--GGTGGTCT CTTCACACGGACGCGCATGA--------- >LTR7up1_chr5_153449687_153455430_3384_ZNF534_EncodeTxn_FOXP1_KLF4_NANOG_7up_C_7up_phylo___chr5_153454980153455430___1450 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCTATCGCATCC TCTGTGAC---------------------------------------------TTGCACG TATATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATGTGTCCTGC-CCCAACTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTCTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTGTAA-----------AACG- GCCTCATCC-T-T-ATCTCCCTTTGCTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATG---------- >LTR7up1_chr10_95231193_95231643_h3k27ac_enh_SOLO_KLF4_MED1_NANOG_44108_SMAD11_TCF4_7up_7up_phylo____chr10_9523119395231643____1450 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TAAAAGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AT-CCCCACTCC-TGCCCACCAGAGAACCA-AC CCCCTTTGATTGTAATTTTCCTTTACCTACCCA-AATCCTGTAA-----------AATG- GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGCGCATGA--------- >LTR7up1_chr3_187175504187181262_5079_ZNF534_k4me3_enh_FOXP1_KLF4_NANOG_OCT4_SOX2_TCF4_FOXA1_7up_wanghigh_chimeric_GRO2of7__chr3_187180813187181262___1449 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC CCTGTGAC---------------------------------------------TTGCACT TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACTA-GC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATTCTGTAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGCGCATG---------- >LTR7up1_chr11_23183934_23189744_3323_ZNF534_KAP1_EncodeRepressed_KLF4_NANOG_SOX2_7up_GRO4of7_C_7up_phylo___chr11_2318929323189744___1448 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGACATCGCATCC CCTGTCAC---------------------------------------------TTGCACA TATATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCAGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CATCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTCGCTGAC--TCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGATGCACATG---------- >LTR7up1_chr1_7298780172993602_3646_ZNF534_KAP1_KLF4_NANOG_OCT4_TCF4_7up_GRO2of7__chr1_7299315672993602___1446 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACA TATATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTAC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCAGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAT--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-TCCCACTCC-TGCCCGCCACAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AATG- GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCTACCTGCACGC AGGTGA---AA----TAAACAGCCATGTTTCTCACACAAAGCCTG--TTT------GTCT CTTCACATGGACGCACATG---------- >LTR7up1_chrX_112530380_112536357_3408_ZNF534_ZNF90_KAP1_EncodeTxn_KLF4_NANOG_44108_SOX2_7up_7up_phylo____chrX_112530380112530831____1450 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACA TATATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCAGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------AAG----CATCTTGAG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTCACTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGATGCGCATGA--------- >LTR7up1_chr10_54166676_54172501_3524_ZNF534_EncodeTxn_KLF4_NANOG_44108_SMAD11_7up_chimeric_7up_phylo____chr10_5416667654167126____1450 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACT TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCAGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTCG-------------- ----CTCATCCTGGCTCAAA-AAGCACCTCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AA-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTATCCA-AATCCTATAA-----------AACG- GCCTCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCT GGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GATGGTCT CTTCACATGGACGCGCATGA--------- >LTR7up1_chr9_74085583_74091436_4739_transcribed_ZNF534_k4me3_TSS_FOXP1_KLF4_MED1_NANOG_44108_SMAD11_SOX2_TCF4_7up_wanghigh_GRO1of7_7up_phylo_____chr9_7408558374086032____1449 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC CCTGTGAC---------------------------------------------TTGCACA TATATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCAGTCCT------------------- ------------TG------------------CC----------TTAA----TTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGACTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTATCCA-A-TCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGCGCATGA--------- >LTR7up1_chr7_48146274_48146724_h3k27ac_EncodeRepressed_SOLO_KLF4_NANOG_7up_C_7up_phylo___chr7_4814627448146724___1450 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGT-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCAGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCTCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCC-------------- ---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACACA-AATCCTATAA-----------AACT- GCCCCACCC-T-T-ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACACGCATG---------- >LTR7up1_chr10_58860995_58867331_3664_ZNF534_KAP1_EncodeRepressed_KLF4_NANOG_FOXA1_7up_GRO4of7_C_7up_phylo___chr10_5886688158867331___1450 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG AATATGCCCTGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGT-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCAGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AGCG- GCCCCACCC-T-T-ATCTCCCTTTGCTGACTCTCTTTTCGGACGCAGCCCGCCTGCACCC AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACACACATG---------- >LTR7up1_chr3_190920164_190925860_3402_ZNF534_KAP1_EncodeRepressed_KLF4_NANOG_FOXA1_7up_7up_phylo____chr3_190920164190920610____1446 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------CTGCACA TATATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----CTATGCCCTGC-CCCATCTTAACTGAT----------------------- ---GACATTCCACCACAAAA---GTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AA-CACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCTACTCC-TGCCCACCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AAGG- GCCCCACCC-T-T-ATCTACCTTTGCTGACTCTCTTTTCGGACGCAGCCCGCCTGCACCG AGGTGA---AA----TAAACAGCCACGTTGCTCACACAAAGCCTG--TCT--GGTGGTCT CTTCACATGGACACACATGA--------- >LTR7up1_chr4_119993664_119999666_3339_transcribed_ZNF534_k4me3_TSS_KLF4_NANOG_44108_SOX2_7up_wanghigh_GRO1of7_7up_phylo____chr4_119993664119994116____1450 -GTCAGGCCTCCGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-CC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AATG- GCCCCATCC-T-T-ATCTCCCTTCGCTGACTCTCTCTTCGGACTCAGCCCGCCTGCACCC AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGCGCATGA--------- >LTR7up1_chrX_111543807_111549673_3461_ZNF534_EncodeTxn_KLF4_MED1_NANOG_44108_SMAD11_SOX2_7up_GRO1of7_7up_phylo____chrX_111543807111544258____1450 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCTCATCC CCTGTGAC---------------------------------------------TTGCACG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGATTCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTCCCTAG-------------- ----CTCATCCTGGCACAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AAAG- GCCCCACCC-T-T-ATCTCCCTTCCCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGCGCATGA--------- >LTR7up1_chr5_7635725676363071_3493_ZNF534_k4me3_EncodeRepressed_FOXP1_KLF4_NANOG_OCT4_7up_GRO2of7__chr5_7635725676357705____1449 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACGTCC CCTGTGAC---------------------------------------------TTGCACG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTAAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AA-CACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCCCTTTGACTATAATTTTCCTTTACCTGCCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCTTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCTCATGGACGCGCATGA--------- >LTR7up1_chr2_77088247_77094030_3397_transcribed_ZNF534_k4me3_TSS_FOXP1_KLF4_NANOG_44108_SMAD11_SOX2_TCF4_7up_wanghigh_chimeric_GRO1of7_7up_phylo_____chr2_7708824777088674____1427 -----------------------------------------------AGCAATCGCGTCC CCTGTGAC---------------------------------------------TTGCACG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTTAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGACCGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCGAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCATTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATGA--------- >LTR7up1_chr3_60672203_60672653_h3k27ac_EncodeTxn_SOLO_FOXP1_KLF4_NANOG_44108_SOX2_7up_C_7up_phylo___chr3_6067220360672653___1450 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCCGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CTCACCTTAACTGAT----------------------- ---GACATTCCATCACAAAAGAAGTGTAAATGGCTGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTAG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCAGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AATG- GCCCCACCC-T-T-ATCTCCCTTCGCTAACTCTCTTTTTGGACTCAGCCCGCCTGCACCC AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGTGCATG---------- >LTR7up1_chr9_99675451_99675901_EncodeRepressed_SOLO_KLF4_NANOG_7up_7up_phylo____chr9_9967545199675901____1450 -GTCAGGCCTCTGAGCTCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCTGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCGC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCCCTGTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AATG- GCCCCACCC-T-T-ATCTCCCTTTGCCAACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGACGTGCATGA--------- >LTR7up1_chr6_120462634_120468133_3347_ZNF534_k4me3_EncodeRepressed_KLF4_NANOG_7up_GRO5of7_GRO6of7_GRO7of7_C_7up_phylo___chr6_120467683120468133___1450 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCATG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCATAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAGCTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCGAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGGACAA-AC CCCCTTTGACTGTAATTTTCATTTACCTACCCA-AATCCTATAA-----------AATG- GCCCCACCC-T-T-ATCTCCCTTCGCGGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGACGCGCATG---------- >LTR7up1_chr10_20370846_20371294_h3k4me3_TSS_SOLO_KLF4_NANOG_44108_SOX2_TCF4_7up_C_7up_phylo___chr10_2037084620371294___1448 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATGGCATCC CCTGTGAC---------------------------------------------TTGCATG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA CATGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGCGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAGA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCA-------------- ---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTATCTACCCA-AATCATATAA-----------AATC- GTCCCACCC-T-T-ATCTCCCTTCGCTGACTC--TTTTCGGACTCAGCCCGCCTGCATCC AGGTGA---AA----TAAACAGCTATGTTGCTCACACAAAGTCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATG---------- >LTR7up1_chr13_66226369_66232340_3265_ZNF534_ZNF90_KAP1_EncodeTxn_KLF4_NANOG_SOX2_FOXA1_7up_C_7up_phylo___chr13_6623189066232340___1450 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCATG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATACGCCCTGC-CCCACCTTGACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCCATCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GCC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAGA-AAACACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCA-------------- ---------------------------AC-CCCTACTCC-TGCCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AATG- GCCCCACCC-T-T-ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGATGCGCATG---------- >LTR7up1_chr3_98396749_98397196_EncodeRepressed_SOLO_FOXP1_KLF4_NANOG_44108_7up_7up_phylo____chr3_9839674998397196____1447 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCA-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AATG- GCCCCACCC-T-T-ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--G---GTCT CTTCACATGGACGCACATGA--------- >LTR7up1_chr6_114422439114428297_2444_ZNF534_k4me3_TSSflanking_FOXP1_KLF4_NANOG_OCT4_SOX2_FOXA1_7up_wanghigh_GRO2of7__chr6_114427847114428297___1450 TGTCAGGCCTTTGAGCCCAAG-----------------------TCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCATG TATACACCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAAACACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTAAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CATCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCGGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AATG- TCCCCACCC-T-T-ATCTCCCTTTGCTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAACCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATG---------- >LTR7up1_chr12_4018541_4023694_3517_ZNF534_k4me3_EncodeTxn_KLF4_NANOG_TCF4_7up_GRO1of7_7up_phylo____chr12_40185414018991____1450 -GACAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTATAAATGGTCGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCCGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCG-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA---AA----TACACAGCCATGTTGCTCACACGAAGCCTG--TTT--GTTGGTCT CTTCACACAGACGCGCATGA--------- >LTR7up1_chr21_40954769_40960696_3256_ZNF534_KAP1_EncodeTxn_FOXP1_KLF4_NANOG_SMAD11_7up_GRO3of7_7up_phylo____chr21_4095476940955218____1449 -GTCAGGCCTCTGAGCCCATG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAACAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------AC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCGCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AG-TGA---AA----TACACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGCACGGGCATGA--------- >LTR7up1_chr2_114790472_114790923_EncodeTxn_SOLO_KLF4_NANOG_SOX2_7up_C_7up_phylo___chr2_114790472114790923___1450 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------CTGCACG TATTCGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATACGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTATAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC AGT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTTCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCT-T-T-ATCTCCCTTTGCGGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA---AA----TACACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGCCT CTTCACACGGACGCGCATG---------- >LTR7up1_chr22_24691086_24691536_h3k27ac_enh_SOLO_KLF4_NANOG_SOX2_TCF4_7up_C_7up_phylo___chr22_2469108624691536___1450 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACGCCCAGA------------------------------------------------ -----------------------------AGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----CTATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGCAAATGGCCGGCCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------GAG----CACCTTGCA-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCAAAC-T-T-ATCTCCCTTGGCTGACTCTCTTTTCGGACTCAGCCCGTCTGCACCC AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATG---------- >LTR7up1_chr10_90081018_90086792_4759_ZNF534_k4me3_KLF4_NANOG_FOXA1_7up_wanghigh_C_7up_phylo___chr10_9008634190086792___1448 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCATG GATATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTAAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCC----------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ---------------------------------------------ACCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTCACTGACT--CTTTTCGGACTCAGCCTGCCTGCACCC AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACACGCATG---------- >LTR7up1_chr13_41159944_41160425_h3k27ac_weakenh_SOLO_FOXP1_KLF4_NANOG_7up_7up_phylo____chr13_4115994441160425____1419 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCATG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCTTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCC----------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ---------------------------------------------GCCAGACAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTCGATGACT--CTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACACGCATGA--------- >LTR7up1_chr13_51169866_51175006_3539_transcribed_ZNF534_k4me3_TSS_FOXP1_KLF4_MED1_NANOG_44108_SMAD11_SOX2_TCF4_7up_wanghigh_GRO1of7_7up_phylo_____chr13_5116986651170314____1417 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCATG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCTTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ACT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCC----------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ---------------------------------------------GCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCGTTTGCTGACT--CTTTTCGGACTCAGCCTGCCTGCACCC AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATGA--------- >LTR7up1_chr9_97214494_97220014_2573_transcribed_ZNF534_k4me3_TSS_KLF4_MED1_NANOG_44108_SOX2_TCF4_FOXA1_7up_wanghigh_GRO1of7_7up_phylo____chr9_9721449497214965____1409 -GTCAGGCCTCTGAGCCTAAG-----------------------CCAAGCCATCGCATCC TCTGTGAC---------------------------------------------TTGCACG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAAA AGTGA-----ATATGCCTTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- --------------CTCAAA-AAGCACCCCC----------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ---------------------------------------------GCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCTA-AATCTTACAA-----------AACG- GCCCCACCT-T-T-ATCTCCCTTGGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACACACATGA--------- >LTR7up1_chr1_212910008_212914681_3500_ZNF534_k4me3_TSS_FOXP1_KLF4_MED1_NANOG_44108_SMAD11_SOX2_TCF4_FOXA1_7up_wanghigh_GRO1of7_7up_phylo_____chr1_212910008212910445____1406 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCTTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACACCC----------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ---------------------------------------------GCCAGAGAACAA-AC CTCCTTTCACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTCTTCGAACTCAGCCCGCCTGCACCC AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACA---------------------- >LTR7up1_chr1_55022708_55028369_3386_ZNF534_ZNF90_KAP1_k4me3_EncodeTxn_KLF4_NANOG_FOXA1_7up_chimeric_7up_phylo____chr1_5502270855023157____1418 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCTGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----TTCATCCTGGCTCAAA-AAGCACCCCC----------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ---------------------------------------------GCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCTACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGATGCACATG---------- >LTR7up1_chrX_114466672_114472531_3446_transcribed_ZNF534_k4me3_EncodeTxn_FOXP1_KLF4_MED1_NANOG_44108_SMAD11_SOX2_TCF4_7up_wanghigh_GRO1of7_7up_phylo_____chrX_114466672114467121____1418 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAAATGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----ATCATCCTGGCTCAAA-A-GCACCCCC----------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ---------------------------------------------GCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCTACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC AGGTGA---AA----TAAACAGCCACGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACACACATGA--------- >LTR7up1_chr20_1335788013362689_1823_ZNF534_k4me3_weakenh_FOXP1_KLF4_NANOG_OCT4_7up_wanghigh_GRO2of7__chr20_1335788013358330____1450 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATAGGCCCTGC-CGCACCTTAACTGAT----------------------- ---GAAATTCCCCCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTGCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCTCACTCC-TGCCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTCGCTGACTTTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATGA--------- >LTR7up1_chr6_128746106_128746587_h3k27ac_weakenh_SOLO_KLF4_NANOG_44108_SOX2_7up_C_7up_phylo___chr6_128746106128746587___1450 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCATCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCAGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTGCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACTC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTAT CTTCACACGGACGCGCATG---------- >LTR7up1_chr21_5600080_5600530_SOLO_7up_C_7up_phylo___chr21_56000805600530___1450 TGTCAGGCCTCTGAGACCAAG-----------------------CCAAGCCATCGCATCC CCCGTGAC---------------------------------------------TTGCACG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAATA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCATAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAGAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CATCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCTCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACGCAGCCCGCGTGCACCC AGGTGA---AA----TAAACAGCCATGTTGCTCACACACAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATG---------- >LTR7up1_chr21_7095306_7095756_SOLO_7up_C_7up_phylo___chr21_70953067095756___1450 TGTCAGGCCTCTGAGACCAAG-----------------------CCAAGCCATCGCATCC CCCGTGAC---------------------------------------------TTGCACG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAATA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCATAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAGAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CATCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCTCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACGCAGCCCGCGTGCACCC AGGTGA---AA----TAAACAGCCATGTTGCTCACACACAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATG---------- >LTR7up1_chr21_7477084_7477534_SOLO_7up_C_7up_phylo___chr21_74770847477534___1450 TGTCAGGCCTCTGAGACCAAG-----------------------CCAAGCCATCGCATCC CCCGTGAC---------------------------------------------TTGCACG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAATA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCATAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAGAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CATCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCTCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACGCAGCCCGCGTGCACCC AGGTGA---AA----TAAACAGCCATGTTGCTCACACACAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATG---------- >LTR7up1_chr21_6220440_6220890_SOLO_7up_7up_phylo____chr21_62204406220890____1450 -GTCAGGCCTCTGAGACCAAG-----------------------CCAAGCCATCGCATCC CCCGTGAC---------------------------------------------TTGCACG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAATA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCATAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAGAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CATCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCTCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACGCAGCCCGCGTGCACCC AGGTGA---AA----TAAACAGCCATGTTGCTCACACACAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATGA--------- >LTR7up1_chr21_7660871_7661321_SOLO_7up_7up_phylo____chr21_76608717661321____1450 -GTCAGGCCTCTGAGACCAAG-----------------------CCAAGCCATCGCATCC CCCGTGAC---------------------------------------------TTGCACG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAATA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCATAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAGAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CATCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCTCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACGCAGCCCGCGTGCACCC AGGTGA---AA----TAAACAGCCATGTTGCTCACACACAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATGA--------- >LTR7up1_chr12_67766804_67772346_3494_ZNF534_KAP1_k4me3_enh_KLF4_NANOG_44108_FOXA1_7up_GRO4of7_C_7up_phylo___chr12_6777189667772346___1450 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGACGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCTACTCC-TGCCCGCCAGAAAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACA- GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTTTTTTCAGACTCAGCCCGCCTGCACCC AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACCGACGCGCATG---------- >LTR7up1_chr2_117278753_117284509_3404_transcribed_ZNF534_k4me3_weakenh_FOXP1_KLF4_NANOG_44108_SOX2_TCF4_FOXA1_7up_wanghigh_GRO1of7_7up_phylo____chr2_117278753117279203____1450 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TACCCGCCAGAGAACAA-AC TCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACA- GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CGTCATACGGACGCGCATGA--------- >LTR7up1_chr1_223024396223030156_4885_ZNF534_k4me3_TSS_KLF4_MED1_NANOG_OCT4_SOX2_TCF4_FOXA1_7up_wanghigh_GRO2of7__chr1_223029702223030156___1450 TGCCAGGCCTCTGAGCCCAAG-----------------------CCAAACCATTGCATCC CCTGTGAC---------------------------------------------TTGCATA TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAACTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTAG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACA- GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA---AA----TAAACAGCCATGTTGCTCACACACAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATG---------- >LTR7up1_chr14_4151587141521881_3430_ZNF534_KAP1_k4me3_EncodeTxn_FOXP1_KLF4_NANOG_OCT4_7up_GRO2of7__chr14_4151587141516320____1449 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAC-CATCCCAGCC CCTGTGAC---------------------------------------------TTGCACA TATATGACCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCATCGCTGATTCTCTTTTTGGACTCAGCCCGCCTGCACCC AGGTGA---AA----TAAACAGCCATGTTGCTCACGCAAAGCCTG--TTT--GGTGGTCT CCTCACACGGACGCGCATGA--------- >LTR7up1_chr12_79539848_79545625_4837_ZNF534_ZNF90_KAP1_k4me3_FOXP1_KLF4_NANOG_44108_7up_wanghigh_GRO1of7_7up_phylo____chr12_7953984879540298____1450 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAACCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACA TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CATCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTCACTGATTCTCTTTTTGGACTCAGCCTGCCTGCACCC AGGTGA---AA----TAAAGAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACCGACGCACATGA--------- >LTR7up1_chr6_115031793_115037619_3648_ZNF534_KAP1_EncodeRepressed_FOXP1_KLF4_NANOG_SOX2_7up_7up_phylo____chr6_115031793115032243____1450 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCGCATCT CCTGTGAC---------------------------------------------TTGCATA TATATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GAGATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CATCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AATG- GCCCCACTC-T-T-ATCTCCCTTCCCTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGATGCACATGA--------- >LTR7up1_chr12_66497777_66498226_h3k27ac_enh_SOLO_KLF4_NANOG_44108_7up_7up_phylo____chr12_6649777766498226____1449 --TCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCTACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GGG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCTCTTTGACTGTAATTTTCATTTACCTACCCA-AATCCTATAA-----------AACT- GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCCCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGACGCGCATGA--------- >LTR7up1_chr13_56112411_56118259_3430_ZNF534_KAP1_k4me3_EncodeTxn_KLF4_NANOG_44108_FOXA1_7up_wanghigh_C_7up_phylo___chr13_5611780956118259___1450 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TGTACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAATAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACAACAAAAGAAGTGTAAATGGCTGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAA----CACCTTGTG-------------- ---------------------------AC-CCCCATTCC-TGCCCGCCAGAGAACAA-AC CCTCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCGCCTGCAACC AGGTGA---AA----TAAACAGCCATGCTGCTCACACAAAGCCTG--TTT--GGTGCTCT CTTCACACAGATGCGCATG---------- >LTR7up1_chr12_10332976_10338643_3275_ZNF534_k4me3_EncodeTxn_FOXP1_KLF4_NANOG_SOX2_7up_C_7up_phylo___chr12_1033819310338643___1448 TGTCAGGCCTCTGAGCCTAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACA TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCTTGGCTCAAA-AATCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCCCTTTGACTGCAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTTCCTGACTC--TTTTCGGACTCAGCCCGCCTGCACCC AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCATACAGACGCGCATG---------- >LTR7up1_chr8_84290302_84290753_h3k27ac_enh_SOLO_KLF4_NANOG_44108_SOX2_TCF4_7up_C_7up_phylo___chr8_8429030284290753___1448 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATGGCATCC CCTGTGAC---------------------------------------------TTGCAGG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGGCGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTTGCTGACTC--TTTTCGGACTCAGCCCGCCTGCACCC AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGACGCGCATG---------- >LTR7up1_chr13_83833382_83833829_EncodeRepressed_SOLO_KLF4_NANOG_TCF4_7up_7up_phylo____chr13_8383338283833829____1447 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATTGCATCC CCTGTGAC---------------------------------------------TTGCACG TATAAGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAA---GTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACT--------TT--GTGAAAGTCCTTTCCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA---AA----TAAACAGCCATGGTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATGA--------- >LTR7up1_chr4_91654602_91660568_3326_ZNF534_EncodeTxn_KLF4_NANOG_FOXA1_7up_GRO3of7_C_7up_phylo___chr4_9166011891660568___1450 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATGC CCTGTGAC---------------------------------------------TTGCACA TATAAGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGTCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCA-------------- ---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATTTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGCGGTCT CTTCACACGGACGCGCAGG---------- >LTR7up1_chr11_7912151_7917907_3408_ZNF534_ZNF90_KAP1_k4me3_EncodeTxn_KLF4_NANOG_7up_GRO1of7_C_7up_phylo___chr11_79174687917907___1439 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATATGCACAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGGGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCC----------------- -----------TGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CAACTTTCG-------------- ---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACA- GCCCCACCC-T-T-ATCTCCCTTTGTTGACTCTCTTTTCGGACTCAG-CCGCCTGCACCC AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAACCCTG--TTT--GGTGGTCT CTTCACACAGACGCACATG---------- >LTR7up1_chr16_65229805_65235349_3369_ZNF534_k4me3_TSS_KLF4_NANOG_44108_SOX2_TCF4_FOXA1_7up_wanghigh_C_7up_phylo___chr16_6523490065235349___1449 TGTC-GGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CT----------TCAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTTCG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AG CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGACGCGCATG---------- >LTR7up1_chr3_112418412112423365_5101_ZNF534_ZNF90_KAP1_k4me3_enh_KLF4_MED1_NANOG_OCT4_SMAD11_TCF4_7up_wanghigh_GRO2of7__chr3_112422914112423365___1450 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTCCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAA-AC CCTCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGACGCGCATG---------- >LTR7up1_chr3_25858903_25859352_SOLO_KLF4_NANOG_44108_7up_C_7up_phylo___chr3_2585890325859352___1446 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATTGCATCC CCTGTGAC---------------------------------------------TTGCACG TATAAGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGTCGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ACT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTAG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCCCTT----TGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACAC AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGACGCACATG---------- >LTR7up1_chr1_221973078_221978957_3397_ZNF534_k4me3_weakenh_FOXP1_KLF4_MED1_NANOG_44108_SOX2_TCF4_7up_wanghigh_C_7up_phylo___chr1_221978509221978957___1447 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCATG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATACGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGTCGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--G---AAGTCCTTTTCCTAG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAA-AC CCCCTTTAACTATAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCGCTTCACTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGATGCACATG---------- >LTR7up1_chr14_89440363_89440800_h3k27ac_enh_SOLO_KLF4_NANOG_44108_SOX2_7up_7up_phylo____chr14_8944036389440800____1437 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATAGGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAGAAGAAGTGTAAATGGCCGGTTCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTT------------------- ---------CCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCGACTCC-TGCCCGCCAGAGAACAA-AC GCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTCGCTGAC--TCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA---AA----TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGATGC-CATGA--------- >LTR7up1_chr3_191666260_191672378_3422_ZNF534_KAP1_k27ac_EncodeTxn_FOXP1_KLF4_NANOG_44108_FOXA1_7up_GRO5of7_GRO6of7_GRO7of7_C_7up_phylo___chr3_191671928191672378___1450 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATTCGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-GGCCCACCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACACA-AATCCTATAA-----------AATG- ACCCCATCC-T-T-ATCTCCTTTCGCTGACTGTCTTTTCAGACTCAGCCCACCTACACCC AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGATGCACATG---------- >LTR7up1_chr9_93347588_93353344_4824_transcribed_ZNF534_k4me3_enh_FOXP1_KLF4_NANOG_44108_SMAD11_SOX2_TCF4_FOXA1_7up_wanghigh_GRO1of7_7up_phylo_____chr9_9334758893348038____1449 --TCAGGCCTCTGAGCCCAAG-----------------------TCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACACCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGATGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGGG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACA- GCCCCACCC-T-T-ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGAAGCGCATGA--------- >LTR7up1_chrY_5941111_5946036_4905_KAP1_NANOG_SOX2_FOXA1_7up_wanghigh_GRO1of7_7up_phylo____chrY_59411115941560____1449 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATTGCATCC CCTGTGAC---------------------------------------------TTGCACG CATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAGGA AGTGA-----ATATGCCCTGC-CCCACCTTAATTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAAGGAACAA--C CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTTGCTGACTCTCTTTTTGGACTCAGCCCACCTGCACCC AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATGA--------- >LTR7up1_chrX_92824428_92829345_4892_ZNF534_KAP1_EncodeRepressed_FOXP1_KLF4_NANOG_44108_7up_7up_phylo____chrX_9282442892824880____1450 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATTGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAGGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GATATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CT----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTTGCTGACTCTCTTTTTGGACTCAGCCCACCTGCACCC AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACACGCATGA--------- >LTR7up1_chr8_114281698_114287733_3369_transcribed_ZNF534_k4me3_TSS_KLF4_NANOG_44108_SMAD11_FOXA1_7up_wanghigh_GRO1of7_7up_phylo____chr8_114281698114282146____1448 -GTCGGGCCTCTGGGCCCAAG-----------------------CCAAGCCATTGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCATTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAGA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCT-TGCCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTTCCTTTGCTGACTCT--TTTCAGACTCAGCCCACCTGCACCC AGGTGA---AA----TAAACAGCCATGTAGCTCACACAACGCCTG--TTT--GGTGGTCT CTTCACACGGACGCACATGA--------- >LTR7up1_chr2_187670483_187676269_3302_ZNF534_KAP1_k4me3_weakenh_KLF4_NANOG_44108_SMAD11_TCF4_7up_C_7up_phylo___chr2_187675819187676269___1450 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATTGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACTCCCAGG------------------------------------------------ -----------------------------TGGCCTGAAGTAACTCAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTGACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCAGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------GC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCGCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA---AA----TAAACAGCCACGTTGCTCACACAAAGCATG--TTT--GGTGGTCT CTTCACACAGACGCGCAAG---------- >LTR7up1_chr10_6797083_6802953_3387_ZNF534_KAP1_k4me3_TSS_FOXP1_KLF4_NANOG_44108_TCF4_FOXA1_7up_C_7up_phylo___chr10_68025036802953___1450 TGTCATGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATAC CCTGTGAC---------------------------------------------TTGCACG TATATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAC----------------------- ---GACATTCTACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGACTCAAA-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCA-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AATG- GCCCCACCC-C-T-ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGATGCGCATG---------- >LTR7up1_chr2_7872706_7878891_3338_transcribed_ZNF534_k4me3_TSS_FOXP1_KLF4_MED1_NANOG_44108_SOX2_TCF4_7up_wanghigh_GRO1of7_C_7up_phylo____chr2_78784417878891___1448 TGTCAGGCTTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC TCTGTGAC---------------------------------------------TTGCACG TATATGCCCAGA------------------------------------------------ -----------------------------TGGCTTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCA-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AATG- GCCCCACCC-T-T-GTCTCCCTTCACTGACTCT--TTTCGGACTCAGCCCGCCTGCACCC AGGTGA---AA----TAAACAGCCATGTTACTCACACAAAGCCTG--TTT--GGTGGTCT CTTCATACGGACGCGCATG---------- >LTR7up1_chr2_206806840206812627_5033_ZNF534_k4me3_enh_FOXP1_KLF4_NANOG_OCT4_SOX2_TCF4_7up_wanghigh_GRO2of7__chr2_206812177206812627___1450 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCATG TATATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGG-CCCGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCAT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGACTCAAA-AATCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTCTCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATG---------- >LTR7up1_chr16_70616524_70622062_3336_ZNF534_k4me3_KLF4_NANOG_44108_SOX2_TCF4_FOXA1_7up_wanghigh_chimeric_C_7up_phylo___chr16_7062161170622062___1449 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC CCTGTGAC---------------------------------------------TTGCACG TATATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCCCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAAA-AA-CACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCTCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GATGGTCT CTTCACACGGACGCGCATG---------- >LTR7up1_chr7_83459668_83465383_4697_transcribed_ZNF534_k4me3_TSS_FOXP1_KLF4_MED1_NANOG_44108_SOX2_TCF4_FOXA1_7up_wanghigh_chimeric_GRO1of7_7up_phylo____chr7_8345966883460118____1450 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATTCGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCTGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCCTTTTGACTGGAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGTGCATGA--------- >LTR7up1_chr6_21361492_21367257_5036_ZNF534_k4me3_EncodeRepressed_KLF4_NANOG_44108_FOXA1_7up_wangmod_GRO4of7_C_7up_phylo___chr6_2136681721367257___1440 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCT CCTGTGAC---------------------------------------------TTGCACG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACCGAAGAATCACAAAAGA AGTGA-----ATATGGCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTT-------------------- --------TCCTGGCTCAAA-AAGCACCCGCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATG---------- >LTR7up1_chr8_115212253115217978_3275_ZNF534_ZNF90_KAP1_k4me3_EncodeTxn_FOXP1_KLF4_NANOG_OCT4_FOXA1_7up_GRO2of7__chr8_115212253115212703____1450 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTAAAAGTCCTTTCCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACC- GCCCCACCC-T-T-ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GATGGTCT ATTCACACAGACGTGCATGA--------- >LTR7up1_chr5_157945254_157945704_h3k27ac_weakenh_SOLO_KLF4_NANOG_7up_7up_phylo____chr5_157945254157945704____1450 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAATA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TA------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTCCCTGG-------------- ----CTCGTCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCCTTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGTGCATGA--------- >LTR7up1_chr3_176321619_176327363_3232_ZNF534_k4me3_TSS_FOXP1_KLF4_NANOG_44108_SMAD11_TCF4_7up_wanghigh_GRO1of7_C_7up_phylo___chr3_176326913176327363___1450 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCT CCTGTGAC---------------------------------------------TTGCAGG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAATACCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATAGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCTCGCCAGAGAACAA-AC CCCTTCTGACTGTAATTTTCCTTTACCTACCGA-AATCCTATGA-----------AACG- GCCCTACCC-T-T-ATCTCCCTTCACTGACTCTCTTTTCAGACTCAGCCTGCCTGCACCC AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGTGCATG---------- >LTR7up1_chr13_8635816886364136_3426_ZNF534_k4me3_weakenh_KLF4_NANOG_OCT4_SMAD11_SOX2_7up_GRO2of7__chr13_8635816886358617____1449 -GTCAGGCCTCTGAACCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATACGCCCTTT-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCTGGTCCT------------------- ------------TG------------------CC----------TTAA----ATGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-A-ACACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCTACTCC-TGCCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTATCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTCACTGATTCTCTTTTGGGACTCAGCCCGCCTGCACCC AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGTGCATGA--------- >LTR7up1_chr5_120697546120703411_3389_ZNF534_k4me3_TSS_FOXP1_KLF4_MED1_NANOG_OCT4_SMAD11_SOX2_TCF4_FOXA1_7up_wanghigh_GRO2of7__chr5_120702961120703411___1450 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGGAGAATCACAAAAGA AGTGA-----ATACACTTTGC-CCCACCTTAACTGAT----------------------- ---AACATTCCACCACAAAAGAAGTGTAAATGGCTAGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAATCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AGGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCGACCCA-AATCCTATAA-----------AATG- GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGTGCATG---------- >LTR7up1_chr14_4710419747108765_3439_ZNF534_k4me3_TSSflanking_FOXP1_KLF4_NANOG_OCT4_7up_wanghigh_chimeric_GRO2of7__chr14_4710419747104677____1448 ---CAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAACA AGTGA-----ATATGCCTTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGTGCATGA--------- >LTR7up1_chr20_40269054_40274761_3256_transcribed_ZNF534_k4me3_TSS_KLF4_NANOG_44108_7up_wanghigh_GRO1of7_7up_phylo____chr20_4026905440269503____1449 -GTCAGTCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTCCAGG TATATGACCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTAAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AA-CACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AATG- TCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGATGA---AA----TAAACAGCCACGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGTGCATGA--------- >LTR7up1_chrX_95092677_95093127_EncodeRepressed_SOLO_KLF4_NANOG_44108_7up_7up_phylo____chrX_9509267795093127____1450 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TCGCACG TATATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCGCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCTTTTACCTACCCA-AATCCTATAA-----------AATG- GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC AGGTGA---AA----TAAACAGCCTTGTTGCTCACACAAAACCTG--TTT--GGTGGTCT CTTCACACGGACGTGCATGA--------- >LTR7up1_chr4_78713842_78719721_3415_ZNF534_ZNF90_KAP1_k27ac_EncodeRepressed_KLF4_NANOG_FOXA1_7up_GRO5of7_GRO6of7_GRO7of7_C_7up_phylo___chr4_7871927278719721___1449 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC CCTGTGAC---------------------------------------------TTGCACA TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCATGAAAGAAGTGCAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAA-GTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAGA-AAGCACCCTCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTCACTGACTCTCTTTTCAGACTCAGCCCACCTGCACCC AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGATGTGCATG---------- >LTR7up1_chr9_118485633_118491397_3435_ZNF534_EncodeTxn_KLF4_NANOG_TCF4_7up_wanghigh_GRO4of7_C_7up_phylo___chr9_118490948118491397___1449 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTAAC---------------------------------------------TTGCACA TATAAGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAAGTGAAGAATCACAAAAGA AGTTA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCATAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTAG-------------- ----CTCATCCTGGCTCAAA-AA-CACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCA-------------- ---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTCTCTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC AGGTAA---AA----TAAACAGCCATGTTACTCACACAAAGCCTA--TTT--GGTGGTCT CTTCACACAGACGTGCATG---------- >LTR7up1_chr5_126839337_126845705_3467_ZNF534_k4me3_TSS_FOXP1_KLF4_NANOG_44108_SOX2_TCF4_7up_wanghigh_GRO1of7_C_7up_phylo___chr5_126845255126845705___1450 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATAAGCCCAGA------------------------------------------------ -----------------------------TGGCCTTAACTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCAAAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAGA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA---AA----TAAACAGCCGTGTTGCTCACACAAATCCTG--TTT--GGTGGTCT CTTCACACAGACGTGCATG---------- >LTR7up1_chr2_66243889_66249502_4689_transcribed_ZNF534_k4me3_EncodeTxn_KLF4_NANOG_44108_7up_GRO1of7_7up_phylo____chr2_6624388966244336____1447 -GTCAGGCCTCTGAGCCCAAG-----------------------CGAAGCCATCGCATGC CCTGTGAC---------------------------------------------TTGCACG TATATGCCCACA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGT-------ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGTTCAGA--AGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTCCCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA---AA----TAAACAGCCATCTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGTGCATGA--------- >LTR7up1_chr4_145832612145838502_3642_ZNF534_ZNF90_KAP1_EncodeRepressed_FOXP1_KLF4_NANOG_TCF4_7up_GRO2of7__chr4_145832612145833009____1397 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATATGCCTAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTG------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------TGCG-------------- ---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA---AA----TAAACAACCATGTTGCTCACACAAGGCCTG--TTT--GGTGGTCT CTTCACACGGACGTGCATGA--------- >LTR7up1_chr11_9658763596593674_3349_ZNF534_KAP1_k4me3_EncodeTxn_KLF4_NANOG_OCT4_SMAD11_7up_GRO2of7__chr11_9658763596588085____1450 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CTTGTGAC---------------------------------------------TTGCACG TATATGCTCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCGCCACAAAAGAAGTGTAAACGGCCAGTCCT------------------- ------------TA------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCCCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AATG- GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTGCGGACTCAGCCCGCCTGCACCC AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGACGCGCATGA--------- >LTR7up1_chr2_215922303_215928126_4935_ZNF534_k4me3_EncodeTxn_KLF4_NANOG_44108_7up_wanghigh_GRO1of7_7up_phylo____chr2_215922303215922755____1450 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CTCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAA-AC CCACTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCA-T-T-ATCTCCCTTCACTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGACGTGCACGA--------- >LTR7up1_chr5_5515523_5521164_4804_ZNF534_ZNF90_KAP1_EncodeTxn_KLF4_NANOG_SOX2_TCF4_7up_wangmod_7up_phylo____chr5_55155235515972____1449 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATTGCATCC CCTGTGAC---------------------------------------------TTGCATG TATATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ACATGCCCTGC-CCCACCTTAATTGAT----------------------- ---GACATTCCACCATAAAAGAAGTGTAAATGGCCAGTCCT------------------- ------------TG------------------CC----------TTAA----ATGATGAT ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTC-TTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACA- GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAACCCTG--TTT--GGTGGTCT CTTCACACAGACGTGCATGA--------- >LTR7up1_chr5_104063635_104070481_1980_ZNF534_k4me3_KLF4_NANOG_44108_7up_GRO3of7_C_7up_phylo___chr5_104070031104070481___1450 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCATG TATATGCCCAGA------------------------------------------------ -----------------------------TGGCCTAAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACGTTCCACCACAAAAGAAGTGTAAATGGCCAGTCAT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTGCCTTCGCTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACAGGGACGCGCATG---------- >LTR7up1_chr4_83850020_83850501_h3k27ac_enh_SOLO_KLF4_NANOG_44108_7up_C_7up_phylo___chr4_8385002083850501___1450 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATAGGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCAGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAA-AT CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATG---------- >LTR7up1_chr13_69197067_69197517_EncodeRepressed_SOLO_FOXP1_KLF4_NANOG_7up_C_7up_phylo___chr13_6919706769197517___1450 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC CCTGTGAC---------------------------------------------TTGCATG TATATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTGACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCAGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCTCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-CC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATG---------- >LTR7up1_chr15_87831107_87837022_3360_ZNF534_EncodeTxn_KLF4_NANOG_7up_GRO3of7_7up_phylo____chr15_8783110787831555____1448 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAGGA AGTGA-----ATATGCCCTGC-CCTACCTTAACTGAT----------------------- ---GACGTTCCACCACAAAAGAAGTGTAAATGGCCAGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACTCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCAGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCT--TTTCGGACTCAGCCCGCCTGCACCC ATGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGACGCGCATGA--------- >LTR7up1_chr13_3631632536322191_3430_ZNF534_ZNF90_KAP1_k4me3_EncodeTxn_KLF4_NANOG_OCT4_TCF4_7up_wanghigh_chimeric_GRO2of7__chr13_3631632536316770____1445 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACA TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAA--- AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCTACCACAAAAGAAGTGTAAATGGCCACTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TACCTGACAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTTGCTGACTCT--TTTCAGACTCAGCCTGCCTGCACCC AGGTGA---AA----TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGACGCGCATGA--------- >LTR7up1_chr4_9227149292277648_3293_ZNF534_k4me3_TSS_FOXP1_KLF4_NANOG_OCT4_SMAD11_SOX2_TCF4_7up_wanghigh_chimeric_GRO2of7__chr4_9227719892277648___1450 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC CCTATGAC---------------------------------------------TTGCATG TATACACCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGTCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCTGATCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------GT--GCGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCA-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAAAAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACA- GCCCCACCC-T-T-ATCTCTCTTTGCTGACTCTCTTTTCAGACTCAGCCAGCCTGCACCC AGGTGA---AA----TAAACAGCCATGTTGCTCACGCAAAGCCTG--TTT--GGTGGTCT CTTCAAACAGACGTGCATG---------- >LTR7up1_chr6_121620422_121626300_3642_ZNF534_ZNF90_KAP1_EncodeTxn_FOXP1_KLF4_MED1_NANOG_44108_TCF4_FOXA1_7up_GRO1of7_C_7up_phylo___chr6_121625853121626300___1443 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC CCTGTGAC---------------------------------------------TTGCACG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGAAACTGAAGAATCACAAAAGA AGTGA-----GTATGCCCTGG-CCCACCTTAATTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCAGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCTACTCC-TGCCCGCGAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCCACCCA-AATCCTATAA-----------AACA- GCCCCACCC-T-T-ATCTCCCTTTGCTGACTCTCTTTTCA-------CCTGCCTGCACCC AGGTGA---AA----TAAATAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGACGTGCATG---------- >LTR7up1_chr6_125701848_125707763_3559_ZNF534_k4me3_enh_KLF4_NANOG_44108_SMAD11_SOX2_FOXA1_7up_wanghigh_C_7up_phylo___chr6_125707314125707763___1447 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC CCTGTGAC---------------------------------------------TTGCACG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGTCCTGC-CTCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAAC----C CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTAT CTTCACACGGACGCGCATG---------- >LTR7up1_chr2_12626335_12632257_3557_ZNF534_KAP1_k27ac_EncodeTxn_FOXP1_KLF4_NANOG_44108_7up_7up_phylo____chr2_1262633512626785____1450 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC CCTGTGAC---------------------------------------------TTGCACC TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGGGTAAATGGCCAGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTAG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCC-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CTCCTTTGACTGTAATTTTCCTTTACCTCCCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCACCTGCACTC AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGATGCTCATGA--------- >LTR7up1_chr16_60078535_60084578_3454_ZNF534_k4me3_EncodeTxn_FOXP1_KLF4_NANOG_7up_7up_phylo____chr16_6007853560078985____1450 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTATGAC---------------------------------------------TTGCACC TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCAGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTAG-------------- ----CTCATCCTGGCTCAAA-AAACACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCACTGACTCTCTTTTCAGACTCAGCCCTCCTGCACCC AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATGA--------- >LTR7up1_chr8_71674937_71680660_3428_transcribed_ZNF534_ZNF90_k4me3_TSS_KLF4_MED1_NANOG_44108_SMAD11_SOX2_TCF4_7up_wanghigh_GRO1of7_7up_phylo_____chr8_7167493771675387____1450 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACTACAAAAGAAGTGTAAATGGCTGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTAG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACA- GCTCCACCC-C-T-ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCCCCTGCACCC AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGATCT CTTCACATGGATGCACATGA--------- >LTR7up1_chr10_53492723_53504727_3435_ZNF534_KAP1_k27ac_weakenh_FOXP1_KLF4_MED1_NANOG_44108_SMAD11_SOX2_7up_GRO4of7_C_7up_phylo___chr10_5350427853504727___1449 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCAGG TATACG-CCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCAGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTAG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGTCCGCCTGCACCC AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATG---------- >LTR7up1_chr4_24500975_24506750_3448_ZNF534_k4me3_weakenh_FOXP1_KLF4_NANOG_44108_SOX2_TCF4_FOXA1_7up_GRO1of7_7up_phylo____chr4_2450097524501425____1450 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCATG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAATGACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTGACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTAG-------------- ----CTCATCCTGGCTCAAA-AATTACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACTTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCCCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGTGCATGA--------- >LTR7up1_chr10_52033757_52039561_4881_ZNF534_ZNF90_KAP1_k4me3_TSS_FOXP1_KLF4_MED1_NANOG_44108_SMAD11_TCF4_7up_wanghigh_chimeric_C_7up_phylo___chr10_5203911352039561___1448 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAT---------------------------------------------TTGCACA TGTACGCCCAGA------------------------------------------------ -----------------------------TGACCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCAGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTGC-TGCCTGCCAGAGAACAA-CC CCCCTTTGAC--TAATTTTCCTTTACCTACCCA-GATCCTATAA-----------AATG- GCCCCACCC-C-T-ATCTCCCTTCACCGACTCTCTTTTCGGACTCAGTCCGCCTGCACCC GGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGTGCATG---------- >LTR7up1_chrX_122222004_122227785_5005_transcribed_ZNF534_k4me3_TSSflanking_FOXP1_KLF4_NANOG_44108_TCF4_FOXA1_7up_wanghigh_GRO1of7_7up_phylo____chrX_122222004122222454____1450 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGGCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCTTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAGAAGAAGTGTAAACGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGCCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-CC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C-T-ATCTTCCTTCACTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGCACATGA--------- >LTR7up1_chrX_125388838_125394560_3232_ZNF534_ZNF90_KAP1_k4me3_TSSflanking_FOXP1_KLF4_MED1_NANOG_44108_SMAD11_7up_wanghigh_C_7up_phylo___chrX_125394110125394560___1450 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACA TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCTTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATAAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C-T-ATCTTCCTTCACTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATG---------- >LTR7up1_chr8_128611901_128617630_3345_ZNF534_k4me3_TSS_FOXP1_KLF4_NANOG_44108_FOXA1_7up_C_7up_phylo___chr8_128617180128617630___1450 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCCCATCC CCTGTGAC---------------------------------------------TTGCACG TAAACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAATAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---TACATTCCATCAGAAAGGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------AAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C-T-ATTTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA---AA----TAAACAACCATGTTGCTCATACAGAGCCTG--TTT--GGTGGTCT CTTCACATGGACGCGTATG---------- >LTR7up1_chr2_5000769_5006730_3382_ZNF534_EncodeRepressed_KLF4_NANOG_TCF4_7up_7up_phylo____chr2_50007695001216____1447 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCTGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCAGCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAAC----C CCCCTTTGATTGTAATTCTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCACTGACTCTCTTTTCAGACCCAGTCTGCCTGCACCC AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGCGCATGA--------- >LTR7up1_chr12_72816112_72816590_EncodeTxn_SOLO_FOXP1_KLF4_NANOG_44108_7up_C_7up_phylo___chr12_7281611272816590___1447 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC CCTGTGAC---------------------------------------------TTGCACG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCTTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAA---GTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCAACC-T-T-ATCTCCCTTCACTGACTCTCTTTTTGGACTCAGCCCACCTGCACCC AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACATGCATG---------- >LTR7up1_chr2_63847467_63847912_h3k27ac_TSS_SOLO_KLF4_MED1_NANOG_TCF4_7up_C_7up_phylo___chr2_6384746763847912___1445 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATTGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTAAAGCAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AC-CACCCCAAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AATG- GCCCCACCC-T-T-ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA---AA----TA----GCCATGTTGCTCACACAAAGCCTA--TTT--GGTGGTCT CTTCACACGGACGAGCATG---------- >LTR7up1_chr7_9353405_9359207_4739_ZNF534_ZNF90_KAP1_EncodeTxn_KLF4_NANOG_7up_GRO4of7_C_7up_phylo___chr7_93587579359207___1450 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTTCACG TATACACTCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACCAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTAG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCTCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AATG- GCCCCACCC-T-T-ATTTCCCTTCGCTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC AGGTGA---AA----TAAACAGCCATGTTACTCACACAAAGTCTG--TTT--GGTGGTCT CTTCACACGGACACGCATG---------- >LTR7up1_chr6_97779488_97785325_4861_ZNF534_KAP1_k27ac_enh_KLF4_MED1_NANOG_44108_SOX2_TCF4_FOXA1_7up_GRO1of7_7up_phylo____chr6_9777948897779947____1450 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCGGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---AACATTCCACCACAAAAGAAGTGTAAATGGCCAGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AATG- GCCCCACCC-T-T-ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCGCCTACACCC AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACACGCATGA--------- >LTR7up1_chr5_136565340_136571245_3256_ZNF534_ZNF90_KAP1_k27ac_EncodeTxn_FOXP1_KLF4_NANOG_44108_TCF4_7up_C_7up_phylo___chr5_136570797136571245___1447 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATAC CCTGTGAC---------------------------------------------TTGCACG TATACACCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGC-CTGC-CCCATCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGACAGTCCT------------------- ------------TG------------------AC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCTCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AATG- GCCCCACTC-T-T-ATCTCGCTTTGCTGACT--CTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA---AA----TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCACATG---------- >LTR7up1_chr1_81245283_81251207_3293_ZNF534_ZNF90_KAP1_k4me3_TSSflanking_FOXP1_KLF4_MED1_NANOG_44108_SMAD11_SOX2_TCF4_7up_wanghigh_GRO1of7_7up_phylo____chr1_8124528381245733____1450 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCAGG TATACACCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAAGGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGCTGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACTTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC GTCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AGTG- GCCCCACCC-T-T-ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA---AA----TAAATAGCCATGTTGTTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGGCGTGCATGA--------- >LTR7up1_chr4_91623640_91629699_3347_transcribed_ZNF534_k4me3_TSSflanking_KLF4_NANOG_44108_SMAD11_SOX2_TCF4_7up_wanghigh_GRO1of7_7up_phylo____chr4_9162364091624089____1449 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATTGCATCC CCTGTGAC---------------------------------------------CTGCATG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTATCTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAATGTAAATGGC-GGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAATAA-AT CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTAA---AA----TAAACAGCTATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACACCCATGA--------- >LTR7up2_chr6_9383015693835749_3487_ZNF534_k4me3_TSS_FOXP1_KLF4_NANOG_OCT4_SMAD11_SOX2_TCF4_FOXA1_7up_wanghigh_GRO2of7__chr6_9383529993835749___1450 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTTC-CCCACCTTAACTGAT----------------------- ---AACATTCCACCACAAAAGAAGTGTAAATGATCGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AATG- GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA---AA----TAAACAGCTTTCTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCATATGGACGCGCATG---------- >LTR7up1_chrX_94704639_94705089_TSSflanking_SOLO_FOXP1_KLF4_MED1_NANOG_44108_TCF4_7up_C_7up_phylo___chrX_9470463994705089___1450 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC CCTGTGTC---------------------------------------------TTGCACC TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCGACTCC-TGCCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCGTTACCTACCCA-AATCCTATAA-----------AACA- GCCCCACCC-T-T-ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA---AA----TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATG---------- >LTR7up1_chrX_94698820_94704626_4948_ZNF534_k4me3_FOXP1_KLF4_MED1_NANOG_44108_7up_wanghigh_GRO1of7_C_7up_phylo___chrX_9470417994704626___1447 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATGC CCTGTGAC---------------------------------------------TTGCACA TGTATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATGTGCCCTGC-CCCGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAAAGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACA- GCCCCACCC-T-T-ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA---AA----TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACATGCA------------ >LTR7up1_chr13_5604025156046275_4525_ZNF534_KAP1_EncodeRepressed_FOXP1_KLF4_NANOG_OCT4_FOXA1_7up_wanghigh_GRO2of7__chr13_5604025156040701____1450 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC ACTGTGAC---------------------------------------------TTGCACA TATACACCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ACATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTGAATGGCGGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTAG-------------- ----CTCATCCTGCCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAA-AC CCTCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA---AA----TAAACAGCCACATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGACGCGCATGA--------- >LTR7up1_chr4_92438954_92444654_3367_transcribed_ZNF534_k4me3_TSS_FOXP1_KLF4_MED1_NANOG_44108_SOX2_FOXA1_7up_wanghigh_chimeric_GRO1of7_C_7up_phylo___chr4_9244420492444654___1450 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATTGCAACC CCTGTGAC---------------------------------------------TTGCACC TATACTCCCAGA------------------------------------------------ -----------------------------TGGCCTAAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCAGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCGCCAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCGTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTCACTGACTCTCTTTACGGACTCAGCCTGCCTGCACCC AGGTGA---AA----TAAGCAGATGTGTCGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGACGCGCATG---------- >LTR7up2_chr8_132080238_132086002_3299_ZNF534_KAP1_k4me3_EncodeTxn_KLF4_NANOG_44108_SOX2_TCF4_7up_wanghigh_C_7up_phylo___chr8_132085552132086002___1450 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCAACC CCTGTGAC---------------------------------------------TTGCACC TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTCTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGAG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA---AA----TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATG---------- >LTR7up2_chr4_55280350_55280798_h3k27ac_enh_SOLO_KLF4_NANOG_SOX2_7up_C_7up_phylo___chr4_5528035055280798___1448 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACA TATATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGACGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TGAA----CCGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCATCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTCACTGACTCTCTTTTAGGACTCAGCCCGCCTGCACCC AGGTGA---------TTAGAAGCTTTACTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACTCGCATG---------- >LTR7up2_chr12_20762909_20769058_3164_ZNF534_KAP1_EncodeTxn_KLF4_NANOG_7up_GRO1of7_7up_phylo____chr12_2076290920763358____1447 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCGTCC CCTGTGAC---------------------------------------------TTGCATG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGTAGAATCACAAAAGA AGTTA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCTGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCATGG-------------- ----CTCATCCTGGCTCAAA-AA-CACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CACCTTTGACTATAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AATG- GCCCCACCC-T-T-ATCTCCCTTCACTGACTCTCTTTTCAGACTCAGCCCACCTGCACCC AGGTGA---------TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACACACATGA--------- >LTR7up2_chr10_53358813_53359266_h3k27ac_enh_SOLO_KLF4_NANOG_44108_SOX2_7up_C_7up_phylo___chr10_5335881353359266___1448 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCTCATCC CCTGTGAC---------------------------------------------TTGCATG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACTTTAACTGAT----------------------- ---GACATTCTACCACAAAAGAAGTGTAAATGGCCAGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCTTTTTCCTCG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AATG- GCCCCACCC-T-T-ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA---------TTAAAAGCTTTATTGCTCACTCAAAGCCTG--TTT--GGTGGTCT CTTCACAGGGACACGCATG---------- >LTR7up2_chr17_53455673_53456123_h3k27ac_enh_SOLO_KLF4_NANOG_7up_C_7up_phylo___chr17_5345567353456123___1450 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC CCTGTGAC---------------------------------------------TTGCACG TATATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AATCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCA-------------- ---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAA-AT CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATACTATAA-----------AATG- GCCCCACCC-T-T-ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA---AA----TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATG---------- >LTR7up2_chr12_8693868286944755_3450_ZNF534_k4me3_EncodeTxn_FOXP1_KLF4_NANOG_OCT4_7up_GRO2of7__chr12_8693868286939132____1450 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATAAGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACGAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCTGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTAG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GTG----CACCTTGCA-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACA- GCTCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA---AA----TAAATAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGAAGTGCATGA--------- >LTR7up2_chr2_76573625_76579704_3338_ZNF534_k4me3_KLF4_NANOG_44108_FOXA1_7up_C_7up_phylo___chr2_7657925476579704___1450 TGTCAAGCCTCTGAGCCCAAG-----------------------CCAAGCAATCGCATCC CCTGTGAC---------------------------------------------TTGCACA TATAAGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAAGTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCAGTCCT------------------- ------------TG------------------CC----------TTAC----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTAG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAA-AC CCGCTTTGACTGCAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCTCCC AAGTGA---AA----TAAACAGCTTTACTGCTCACACAAAGCCTG--TTT--GGTGGTCT TTTCACAGGGACGCGCATG---------- >LTR7up2_chrX_87681680_87687644_3515_transcribed_ZNF534_KAP1_k4me3_EncodeTxn_KLF4_MED1_NANOG_44108_7up_wanghigh_GRO1of7_7up_phylo____chrX_8768168087682129____1449 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATTGCATCC CCTGTGAC----------------------------------------------TGCACA TATATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTAAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTAAAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA---AA----TAAAGAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGATGCGCATGA--------- >LTR7up2_chr15_88547268_88562263_2789_ZNF534_ZNF90_KAP1_EncodeRepressed_KLF4_NANOG_FOXA1_7up_GRO4of7_C_7up_phylo___chr15_8856181288562263___1450 TGTCAGGCCTCTGAGGCCAAG-----------------------CCAAGCCATTGCATCC CCTGTGAC---------------------------------------------CTGCACG TATAAGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCAACACAAAAGAAGTGTAAATGGCCAGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTAAAAGTCCTTTTCCTAG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AATG- GCCCCACCC-T-T-ATCTCCCTTCACTGACTCTCTTTTCAGACTCAGCCCACCTGCACCC AGGTGA---AA----TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATG---------- >LTR7up2_chr11_130753498_130759137_3424_ZNF534_k4me3_EncodeRepressed_KLF4_NANOG_44108_7up_GRO4of7_C_7up_phylo___chr11_130758688130759137___1449 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATGC CCTGTGAC---------------------------------------------TTACATG TATATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAACAA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCAGTCCT------------------- ------------TG------------------CC----------TTAA----GTGAGGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTAG-------------- ----CTCACCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGAG-------------- ---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA---AA----TAAACAGCTTTACTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATG---------- >LTR7up2_chr9_87410694_87416706_3585_transcribed_ZNF534_k4me3_TSS_FOXP1_KLF4_NANOG_44108_SOX2_TCF4_FOXA1_7up_wanghigh_GRO1of7_7up_phylo____chr9_8741069487411146____1450 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC CCTGTGAC---------------------------------------------TTGCACG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCTGCCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTAG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCACAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCA-------------- ---------------------------AC-CCCAACTCC-TGCCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACA- GCCCCACCC-C-T-ATCTGCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA---AA----TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACCGACGCGCATGA--------- >LTR7up2_chr8_114241604_114247083_2577_ZNF534_k4me3_EncodeRepressed_KLF4_NANOG_FOXA1_7up_GRO3of7_7up_phylo____chr8_114241604114242054____1450 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGACCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCATTCCT------------------- ------------TG------------------CC----------TCAA----GAGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GGGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCCCTTTGACTGTAACTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA---AA----TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGTGCATGA--------- >LTR7up2_chr12_1470542114710640_3559_ZNF534_k4me3_TSS_FOXP1_KLF4_NANOG_OCT4_SOX2_7up_wanghigh_GRO2of7__chr12_1471015914710640___1450 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCATG TATACCCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCTTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCTACCTGCACCC AGGTGA---AA----TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATG---------- >LTR7up2_chr13_42868004_42873158_3482_ZNF534_k4me3_enh_FOXP1_KLF4_NANOG_44108_7up_wanghigh_GRO3of7_C_7up_phylo___chr13_4287270642873158___1442 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCCGTGAC---------------------------------------------TTGCACG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCTTGC-CCCACCGTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCTGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCC---------CCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACGC-T-T-ATTTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA---AA----TAAACAGCTTTACTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATG---------- >LTR7up2_chr9_115473181_115478918_3472_transcribed_ZNF534_k4me3_TSSflanking_FOXP1_KLF4_NANOG_44108_SMAD11_SOX2_7up_wanghigh_GRO1of7_7up_phylo____chr9_115473181115473632____1450 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG CATACACTCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCTACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CATCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACT- GCCCCACCC-T-T-ATCTCCCTTCACTGACTCTCATTTCGGACTCATCCCACCTGCACCC TGGTGA---AA----TAAACAGCTTCATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGTGCATGA--------- >LTR7up2_chr6_131901550_131907417_3448_transcribed_ZNF534_k4me3_weakenh_KLF4_MED1_NANOG_44108_SOX2_TCF4_7up_wanghigh_GRO1of7_7up_phylo____chr6_131901550131902003____1450 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATTGCATCC GCTGTGAC---------------------------------------------TTGCACG TATACACCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAAGTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TGAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CAACTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACTTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA---AA----TAAACAGCTTTACTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATGA--------- >LTR7up2_chr16_86742019_86747655_3249_ZNF534_k4me3_EncodeTxn_FOXP1_KLF4_NANOG_SOX2_FOXA1_7up_wanghigh_C_7up_phylo___chr16_8674720586747655___1450 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACA TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATAGGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTATAAATGGTCGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTCTCTGACTCTCTTTTCAGACTCAGCCCACCTGCTCCC AGGTGA---AA----TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATG---------- >LTR7up2_chr1_5044796_5053098_5402_ZNF534_k27ac_EncodeTxn_FOXP1_KLF4_NANOG_7up_GRO3of7_7up_phylo____chr1_50447965045235____1439 -GCCAGGCCTCTGAGCCCAAG-----------------------ACAAGCCATCGCATCC CCTGTGAC---------------------------------------------CTGCACC TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATAAGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AATCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCTACTCC-TGCCCGCCAGACAGCAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTC----GCTCTCTTTTCAGACTCAGCCCACCTGCATCC AGGTGA---------TTAAAAGCTTTATTGCTCA----AAGCCTG--TTT--GGTG-TCT CTTCACACGGACGTGCATGA--------- >LTR7up2_chr4_168018594_168019042_EncodeRepressed_SOLO_NANOG_7up_C_7up_phylo___chr4_168018594168019042___1448 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------CTGCATG TATATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GATATTCCACCATAAAAGACGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCTACTCC-TGCCCGCCATAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-AACTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCACCTGCTCCC AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATG---------- >LTR7up2_chr2_183529906_183530354_TSSflanking_SOLO_KLF4_NANOG_7up_7up_phylo____chr2_183529906183530354____1448 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------CTGCACA TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCCTTTCCTGG-------------- ----CTCATCCGGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGCGCATGA--------- >LTR7up2_chr17_40011683_40012131_EncodeTxn_SOLO_KLF4_NANOG_7up_C_7up_phylo___chr17_4001168340012131___1447 TGTCAAGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTAAC---------------------------------------------TTGCACA TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCAACTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAGGTGTAAATGGCGGGTCCT------------------- ------------TG------------------CC----------TTAA----TTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA----------TAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGATGCCCATG---------- >LTR7up2_chr8_67719967_67720415_h3k27ac_enh_SOLO_FOXP1_KLF4_NANOG_44108_SMAD11_7up_C_7up_phylo___chr8_6771996767720415___1448 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACA TATCCGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTGTAA-----------AACC- GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCCCCC AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATG---------- >LTR7up2_chr4_145698823_145703503_3326_ZNF534_KAP1_k4me3_EncodeTxn_KLF4_NANOG_44108_7up_wanghigh_GRO1of7_7up_phylo____chr4_145698823145699272____1448 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACA TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCAGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATTCTGGCTCAAA-TAGCACCCCCAT--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCA-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCCACCCA-AATCATATAA-----------AATG- GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCAGACTCAGCCCACCTGCACCC AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGATGCGCAAGA--------- >LTR7up2_chrY_18645041_18645491_SOLO_NANOG_7up_7up_phylo____chrY_1864504118645491____1446 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCAT-GCATCC CCTGTGAC---------------------------------------------CTGCACG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGTTCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCTGGTCCT------------------- ------------TG------------------CC----------GTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATTCTGGCTCAAA-AAGCACGCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCTACTCC-TGCCCGCCAGAGAACAA-AC C-CCTTTGACTGTAATTTTCCTTTACCTACACA-AATCGTATAA-----------AACG- GTCCCACCC-T-T-ATCTCCCTTGGCTGACTCTCTTTTTGGACTCAGCCCACCTGCACCC AGGCGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGATGCACATGA--------- >LTR7up2_chr9_8545832085466944_3779_ZNF534_ZNF90_KAP1_k4me3_KLF4_NANOG_OCT4_7up_GRO2of7__chr9_8545832085458773____1447 -GTCAGGCCTCTAAGCACAAG-----------------------CCAAGCCAA-GCATCC CCTGTGAC---------------------------------------------TTGCATG TATATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGACCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAAAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CAACTTGCA-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CGCCTTTGACTGTAATTTTCTTTTACCTACCCA-AATCCTATCC-----------AACG- GCCCCACCC-T-T-ATCTCCCTTTGCTGGCTCTCTTTTTGGACTCAGCCCACCTGCACCC AGGTGA---------TTAAAAGCTTTATTGCTCACACAAGGCCTA--TTT--GGAGGTCT CTTCACACAGATGCACATGA--------- >LTR7up2_chr4_23722873_23727866_3435_ZNF534_EncodeTxn_KLF4_NANOG_7up_wangmod_chimeric_GRO4of7_C_7up_phylo___chr4_2372742023727866___1446 --TCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCATAAAAGAAGTGTAAGTGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTACCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-CC C-TCTTTGACTGTAATTTTCCTTTACCTTCCCA-AATCCTATAA-----------AATG- GCCCCAACC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACAGGGACGCGCATG---------- >LTR7up2_chr13_5557822855584087_3391_ZNF534_k4me3_TSS_FOXP1_KLF4_NANOG_OCT4_SMAD11_SOX2_TCF4_7up_wanghigh_GRO2of7__chr13_5558363855584087___1447 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAT ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCTGCCAGAAAACAA-CC C-CCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AATG- GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGTGCATG---------- >LTR7up2_chr14_41599669_41600169_h3k27ac_enh_SOLO_NANOG_44108_TCF4_C_7up_phylo___chr14_4159966941600169___1446 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG GATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTAAAGTAACTGAAGAATCACAAAA-A AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAA-AC C-CCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACAGGGACGTGCATG---------- >LTR7up2_chr14_38190638_38196525_3465_transcribed_ZNF534_k4me3_TSS_KLF4_MED1_NANOG_44108_SOX2_FOXA1_7up_wanghigh_GRO1of7_7up_phylo____chr14_3819063838191083____1445 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CCCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAA-AC C-CCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTCACTGACACT--TTTCGGACTCAGCCTGCCTGCACCC AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGATGCGCATGA--------- >LTR7up2_chr2_64252414_64257646_3723_transcribed_ZNF534_k4me3_TSS_FOXP1_KLF4_MED1_NANOG_44108_SOX2_7up_wanghigh_GRO1of7_7up_phylo____chr2_6425241464252895____1447 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCCCG TATATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCTTGC-CCCACCTTGACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CATCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAA-AC C-CCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCTCCACCC-T-T-ATCTCCTTTTGCTGACTCTCTTTTCTGACTCAGCCCGCCTGCACCC AGGAGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGATATGCATGA--------- >LTR7up2_chr19_20087687_20096781_5611_ZNF534_KAP1_EncodeTxn_KLF4_NANOG_7up_GRO1of7_C_7up_phylo___chr19_2009633620096781___1445 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------CTGCACG TATATGCCCAGA------------------------------------------------ -----------------------------TGGTCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCAC---AGAAGTGTAAATGGCCAGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AATG- GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGAATCAGCCCACCTGCACTC AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACATGCATG---------- >LTR7up2_chr5_7263580_7269331_5029_transcribed_KAP1_k4me3_EncodeTxn_KLF4_MED1_NANOG_44108_SMAD11_FOXA1_7up_wanghigh_GRO1of7_7up_phylo____chr5_72635807264028____1448 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCATG TATACTCCCAGA------------------------------------------------ -----------------------------TGGCCGGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ACATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCAGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AATCATCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTTCTTTACCTACCCA-AATCCTATAA-----------AATG- GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTTGGACTCAGCCCACCTGCACCC AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGATATGTGTGA--------- >LTR7up2_chr4_189479539_189485403_3269_ZNF534_EncodeTxn_KLF4_NANOG_7up_GRO4of7_C_7up_phylo___chr4_189484956189485403___1447 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------CTGCACG TATACACCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---TACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTCTCCCGG-------------- ----CTCATCCTGGCCC-AA-AATCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAA-AT CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AATG- GCTCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCTGACTCAACCCACCTGCACAC AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACACGCATG---------- >LTR7up2_chr2_165707552_165716198_5795_ZNF534_EncodeTxn_KLF4_NANOG_44108_7up_GRO3of7_C_7up_phylo___chr2_165715718165716198___1448 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGACATCACATCC CCTGTGAC---------------------------------------------CTGCACT TATATGCTCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACCAAAGAATCACAAAAAA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCATAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC TCTCTTTGACTGTAATTTTCCTTTACCTTCCCA-AATCCTATAA-----------AATG- GCCCCACGC-T-T-ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA---------TTAAAAGCTTTATTGCTCACACAAACCCTG--TTT--GGTGGTCT CTTCGCACAGACACGCATG---------- >LTR7up2_chr7_42870576_42876404_4614_ZNF534_KAP1_EncodeTxn_FOXP1_KLF4_NANOG_44108_7up_GRO3of7_C_7up_phylo___chr7_4287592442876404___1448 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATTGCATCC CCTGTGAC---------------------------------------------CTGCATG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTAAAGTAACTAAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCTGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCTCTTTGACTGTAATTTTCCTTTACCTTCCCG-AATCCTATAA-----------AATG- GCCCCACCA-T-T-ATCTCCCTTCACTGACCCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGTCTG--TTT--GGTGGTCT CTTCACACGGACGCGCACG---------- >LTR7up2_chrX_116812448_116818222_4861_ZNF534_k4me3_TSSflanking_FOXP1_KLF4_NANOG_44108_SOX2_7up_wanghigh_C_7up_phylo___chrX_116817774116818222___1448 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC CCTGTGAC---------------------------------------------CTGCACA TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTAAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA---------TTAAAGGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATG---------- >LTR7up2_chr12_72215009_72215455_h3k27ac_TSSflanking_SOLO_FOXP1_KLF4_NANOG_SOX2_TCF4_7up_C_7up_phylo___chr12_7221500972215455___1446 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------CTGCACA TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTTGGACTCAGCCCACCTGCACCC AGGTGA---------TTAAAAACTTTATTGCTCACACAAAGCCTG--TTT--CGTGGTCT CTTCACACGGAC---CACAT--------- >LTR7up2_chr2_209299313_209304932_3249_transcribed_ZNF534_k4me3_TSS_FOXP1_KLF4_NANOG_44108_SOX2_TCF4_FOXA1_7up_wanghigh_GRO1of7_7up_phylo____chr2_209299313209299790____1446 -GTCAGTCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------CTGCACA TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTAAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCAGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACA- GCCCCACCC-T-T-ATCTCCCTTCACTGACTCT--TTTCGGACTCAGCCCACCTGCACGC AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATAA--------- >LTR7up2_chr11_96180740_96181218_h3k27ac_enh_SOLO_KLF4_NANOG_SOX2_TCF4_7up_C_7up_phylo___chr11_9618074096181218___1447 TGTCAGGCCTCTGAGCCCAAA-----------------------CCAAGCCATCACATCC CCTGTGAC---------------------------------------------TTGCACG TATACGCCCAG------------------------------------------------- -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GATATTACACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAGA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTATACA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTCGCTGACT--CTTTTCGGACTCAGCCCGCCTGTACCC AGGTGA---AA----TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACACACATG---------- >LTR7up2_chr4_16974834_16975319_h3k4me3_weakenh_SOLO_FOXP1_KLF4_NANOG_7up_7up_phylo____chr4_1697483416975319____1449 -GTCAGGCTTCTGAGCCCAAG-----------------------CCAAGCCATC-CATCC CCTGTGAC---------------------------------------------CTGCACG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTAAAGAATCACAAAAGA AGTGA-----ATATGCCCTGA-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTCCCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA---AA----TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCACATGA--------- >LTR7up2_chr9_9041269590418349_3469_ZNF534_k4me3_EncodeTxn_FOXP1_KLF4_NANOG_OCT4_FOXA1_7up_GRO2of7__chr9_9041269590413144____1449 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------CTGCACG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAAGTAAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AA-CACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGGG-------------- ---------------------------AC-CCCTACTCC-TGCCTGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCTCGCCTGCACCC AGGTGA---AA----TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCAGACGGACGTGCATGA--------- >LTR7up2_chr14_98985205_98992939_4963_ZNF534_KAP1_EncodeRepressed_FOXP1_KLF4_NANOG_TCF4_7up_7up_phylo____chr14_9898520598985684____1448 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCG CCTGTGAC---------------------------------------------CTGCACG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTAAAGAATCACAAAACA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCA-------------- ---------------------------AC-CCCCACTCC-TGCCTGCGAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AGTCCTATAA-----------AACA- GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACAGGGACGTGCATGA--------- >LTR7up2_chr1_114037075_114037525_h3k27ac_enh_SOLO_FOXP1_KLF4_MED1_NANOG_44108_SMAD11_TCF4_7up_7up_phylo____chr1_114037075114037525____1450 -GTCAGGCCTCTGAGCCCGAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------CTGCACG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTAAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCATA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-GCCCACTCC-TGCCTGCGAGAGAACAA-GC CCTCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACA- GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC AGGTGA---AA----TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACGCGGACGTGCATGA--------- >LTR7up2_chr19_53831404_53837348_2169_ZNF534_k4me3_TSS_FOXP1_KLF4_NANOG_44108_7up_wanghigh_chimeric_GRO1of7_7up_phylo____chr19_5383140453831854____1450 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------CTGCACG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTAAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TACCCACCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC ACGTGA---AA----TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCGTGA--------- >LTR7up2_chr1_216145601_216152688_4682_ZNF534_k4me3_weakenh_KLF4_NANOG_44108_7up_wanghigh_7up_phylo____chr1_216145601216146051____1450 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------CTGCACG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTAAAGAATCACAAAAGA AGTGA-----ATATGTCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCAGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TC--GTGAAAGTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCA-------------- ---------------------------AC-CCCCACTCC-TACCTGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA---AA----TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATGA--------- >LTR7up2_chr8_34860187_34860639_h3k27ac_weakenh_SOLO_KLF4_NANOG_TCF4_7up_C_7up_phylo___chr8_3486018734860639___1448 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACGACCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAAAATCACAACAGA AATGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCAGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAG ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCCGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA---------TTAAAAGCTTTATTGCTCACACAGAGCCTG--TTT--GGTGGTCT CTTCACAGGGACGCGCATG---------- >LTR7up2_chr3_170681758_170689306_3291_ZNF534_KAP1_k27ac_weakenh_NANOG_44108_TCF4_C_7up_phylo___chr3_170688807170689306___1499 TGTCAGGCCTCTGAGTCCAAG-----------------------CCAAGCCATCACATCC CCTGTGAC---------------------------------------------TTACATG TATATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTC-------------------------------CACCACAAAAGAAGTGTAA ATGGCTGGTCCTTG------------------CC----------TTAT----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AATCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAAAGAACAA-AT CCCCTTTGACTGTAATTTTCCTTTACCTGCCCA-AATCTTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC AGATGA---------TTGAAAGCTTTATTGCTCACACAAAGCCTG--TTT--CGTGGTCT CTTCACACGGACACGCATG---------- >LTR7u1_chr5_97398953_97399401_h3k27ac_EncodeTxn_SOLO_NANOG_C_7up_phylo___chr5_9739895397399401___1448 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC CCTGTGAC---------------------------------------------TTGCATG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAGAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTC-------------------------------CACCACAAAAGAAGTGAAA ATGGCC----------------------------------------------GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTCTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCTACTCC-TGCCTGCCAGAGAACAA-AC CCTCTTTGGCTGTAATTTTTCTTTACCTGCCCA-AATCTTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTTGGACTCAGCCGGCCTGCACCC AGGTGA---------TTAAAAGCTTTATTGTTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACACCCATG---------- >LTR7u1_chr11_63529319_63529768_h3k27ac_TSS_SOLO_NANOG_44108_C_7up_phylo___chr11_6352931963529768___1448 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGGCATTGCATCC CCTCTGAC---------------------------------------------TTGCACG TATATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTC-------------------------------CACCACAAAAGAAGTGAA- ------GGTCCTTA------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCGTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AACCTCCCCAAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCA-------------- ---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAA-AC TCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCTCGCCTGCACCC AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAACCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATG---------- >LTR7u1_chr4_14169948_14175976_3482_1_k4me3_EncodeTxn_KLF4_NANOG_44108_SMAD11_TCF4_FOXA1_7up_C_7up_phylo___chr4_1417552614175976___1449 TGTCAGGCCTCTGTGCCCAAG-----------------------CCAAGCCATTGCATCC CCTGTGAC---------------------------------------------TTGCACG TATATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAATGCCCTGC-CCCGCCTTAACTGAT----------------------- ---GACATTC-------------------------------CACCACAAAAGAAGTGTA- ------GGTCCTTG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTCAAAGTCTTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AACCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCAGCCAGAGAACAA-AA CCCCTTTGACTGTAATTTTCCTTTACCTGCCCA-AATCTTATAA-----------AACG- GCCCCACCC-C---ATCTCCCTTAGCTGACTCTCTTTTCAGACTCAGCCCACCTGTACCC AGGTGA---------TAAACAGCTTTATTGCTCATACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGACGCGCATG---------- >LTR7u1_chr3_38070496_38076739_2846_ZNF534_ZNF90_KAP1_EncodeRepressed_FOXP1_KLF4_NANOG_7up_GRO4of7_C_7up_phylo___chr3_3807629038076739___1449 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGACATTGCATCC CCTGTGAC---------------------------------------------TTGCATG TATATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTC-------------------------------CACCACAAAAGAAGTGTA- ------GGTCCTTG------------------CC----------TTGA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACTTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCCACCCA-AATCTTATAA-----------AACA- GCCCCACCC-C---ATCTCCCTTCACTGACTCTCTTTTCAGACTCAGCCCACTTGTACCC AGGTGA---------TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCACATG---------- >LTR7u1_chr16_47167257_47167745_h3k27ac_EncodeTxn_SOLO_NANOG_SOX2_7up_phylo____chr16_4716725747167745____1488 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCACTGCATCC CCTGTAAC---------------------------------------------TTGCACA TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACGGAAGAATCACAAAAGT AGTGA-----ATATGCCCTGC-CCTGCCTTAACTGAT----------------------- ---GACATTC-------------------------------CACCACAAAAGAAGTGTAA ATGGCCGGTCCTTG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCT---------------- ------------GGCTCAAA-AACCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCCCTT-GACTGTAATTTTCCTTTACCTACCCA-AAGCTTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTTGCTGACTCTCTTTTCAGACTCAGCCTGCCTGCACCC AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCGTG--TTT--GGTGGTCT CTTTACACGGACGCGCATGA--------- >LTR7u1_chr5_80185505_80185953_h3k27ac_enh_SOLO_NANOG_44108_SMAD11_TCF4_C_7up_phylo___chr5_8018550580185953___1447 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCTATCGCATCC CCTGTGAC---------------------------------------------TTGCAGG TATATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATGTGCCCTGC-CCCGCCTTAACTGAT----------------------- ---GACATTC-------------------------------CACCACAAAAGAAGTGTA- ------GGTCCTTG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGA-------------- ----CTCATCCGGGGTCAAA-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-TCCCATTCC-TGCCCACCAGAGAACGA-AC CCCCTTTGACTGTAATTTTCCTTTACCTGCCCA-AATCTTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA---------TTAAAAGCTTTATTGCTCACACAA-GCCTG--TTT--GGTGGTCC CTTCACACGGACGCGCATG---------- >LTR7u1_chr4_64737777_64738276_h3k27ac_enh_SOLO_NANOG_44108_SMAD11_SOX2_TCF4_7up_phylo____chr4_6473777764738276____1498 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC CCTGTGAC---------------------------------------------TTGCACG TATATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATGT-CCCTGC-CTCGCCTTAACTGAT----------------------- ---GACATTC-------------------------------CACCACAAAAGAAGTGTAA ATGGCCAGTCCTTG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGA-------------- ----CTCATCCTGGCTCAAA-AACCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAA-AC CTTCTTTGACTGTAATTTTCCTTTACCTGCCCA-AATCTTATAA-----------AATG- GCCCCACCC-T-T-ATCTCCCTTTGATGACTCTCTTTTTGGTCTCAGCCCGCCTGCGCAC AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCGCACGGATGTGCATGA--------- >LTR7u1_chr18_27232260_27232705_weakenh_SOLO_NANOG_7up_phylo____chr18_2723226027232705____1443 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGACATCGCATCC CCTGTGAC---------------------------------------------TTGCACA TATATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAATGCCCTG------CCTTAACTGAT----------------------- ---GACATTC-------------------------------CACCACAAAAGAAGTGAAA ATGGCCGGTCCTTG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCTAA-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAA-AC CCTCTTTGACTGTAATTTTCCTTTAGGTACCCA-AATCTTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTTGGACTCAGCATGCCTGCACCC AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGCGCATGA--------- >LTR7u1_chr14_82760153_82760600_EncodeRepressed_SOLO_KLF4_NANOG_C_7up_phylo___chr14_8276015382760600___1447 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCAGCGCATCC CCTGTGAC---------------------------------------------TTGCACA TATATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAGTCACAAAAGA AGTGA-----AAATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTC-------------------------------CACCACAAAAGAAGTGTAA ATGGCCGGTCCTTG------------------CC----------TTAA----GTGATGAC GTT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTC-AA-AAACTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCCCTTTGACTATAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTTGGACTCATCCCGCCTGCACCC AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGCGCATG---------- >LTR7u1_chr5_3788374_3788823_TSSflanking_SOLO_NANOG_44108_C_7up_phylo___chr5_37883743788823___1448 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAATGCCCTGC-CCCGCCTTAACTGAT----------------------- ---GACATTC-------------------------------CACCACAAAAGAAGTGTAA ATGGCTGGTCCTTG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCATTCC-TGCCCGCCAGAGAACAA-AT CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AATG- GCCCCACCC-C-T-ATCTCTTTTCACTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCCG--TTT--GGTGGTCT CTTCACACGGACGCGCATG---------- >LTR7u1_chr3_175827485_175836221_5203_ZNF534_EncodeRepressed_NANOG_GRO3of7_7up_phylo____chr3_175827485175827934____1448 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCATG TATATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAGAAGA AGTGA-----AAATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTC-------------------------------CACCACAAAAGAAGTGAAA ATGGCTGGTCCTTG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAA-AC CCCCTTTGACTATAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AATG- GCCCCACCC-C-T-ATCTCCCTTCACTGACTCTCTTTTTAGACTCAGCCCGCCTGCACCC AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACAGGGACGTGAGTGA--------- >LTR7u1_chr4_94166842_94167290_h3k27ac_EncodeTxn_SOLO_FOXP1_NANOG_C_7up_phylo___chr4_9416684294167290___1448 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACA TAGACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTC-------------------------------CACCACAAAAGAAGTGTAA ATGGCCGGTCCTTG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCGTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AATCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AATG- GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA---------TTAAAAACTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATG---------- >LTR7u1_chr12_18195661_18203727_5214_KAP1_EncodeTxn_7up_phylo____chr12_1819566118196158____1446 ---CAGGCCTCTGAGCCCAAG-----------------------CCAAACCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG AATTCACCCAGA------------------------------------------------ -----------------------------TGGCCTGAAATAACTGAAGAATCACAAAAGA AGTGA-----AAATGCCCTGC-CCCAGCTTAACTGAT----------------------- ---CACATTC-------------------------------TACCACAAAAGAAGTGTAA ATGGCTGGTCCTTG------------------CC----------TTAA----GTGATGAC GTT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGC-------------- ----CTCATCCTGGCTCAAA-AATCCCCCACAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACTTTGTG-------------- ---------------------------AC-CCCCACTTC-TGCCCTCCACAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTGCCTACCCA-AATCTTATAA-----------AATG- GCCCCACCC-C-T-ATCTCCCTTGGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGATGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTTATACGGACGCGCATGA--------- >LTR7u1_chrX_57338064_57338564_EncodeTxn_SOLO_NANOG_C_7up_phylo___chrX_5733806457338564___1448 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCAAG TATATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAATGTCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTC-------------------------------CACCACAAAAGAAGTGTAA ATGGCCAGTCCTTG------------------CC----------TTAA----GTGATTAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----TTCATCCTGGCACAAA-AATCTCCCACAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CTCCACTCC-TGCCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-CATCTTATAA-----------AATG- GCCCCACAC-C-T-ATCTCCCTTTGCTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGTTCATG---------- >LTR7u1_chr1_242210318_242210868_h3k27ac_enh_SOLO_NANOG_7up_phylo____chr1_242210318242210868____1447 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCAGG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAATGTCCTGC-CCCGCCTTAACTGAT----------------------- ---GACATTC-------------------------------CACCACAAAGGAAGTGTCA ATGGCTGGTCCTTG------------------CC----------TTAA----GTGATGGC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATTCTGGCTCAA--AATCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGGGAACAA-TC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AATG- GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTTGGACTCAGCCTGCCTGCATCC AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT TTTCATACGGATGTGCGTGA--------- >LTR7u1_chr16_9670530_9677301_2327_ZNF534_KAP1_k4me3_enh_NANOG_44108_wanghigh_GRO1of7_C_7up_phylo___chr16_96768229677301___1448 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGTATCC CCTGTGAC---------------------------------------------TTGCACG TATATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAATGCCCTGC-CCCGCCTTAACTGAT----------------------- ---GACATTC-------------------------------CACCACAAAAGAAATGTAA ATGGCCAGTCCTTG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TACCCGCCAGAAAACAA-AC CCCCTTTGACTGTAATTTTGCTTTACCTACCCA-AATCTTATAA-----------AATG- GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACACACATG---------- >LTR7u1_chr1_173448417_173448865_enh_SOLO_NANOG_C_7up_phylo___chr1_173448417173448865___1448 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACT TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAATGCCCTGC-CCCGCCTTAACTGAT----------------------- ---GACATTC-------------------------------CACCACAAAAGAAGTGTAA ATGGCCAGTCCTTG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-CATCCGCTAGAGAACAA-AC CTCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AATG- GCCCCACCC-C-T-ATCTCCCTTCTCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGG---------TTAAAAGCTTTATTGCTCACACAAAGCCTA--TTT--GGTGGTCT CTTCACATGGACGCGCATG---------- >LTR7u1_chr18_42743802_42744300_h3k27ac_enh_SOLO_NANOG_44108_SMAD11_SOX2_TCF4_7up_phylo____chr18_4274380242744300____1447 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGTATCC CCTGTGAC---------------------------------------------TTGCAGG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAATGCCCTGC-CCCGCCTTAACTGAT----------------------- ---TACATTC-------------------------------CACCACAAAAGAAGTGTAA ATGGCAGGTCCTTG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------CT--GTGAAAGTACTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGTCTGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AATG- GCCCCACCC-C---ATCTCCCTTTGCTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGCACATGA--------- >LTR7up2_chr11_27629072_27634926_3421_ZNF534_k4me3_TSS_FOXP1_KLF4_MED1_NANOG_44108_SOX2_TCF4_FOXA1_7up_wanghigh_C_7up_phylo___chr11_2763447927634926___1447 TGCCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC CCTGTGAC---------------------------------------------TTGCACA TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTC-------------------------------CACCACAAAAGAAGTGTAA ATGGCCAGTCCTTG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAA-CC CCCCTTTGACTGTAATTTTCCCTTACCTACCCA-AATCCTATAA-----------ATT-- GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTCAGACTCAGCCCACCTGCACCC AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACACACATG---------- >LTR7up2_chr18_5641543656421341_3515_ZNF534_ZNF90_KAP1_EncodeTxn_KLF4_NANOG_OCT4_7up_GRO2of7__chr18_5641543656415883____1447 -GTCAGGCCTCTGAGGCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGC-----ATATGCCTTGC-CCCACCTTAACTGAT----------------------- ---GACATTC-------------------------------CACCATAAAAGAAGTAGAA ATGGCCGGGCCTTG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-ACCCACTCC-TGCCTGCCAGAGAACAA-CC CCCCTTTGACTGCAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACA- GCCCCACCC-C---ATCTCCCTTCACTGACTCTCTTTTCAGACTCAGCCCACCTGCACCC AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--GTT--GGTGGTCT CTTCACACGGACACGCATGA--------- >LTR7up2_chr16_59514911_59522964_5304_1_NANOG_GRO3of7_C_7up_phylo___chr16_5952252959522964___1397 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC CCTGTGAC---------------------------------------------TTGCACA TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCC-----AACTG------------------------- ------------------------------------------------------------ --------TCCTTG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTT------------------- ---------CCTGGCTCAAA-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCAGACTCAGCCCACCTGCACCC AGGTGA---------TTAAAAGCTTTATTGCTCACGCAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCACATG---------- >LTR7u1_chr12_123104300_123104799_h3k27ac_weakenh_SOLO_FOXP1_KLF4_NANOG_44108_7up_phylo____chr12_123104300123104799____1448 -GTCAGGCCTCTGAGCCCGAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACC TATACGCCCAGA------------------------------------------------ -----------------------------CGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCGCCTTAACTGAT----------------------- ---GACATTC-------------------------------CACCACAAAAGAAGTATAA ATGGCCGGTCCTTG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACA- GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCTGATTCAGCCCGCCTGCACCC AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACACACATGA--------- >LTR7u1_chr20_32787739_32788208_EncodeTxn_SOLO_NANOG_C_7up_phylo___chr20_3278773932788208___1449 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG CATAAGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTC-------------------------------CACCATAAAAGAAGTATAA ATGGCCGGTCCTTG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATCCCTTTTCCTGG-------------- ----CTCCTCGTGGCTCAAA-AAACTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGAG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTAGAA-----------AATG- GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTT-GGACTCAGCCCACCTGCACTC AGGTGA---------TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGGCGTACATG---------- >LTR7u1_chr4_81420796_81421243_EncodeTxn_SOLO_NANOG_7up_phylo____chr4_8142079681421243____1447 -GTCAGGCCTCTGAGCCCAAA-----------------------CCAAGCCATCGCTTCC CCGGTGAC---------------------------------------------TTGCACG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAACCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTC-------------------------------CACCCCGAAAGAAGTGAAA ATGGCCGGTCCGTG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-CC CCCCTTTGACTATAATTTTCCTTTCCTTACCCA-AATCTTATAA-----------AATG- GCCCCACCC-C---ATCTCCCTTTGCTGACTCTCTTTTCGGATTCAGCCCGCCTGCACCC AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATGA--------- >LTR7u1_chr8_43116803_43117302_EncodeTxn_SOLO_NANOG_C_7up_phylo___chr8_4311680343117302___1498 -GTCAGGCTTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACA TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATTTGCCCTGC-CCCGCCTTAACTGAT----------------------- ---GACATTC-------------------------------CACCACAAAAGAAGTGAAA ATGGCCAGTCCTTG------------------CC----------TTAA----GCGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCACCACAGAACAA-AC CCCCCTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AATG- GCCCTACCC-C-T-ATCTCCCTTGGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA---------TTAAATGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACATGCATG---------- >LTR7u1_chrX_12310027_12310475_EncodeTxn_SOLO_NANOG_44108_C_7up_phylo___chrX_1231002712310475___1447 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCT-TGAC---------------------------------------------TTGCACG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTC-------------------------------CACCACAAAAGAAGTGAAA ATGGCCGGTCCTTG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCACCAGATAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCTCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCAGACTCAACCCGCCTGCACCC AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTC--GGTGGTCT CTTCACATGGACGTGCATG---------- >LTR7u1_chr10_101201003_101201451_EncodeTxn_SOLO_C_7up_phylo___chr10_101201003101201451___1447 TGTTAGGCCTCTGAGCCCAAG-----------------------CCAAGCCGTGGCATCC CCCGTGAC---------------------------------------------TTGCATG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAATACCCTGC-CCTGCCTTAACTGAT----------------------- ---GACATTC-------------------------------CACCACAAAAAAAGTGAAA ATGGCCGGTCCTTG------------------CC----------TTAG----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AA-CTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CATTTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAGCAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG- GCCCCACCC-C-T-GTCTCCCTTCGCTGACTCCCTTTTCAGACTCAGCCCGCCTGCACCC AGGTGA---------TTAAAAGTTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGGCGCGCATG---------- >LTR7u1_chr19_20059608_20060058_EncodeTxn_SOLO_NANOG_7up_phylo____chr19_2005960820060058____1448 -GTCAGGCCTCTGAGCCCAAG-----------------------CCTAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCATG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATAACAAAAGA AGTGA-----AAATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTC-------------------------------CACCACAAAAGAAGTGAAA ATGGCCGGTCCTTG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCTCCGCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACCTTGTG-------------- ---------------------------AC-CTCCACTCC-TGCCCGCCAGAGAAAAA-AC CCCCTTTGACTGTAATTTTCCTCCACCTACCGA-AATCTTATAA-----------AACA- GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAACCTG--TTT--GGTGGTCT CTTCACATGGACGTGCATGA--------- >LTR7u1_chr2_227444484_227444932_EncodeRepressed_SOLO_NANOG_C_7up_phylo___chr2_227444484227444932___1448 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC CCTGTGAC---------------------------------------------TTGCACT TATACACCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAATGCCCTGC-CCCGCCTTAACTGAT----------------------- ---GACATTC-------------------------------CACCACAAAAGAAGTGAAA ATGGCCAGGCCTTG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CTCCACTCC-TGCCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AATG- GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC AGGTGA---------TTGAAAGCTTTATTGCTCACACAAAGCCTA--TTT--GGTGGTCT CTTCACACGGACACGCATG---------- >LTR7u1_chrY_19411964_19427738_4759_1_k27ac_NANOG_GRO3of7_7up_phylo____chrY_1941196419412464____1499 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGACATTGCATCC CCTGTGAC---------------------------------------------TTGAACA TATACGCCTAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAATGCCTTGC-CCTGACTTAACTGAT----------------------- ---GACATTCTAACACAAAAGAAGTGTAAATGGCCGGTCCTTAACACAAAAGAAGTGAAA ATGGCCGGTCCTTG------------------CC----------TTAC----GTGGTGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGATCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCACTAGAGAACAA-AC CGCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACA- GCCCCACCC-C-T-ATCTCCCTTCACTGACTGTCTTTTCAGACTCAGCCGGCCTGCCCCC AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--AGTGGTCT CTTCACACAGATACGCATGA--------- >LTR7u1_chr3_112399751_112400198_h3k27ac_enh_SOLO_NANOG_7up_phylo____chr3_112399751112400198____1447 -GTCAGACCTCTGAGCCTAAA-----------------------CCAAGCCATCGCAACC TTTGTGAC---------------------------------------------TTGCCCT TATACACCTAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAATGCCCTGC-CCCGCCTTAACTGAT----------------------- ---GACATTCCAC-------------------------------CACAAAAGAAGTGAAA ATGGCCGGTCCTTG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AA-CTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCCTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACA- GCCCCACCC-C-T-ATCTCCCTTCACTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC AGGTGA---------TTAAAACCTTTATTGCTCACACGAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGCGCATGA--------- >LTR7u1_chr7_32514434_32514933_h3k27ac_EncodeTxn_SOLO_NANOG_7up_phylo____chr7_3251443432514933____1499 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATATGCCCAGA------------------------------------------------ -----------------------------TGGCCTAAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAATGCCCTGC-CCCGCCTTAACTGAT----------------------- ---GACATTCTACCACAAAAGAAGTGTAAATGGCCGGTCCTCCCCACAAAAGAAGTGAAA ATGGCCGGTCCTTG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAGA-AACCTTCCTTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTCGTG-------------- ---------------------------AC-CCCCACTCC-TACCCGCCAGAGAACAA-AC ACCCTTTGACCGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACA- GCCCCACCC-C-T-ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACACGCATGA--------- >LTR7up2_chr4_125561620_125567456_4857_ZNF534_ZNF90_KAP1_EncodeRepressed_FOXP1_KLF4_NANOG_44108_TCF4_FOXA1_7up_C_7up_phylo___chr4_125567008125567456___1448 TGTTTGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TGGCACG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ----------------------------------------------------CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-CC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGACGCGCATG---------- >LTR7up2_chr9_80137295_80143148_3406_ZNF534_KAP1_EncodeTxn_FOXP1_KLF4_NANOG_FOXA1_7up_GRO3of7_7up_phylo____chr9_8013729580137741____1446 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATATGTCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTAAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAGTGGCCGGTCCT------------------- ----------------------------------------------------CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCA-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-CC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTT--CAGACTCTCTTTTCAGACTCAGCCCACCTGCACCC AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGCGCATGA--------- >LTR7up2_chr7_125909965125915739_4678_ZNF534_KAP1_EncodeTxn_FOXP1_KLF4_NANOG_OCT4_FOXA1_7up_GRO2of7__chr7_125909965125910413____1448 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC CCTGTGAC---------------------------------------------TTGCACA TATATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ----------------------------------------------------CTGTTGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-CC CCCCTTTGACTGTAATATTCCTTTATCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTTGGACTCAGTCCACCTGCACCC AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACAGGGACGTGCATGA--------- >LTR7up2_chr6_14296942_14302823_3454_ZNF534_k4me3_KLF4_NANOG_44108_SOX2_7up_wanghigh_GRO3of7_C_7up_phylo___chr6_1430237614302823___1446 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACA TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTG------ATATGCCTTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCTGGTCCT------------------- ----------------------------------------------------GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGC-------------- ----CTCATCCTGGCTCAAA-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCT-TGCCCGCCAGAGAACAA-CC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCACTGACTCT--TTTCGGACTCAGCCCACCTGCACCC AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGCGCATGA--------- >LTR7up2_chr20_12752946_12753392_h3k27ac_enh_SOLO_KLF4_NANOG_44108_7up_proto7y____chr20_1275294612753392____1444 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC CCTGTGAC---------------------------------------------TTGGACA TACACGCCCACA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAG- AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCTACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ----------------------------------------------------GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AT-CACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CAC-ACTC--TGCCCGCCAGAGAACAA-CC CACCTTTGACTATAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AATG- GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCAGACTCAGCCCACCTGCGCCC AGGTGA---------TTAAAAGCTTTATTGCTCGCACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGATGCGCATGA--------- >LTR7u1_chrY_15692217_15692720_SOLO_NANOG_C_7up_phylo___chrY_1569221715692720___1498 TGTCAGGCCTCTAAGCCCAAG-----------------------CCAAGCCATCATATCC CCTGTGAC---------------------------------------------TTGCACA TATATGTCCAGA------------------------------------------------ -----------------------------TGGCTTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CTCGCCTTAACTGAT----------------------- ---GACATTGCACCACAAAAGAAGTGTAAATGGCCGGTCCTCACCACAAAAGAAATGAAA ATGTCTGATCCTTG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCACA-AATCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AT-CCCCACTCC-TGCCTGCCAGAGAACAA-AC TCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AATG- GCCCCACCC-C---ATCTCCCTTCACTGACTCTCTTTTTGAACTCAGCCCGCCTTCACTC AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT TTTTACACAAACGCGCATG---------- >LTR7u1_chr11_68622705_68632796_3949_ZNF534_ZNF90_KAP1_EncodeTxn_7up_phylo____chr11_6862270568623198____1493 -GTCAGGCCTCTGAGACCAAG-----------------------CCAAGCCATCACATCC CCTGTGAC---------------------------------------------TTGCACA TATACACCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----TTATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACACTCCACCACAAAAGAAATGAAAATGGCTGGTCCTCACCACAAAAGAAGTGTAA ATGGCCAGTCCTTG------------------CC----------TTAA----GTGATGAC GTT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AGCCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGAG-------------- ---------------------------AC-CCCCACTCC-TGCTCGCCAGAGAACAA-AC CCCCTTTG----TAATTTTCCTTTACCTACACA-AATCTTATAA-----------AATG- GCCCCACCC-C---ATCTCCCTTTGCTGACTCT--TTTTGGACTCAGCCCGCCTGCACCC AGGTGA---------TAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--AGTAGTCT CTTCACATGGACGCGCATG---------- >LTR7u1_chr10_9080728990812809_3579_ZNF534_ZNF90_KAP1_EncodeTxn_GRO2of7__chr10_9080728990807737____1397 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTCAC---------------------------------------------TTGCACG TACACACCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CTC----------------------------------- ------------------------------------------------------------ ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-A-CCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCA-------------- ---------------------------AC-CCCTACGCC-TGCTCGCCAGAGAACAA-AA CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATATTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCAGGCACCC AGGTGA---------TTAAAAGCTGTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATGA--------- >LTR7u1_chr10_90812810_90813258_EncodeTxn_SOLO_NANOG_44108_SMAD11_SOX2_TCF4_proto7y____chr10_9081281090813258____1397 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACA TATTCGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCC----------------------------------- ------------------------------------------------------------ ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-A-CCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCA-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCCCTTTGACTGTCATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTCAGACTTAGCCCGCCTGCACCC AGGTGA---------TTAAAAGCTGTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATGA--------- >LTR7up1_chr1_215410117_215415683_3446_1_k4me3_EncodeRepressed_KLF4_NANOG_SOX2_TCF4_7up_GRO5of7_GRO6of7_GRO7of7_C_7up_phylo___chr1_215415235215415683___1448 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------CTGCACG TATACGCCCAGA------------------------------------------------ -----------------------------TGACCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATAGGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGGAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCA-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCC-AATCGTATAA-----------AACA- GCCCCATCC-T-T-ATCCCCCTTCGCTGA--CTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATA---------- >LTR7up1_chr2_187557941_187566148_5677_ZNF534_k4me3_TSS_KLF4_NANOG_44108_TCF4_7up_wanghigh_chimeric_C_7up_phylo___chr2_187565698187566148___1450 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------CTGCACA TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCA-------------- ---------------------------GC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTGGCTGACTCTCTTTTCCAACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGTCATGTCGCTAACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGCGCGTG---------- >LTR7up1_chr1_209448805209454002_3258_ZNF534_k4me3_EncodeRepressed_FOXP1_KLF4_NANOG_OCT4_SOX2_TCF4_7up_GRO2of7__chr1_209448805209449256____1450 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC CCTGTGAC---------------------------------------------CTGCACC TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----ATCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCTACTCC-TTCCCGCCAGAGAACAA-AC CCCCTTTGACGGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTGGGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATGA--------- >LTR7up1_chr9_121790002_121796769_1834_ZNF534_KAP1_k4me3_EncodeRepressed_FOXP1_KLF4_NANOG_44108_7up_GRO3of7_7up_phylo____chr9_121790002121790450____1448 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------CTGCACG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGAAACTGAAGAATCACAAAAGA AGTGA-----ATACGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----TTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCC-ACTCC-TGCCCGCCAGAGAACAA-AC CCCC-TTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCATATGGACGCGCATGA--------- >LTR7up1_chr3_149196809_149197259_h3k27ac_TSS_SOLO_FOXP1_KLF4_MED1_NANOG_44108_SMAD11_SOX2_TCF4_7up_7up_phylo____chr3_149196809149197259____1450 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAATGTAAATGGCCGGTCTT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACAC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC GGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGCGCATGA--------- >LTR7up1_chr15_96871837_96877667_3509_ZNF534_k4me3_weakenh_FOXP1_KLF4_NANOG_44108_FOXA1_7up_wanghigh_C_7up_phylo___chr15_9687721796877667___1450 TATCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------CTGCACG TATGCGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTAAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACGCCAAAAGAACTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TACCTGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGCACATG---------- >LTR7up1_chr10_25768956_25774917_2169_ZNF534_KAP1_EncodeTxn_KLF4_NANOG_7up_GRO3of7_C_7up_phylo___chr10_2577443625774917___1450 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------CTGCACA TATACGCCAAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTAAAGAATCACAAAATA AGTGA-----ATATGCCCTAC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAT ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCGTTTACCTACCCA-AATCCTATGA-----------AACA- GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACTCGAGTG---------- >LTR7up1_chr4_61764218_61770025_3585_ZNF534_KAP1_k4me3_TSS_FOXP1_KLF4_NANOG_44108_SMAD11_FOXA1_7up_wanghigh_C_7up_phylo___chr4_6176954361770025___1448 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGTATCC CCTGTGAC---------------------------------------------CTGCACC TGTACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTAAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCAGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCCAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCCCTTGGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCTCACCC-T-T-ATCTCCCTTCACTGACCC--TTTTCGGACTCAGCCTGCCTGCACCC AGGTGA-----AG--TGAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGCGCATG---------- >LTR7up1_chrY_5324787_5330427_3166_1_k4me3_KLF4_NANOG_44108_TCF4_7up_wanghigh_C_7up_phylo___chrY_53299785330427___1420 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------CTGCACG TATATGCCCGGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTAAAGAATCACAAAAGA AGTGA-----AAATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC GTT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGATCAGA-A-------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------------ACTCC-TACCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATG---------- >LTR7up1_chrX_9210024092105917_3253_ZNF534_k4me3_weakenh_FOXP1_KLF4_MED1_NANOG_OCT4_FOXA1_7up_wanghigh_chimeric_GRO2of7__chrX_9210543792105917___1449 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------CTGCAC- TATATGCCCGGA------------------------------------------------ -----------------------------TGGCCTGAACTAACTAAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TACCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCCGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATG---------- >LTR7up1_chr5_44236340_44236852_weakenh_SOLO_KLF4_NANOG_44108_7up_7up_phylo____chr5_4423634044236852____1450 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------CTGCACG TATATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTAAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATG--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TACCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCTTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT TTTCACACGGACGCTCATGA--------- >LTR7up1_chr12_73000876_73001358_h3k27ac_EncodeTxn_SOLO_KLF4_NANOG_44108_7up_7up_phylo____chr12_7300087673001358____1448 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAT---------------------------------------------CTGCACG TATATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTAAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----TTGATGAC GTT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAACACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC---CCACTCC-TACCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCGCCACCC-T-T-ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGCTGCTCACATAAAGCCTG--TTT--GGTGGTCT CTTCACAAGGACGCGCATGA--------- >LTR7up1_chr9_1294834512954128_3374_ZNF534_KAP1_k4me3_EncodeTxn_FOXP1_KLF4_NANOG_OCT4_FOXA1_7up_wanghigh_GRO2of7__chr9_1294834512948825____1449 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC CCTGTGAC---------------------------------------------CTGCACG TATATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTAAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCAGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCAACTCC-TACCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCT-T-T-ATCTCCCTCCGCTGACTCTCTTTTCGGACTCAG-GCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--TGTGGTCT CTTCACACGGACGCGCATGA--------- >LTR7up1_chr16_13352583_13358061_3395_ZNF534_k4me3_enh_FOXP1_KLF4_NANOG_44108_SOX2_TCF4_FOXA1_7up_wanghigh_GRO1of7_C_7up_phylo___chr16_1335757613358061___1449 TGTCAGGCCTCTAAGCCCAAG-----------------------CCAAGCCATCACATCC CCTGTGAC---------------------------------------------CTGCACG TATATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTAAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCAT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TACCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTATCCA-AATCCTATAA-----------AACG- GCCCCACC--C-T-ATGTCCCTTCGCTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATG---------- >LTR7up1_chr19_22568270_22575020_3308_ZNF534_EncodeTxn_KLF4_NANOG_TCF4_7up_7up_phylo____chr19_2256827022568751____1450 -GTCAGGCCTCTGAGCCCAAG-----------------------GCAAGCCATCGCATAC CCTGTGAC---------------------------------------------TTGCACG TATACACCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTAAAGAATCACGAAAGA AGTAA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------AAC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TACCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTCCCCA-AATCCTATAA-----------AATG- GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAACCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCACATGA--------- >LTR7up1_chr12_59323188_59328986_3533_ZNF534_k4me3_weakenh_FOXP1_KLF4_NANOG_44108_SOX2_TCF4_7up_wanghigh_C_7up_phylo___chr12_5932850559328986___1450 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------CTGCACG TATACACCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTAAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACACTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTCTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCCTGTG-------------- ---------------------------AC-CCCCACTCC-TACTCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGCCTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCACATG---------- >LTR7up1_chr3_54634484_54640204_3356_ZNF534_k4me3_enh_KLF4_MED1_NANOG_44108_SOX2_TCF4_7up_wanghigh_chimeric_C_7up_phylo___chr3_5463975354640204___1450 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTATGAC---------------------------------------------ATGCACG TACACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCAGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCGCTCC-TACCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTAACCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTCGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATG---------- >LTR7up1_chr5_147869836_147874526_2830_transcribed_ZNF534_k4me3_TSS_FOXP1_KLF4_MED1_NANOG_44108_SMAD11_SOX2_TCF4_7up_wanghigh_chimeric_GRO1of7_C_7up___chr5_147874078147874526___1448 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGTATCC CCTGTGAC---------------------------------------------TTGCACG TATAAGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCAGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCTTGA-------------- ----CTCATCCTGGCTCAAA-AAGCAC--CCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCC-------------- ---------------------------AC-CCCCACTCC-TACCCGCCAGAGAACAA-AC TCCCTTTAACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATG---------- >LTR7up1_chr8_127431703127437464_4857_ZNF534_EncodeRepressed_KLF4_NANOG_FOXA1_7up_GRO2of7__chr8_127431703127432147____1444 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCCCATCC CCTGTGAC---------------------------------------------TTGAA-- TA----CCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCAGTCCT------------------- ------------TG------------------CC----------TTAA----GTGGTGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAATCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATGA--------- >LTR7up1_chr8_97200770_97206656_3642_ZNF534_ZNF90_KAP1_EncodeTxn_FOXP1_NANOG_44108_7up_GRO1of7_7up_phylo____chr8_9720077097201220____1450 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGTCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACACCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACCAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCAGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------CCC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-AGCCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTCGCTGACTATCTTTTCGGACTCAGCCTGCCTGCAACC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGTGCATGA--------- >LTR7up1_chr4_8482399_8488709_3142_ZNF534_ZNF90_KAP1_EncodeTxn_KLF4_NANOG_7up_wangmod_GRO1of7_C_7up_phylo___chr4_84882628488709___1447 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TGTATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGAGGCAAA-AAGCTTCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------G---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGTCCACCAGAGAACAA-AC CTCCTTTGACTGTAATTTTCCTTTACCTAACCA-AATCTTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCGCTGACTC---TTTTGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCTCATG---------- >LTR7up1_chr17_54345638_54346137_h3k27ac_EncodeTxn_SOLO_NANOG_SOX2_7up_7up_phylo____chr17_5434563854346137____1448 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAATAATCACAAAAGA AGTGA-----ATATGCCCTGC-CTTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCTGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC GTT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCTCCCCAAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCA-------------- ---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTGCCCA-AATCTTATAA-----------AACG- GCCCCACCC-C-T-ATCTCGCTTCACTGACTTTCTTTTTGGACTCAGCCCGCCTGCACCC AGGGGA-----AA--TTAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGATGCGCAT----------- >LTR7up1_chr18_57064649_57072502_4950_ZNF534_k4me3_EncodeRepressed_KLF4_NANOG_TCF4_7up_GRO3of7_C_7up_phylo___chr18_5707205257072502___1450 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATTGCATCC CCTGTGAC---------------------------------------------TTGCATG TACATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAATGCCCTGC-CCCGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCTGGTCCT------------------- ------------TC------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTGCCCA-AATCTTATAA-----------AACA- GCCCCACCC-C-T-ATCTCCCTTCGCTGACTGTCTTTTTGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCTCATG---------- >LTR7up1_chr2_199179365_199185671_4843_ZNF534_ZNF90_KAP1_k4me3_EncodeTxn_KLF4_NANOG_7up_7up_phylo____chr2_199179365199179814____1449 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACC TATATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAATGCCCTGC-CCCGCCTTAACTGAT----------------------- ---GACATTCCACCTCAAAAGAAATGTAAATGGCTGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCTTTTTCCTGG-------------- ----CTCATGATGGCTCAAA-AA-CACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCAACCC-TGCCCACCAGAGAACAA-AT CCCCTTTGACTGTAATTTTTCTTTATCTGCCCA-AATCTTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCGATGACTGTCTTTTCGGACTCAGCCTGCCTGCCCCC CTGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGATGCGAGTGA--------- >LTR7up1_chr2_209078020_209084376_4940_ZNF534_EncodeTxn_FOXP1_NANOG_FOXA1_7up_GRO3of7_7up_phylo____chr2_209078020209078469____1449 -GTCAGGTCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTCTGAC---------------------------------------------TTGCAGG TATATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAATGCCCTGC-CCCGCCTTAACTGAT----------------------- ---GACATTCCACCAAAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCTTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AA-CTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAA-AC CCCCTTTGACTGTAATTTTGCTTTACCTGCCCA-AATCTTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCTCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGATGTGCATGA--------- >LTR7up1_chr3_177665834_177671132_3349_1_EncodeTxn_NANOG_FOXA1_7up_GRO4of7_C_7up_phylo___chr3_177670681177671132___1449 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCACTGCATCC CCTGTGAC---------------------------------------------TTGCACA TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCAAAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------AC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTTCTGG-------------- ----CTCATCCTGGCTCAAA-AA-CTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCT-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCCCTCTGACTGTAATTTTCCTTTACCTGCCCA-AATCTTATAA-----------AATG- GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGCGCATG---------- >LTR7up1_chr1_229696942_229697395_enh_SOLO_KLF4_NANOG_7up_7up_phylo____chr1_229696942229697395____1449 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAAT-CCCTGC-CCCGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACT--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCA-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTGCCCA-AATCTTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTGGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCGCCC AGGTGA-----AA--TCAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGCGAGTGA--------- >LTR7up1_chr13_96001094_96001549_enh_SOLO_KLF4_NANOG_7up_7up_phylo____chr13_9600109496001549____1449 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----ATGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCTCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTGCCCA-AATCTTATAA-----------AACG- GCCCCACCC-C---ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATGA--------- >LTR7up1_chr3_185949808_185950258_h3k4me3_EncodeTxn_SOLO_KLF4_NANOG_7up_7up_phylo____chr3_185949808185950258____1450 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCCGTGAC---------------------------------------------TTGCACG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAATCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGAG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CTCCTTTGACTGTAATTTTCCTTTGCCTGCCCA-AATATTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCACTGACTCTCTTTTCGGACACAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACAGGGACGTGCATGA--------- >LTR7up1_chr1_207633751_207634199_h3k27ac_enh_SOLO_FOXP1_KLF4_NANOG_44108_SOX2_TCF4_7up_C_7up_phylo___chr1_207633751207634199___1448 TGTCAGGCCTCTGAACCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACACCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAATGCCCTGC-CCCGCCTTTACTGAT----------------------- ---GACATTCCACCACAAAAGAAATGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTTC-TGCCCGCCAGAGAACAA-AG CCCCGTTGACTGTAATTTTCCTTTACCTGCCCA-AATCTTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCT--TTTCAGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGATCT CTTCACAGGGACGTGCATG---------- >LTR7up1_chr4_179166476179170568_3066_ZNF534_k4me3_TSS_KLF4_NANOG_OCT4_7up_wanghigh_GRO2of7__chr4_179170120179170568___1448 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCATG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCCAAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GATATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAAAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTT--GGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACAGGGACGCGCATG---------- >LTR7up1_chr5_136551572_136552022_h3k27ac_EncodeRepressed_SOLO_KLF4_NANOG_7up_C_7up_phylo___chr5_136551572136552022___1450 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC CCTGTGAC---------------------------------------------TTGCACG TATACACCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATACGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCTGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAT ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAATCCTTTTCCTGC-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAA----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTGTAA-----------AACA- GCCCCACCC-T-T-ATCTCCCTTCCCTGACTCTCTTTTCGGACTCAGCCCCCCAGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAACCTG--TTT--GGTGGTCT CTTCACGCAGACACACATG---------- >LTR7up1_chr11_6069822_6075884_3302_ZNF534_EncodeTxn_FOXP1_KLF4_NANOG_7up_C_7up_phylo___chr11_60754346075884___1450 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC CCTGTGAC---------------------------------------------TTGCACG TATATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTGTAA-----------AACG- GTCCCACCC-T-T-ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGACGCGCATG---------- >LTR7up1_chr12_72703222_72708969_3542_ZNF534_ZNF90_KAP1_EncodeRepressed_KLF4_NANOG_7up_7up_phylo____chr12_7270322272703672____1450 -GTCAGGCCTTTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATAGGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCTTGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CATCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAAAAA-AC CCCGTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTCACTGACTCTCTTTTCCGACTCAGCCCGCCTGCATCC AGGTGA-----AA--TGAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTTACACGGACACGCATGA--------- >LTR7up1_chr4_79553970_79559709_4752_ZNF534_k4me3_EncodeRepressed_KLF4_NANOG_SOX2_FOXA1_7up_wanghigh_GRO3of7_C_7up_phylo___chr4_7955926079559709___1449 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC CCTGTGAC---------------------------------------------TTGCCGG TATATGCCCTGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGACTGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTAG-------------- ----CTCATCCTGGCTCAAA-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CATCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCACTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGATGCGCATG---------- >LTR7up1_chr3_148414244148420096_3502_ZNF534_KAP1_EncodeTxn_KLF4_NANOG_OCT4_7up_GRO2of7__chr3_148414244148414694____1450 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATTC CCTGTGAC---------------------------------------------TTGCACA TATATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCTTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCTGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCTTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CATCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAA-CC CCCCTTTGACTATAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCAGACTCAGCCCGCCTGTACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACATACACGCATGA--------- >LTR7up1_chr9_82883733_82889489_4706_ZNF534_k4me3_enh_FOXP1_KLF4_NANOG_44108_SMAD11_SOX2_TCF4_FOXA1_7up_wanghigh_GRO1of7_7up_phylo____chr9_8288373382884183____1449 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCGCCTTAACTGGT----------------------- ---GATATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTAACCA-AATCCTATAA-----------AACG- GCCCCACCC-C---ATTTCCCTTTGCTGACTCTCTTTTCAGACTCAGCCCACCTGCCCCC AGGTGA-----AA--TAAACTGCCATGTTGCTCACACAAAGCATG--GTT--CGTGGTCT CCTCACACAGACGCACATGA--------- >LTR7up1_chrX_142563684_142564133_EncodeTxn_SOLO_NANOG_7up_7up_phylo____chrX_142563684142564133____1448 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAGGA AGTGA-----AAATGCTCTGC-CCCGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAACTGGCTGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGA-AGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CATCTCGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTGCCCA-AATCCTATAA-----------AACG- GCCCCACCC-C---ATCTCCCTTCGCTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--AGTAGTCT CTTCACACAGACACCCATGA--------- >LTR7up1_chr4_156600196_156606034_3670_ZNF534_ZNF90_KAP1_EncodeTxn_KLF4_NANOG_44108_7up_7up_phylo____chr4_156600196156600646____1450 -GTCAGGCCTCAGAGCCCAAG-----------------------CTAAGCCATCGTATCC CCTGTGAC---------------------------------------------TTGCACG TATATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATGTGCCCTGC-CCCGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCTGGTCCC------------------- ------------TG------------------AC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--CTGGAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCACAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCCCTTTGACTATAATTTCCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTAGCTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACAAGGACGCGCAGGA--------- >LTR7up1_chr1_99509511_99515367_3378_ZNF534_ZNF90_KAP1_EncodeTxn_KLF4_NANOG_SOX2_TCF4_FOXA1_7up_7up_phylo____chr1_9950951199509963____1450 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCATATCC CCTGTGAC---------------------------------------------TTGCACG TATATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCTACCACAAAAGAAGTGTAAATGGCCTGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------GC-CCCCACTCC-TGCCCACCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTGCCTTTGCTGACTCTCTTTTCAGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGTGCATGA--------- >LTR7up1_chr6_10575556_10576054_h3k27ac_EncodeTxn_SOLO_KLF4_NANOG_7up_7up_phylo____chr6_1057555610576054____1449 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC CCTGTGAC---------------------------------------------TTGCACG TATATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCTTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTGA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCGTCCTGGCTCAAA-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG- GCCCCACCC-C---ATCTCCCTTTGCTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGTGCATGA--------- >LTR7up1_chr1_64349943_64355761_4830_ZNF534_k4me3_weakenh_KLF4_NANOG_SOX2_TCF4_7up_GRO4of7_C_7up_phylo___chr1_6435531864355761___1443 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATTGCATCC CCTGTGAC---------------------------------------------TTGCAC- ------TTCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTTACTGAAGAATTACAAAAGA AGTGA-----ATATGCTCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACT--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTTGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTC--TTT--GGTGGTCT CTTCACACGGACGCGCATG---------- >LTR7up1_chr6_142649498_142649948_h3k27ac_enh_SOLO_KLF4_NANOG_7up_7up_phylo____chr6_142649498142649948____1450 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATTGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACGTCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCTCTGC-CCCATCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCTGGTCCT------------------- ------------CG------------------CC----------TTAA----GTGATGAT ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAGA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-CC CCCCTTTGACTATAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTA--TTT--GGTGGTCT CTTCACACGGACGCACATGA--------- >LTR7up1_chr2_75213731_75219537_3297_ZNF534_ZNF90_KAP1_EncodeRepressed_FOXP1_KLF4_NANOG_7up_GRO5of7_GRO6of7_GRO7of7_C_7up_phylo___chr2_7521908775219537___1450 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACA TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAC----------------------- ---CACATTCCACCACAAAAGAAGTGTAAATGGCTGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCCGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAA-CC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTGTAA-----------AATG- GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCCG--TTT--GGTGGTCT CTTGACACGGACGCGCATG---------- >LTR7up1_chr1_185948279_185954216_3622_ZNF534_KAP1_k4me3_EncodeRepressed_FOXP1_KLF4_NANOG_44108_SMAD11_7up_chimeric_C_7up_phylo___chr1_185953764185954216___1450 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACA TATACTCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCAAAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAA-CC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGATGCGCATG---------- >LTR7up1_chr5_18668843_18674598_3428_ZNF534_k4me3_enh_KLF4_MED1_NANOG_44108_SMAD11_TCF4_FOXA1_7up_wanghigh_C_7up_phylo___chr5_1867415318674598___1445 TGTCAGGCCTCTGAGCCCAGG-----------------------CCAAGCCATCACATCC CCTGTGAC---------------------------------------------TTGCACA TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAATGTAAATGGCTGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATC--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTAG-------------- ----CTCATCCTGGCTCAAA-AAGCACCTCCAA--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCCACCAGAGAACAA--C CCCCTT----TGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AATG- GCCCCACCC-C-T-ATCGCCCTTCCCTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC AGGTGA-----AA--CAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATG---------- >LTR7up1_chr6_131295357_131301196_3448_ZNF534_k4me3_weakenh_KLF4_MED1_NANOG_44108_TCF4_FOXA1_7up_GRO1of7_7up_phylo____chr6_131295357131295806____1449 -GTCAGGCCTCTGAGCCCAAG-----------------------CCCAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACA TATATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CGCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAACGGCCGGTCCT------------------- ------------TG------------------TC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCGAG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGGG-------------- ---------------------------AC-CCCCGCCCC-TGCCCACCAGAGAACAA--C CCCCTTTGACTGTAATTTTCCTTTACCTTCCCA-AATCCTATAA-----------AACG- GCCGCACCC-C-T-ATCTCCCTTGGCTGACTCTCATTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACACGCATGA--------- >LTR7up1_chr18_32281776_32282214_SOLO_KLF4_NANOG_7up_7up_phylo____chr18_3228177632282214____1438 -GTCAGCCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACCGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTAG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGGACAA--C CCCCTT-----------TTCCATTACCTTCCCA-AATCCTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGTGCATGA--------- >LTR7up1_chr6_94553919_94559610_3524_ZNF534_k4me3_weakenh_KLF4_NANOG_FOXA1_7up_wanghigh_GRO4of7_C_7up_phylo___chr6_9455916194559610___1449 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACC TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGACTCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCTAGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACCCC-TGCCCACCAGAGAATAA--C CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTTACACAAAGCCTG--TTT--GGTGGTCT CCTCACACGGACACGCATG---------- >LTR7up1_chr14_5089316250896882_3066_ZNF534_KAP1_k4me3_weakenh_KLF4_NANOG_7up_chimeric_GRO2of7__chr14_5089316250893610____1448 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCAGG TATCTGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTATAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ACT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAGA--AGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACCCC-TGCCCACCAGAGAACAA--C CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACA- GCCCCACCC-C-T-ATCTCCCTTGGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATGA--------- >LTR7up1_chr3_78581212_78588919_4876_ZNF534_KAP1_EncodeTxn_KLF4_NANOG_7up_GRO4of7_C_7up_phylo___chr3_7858847278588919___1446 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC CCTGTGAC---------------------------------------------TTGCATG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAG---TGTAAATGGCCTGTCCT------------------- ------------TG------------------CT----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAACACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACCCC-TGCCCACCAGAGAACAA--C CCCCTTTGACTGTAATTTTCCATTACCTTCCCA-AATCCTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTCTGCTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGTGCATG---------- >LTR7up1_chr19_52789774_52790222_h3k27ac_EncodeTxn_SOLO_KLF4_NANOG_7up_C_7up_phylo___chr19_5278977452790222___1448 TGTCAGGCCTCTGAGCCCAGG-----------------------CCAGGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTAAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TACCCACCAGGGAACAA-AC CCCCTTTGACTGTAGTTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCACTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCAAACAAAGGCTG--TTT--GGTGGTCT CTTCACACGAATGCTCA------------ >LTR7up1_chrY_4355393_4361230_3241_KAP1_NANOG_7up_GRO5of7_GRO6of7_GRO7of7_C_7up_phylo___chrY_43607834361230___1447 --TCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTCAC---------------------------------------------TTGCACG TATACACCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATACGCCCTGC-CCT-CCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGCAAACGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCA-------------- ---------------------------AC-CCCCACTCC-TGCCCTCCAGAGAACAA-CC CCCCTTTGACTATAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACA- GCCCCACCC-C-T-AACTCCCTTCGCTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCACGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGATGCGCATG---------- >LTR7up1_chrX_90773313_90779155_3356_ZNF534_KAP1_EncodeRepressed_FOXP1_KLF4_NANOG_7up_C_7up_phylo___chrX_9077870790779155___1448 --TCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTCAC---------------------------------------------TTGCACG TATACACCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATACACCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGCAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCTTCAGAGAACAA-CC CCCCTTTGACTATAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACA- GCCCCACCC-C-T-ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGATGCGCATG---------- >LTR7up1_chr4_155108278_155114237_4974_ZNF534_ZNF90_KAP1_EncodeTxn_NANOG_7up_GRO4of7_C_7up_phylo___chr4_155113787155114237___1450 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCACCT CCTGTGAC---------------------------------------------GTGCACA TATACGCCCACA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAAAATCACAAAAGA AGTGA-----ATATGCCCTGA-CCCGCCTTAACTGAT----------------------- ---GACATCCCACCACAAAAGAAGTGAAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AACCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACA- GCCCCACCC-C-T-ATCTCCCTTCACTGAATCTCTTTTCAGACTCAGCCTGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGCGCATG---------- >LTR7up1_chr4_159425389_159425839_h3k27ac_weakenh_SOLO_NANOG_7up_C_7up_phylo___chr4_159425389159425839___1450 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTTCATG TATATGTCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAATGACCTGC-CCCGCCTTAACTGAT----------------------- ---AACATTCCACCGCAAAAGAAGTGAAAATGGCCATTCCT------------------- ------------TG------------------CT----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCA-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCTA-AATCTTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTCAGACTCAGCCTGCCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTAGTCT CTTCACACGGACGTACATG---------- >LTR7up1_chr15_101072487101078293_4824_ZNF534_ZNF90_KAP1_k27ac_EncodeTxn_wanghigh_GRO2of7__chr15_101072487101072924____1437 --TCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATATGCCTAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAAAGGCCGGTCCT------------------- ------------TG------------------AC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--ATGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACGTTGCC-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-AC CCCCTT----------TTTCCTTTACCTACCCA-AATCTTATAA-----------AACG- GCCTCACGC-C-T-ATCTCCCTTCACTGACTCCCTTTTCGGACTCAGCCCACCTGCGCCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGTGCAT----------- >LTR7up1_chr6_157700642_157706582_3234_ZNF534_ZNF90_KAP1_EncodeTxn_NANOG_GRO4of7_C_7up_phylo___chr6_157706086157706582___1435 TATCAGGCCTCTGAGCCTGAG-----------------------CCAAGCCATCGCATCC TCTCTGAC---------------------------------------------TTGCACA TATATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAGAAGA AGTGA-----AAATGCCCTGC-TCCGCCTTAACTGAC----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCT---------------- -------ATCCTGGCTCAAA-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCGTGCCAGAGAACAA-AC CCCCTT----------TTTCCTTTACCTACCCA-AATCTTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCC CTTCACATGGACGCGCATG---------- >LTR7up1_chr11_2339319_2339771_weakenh_SOLO_NANOG_7up_phylo____chr11_23393192339771____1449 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTACCTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATCCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAAA-AATCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACT-C-TGCTCGCCAGAGAACAA-CT CCACTTTGACTGTAATTTTCCTTTATCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTCGCTGACTGTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCGCGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCGTGA--------- >LTR7up1_chr4_181949982_181950417_h3k27ac_enh_SOLO_KLF4_NANOG_44108_SMAD11_SOX2_TCF4_7up_7up_phylo____chr4_181949982181950417____1435 ---CAGGTCTCTGAGCCTAAG-----------------------CCAAGCCATCACATCG CCTGTGAC---------------------------------------------TTGCACG TATATACGCAGA------------------------------------------------ -----------------------------TGGCCTG---------AAGAATCACAAAAGA AGTTA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCTGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGCCCTTTTCCTGG-------------- ----CTCATGCTGGCTCAAA-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTACG-------------- ---------------------------AC-CCCCACT-C-TGCCCACCAGAG---AA-CT CCCCTTTGACTGTAATTTTCCTTTATCTACCCA-AATCCTACAA-----------AATG- GCCCCACCC-T-T-ATCTTCCTTCGCTGAGTCCCTTTTCGGACTCAGCCCGCCTGCGCCC AGGTGA-----AA--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACAGGGACGCGCATGA--------- >LTR7up1_chr11_6657359766576956_4119_ZNF534_ZNF90_KAP1_EncodeTxn_NANOG_OCT4_7up_GRO2of7__chr11_6657359766574046____1449 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC CCTGTGAT---------------------------------------------TTGCACG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAATAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCAGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CATCTTGCA-------------- ---------------------------AC-CCCCACT-C-TGCCCGCCAGAGAACAA-CT CCCCTTTGACTGTAATTTTCCTTTATCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTCTCTGACTCTCTTTTCAGACTCAGCCCGCGTGCACCC AGGTGA-----AG--TAAACAGCCATGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGCGCATGA--------- >LTR7u1_chr13_36324687_36325130_h3k27ac_weakenh_SOLO_NANOG_C_7up_phylo___chr13_3632468736325130___1442 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC GCGGTGAC---------------------------------------------TTG-ACG TATATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAATGCCCTCC-TCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCTGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACT-C-TGCCTGCCAGAGAACAA-AT CCCCTTTGACTGTAATTTTCCTTTATCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGTCTCAGCCCGCTTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGCACG---------------- >LTR7u1_chrX_1081978_1082419_EncodeRepressed_SOLO_NANOG_7up_phylo____chrX_10819781082419____1441 -GTGAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATATGCCCAGG------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAACGTCCTGC-CCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCGGTCCT------------------- ---------------------------------------------TAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAATCCTTTTCCTGG-------------- ----CCCATCCTGGCTCAGA-AAGTTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCA-------------- ---------------------------AC-CTCCACT-CCTGCCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTATCTACCCA-AATCCTATAA-----------AAGA- GCCCCACCC-T-T-ATCTCCCTCCCCTGACTCTGTTTTCGGACTCAGCCCGCCTGCACGC AGGTGA---------TTAAAAGTTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT C--CACACGGACGTACATGA--------- >LTR7u1_chrY_1081978_1082419_SOLO_7up_phylo____chrY_10819781082419____1441 -GTGAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATATGCCCAGG------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAACGTCCTGC-CCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCGGTCCT------------------- ---------------------------------------------TAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAATCCTTTTCCTGG-------------- ----CCCATCCTGGCTCAGA-AAGTTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCA-------------- ---------------------------AC-CTCCACT-CCTGCCCGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTATCTACCCA-AATCCTATAA-----------AAGA- GCCCCACCC-T-T-ATCTCCCTCCCCTGACTCTGTTTTCGGACTCAGCCCGCCTGCACGC AGGTGA---------TTAAAAGTTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT C--CACACGGACGTACATGA--------- >LTR7u1_chrY_15799724_15800172_SOLO_NANOG_C_7up_phylo___chrY_1579972415800172___1447 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCATG TATATGCCCAGG------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAATGCCCTGC-CCTGCCTTAACGGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCGGTCCT------------------- ------------TG------------------TC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTG-AAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AATCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTACG-------------- ---------------------------AT-CCTCACT-CCTGTCTGCCAGAGAATAA-AT CCCCTTTGACTGTAATTTTCCTTTATCTACCAA-AATCCTATAA-----------AACA- GCCCCACCC-T-T-ATCTCCCTTCACGGACTCTCTTTTTGGACTGAGCCTGCCTGCACCC AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACACAAATG---------- >LTR7u1_chr4_134914245_134914710_EncodeTxn_SOLO_NANOG_7up_phylo____chr4_134914245134914710____1434 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCATG TATATGCCCAGG------------------------------------------------ -----------------------------TGGCCGGAAGTAACTGAAAAATCACAAAAGA AGTGA-----AAATGCCCTGC-CCCGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAATATGGCCGGTCCT------------------- ------------TG------------------TC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--ATGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AA-CTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTAGCC-------------- ---------------------------AC-CCCCACC-CCTGCCCACCAGAGAACAA-AT CCCCTTTGACTGTAATTTTCCTTTATCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATC---------------------------------GCCTGCACCC AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGTACATGA--------- >LTR7u1_chr1_237541577_237542025_h3k27ac_EncodeRepressed_SOLO_NANOG_C_7up_phylo___chr1_237541577237542025___1448 TGTGAGGCCTCTGAGCCTAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------ATGCACC TATATGCCCAGG------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAATGCCCTGC-CCCGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCGGTCCT------------------- ------------TG------------------TC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAA----CACCTTGTG-------------- ---------------------------AC-CCCCACT-CCTGCCCACCAGAGAACAA-AT CCCCTTTGACTGTAATTTTCCTTTATCTACCCA-AATCCTATAA-----------AATG- GCACCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA---------TTAAAAGCTTTAATGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATG---------- >LTR7u1_chr9_12440912_12441412_h3k27ac_EncodeTxn_SOLO_NANOG_44108_SOX2_C_7up_phylo___chr9_1244091212441412___1468 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCAGTGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACGCCCAGG------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GATATTCCACCACAAAAGAAGTGAAAATGGCCGGTCCT------------------- ------------TG------------------TC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACT-CCTGCCCGCCAGAGAACAA-AT CCCTTTTGACCATAATTTTCCTTTATCTACCCA-AATCCTATAA-----------AACA- GTCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCCGCACCC AGGTGA---------TTAAAAGCTTTATTGCTCACACACAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCGTG---------- >LTR7u1_chr5_116945628_116946177_h3k27ac_weakenh_SOLO_KLF4_NANOG_44108_SOX2_C_7up_phylo___chr5_116945628116946177___1447 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCGGTGAC---------------------------------------------TTGCACG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACT-AAGAATCACAAAAGA AGTGA-----AAATGCCCTGC-CCCGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCGTGGCTCAAA-AATCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACT-CTTGCCCGCCAGCGAACAA-AT CCCCTTTGACTGTAATTTTCCTTTATCTACCCA-AATCCTGTAA-----------AACA- GCCCCACCC-T-T-ATCTCCCTTCGTTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGCACATG---------- >LTR7u1_chr6_130711844_130712292_weakenh_SOLO_NANOG_7up_phylo____chr6_130711844130712292____1448 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC CCGGTGAC---------------------------------------------TTGCACA TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAACGGCTGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCGTTCTGGCTCAAA-AATCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------GAG----CATCTTGCG-------------- ---------------------------AC-CCTCACT-CCTGCCCGCCAGAGAACAA-AT CCCCTTTGACTGTAATTTTCTTTTATCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGTACCC AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGATGCCCATGA--------- >LTR7u1_chr11_122546527_122555602_5651_ZNF534_ZNF90_KAP1_EncodeRepressed_GRO3of7_7up_phylo____chr11_122546527122547025____1467 -GTCAGGCCTCTTAGCCCAAG-----------------------CCAAGCCATTGTATCA CCTGTGAC---------------------------------------------TTGCATG TATATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAATGCCCTGC-CCCGCCTTAACTGAT----------------------- ---GACATTGCACCACAAAAGAAGTGAAAATGTCCAGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCATGG-------------- ----CTCATCCTGGCTCA-A-AAACTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCA-------------- ---------------------------AC-CCCCACT-CCTGCCCACCAAAGAACAA-AT CCCCTTTGACTGTAATTTTCCTTTATCTACCCA-AATCCTATAA-----------AATG- GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CCTCACACAGACACGCATGA--------- >LTR7u1_chr1_203005442_203005876_h3k27ac_TSS_SOLO_NANOG_C_7up_phylo___chr1_203005442203005876___1434 TATCAGGCCTCTGAGCCCAAG-----------------------CCACGCCACCGCATCC CTGGTGAC---------------------------------------------TTGCACG TGTACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAG- --TGA-----AAATGCCCTGC-CCCGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTG---------------------------------- --------------------------------------------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCA---------A-A-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACT-CCTGCCCACCAGAGAACAA-AT CCCCTTTGACTGCAATTTTCCTTTATCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTCACTGACTCTCTTTTCCGACTCAGCCCGCCTGCACCC AGGTGA---------TTAAGAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGACGCGCATG---------- >LTR7u1_chr3_71925473_71925971_h3k27ac_weakenh_SOLO_KLF4_NANOG_44108_SOX2_7up_phylo____chr3_7192547371925971____1466 -GTCAGGCCTCTGTGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCATG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCA-A-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACT--CTGCCCGCCAGAGAACAA-CT CCCCTTTGACTGTCATTTTCCTTTATCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCCCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGACGCGCATGA--------- >LTR7u1_chr15_93278373_93278821_EncodeRepressed_SOLO_NANOG_C_7up_phylo___chr15_9327837393278821___1448 TGTCAGGCCTCTGAGCCCAAG-----------------------TCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAGAAGA AGTGA-----AAATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGACGTGAAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCGGGCTCAAA-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGAG-------------- ---------------------------AC-CCCCACT-CCTGCCCACCTGAGAACAA-AT CCCCTTTGACTGTAATTTTCCTTTATCTCCCCA-AATCCTATAA-----------AACC- GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTGTTTTTGGACTCAGCCCGCCTGCAGCC AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACTCCGACGCGCATG---------- >LTR7u1_chr10_21751374_21751765_h3k27ac_enh_SOLO_NANOG_44108_SMAD11_C_7up_phylo___chr10_2175137421751765___1389 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC TCTGTGAC---------------------------------------------TTGGACG TATACGCCCAGG------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAATGCCCTGC-CCAGCCTTAACTGAT----------------------- ---GACATTATCT-----------T----------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ---------------------------GTGAAAGTCCTTTTCCTGG-------------- ----TTCATCCTGGCTCAAA-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCA-------------- ---------------------------AC-CCCCACT-CCAGCCCGCCAGAGAACAA--T CCCCTTTGACTGTAATTTTCCTTTACCTACCTA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTT------ATCTCCCTTCGGACTCAGCCCGCCTGCACCC AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--AGTGGGCT CTTCACACGGACGCGCAT----------- >LTR7u1_chr3_100263006_100263453_h3k4me3_weakenh_SOLO_KLF4_NANOG_C_7up_phylo___chr3_100263006100263453___1437 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCGCCTTAACTGAT----------------------- ---GACATTCTACCAGAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------T--------------C ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGGG-------------- ---------------------------AC-ACCCACT-CT-GCCCGCCAGAGAACAA-CT CCCCTTCGACTGTAATTTTCCTTTATCTACCCA-AATCCTATAA-----------AACG- GCCCCGCCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGTCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATG---------- >LTR7u1_chr3_46244372_46244820_EncodeTxn_SOLO_NANOG_C_7up_phylo___chr3_4624437246244820___1446 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC CCTGTGAC---------------------------------------------TTGCACA TATATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAATGCCCTGC-CCCGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCTGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACT-CCTGCCCGCCAGAGAACAA-GT CCCCTTTGACTGTAATTTTCCTTTATCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCT--TTTCGGACTCAGCCTGCCTGCACCC AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATG---------- >LTR7u1_chr3_16744186_16750064_4545_ZNF534_KAP1_EncodeTxn_NANOG_TCF4_GRO4of7_7up_phylo____chr3_1674418616744680____1443 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACA TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GATATTCCACCACAAAAGAAGTGAAAATGGCTGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTAAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-A-GCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACTTTGTG-------------- ---------------------------AC-CCCCACT--CTGCCCACCAGAGAACAA--C CCCCTTTGACTGTAATTTTCCTTTATTTACCCA-AATCCTATAA-----------AACG- GCCCCATCC-T-T-ATCTCCCTTCGCTGACTTT--TTTCAGACTCAGCCTGCCTGCACCC AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTTACACGGACGCGCATGA--------- >LTR7u1_chr7_125258828_125259326_h3k4me3_weakenh_SOLO_NANOG_7up_phylo____chr7_125258828125259326____1467 -GTCAGGCCTCTGAGCCTAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCATAAAAGA AGTAA-----AAATGCCCTGC-CCCGCCTTAACTGAT----------------------- ---GACATTCCACTACAAAAGAAGTGTAAATGTCCGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTTCTTTTCCTGG-------------- ----CCCATCCTGGCTTCAA-A-TCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCA-------------- ---------------------------AT-GCCCACT-CCTGCCCGGCAGAGAACAA-CC CCCCTTTGACTGTAACTTTCCTTTATCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC AGGTGA---------TTAAAAGCTTTATCGCTCACACAAAGTCTG--TTT--AGTAGTCT CTTCACACCGACAGGCATGA--------- >LTR7u1_chr3_46557050_46557496_h3k27ac_weakenh_SOLO_NANOG_7up_phylo____chr3_4655705046557496____1445 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGAATCC CCTGTGAC---------------------------------------------TTGCACG TATATGCCAAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAATGCCCTGC-CCCGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGGAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-A-ACTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACT-CCTGCCTGCCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG- GCCTCATCC-C-T-ATCTCCCTTCGCTGA--CTGTTTTCGGACTCAGCCTGCCTACACCC AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGATGCGCATGA--------- >LTR7u1_chr5_116867434_116868086_h3k27ac_enh_SOLO_NANOG_SMAD11_C_proto7y___chr5_116867434116868086___1446 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCA CCGGTGAC---------------------------------------------TTGCACG AATATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAATGCCCTGC-CCCGCCTTAACTGAT----------------------- ---GACATTCCACTACAAAAGAAGTG-AAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATA--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-A-GCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACT-CCTGCCCACCAGAGAACAA-CC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AATG- GCCCCACCT-C-T-ATCTCCCTTCGCTGAATCTCTTTTCGGACTCAGTCCACCTGCACCC AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACTGATGCGCATG---------- >LTR7u1_chr13_56109982_56110429_h3k27ac_EncodeTxn_SOLO_NANOG_7up_phylo____chr13_5610998256110429____1446 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACC TATATGCCTAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAATTCCCTGC-CCCGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GGGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-A-GCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCA-------------- ---------------------------AC-CCCCACT-CCTGCCCACCAGAGAACAA-AC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AATG- GCCCCACCC-C---ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC AGGTGA---------TTAAATGCTTTATTGCTCACACAAAGCCTG--TTT--GGTAGTCT CTTCACACGGACGCGAGTGA--------- >LTR7u1_chr6_87861862_87862361_EncodeRepressed_SOLO_NANOG_C_7up_phylo___chr6_8786186287862361___1447 TGTCAGGCCTCTGAGCCCAAA-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAATGCCCTGC-CCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCTTCCTGGCTCAAA-A-GCTCCCTCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCA-------------- ---------------------------AC-CCCCACT-CCTGCCCACCAGAGAACAA-AG CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC TGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTAGTCT CTTCACACGGACGCGCATG---------- >LTR7u1_chr9_31326307_31334697_4429_ZNF534_KAP1_k27ac_EncodeTxn_wangmod_GRO3of7_7up_phylo____chr9_3132630731326754____1447 -GTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC CCTGTGAC---------------------------------------------TTGCACA TATACACCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACCGAAGAATCACAAAAGA AGTGA-----AAATGCCCTGC-CCCGCCTTAACTGAT----------------------- ---GACATTACACCACAAAAGAAGTGAAAATGGCTGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCACAAA-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCT-------------- ---------------------------AT-CCCCACT-CCTGCCCGCCAGAGAACAA-AT CCCCTTTGACTGTAATTTTCCTTTATCTACCCA-AATCCTATAA-----------AACG- GCTCCACCC-T-T-ATCTCCCTTCCCTGACTCTCTTTTCAGATTCAGCCCGCCTGCACCC AGGTGA---------TTAAAA-CTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGAACGCGCATGA--------- >LTR7u1_chr18_42552441_42558142_2717_1_EncodeTxn_NANOG_GRO4of7_C_7up_phylo___chr18_4255769342558142___1448 TGTCAGGCCTCTGAGCCCAAG-----------------------TCAAGCCATCACATCC CCTGTGAC---------------------------------------------TTGCACG TATATACCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAATGCCCTGC-CCCGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCTGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTCCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCA-------------- ---------------------------AC-CCCCACT-CCTACCCACCCGAGAACAA-AT CCCCTTTGACTGTAATTTTCCTTTATCTACCCA-AATCCTATAA-----------AACA- TCCCCACTC-T-T-ATCTCCCTTCACTGACTCTCTTTTCAGACTCAGCCCACCTGCACCC AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGATGCAAGTG---------- >LTR7u1_chrX_89191522_89191969_EncodeTxn_SOLO_NANOG_7up_phylo____chrX_8919152289191969____1447 -GGCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACT TATAAGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAA-TGAAGAATCACAAAAGA AGTGA-----AAATGCCCTGC-CCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCAGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCGTGGCTCAGA-AAGCTCCCCAAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGGG-------------- ---------------------------AC-CTCCACT-CCTGCCCGCCAGAGAACAA-AT CCCCTTTGACTGTAATTTTCCTTTATCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTCCCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA---------TTAAAAGCTTTATTGCTCATACAAAGCCTG--TTT--GGTGGTCT CTCCACACAGACACGAGTGA--------- >LTR7u1_chr8_108309757_108310205_h3k27ac_weakenh_SOLO_KLF4_NANOG_C_7up_phylo___chr8_108309757108310205___1448 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC CCTGTGAC---------------------------------------------TTGCACG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAATGCCCTGC-CCCGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----CGGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCCGGCTCAAA-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTTCG-------------- ---------------------------AC-CCCCACT-CCTGCCCGCCAGAGAACAA-AT CCCCTTTGACTGTAATTTTCCTTTATCTACCCA-AATCCTATAA-----------TACG- GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTTGGACTCAGCCTGCCTGCACCC AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACAGGGACTCGAGTG---------- >LTR7u1_chr3_68418143_68418647_SOLO_NANOG_C_7up_phylo___chr3_6841814368418647___1467 TGTCAGGCCTCTGAGCCCAAG-----------------------CCAAGCCATCACATCC CCTGTGAC---------------------------------------------TTGCACG TACACACCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----ATATGCCCTGC-TCCGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGTAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGACGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACT-C-TGCCCACCAGAGAACAA-CT CCCCTTTGACTGTAATTTTCCTTTTTCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTTGCTGACTATCTTTTGGGACTCGGCCCACCTGCACCC AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTAT CTTCACACGGATGCGCATG---------- >LTR7u1_chr11_121637351_121643560_3134_ZNF534_k4me3_weakenh_KLF4_NANOG_GRO1of7_C_proto7y___chr11_121643110121643560___1450 TGTCAGGCCTCCGAGCTCAAG-----------------------CTAAGCCATCGCATCC CCAATGAC---------------------------------------------TTGCACA TATACACCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAATGCCCTGC-CCCGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCAGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTAAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCC-------------- ---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAA-CC CCCCTTTGACTGTAATTTTCCTTTATCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTCACTGACTCTCTTTTTGCACTCAGCCCAACTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGACGTGAGTG---------- >LTR7u1_chr12_106141882_106142344_weakenh_SOLO_NANOG_C_7up_phylo___chr12_106141882106142344___1448 TGTCAGGCCTCTGTGCCCAAG-----------------------CCAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCAGAAAAGA AGTGA-----AAATGCCCTGC-CCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCGGCCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTCACG-------------- ---------------------------AC-CCCCACCCC-TGCCCGCCAGAGAACAA-CC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGACGCACATG---------- >LTR7u1_chrY_15510075_15510519_SOLO_NANOG_SMAD11_TCF4_C_7up_phylo___chrY_1551007515510519___1444 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAT---------------------------------------------TTGCATG TATATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAATACCCTCC-CCAAGCTTAACGGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAACATGGCCGGTTCT------------------- ------------TG------------------TC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--ATGAAAGTCATTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AATCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCCCCAGAGAACAA--- CCCCTTTGACTGTAATTTTTCTTTACCTACCCA-AATCCAATAA-----------AACT- GCCCTACCC-C-T-ATCTCCCATCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA---------TTAAAA--TTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACACACATG---------- >LTR7u1_chr18_51470189_51470638_EncodeTxn_SOLO_NANOG_C_7up_phylo___chr18_5147018951470638___1444 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCGCATCC CCTGTGAC---------------------------------------------TTGCACG TATATGACCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTAA-----AAATACCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCGGTCCT------------------- ------------TG------------------TC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAA----CACCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA--- CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACT- GCCCCACCC-C---ATCTCCCTTCGCTGACTCTCTTTTCAGACTCAGCCCACCTGCCCCC AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT -TTCACACGTATGCACATG---------- >LTR7u1_chr21_17121441_17127757_4390_ZNF534_ZNF90_KAP1_EncodeRepressed_NANOG_7up_phylo____chr21_1712144117121891____1448 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCGCATCC CAGGTGAC---------------------------------------------TTGCATA TATATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GATATGCCACCACAAAAGAAGTGAAAATGGCTGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTAAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTCCA-------------- ---------------------------AC-CCCCACTCC-TGCCCATCAGAGAACAA-CC CCCTGTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AATG- GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTTGGACTCAGCCTGCCTGCACCC AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGCACATGA--------- >LTR7u1_chr13_80183511_80189979_2780_ZNF534_ZNF90_KAP1_k27ac_EncodeTxn_NANOG_7up_phylo____chr13_8018351180183959____1448 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCTCATCC CTGGGGAC---------------------------------------------TTGCACA TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAATGCCCTGC-CCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTAAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCTCTCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CATCTTGCG-------------- ---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAA-CC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACA- GCCCCACTC-C-T-ATCTCCCTTCACTGACTCTCTTTTCAGACTCAGCCTGCCTGCACTC AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTAACACGGACGCACGTGA--------- >LTR7u1_chr5_77491011_77491450_h3k4me3_TSS_SOLO_7up_phylo____chr5_7749101177491450____1438 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCGCATCC CCGGTGAC---------------------------------------------TTGCACA TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAATAACTGAAGAATCACAAAAGA AGTGA-----AAATGCCCTGC-CCCGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAG---TGAAAATGGCCGGTCCT------------------- ------------CG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTAAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCTCCC---C--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTG---------------- ------------------------------CCCCACTCC-TGCCCGCCAGAGAACAA-CT CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATGA--------- >LTR7u1_chrX_109178345_109184158_4538_ZNF534_KAP1_EncodeTxn_7up_phylo____chrX_109178345109178792____1447 -GTCAGGTCTCTGAGCCCAAG-----------------------CTAAGCCATCACATCC CCTGTGAC---------------------------------------------TAGCACA TATACGCTCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAA-AGA AGTGA-----AAATGCCCTGC-CCCACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTAAGAGTCCTTTTCCTGG-------------- ----CTCATCCTAGCTCAAA-AATCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCCTGCG-------------- ---------------------------AC-CCCCACTCC-TACCCGCCAAAGAACAA-CC CCCCTTTGACTGTAATTGTCCTTTACCTACCCA-AATCCTATAA-----------AACA- GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA---------TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATGA--------- >LTR7u1_chr1_229412418229418665_3302_ZNF534_GRO2of7__chr1_229412418229412815____1394 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCGCAGCC CCGGTGAC---------------------------------------------TTGCACA TATATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAATG--------------------------------------------- --------------------------------GCCGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTAAAAGTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTATG-------------- ---------------------------AC-CCCCACTCC-TGCCAGCCAGAGAACAA-CC CCCCTTTGACTGTAATTTTCCTTTACCTGCCCA-AATCCTATAA-----------AACT- GCCCCACCC-T-T-AACTCCCTTCG----CTTTCTTTTCGGACTCAGCCCACCTGCACTC AGGTGA---------TAAACAGCTTTATTGCTCACACAAAACCTG--TTT--GGTGGTCT CTTCACATGGACGCGCATGA--------- >LTR7d1_chr7_120009179_120014835_2887_1_EncodeTxn_7int____chr7_120009179120009629____1449 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCGCATCC CCTGTGAC---------------------------------------------CTGCATG TATACACCCAAT------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCATGAAAGA ATTGA-----AAATGGCCTGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTAAAATTCCTTTTCCTGG-------------- ----CTCATCCTGGCTGAAA-AACCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCCTGTG-------------- ---------------------------AC-CGCCACCCC-TGCCAGCCAGAGAACAA--- CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AATG- GCCCCACCC-C-T-ATCTCCCTGTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGATGTGCATGA--------- >LTR7d1_chr20_172772178853_2990_1_EncodeTxn_GRO2of7__chr20_172772173223____1451 -GTCAGGCCTCTGAGCCGAAG-----------------------CTAAGCCATCACATCC CTTGTGAC---------------------------------------------CTGCACC TATACGCCTACA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAATGGCCTGTTCTTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCTGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATCCCTTTTCCTGG-------------- ----CTCATCTTGGCTCAAA-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAA-CT CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG- GCCCCACCT-C-T-ATCTCCCTTCACTGACTCTGTTTTCGGACTCAGCCTGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGAGTGA--------- >LTR7d1_chr2_184198784_184199229_h3k27ac_EncodeTxn_SOLO_7int____chr2_184198784184199229____1444 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATTGCATCC CCTGTGAC---------------------------------------------CTGAACA TATAGGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAATGGCCTGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAGTTCCTTCTCCTGG-------------- ----CTCATCCT-GCTCAAA-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-TCCCACTCC-TGCCCGCCAGAGAACAA-CT CCCCTTTGACTGTAATTTTCCTTTACCTAACCA-AATCTTATAA-----------AATG- GTCCCACCT-C-T-ATCTCCCTTCGCTGACTCT--TTTCGGACTCAGCCCGCCTGCCCCT AGGTGA-----AA--TAAATAGCCTTGTTGCT----CAAAGTCTG--TTT--GGTGGTCT CTTCACACGGACGCGAGTGA--------- >LTR7d1_chr10_27465310_27470937_3794_1_k4me3_weakenh_7int____chr10_2746531027465760____1450 -GTCAGTCCTCTGAGCCTAAG-----------------------CTAAGCCATAGCATCT CCTGTGAC---------------------------------------------CTGCACT TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAATGGCCTGTTCCTGCCTTAACTGAT----------------------- ---AACATTCCACCACAAAAGAAGTGAAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTAAAATTCCTTTTCCTGT-------------- ----CTCATCCTGGCTCAAA-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCTACCCC-TGCCAGCCAGAGAACAA-C- CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACA- GCCCCACCC-C-T-ATCTCCCGTCATTGACTCTCTTTTCTGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGTGCATGA--------- >LTR7d1_chr11_81769942_81770404_h3k27ac_EncodeTxn_SOLO_7old____chr11_8176994281770404____1449 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATTGCATC- CCTGTGAC---------------------------------------------CTGCACC TATACGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAATGGCCCGTTCCTGCCTTAACTGAT----------------------- ---GACGTTCCACCACAAAAGAAGCGAAAATGGCCAGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------AAC--------TT--GTGAAATTCCTTTTCCTGG-------------- ----CTTATCTTGGCTCAAA-AATCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCACCAAAGAACAA-CC CCCCTTTGACTGTAATTTTCCTTTACCTACCTA-AATCTTATAA-----------AACG- ACCCCACCC-C-T-ATCTCCCTTAGCTGACTCTCTTTGTGGACTCAGCCTGCCTGCACCC AGGTGA-----T---TAAAAAGATTTATTGCTCACCCAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGTGAGTGA--------- >LTR7d1_chr8_57390769_57391200_EncodeTxn_SOLO_7old____chr8_5739076957391200____1428 -GTCAGGCTTCTGAGCCCAGG-----------------------CTAAGCCATTGTATCA CCTGTGAC---------------------------------------------ATGCACG TATATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAATTGAAGAATC-CAAAAGA AGTGA-----AAATGGCCTGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAAGGGCTGGTCCT------------------- ------------TG------------------CC----------TTAA----CCGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------TCC-TGCCCTCCAGAGAACAA-CC CCCCTTTGACTCTAATTTTCCTTTACCTACACA-AATCTTATAA-----------AACA- GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTCCGACTCAGCCCGCCTGCACCA AGGTGA-----T---TAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGTGAGTGA--------- >LTR7d1_chr1_244350717_244351134_h3k27ac_weakenh_SOLO_7old____chr1_244350717244351134____1411 ------------------------------------------------------------ ---GTGAC---------------------------------------------CTGCACG TATATATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAGAGGA AGTGA-----AAATGGCCTGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACTACAAAAGAAGTGAAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----CCGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTCCTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------G---------GAG----CACCTTGTC-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-CC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG- GCCTCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGACGGCCTGCACCC AGCTGA-----T---TAAAAAGCTTTATCGCTCACACAAAGCCTG--TTT--GGTTGTCT CTTCACACGAACGCGAGTGA--------- >LTR7d1_chr6_130795837_130796283_weakenh_SOLO_NANOG_C_7int___chr6_130795837130796283___1446 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCAGG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGATATTTAAATGGCCTGCTCCTGCCTTAACTGAT----------------------- ---CACATTCCACCACAAAAGAAGTGAAAGTGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAAA-AATCTCCCCCGT--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAA----CACCTTGTG-------------- ---------------------------AC-CCCGACTCC-TGCCCGCCAGAGAACAA-CC CCCCTTT----------TTCCTTTACCTACCCA-AATCTTATTA-----------AACG- GCCCCACCC-C-T-ATCTTCCTTCACTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGCTGCTCACACAAAGCTTG--TTT--GGTGGTCT CTTCACAGGGACGCGAGTG---------- >LTR7d1_chr20_23528306_23528753_h3k27ac_enh_SOLO_C_7int___chr20_2352830623528753___1447 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATGC CCTGTGAC---------------------------------------------CTGCAGG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGATATTTAAATGGCCTGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCAGTCCT------------------- ------------TG------------------CC----------TTAA----CTGAA--- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ -----------------------TT--GTGAAATTCCTTTTCCTGG-------------- ----CTCACCCTAGCTCAAA-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCATTCC-TGCCTGCCAGAGAACAA-CA CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AATG- GCCCCACCC-C-T-ATCTCCCTTTACTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGCCT CTTCACACGGACGTGAGTG---------- >LTR7d1_chr1_54906872_54907325_h3k27ac_EncodeTxn_SOLO_chimeric_C_7int___chr1_5490687254907325___1451 TGTCAGGCCTCTGAGCCCAGG-----------------------CTAAGCCATCGCATCC CCTGTGAC---------------------------------------------CTGCACG TATATGCCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCAGAAAAGA AATGA-----AAATGGCCTGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCATAAAAGAAGTGCAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ACT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CATCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-CC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCTCATAA-----------AATG- GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC AGGTGA-----AA--TAAACAGACTTGCTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGATGCGAGTG---------- >LTR7d1_chr21_42800847_42806578_2990_ZNF534_k4me3_weakenh_NANOG_C_7int___chr21_4280613242806578___1446 TGTCAGGCTTCTGAGCCCAAG-----------------------CTAAGCCATCATATAC CCTGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGATATTTAAATTGCCTGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCAGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCTCCCCCAT--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAATAA-CC CCCCTTC----------TTCCTTTACCTACCCA-AATCTTATAA-----------AATG- GCCCCACCC-C-T-ATCTCCCTTGGCTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTCCTCATACAAAGCCTG--TTT--GGTGGACT CTTCACACAGATGCGAGTG---------- >LTR7d1_chr11_63452639_63454201_1085_ZNF534_k27ac_EncodeRepressed_7int____chr11_6345263963453089____1450 -GTCAGGCCTCTGAGACTAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTACATG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGATATTTAAATGGCCTGTTCCTGCCTTAACTGAT----------------------- ---GACATTCAACTGCAAAAGAAGTGCAAATGGCCAGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------AGC--------TT--CTGAAATTCCTTCT---GG-------------- ----CTCATCCTGGCTCAAA-AAGCTCCCTGAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGTCTGCCAGAGAA----CC CCCCTTTGACTTTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACA- GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCAGACTCAGCCTGCCTGCACCC AGGTGA-----AA--TAAACAGCCTCATTGTTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGAAGCGAGTGA--------- >LTR7d1_chr11_83430603_83436575_2643_1_EncodeTxn_C_7int___chr11_8343612083436575___1453 --TCAGGCCTCTAAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACC TATACATCCAGA------------------------------------------------ -----------------------------TGGCCAGAAGTAACTGAAGAATCACAAAAGG AGTGAATTTTAAATGGCCTGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCAGTCCT------------------- ------------TG------------------CC----------TTAA----CTAATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--CTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCCTG-G-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACCC-CC CTCCTTTGACTGTAATTTTCCTTTACATACCTA-AATCTTATAA-----------AACG- GCCCGACCC-C-T-ATCTCCCTTCACTGAATCTCTTTTCAGACTCAGCCTGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGCGAGTG---------- >LTR7d1_chr1_21554968_21555417_EncodeTxn_SOLO_NANOG_C_7int___chr1_2155496821555417___1448 TGTCAGGCGTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACA TATACATCCAGA------------------------------------------------ -----------------------------CGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGAAATTTAAATGGTCTGTTCCTACCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGACGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAA----CC CCCCTTTGACTGTAATTTTCCTTTACCTACCCC-TATCTTATAA-----------AACG- GCCCCACCC-A-T-ATCTCCCTTGGCTGACTCTCTTTTTGGACTTAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACTCAAAGCCTG--TTT--GGTGGTCT CTTCACTCGGATGC--------------- >LTR7d1_chr7_20120709_20126555_2964_ZNF534_k4me3_TSS_MED1_NANOG_44108_SMAD11_SOX2_wanghigh_GRO1of7_7int____chr7_2012070920121160____1445 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------TTGCATG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATAACAAAAGA AGTGA-----AAATGGCCTGTTCCTGCCTTAACTAAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCGGTGCT------------------- ------------TG------------------CC----------TTAA----ATGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC--CACACTCC-TGCCCTCCAGAGAACAA-CC CCCCTTTGCCTGTAATTTTCCTTTACCTACCGA-AATCTTACAA-----------AATG- GCCCCACCC-C-T-GTCTCCCTTCGCTGACTCTCTTTGCGGACTCAGCCAGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--AATGGTCT CTTCACACTGGCGCG-------------- >LTR7d1_chr4_174519435_174519881_h3k27ac_EncodeTxn_SOLO_7int____chr4_174519435174519881____1446 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATTATATCC CCTGTGAC---------------------------------------------CTGCACA TATACATCCACA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGT AGTGATACTTAAATGGCCTGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCATCTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCTCCACCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTGC-TGCCCACCAGCGGGCAA-CC CCCCTT----------TTTCCTTTACCTACCCA-AATCTTATAA-----------AATA- GCCCCACCC-C-T-ATTTCCCTTTGCTGACTCTCTTTTCCGACTCAGCCAGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGACGCGAGTGA--------- >LTR7d1_chr18_35844062_35850418_2579_ZNF534_KAP1_EncodeRepressed_GRO1of7_7int____chr18_3584406235844501____1439 --------CGCTGAGCCCAAG-----------------------CTAAGCTATCATATCC CCTGTGAC---------------------------------------------CTGCACA TATACATCCGGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGTAGAATCACAAAAGA AGTGAAATTTAAATGGCCTGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTAAAAATGGCTGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCTCTCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCTCACCAGAGAACAA-CC CCCCTTT----------TTCTTTTACCTACCGA-AATCTTATAA-----------AACG- GCCCCACCC-T-T-GTCTCCCTTAGCTGACTCTCTTTTTGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGATCT CTTCACAGGGACGCAAGTGA--------- >LTR7d1_chr3_162712460_162718258_2750_ZNF534_k4me3_EncodeTxn_GRO3of7_7int____chr3_162712460162712907____1445 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTAAAGTAACTGAAGAATCACAAAAGA AGTGATATTTAAATGGCCTTTTCCTGCCTTCACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCTGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACT--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCTCTCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACGTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAA-CC CCCCTTT----------TTCCTTTACCTACCCA-AATCTTATAA-----------AACA- GCACCACCC-C-T-ATCTCCCTTCGCTGACTTTCTTTTCG-ACTCAGCCCATCTGCACCC AGGTGA-----AA--TAAACAGACCTGTTACTCACACAAAGCCAG--TTT--CGTGGTCT TTTGTGAGGGACGCGAGTGA--------- >LTR7d1_chr1_116860171_116860634_h3k27ac_EncodeRepressed_SOLO_C_7int___chr1_116860171116860634___1450 TGTCAGGCCTCTGAGCCTAAC-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACC TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGATATTTAAATGGCCTGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCTGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTC------------------ ----CTCATCCTGGCTCAAA-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCAACTCC-TGCCCACCAGAGAACAA-GC CCCTTTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG- ACCCCACCT-C-T-ATCTCCCTTTGCTGACTC--TTTTCAGACTCATCCCTCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTA--TTT--GGTGGTCT CTTCACATGGACACGAGTG---------- >LTR7d1_chr4_103941268103947029_2996_ZNF534_EncodeRepressed_GRO2of7__chr4_103941268103941716____1448 -GTCAGGCCTCTGAGTCCAAG-----------------------CTAAGCCATCTCATCC CCTGTGAC---------------------------------------------CTGCACG TATACATTCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGATATTTAAATGGTCTGTTCCTGCCTTAACTGAT----------------------- ---GACATTCTACCACAAAAGAAGTGAAAATGGCTGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCTTTCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-TCCTAGTCC-TGCCCACCAGAGAA-AA-AC CCCCTTTGACTCTAATTTTCCTTTACCTACCCA-AATCCTGTAA-----------AATG- GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTCAGACTCAGTCCGCCTGCCCCC AAGTGA-----AA--TAAACAGCCTTGTTGCTCACAC-AAGCCTG--TTT--GGTGGTCT CTTCCCAAGGACAC--------------- >LTR7d1_chr21_26081260_26081656_h3k27ac_enh_SOLO_NANOG_44108_SMAD11_SOX2_TCF4_C_7int___chr21_2608126026081656___1396 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAACC-----ATCC CCTGTGAC---------------------------------------------CTGCACG TATTCGCCCAGA------------------------------------------------ -----------------------------TGGCCCGAAGCAAGTGAAGAATCACAAAAGA AGTGA-----AAATGGCCTGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTTCTGG-------------- ----CTCATCCTGGCTC-AA-AAACTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCCTGTG-------------- ---------------------------AC-CCCCACCCC-TGCCCCCCAGAGAACAA--C CCCCTTTGACTGCAATTTTCCTTTACCTACCCG-AATCTTACAA-----------AATG- GCCCTACCC-C---ATCTCCCTTTCCTGACTCT-TTTTCGGACTCAGCCTGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTT------------------------------- ----------------------------- >LTR7bc_chr21_41244264_41244723_EncodeTxn_SOLO_C_7int___chr21_4124426441244723___1446 TGTCAGGCCTCTGAGCCCAAG-----------------------CTATGCCATTGTATCC CCTGTGAC---------------------------------------------CTGCACC TATACGTCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAAGTGAAGAATCACAAAAGA AGTGA-----AAATGGCCGGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCAGTCCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTC---TGG-------------- ----CTCATCCTGGCTC-AA-AGGCTCTCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACCCT-GGCCAGCCAGAGAACAA--C CCCCTTTGATTGTAATTTTCCACTACCTACCCA-AATCTTATAA-----------AGTG- GACCCACCC-C-T-GTCTCCCTTCACTGACTCTCTTTTCAGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAA-AACCTTGTTGCTCAAACAAAGCCTG--TTT--TGTGGTCT CCTTACATGGACGCGCGTGA--------- >LTR7bc_chr2_106015415_106015866_h3k27ac_EncodeRepressed_SOLO_7int____chr2_106015415106015866____1448 -GTCAGGTCTCTGAGCCCAAG-----------------------TTAAGCCATTGTATCC CCTAGGAC---------------------------------------------ATGCACA TATACGTCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGCAAATGAAGAATCACAAAACA AGTGA-----AAATGGCCTGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCCCAAAAGAAGTGAAAATGGCTGGTCCC------------------- ------------TG------------------CC----------TTAA----CTGATGAT ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTC-AA-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTA-------------- ---------------------------AC-CCCCAACCC-TGCCCGCCAGGGAACAA--A CCCCTTTGACTGTAATTTTCCTCTACCTACCCA-AATCTTATAA-----------GATG- GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTCAGGCTCAGCCCACATGCACCC AGGTGA-----AA--TAAA-AGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT TTTCACATGGATGCGTGTGA--------- >LTR7d1_chrX_121343896_121348628_2933_ZNF534_EncodeTxn_GRO5of7_GRO6of7_GRO7of7_C_7down___chrX_121348268121348628___1359 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCT CCTGTGAC---------------------------------------------CAGGACG TACACATCCAG------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ -----------------------------ATGGCCGGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAAA-A-GCTCCCCGAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAA-CC CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCGCACGGACGTGAGTG---------- >LTR7d1_chrX_116332006_116336841_2410_1_k27ac_EncodeRepressed_GRO7of7_7down____chrX_116332006116332395____1387 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCC---ATATCC TCTGTGAC---------------------------------------------CTGCACA GATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGGAACTGAAG------------ ------------------------------------------------------------ ----------CATGATAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-A-GCTACCCGAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACCCC-TGCCCGCT-GAGAGCAA-CC CCC-TTTGACTGCAATTTTCCTTTACCTACCCA-AATCTTATAA-----------GACG- GCCCCACCC-C-T-ATCGCCCTTTGCTGACTCTCTCTTCAGGCTCAGCCCACCTGCACCC AAGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACG---------------- >LTR7d1_chr13_48594936_48595388_enh_SOLO_7int____chr13_4859493648595388____1451 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCACATCC CCTGTGAC---------------------------------------------CTGCACG TATATGCCCGGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGA-----AAATGGCCTGTTCCTGACTTAACTGAT----------------------- ---GACATTCCACCGCAAAAGAAATGAAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCTCCCTCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-CC CTTCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG- GCCCCACCC-T-T-ATCTCCCTTCGCTGACTCTCTTTTCAGACTCAGACCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTTCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGATGCGAGTGA--------- >LTR7d1_chr7_32832561_32838271_2846_ZNF534_KAP1_EncodeRepressed_GRO3of7_7int____chr7_3283256132833012____1450 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCACATCC CCTGTGAC---------------------------------------------CTGCACT TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGATACTTAAATGGCCTGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-GGCCTGCCAGAGAACAA-CC CCCCTTTGACTGTAATTTTCCTTTACCTACCAA-AATCTTAGAA-----------AATG- GCCCCACCC---C-ATCTCCCTTTGCTGACTCTCTTTTCAGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGATGCG-------------- >LTR7d1_chr15_86986803_86987258_h3k27ac_EncodeRepressed_SOLO_NANOG_44108_C_7int___chr15_8698680386987258___1448 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACC TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGGGATATTTAAATGGTCTGTTCCTGCCTTCACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCTCCCCAAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCTGAGAACAA-CC CCCCTTTGACTGTAATTTTCCTTTACCTACCTA-AATCCTATAA-----------AACG- ACCCCACCC-A-T-ATCTCCTTTGGCTGACTCTCTTTTCAGACTCAGCCCGCCTGAACCC AGGTGA-----AA--TAAACAGCCTTG---CTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGC--------------- >LTR7d1_chrX_116105682_116106136_EncodeRepressed_SOLO_NANOG_7int____chrX_116105682116106136____1454 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------TTGCATG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGATATTTAAATGGCCTGTTTCTGCCTTAACTGAT----------------------- ---GACATTCTACCACAAAAGAAGTGAAAATGGCCAGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAA-CC CCCCTTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCACTGACTCT--TTTCAGACTCAGCCCGCCTACACCC AGGTGA-----AA--TAAACAGCCCTGTTGCTCACACAAAGCCTG--TTT--GGTGTTCT CTTCACACAGACGTGAGTGA--------- >LTR7d1_chr11_4219299_4225317_1668_ZNF534_EncodeRepressed_GRO5of7_GRO6of7_GRO7of7_C_7int___chr11_42248724225317___1439 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCATG TATACATCCAGA------------------------------------------------ -----------------------------GGGCCTGAAGCAACTGAAGAATCACAAAAGA AGTGA-----AAATGGCCTGTTCCTGCCTTAACTGAG----------------------- ---GACATTCCACCACAAAAGAAAACAAAATGGCCTGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACT--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAAA-AA-CTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAA-CC CCCTTTT-----------TCCTTTACCTACCCA-AATCTTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCGCTGACACTCTTTTCGGACTCAGCCTGCCTGCACCC AGGTGA-----AA--TAACCAGCCTTGTTGCTCACGCAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGTGAATG---------- >LTR7d1_chr11_4315702_4321901_1692_ZNF534_EncodeRepressed_GRO5of7_GRO6of7_GRO7of7_C_7int___chr11_43214564321901___1439 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCATG TATACATCCAGA------------------------------------------------ -----------------------------GGGCCTGAAGCAACTGAAGAATCACAAAAGA AGTGA-----AAATGGCCTCTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAAACAAAATGGCCTGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACT--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAAA-AA-CTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAA-CC CCCTTTT-----------TCCTTTACCTACCCA-AATCTTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTCGCTGACACTCTTTTCGGACTCAGCCTGCCTGCACCC AGGTGA-----AA--TAACCAGCCTTGTTGCTCACGCAAAGCCTG--TTT--GGTGGTCT CTTCACACAGACGTGAATG---------- >LTR7d1_chr11_4250610_4251055_EncodeRepressed_SOLO_7int____chr11_42506104251055____1439 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCATG AATACATCCAGA------------------------------------------------ -----------------------------GGGCCTGAAGCAACTGAAGAATCACAAAAGA AGTGA-----AAATGGCCTGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAAAGAAAATGGCCTGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACT--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAAA-AA-CTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CAACTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCACCAGAGAAGAA-CC CCCTTTT-----------TCCTTTACCTACCCA-AATCTTATAA-----------AACG- GCCAGACCC-C-T-ATCTCCCTTTGCTGACACTCTTTTCGGACTCAGCCTGCCTGCACCC AGGTGA-----AA--TAACCAGCCTTGTTGCTCACGCAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGCGAGTGA--------- >LTR7d1_chr2_208907908_208908369_EncodeRepressed_SOLO_7int____chr2_208907908208908369____1456 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACA TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAATA AGTGATATTTAAATGGCCTGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCAGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGC-------------- ----CTCATCCTGGCTCAAA-AAGCTTCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTAC-TGCTCACCAGAGAACAA-CC CCCCTTT-----------TCCTTTACCTACCCA-AATCTTATAA-----------AACG- GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCTCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CCTCACATGGACACAAGTGA--------- >LTR7d1_chr12_29134620_29140801_2944_ZNF534_EncodeTxn_C_7int___chr12_2914036029140801___1441 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCAGAAAAGA AGTAATATTTAAATGGCCTGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCTGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCCTAAA-AAGCTCCCTGAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACTTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAA-CC CCCTTTT-----------TCCTTTACCTACCCA-AATCTTATAA-----------AACA- GCCCCACCC-C-T-ATCTCCCTTTGCTGACTCTCTTTTTGGACTCAGCCTGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGATGC--------------- >LTR7d1_chr17_65158898_65159347_EncodeTxn_SOLO_7int____chr17_6515889865159347____1447 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGGC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAATAACTGAAGAATCACAAAAGA AGTGATATTTACATGGCCTGTTCCTGACTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCAGTCCT------------------- ------------TG------------------CC----------TTAA----CTGAGGGC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-CC CCCTTTT-----------TCCTTTACCTACCCA-AATCTTATAA-----------AACA- GCCCCACCC-C-T-ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACGAAGCCTG--TTT--GGTGGTCT CTTCACACGGACACGAGTGA--------- >LTR7d1_chr5_23381160_23381619_EncodeTxn_SOLO_7int____chr5_2338116023381619____1455 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGATATTTAAATGGCCTGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGTCGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GAGAAATTCATTTTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAACTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-CC CCCTTTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG- GCCCCACCC-C---ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGATGCGAGTGA--------- >LTR7d1_chr21_17087734_17088180_EncodeRepressed_SOLO_7int____chr21_1708773417088180____1446 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCAGG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAACA AGTGATATTTAAATGGCCTGTTCATGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCCGGCTCAAA-A-GCTCCCCAAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACCCC-TGCCCGCCAGAGAACAA-CC CCC-TTTGACTGTAATTTTCCTTTACCTCCCCA-AA-CTTATAA-----------GACG- GCCCCACCC-T-T-GTCTCCCTTTGCTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGC--------------- >LTR7d1_chr6_51938241_51944426_2534_ZNF534_KAP1_EncodeTxn_7int____chr6_5193824151938681____1439 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TATACATCCAGA------------------------------------------------ -----------------------------TGGCCTGAAGTAACTGAAGAATCACAAAAGA AGTGATATTTAAATGGCCTGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCTGGTCCT------------------- ------------TG------------------CC----------T-AA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TG--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAAA-AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACGCTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-CC CCC-CT---------TTTTCCTTTACCTCCCCA-AATCTTATAA-----------GATG- GCCCCACTA-C-T-ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTGA-----AA--TAAACAGCCTTGTTGCTCATACAAAACCTG--TTT--GGTGGTCT CTTCACACAGACGC--------------- >LTR7d1_chr5_116822250_116822654_h3k27ac_enh_SOLO_KLF4_MED1_NANOG_7down____chr5_116822250116822654____1403 -GTCAGGCCTCTGAGCCCAAC-----------------------ATAAGCCATCATATCC CCTGTGAC---------------------------------------------CCACATG TATACATCCAGA------------------------------------------------ -----------------------------TGGCC-------------------------- ------------------TGTTCCTGCCTTAACTGAT----------------------- ---GACATTACACCACAAAAGAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTTG-------------- ----CTCAGCCTGGCTCAA--AAGCTCCCCCCC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACGCC-TGCCCGCCAGAGAACAA-CC CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCAGATAA-----------AACA- GCCCCACCC-C-T-ATCTCCCTTCACTGACTCCCTTTTCGGACTCAGCCCGCCTGCACCC AGGTGA-----AA--TAAAGAGCCTCATTGCTCACTCAAAGCCTG--TTT--GATGGTCT CTTCACACGGACG---------------- >LTR7d1_chr3_58440917_58441370_h3k27ac_EncodeRepressed_SOLO_C_7old___chr3_5844091758441370___1447 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TATACATCCAGATGGC------------------------------------CTGAAGTA ACT--GAAGAATCACAAAAGAAGTGAAAATGGCC-------------------------- ------------------TGTTCCTGCTTTAACTGAT----------------------- ---GCCATTCCACCACAAAATAAGTGAAAATGGTCGGTCCT------------------- ------------TG------------------CC----------TTAA----GTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAACTCTCCCGC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CAACTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAA-CC CCC-TTTGACTATAACTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG- GCCCCACCC-C---ATCTCCCTTCGTTGACTGTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTG-------A--TTAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGACGCGCATG---------- >LTR7d1_chr2_116190543_116190949_EncodeRepressed_SOLO_C_7down___chr2_116190543116190949___1406 TGTCAGGCCTCTGAGCCAAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TACACATCCAGATGGC------------------------------------CTG----- ------------------------------------------------------------ --------------------CTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAATAAGTGAAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATAAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCAAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCTACCCC-TGCCAGCCAGAGAAC---CC CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AATG- GCCCCACCC-C---ATCTCCCTTCCCTGACTCTCTTTTCAGACTCAGCCCACCTGCACCC AGGAG-------A-TTAAAAAGCTTTATTGCTCACAAAAAGCCTG--TTT--GGTGGTCT CTTCACACAGACACGAGTG---------- >LTR7d1_chr4_86474771_86480520_3025_ZNF534_k4me3_EncodeTxn_NANOG_chimeric_7old____chr4_8647477186475220____1441 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACA TATACATCCAGATGGC------------------------------------CTGAAATA ACT--GAAGAATCACAAAAGAAGTGAAAATGGCC-------------------------- ------------------TGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----ATGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCGAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCTGCCAGAGAACAA-CC CCC-TTTGACTGTAATTTTCCTTTAGCTACCCA-AATCTTATAA-----------AACG- GCCCCACTC-C---ATCTCTCTTCACTGACTCTCTTTTCAGACTCAGCCCACCTGCACCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGTCTG--TTT--GGTGGTCT CTTCACACAGACAC--------------- >LTR7Y_chr2_2ltr_int_fr_865__chr2_6041743560417833_+_ -GTCAGGCCTCTGAGCCCAAC-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCATG TATACATCCAGATGGC------------------------------------CTGAAGTA ACT--GAAGAATCACAAAAGAAGTGAAAATGACT-------------------------- ------------------TGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCCGCCAGAGAACAA-CC CCC-TTTGACTGTAATTTTCCATCACCTTCCCA-AATCCTATAA-----------AATG- GCCCCACCC-C--TATCTCCCTTCACTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC AGGTG-------A-ATAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACAGGGACATGCATG---------- >LTR7d1_chrX_103429055_103435438_2990_ZNF534_k4me3_EncodeTxn_SMAD11_C_7old___chrX_103435040103435438___1397 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACA TATACATCCAGATGGC------------------------------------CTGAAGTA ACT--GAAGAATCACAAAAGAAGTGAAAATGGCC-------------------------- ------------------TGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-CACCCGCCAGAGAACAA-CC CCC-TTTGACTGTAATTTTCCTTTACCTACCTA-AATCCTATAA-----------AATG- GCCCCACCC-C--TATCTCCCTTCACTGACTCTCTTTTCAGACTCAGCCCCCCTGCACCC AGGTG-------A-ATAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGATGCGCATG---------- >LTR7d1_chr6_29296434_29296883_EncodeTxn_SOLO_NANOG_7old____chr6_2929643429296883____1448 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCGCATCC CCTGTGAC---------------------------------------------CTGCATG TATATGCCCAGATGGC------------------------------------CTGAAGTA ACT--GAAGAATCACAAAATAAGTGAAAATGGCC-------------------------- ------------------TGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTTTCCTGG-------------- ----CTCATCCTGGCTCAA--AACCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCTAGAGAACAA-CC CCC-TTTGAC--TAATTTTCCTTTACCTACCCA-AATCTTATAA-----------TATG- GCCCCACCC-C--TATCTCCCTTAGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGATCT CTTCACACGGACGCAGGTG-----A---- >LTR7d1_chr12_132898049_132898499_h3k27ac_EncodeTxn_SOLO_7old____chr12_132898049132898499____1448 -GTCAGGCCTCTGGGCCCAAG-----------------------CTAAGCCATCACATCC CCTGTGAC---------------------------------------------CTGCATG TATATGCCCAGATGAC------------------------------------CTGAAGTA ACT--GAAGAATCACAAAAGAAGTGAAAATGGCC-------------------------- ------------------TGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACTACAAAAGAAGTGAAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCTCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCTACCCC-TGCCCGCCAGAGAACAA-CC CCC-TTTGACTGTAATTTTCCTTTACCTACTTA-AATCTTATAA-----------AACG- GCCCCACCC-C---ATCTCCCTTTGCTGACCCTCTTTTCAGACTCAGCCCGCCTGCACCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGAGTG-----A---- >LTR7d1_chr12_66222841_66223297_EncodeTxn_SOLO_C_7old___chr12_6622284166223297___1450 TGTCAGGCCTCTGAGCCCAAG-----------------------TTAAGCTATTGCATCC CCTGTGAC---------------------------------------------CTGCATG TATACATCCAGATGGC------------------------------------CTGAAGTA ACT--GAAGAATCACAAAAGAAGTGAAAATGGCA-------------------------- ------------------TGTTCCTGCCTTAACTGAT----------------------- ---GATATTCCACCACAAAAGAAGTGAAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCCACAGAGAACAA-CC CCC-TTTGACTGTAATTTTCCTTTACCTACTCA-AATCCTATAA-----------AACG- GCTCCACCC-C--TATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TGT--GGTGGTCT CTTCACACAGACGCGAGTG---------- >LTR7d1_chrX_33103275_33103716_EncodeRepressed_SOLO_NANOG_7old____chrX_3310327533103716____1441 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCATG TATACGCCCAGATGGC------------------------------------CTGAAGTA ACT--GAAGAATCACAAAAGAAGTGAAAATGGCC-------------------------- ------------------TGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGGAAATGGCCTGTTCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCACCAGAGAACAA-CC CCC-TTTG----TAATTTTCCTTTACCTACCGA-AAGCTTATAA-----------AACG- GCCCCACCC-C--TATCTCCCTTCCCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCG-------------- >LTR7d1_chr9_2275706_2281524_3190_ZNF534_k4me3_EncodeTxn_wangmod_GRO1of7_7old____chr9_22757062276105____1391 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCCGTGAC---------------------------------------------CTGCACA TATACATCCAGACGGC------------------------------------TTGAAGTA ACT--GAAGAATCACAAAAGAAGTGAAAATGGCC-------------------------- ------------------TGTTCCTGCCTT------------------------------ ------------------------------------------------------------ ----------------------------------------------AA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCGTTTCCTGG-------------- ----CTCATCCTGGCTCAA--AATCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCTACTCC-TGCCCGCCAGAGAACAA-CC CCC-TTTGAC--TAATTTTCCTTTGCTTACCCA-AATCTTATAA-----------AACG- GCCCCACCC-T---ATCTCCCTTC----ACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTG-------A-TTAAA-AGCTTCATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGAGTG-----A---- >LTR7d1_chr15_26719883_26720337_h3k27ac_weakenh_SOLO_NANOG_SOX2_7old____chr15_2671988326720337____1447 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACA TATACATTCAGATGGC------------------------------------CTGAAGTC ACT--GAAGAATCACAAAAGAAGTGAAAATGGCC-------------------------- ------------------TATTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCGGTCGT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCTTTCTCCTGG-------------- ----CTCAACCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTCATG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-CC CCC-TTTGAC--TAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCTACCC-C---ATCTCCCTTCACTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC AGGTG-------A-TTAAA-ACCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGTGAGTG-----A---- >LTR7d1_chrX_28892120_28898168_3009_ZNF534_k4me3_EncodeRepressed_NANOG_GRO5of7_GRO6of7_GRO7of7_C_7old___chrX_2889771428898168___1447 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTACACA TATACATCCAGATGGC------------------------------------CTGAAGTA ACT--GAAGAATCACAAAAGAAGTGAAAATGGCC-------------------------- ------------------TGTTCCTGCCTTAACTAAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGGCCGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCCTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTCTG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-CC CCC-TTTGAC--TAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACA- GCCCCACCC-C---AACTCCCTTCCCTGACTTTCTTTTCAGACTCGGCCCACCTGCACCC AGGTG-------A-TTAAA-AGCTTTATTGCTCACACAAAACCTG--TTT--GGTGGTCT CTTCACACAGACGCGAGTG---------- >LTR7d1_chr2_150112717_150118564_1797_ZNF534_EncodeTxn_GRO3of7_7old____chr2_150112717150113169____1445 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACA TATACATCCAGATGGC------------------------------------CTGAAGTA ACT--GAAGAATCACAAAAGAAGTGAAAATGGCC-------------------------- ------------------TGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCACAAAAGAAGTGAAAATGTCCGGTCCT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AACCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCCGCCAGAGAACAA-CC CCC-TTTGAC--TAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACA- GCCCCACCT-C---ATCTCCCTTTGCCGACT--CTTTTCGGACTCAGCCCGCCTGCACCC AGGTG-------A-TTAAA-AGCTTTATTTCTCACACAAAGCCTG--TTT--GGTGGTCA CTTCACACAGACGCGAGTG-----A---- >LTR7d1_chr2_82005634_82006082_weakenh_SOLO_NANOG_SMAD11_7old____chr2_8200563482006082____1448 -GTCCAGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCAGG TATACATCCAGATGGC------------------------------------CTGAAGTA ACT--GAAGAATCACAAAAGAAGTGAAAATGGCC-------------------------- ------------------TGTTCCTGCCTTAACTGAT----------------------- ---TACATTCCACCACAAAAGAAGTGAAAATGGCCAGTCCC------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACCCT-TGCCAGCCAGAGAACAA-CC CCC-TTTGAC--TAATTTTCCTTTACGTACCCA-AATCTTATAA-----------AACG- GCCCCACCC-C---ATCTCCCTTTGCTGACTGTCTTTTCAGACTCCGTCCACCTACACCC AGGTG-------A-TTAAA-AGCTTTATGGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGACGTGAGTG-----A---- >LTR7d1_chr11_49320583_49326841_2645_1_EncodeTxn_TCF4_GRO5of7_GRO6of7_GRO7of7_C_7old___chr11_4932647549326841___1358 TGTCAGGCCTCTGAGCCCAAG-----------------------CT-------------- ------------------------------------------------------TGCACG TATACATCCAGATGGC------------------------------------CTGAAGTA ACT--GAAGAGTCACAAAAGAAGAGCAAATAGCC-------------------------- ------------------AGTTCCTGC--------------------------------- ------------------------------------------------------------ ---------------------------------C----------TT-------TGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTG--------------- -------------GCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCATCCC-TGCCTGCCAGAGAACAA-CC CCC-TTTGAC--TAATTTTCCATTACCTACCCA-AATCCTATAA-----------AATG- GACCCAAAC-C--TATCTCCCTTCCTTGACTCTCTTTTCAGACTCAGCCCATCTGCACCC AGGTG-------A-TTAAA-AGCTTTATTGCTTAGCCAAAGCCTG--TTT--GGTGGTCT CTTCACGCTGACGTGAGTG---------- >LTR7d1_chr11_89381304_89387559_2623_1_EncodeTxn_GRO4of7_7old____chr11_8938130489381670____1357 -GTCAGGCCTCCGAGCCCAAG-----------------------CC-------------- ------------------------------------------------------TGCACG TATACATCCAGATGGC------------------------------------CTGAAGTA ACT--GAAGAGTCACAAAAGAAGAGAAAATGGCC-------------------------- ------------------GGTTCCTGC--------------------------------- ------------------------------------------------------------ ---------------------------------C----------TT-------TGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTG--------------- -------------GCCCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACTTTGTG-------------- ---------------------------AC-CCCCATCCC-TGCCTGCCAGAGAACAA-CC CCC-TTTAAC--TAATTTTCCATTACCTACACA-AATCCTATAA-----------AATG- GACCCAAAC-C--TATCTCCCTACCTTGGCTCTCTTTTCAGACTCAGCCCATCTGCACCC AGGTG-------A-TTAAA-AGCTTTATTGCTTAGCCAAAGCCTG--TTT--GGTGGTCT TTTCACGCTGACATGAGTG---------- >LTR7o_chrY_16851802_16852234_SOLO_C_7old___chrY_1685180216852234___1432 TGTCAGGCCTCTGAGCCCACG-----------------------CTAAGCCATCATATTC CCTGTGAC---------------------------------------------CTGCACG TATATATCCAGATAGC------------------------------------CTGACATA ACT--GAAGAATAAGAAAAGAAGTGAAAATGGCC-------------------------- ------------------TGTTCATGC--------------------------------- ------------------------------------------------------------ ---------------------------------C----------TTAG----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGTTCCGCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------AAG----CACCTTGTG-------------- ---------------------------AC-CCCTGCCCC-TGCCTGCCAGAGAAAAA-CC CCC-TTTAAC--TAATTTTCCACTACCCACCCA-AATCTTATAA-----------AACG- GCCCCACCC-C--TATCTCCCTT----------------GGACTCAGCCCACCTGCACCT AGGTG-------A-TTAAA-AGCTTTACTGCTCACACAGAGTCTA--TTT--GGTGGTCT CTTCACACAGATGTGAATG---------- >LTR7o_chr21_29750841_29751229_EncodeRepressed_SOLO_C_7old___chr21_2975084129751229___1388 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TATACATCCAGATGGC------------------------------------CTGAAGTA ACT--GAAGAATCACAAAAGAAGTGAAAATGGCT-------------------------- ------------------GGTCCATGC--------------------------------- ------------------------------------------------------------ ---------------------------------C----------TTAG----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGGTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCTGTCCC-TGCCTGCCAGCGAACAA-CC CCC-TTTGAC--TAATTTTCCACTATCCACCCA-AATCTTATAA-----------AACG- GCCCCACCC-C--TATCTCCCTTCGCTGACTCT--TTTCGGACTCAGTCCGCCTGCACCC AGGTG-------A-TTAAA-AGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGAC----------------- >LTR7o_chr2_224087354_224093515_2787_ZNF534_EncodeRepressed_C_7old___chr2_224093108224093515___1397 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATTGTATCC CCTGTGAC---------------------------------------------CTGCACG TATACATCCAGATGAC------------------------------------CTGAAGTA ACT--GAAGAATCACAAAAGAAGTGAAAATGGCT-------------------------- ------------------GGTCCCTGC--------------------------------- ------------------------------------------------------------ ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACCCC-TGCCTGCCAGAGAACAA-CC CCC-TTTGAC--TAATTTTCCACTGCCCACCCA-AATCTTATAA-----------AATG- GCCCCACCC-C--TATCTCCCTTCACTGACTCTCTTTTTGGACTCAGCCCACCTGCACCC AGGTG-------A-TTAAA-AGCTTCATTGCTCACACAAAGCCTG--TTT--GCTGGTCT CCTCACACGGACGCAAGTG---------- >LTR7d1_chr6_27378256_27378712_h3k27ac_enh_SOLO_NANOG_C_7old___chr6_2737825627378712___1394 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCGCATCC CCTGTGAC---------------------------------------------CTGCACG TATACATGCAGATGGC------------------------------------CTGAAGTA ACT--GAAGAATCACAAAAGAAGTGAAAATGGCC-------------------------- ------------------TGTTCCTGC--------------------------------- ------------------------------------------------------------ ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AATCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACCCC-TGCTCACCAGAGAACAA-CC CCC-TTTGAC--TAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AACG- GCCCCACCC-C--TATCTCCCTTCGCTGACTCTCTTTTTGGACTCAGCCCACCTGCACCC AGGTG-------A-TTAAA-AGCTTTATTGCTCACACAAAGCCTG--TTT--AGTGGTCT CTTCACACTGACGTGAGTG---------- >LTR7d1_chr22_34840713_34841164_h3k27ac_enh_SOLO_NANOG_C_7old___chr22_3484071334841164___1390 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATAGCATCC CCTGTGAC---------------------------------------------CTGCATG TATACATCCAGATGGC------------------------------------CTGAAGTA ACT--GAAGAATCACAAAAGAAGTGAAAATGGCC-------------------------- ------------------TGTTCCTGC--------------------------------- ------------------------------------------------------------ ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCTTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACCCC-TGCCTGCCAGAGAACAA-CC CCC-TTTGAC--TAATTTTCCTTTACCTACCCA-AATCTTATAA-----------AATG- GCCCCACCC-T--TCTCTCCCTTCGCTGAC--TCTTTTTGGACTCAGCCTGCCTGCACCC AGGTG-------A-TTAAA-AGCTTTATTGCTCACACAAAACCTG--TTT--AGTGGT-- CTTCACATGGACATGAGTG---------- >LTR7d1_chr10_45571174_45576085_2178_ZNF534_k27ac_EncodeTxn_7old____chr10_4557117445571568____1390 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAACTATCATATCC CCTGTGAC---------------------------------------------CTGCACC TATACATCAAGATGGC------------------------------------CTGAAGTA ACT--AAAGAATCACAAAAGAAGTGAAAATAGCC-------------------------- ------------------TGTTTCTGC--------------------------------- ------------------------------------------------------------ ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCGACCCC-TGCCCACCAAAGAACAA-CC CCC-TTTAAC--TAATTTTCCTTTACCCACCCA-AATCCTATAA-----------AATG- GCCCCACCC-T--T-TCTCCCTTTGCTGACTCTCTTTTTGGACTCAGCCCACCTGCACCC AGGTG-------A-TTAAA-AGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACA--GACGTGAGTG---------- >LTR7d1_chr1_98801055_98806858_2915_ZNF534_EncodeTxn_GRO5of7_GRO6of7_GRO7of7_C_7old___chr1_9880641598806858___1437 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCAC- TATACATCCAGATGGC------------------------------------CTGAAGTA ACT--GAAGAATCACAAAAGAAGTGAAAATGGCC-------------------------- ------------------TGTTCCTGCCTTAACTGAT----------------------- ---GACATTCCACCAAAAAATAAGTGAAAATGGCCAGTCTT------------------- ------------TG------------------CC----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATAATGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCATTCC-TGCCTGCCAGAGAACAA-CC CCC-T----------TTTTCCTTCACCTACCCA-AATCTTATAA-----------AATG- GCCCCACCC-T--TATCTCCCTTTGCTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC AGGAG-------A-TTAAA-AGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGACGCAAGTG---------- >LTR7d1_chr1_82354569_82360556_2636_ZNF534_KAP1_k27ac_EncodeTxn_GRO4of7_C_7old___chr1_8236016182360556___1395 TGTTAGGCCTATGAGCCTAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TATACATCCAGATGGC------------------------------------CTGAAGTA ACT--GAAGAATCACAAAAGAAGTGAAAATGGCC-------------------------- ------------------TGTTCCTGC--------------------------------- ------------------------------------------------------------ ---------------------------------C----------TTAA----CTGATGAA ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------GAG----CACCTTGTG-------------- ---------------------------AC-TCCCGCCCC-TGCCTGCCAAAGAACAA-CC CCC-TTTGAC--TAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C--TATCTCCCTTTGCTGACTCTTTTTTCGGACTCAGCCTGCCTGCACCC AGGTG-------A-TTAAA-AGCTTTATTGCTCACACAAATCCTA--TTT--GGTGGTCT CCTCATACGGACGCGAGTG---------- >LTR7o_chr15_74354144_74359784_1679_ZNF534_KAP1_EncodeTxn_7old____chr15_7435414474354537____1385 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCGTCATATCC CCTGTGAC---------------------------------------------CTGCACG TATACATCCAGATGGC------------------------------------CTGAAATA ACT--GAAGAATCACA-AAGAAGTGAAAATGGCC-------------------------- ------------------TGTTCCTGC--------------------------------- ------------------------------------------------------------ ---------------------------------C----------TTAA----CTGATAAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTC------------------ ---------TCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACCCC-TGCCAGCCAAAAAACAA-CC CCC-TTTGAC--TAATTTTCCATTACCTACCCA-AATCCTATAA-----------AACA- GCCCCACCC-C--TATCTCCTTTTGCTGA--CTCTTTTCGGATTCAGCCTGCCTGCACCC AGGTG-------A-TTAAA-AGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACAGGGACACGCATG-----A---- >LTR7o_chr11_83341985_83345578_2049_ZNF90_KAP1_EncodeRepressed_GRO3of7_C_7old___chr11_8334518783345578___1391 TGCCAGGCCTCTGAGCCCAAA-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACA TATACATCCAGATGGC------------------------------------CCGAAGTA ACT--GAAGAATCACAAAAGAAGTGAAAATGGCC-------------------------- ------------------TGTTCCTGC--------------------------------- ------------------------------------------------------------ ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTAG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAA--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACCCC-TGCCAGTCAAAGAA------ CCC-TTTGAC--TAATTTTCCACTACCTACCTA-AATCCTATAA-----------AACG- GCCCCACCC-C---ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC AGGTG-------A-TTAAA-AGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGAACACGTGTG---------- >LTR7d1_chr17_19458339_19458728_h3k27ac_enh_SOLO_NANOG_C_7old___chr17_1945833919458728___1389 TGTCAGGCCTCTGAGCTCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TATACATCCAGATGGC------------------------------------CTGAAGTA ACT--GAAGAATCACAAAAGAGATGAAAATGACC-------------------------- ------------------TGTTCCCGC--------------------------------- ------------------------------------------------------------ ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GCGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACCCC-TGCCAGCCAGAGAACAA-CC CCC-TTTGAC--TAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C--TATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGACTGCACCC AGGTG-------A-TTAAA-AGCTTTATTGCTCACATAAAGCCTG--TTT--GGTGGGCT CTTCACAAGGACGC--------------- >LTR7d1_chr19_47296710_47297157_EncodeTxn_SOLO_7old____chr19_4729671047297157____1392 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAT---------------------------------------------CTGCACG TATACATCCAGATGGC------------------------------------CTGAAGTA ACT--GAATAATCACAAAAGGAGTGAAAATGGCC-------------------------- ------------------TGTTCCTGC--------------------------------- ------------------------------------------------------------ ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TC--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCACCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACCCC-TGCCAGCCAGAGAACAA-CC CCC-TCTGAC--TAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACA- GCTCCACCC-C---ATCTCCCTTCGCTGACTCCCTTTTTGGACTCAGCCCTCCTGCACCC AGGTG-------A-TTAA--AGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTGT CTTCACACGGACGCGAGTG---------- >LTR7d1_chr12_75484505_75484896_enh_SOLO_C_7old___chr12_7548450575484896___1389 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCT CCTGTGAC---------------------------------------------CTGCACG TATACATCCAGATGGC------------------------------------CTGAAGTA ACT--GAGGAATCACAAAAGAAGTGAAAATGCCC-------------------------- ------------------TGTTCCTGC--------------------------------- ------------------------------------------------------------ ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-TCCCACCCC-TGCCAGCCAGAGAACAA-CC CCC-TTTGAC--T-ATTTTCCATT----ACCCA-AATCCTATAA-----------AACA- GCTCCACCC-C---ATCTCCCTTCATTGACTCTCTTTTTGAACTCAGCCTGCCTGTACCC AGGTG-------A--TAAA-AGCTTTATTGCTCACACAAAGACTG--TTT--GGTGGTCT CTTCACAAGGACGCAAGTG---------- >LTR7o_chr7_43436367_43436754_h3k27ac_EncodeRepressed_SOLO_C_7old___chr7_4343636743436754___1386 TGTCAGGCCTCAGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAT---------------------------------------------CTGCACG TATACATCCAGATGGC------------------------------------CTGAAGTA ACT--GAAAAATCACAAAAGAAGTGAAAATGGCC-------------------------- ------------------TGTTCCTGC--------------------------------- ------------------------------------------------------------ ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTC----------AG--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACCCC-TGCCTGCCAGAGAACAA-CC TCC-TTTGAC--TAATTTTCCACTGTCTACCCA-AATCCTGTAA-----------AACA- GCCCCACCC-T---ATCTCCCTTCGCTGACTCCCTTTTCGGACTCAGCCTGCCTGCGCCC AGGTG-------A-TTAAA-AGCTTTATTGCTCAGACAAAGCCTG--TTT--GGTGGTCT CTTCACATGAACACACGTG---------- >LTR7o_chr6_68070059_68070457_h3k27ac_enh_SOLO_NANOG_SOX2_7old____chr6_6807005968070457____1397 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAATCCATCATATCT CCTGTGAT---------------------------------------------CTGCACC TATACATCCAGATGGC------------------------------------CTAAAGTA ATG--GAAGAATCACAAAAGAAGTGATAATGGCC-------------------------- ------------------TGTTCCTGC--------------------------------- ------------------------------------------------------------ ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACCCC-TGCCAGTCAGAGAACAA-CC CCC-TTTGAC--TAATTTTCCACTACCTACCCA-AATCCTATAA-----------AATG- GCCCCACCC-C---ATCTCCCTTCGCTGACTCTCTTTTTGGACGCAGCCTGCCTGCACCC AGGTG-------A-TTAAA-AGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTGT CTTCACACGGACACACGTG-----A---- >LTR7o_chr8_7393593_7393977_EncodeRepressed_SOLO_C_7old___chr8_73935937393977___1384 TGTCAGACCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TATACATCCAGATGGC------------------------------------CTGAAGTA ACT--GAAGAATCACAAAAGAAGTGAAAATGGAC-------------------------- ------------------TGTTCATGC--------------------------------- ------------------------------------------------------------ ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTGGCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCTCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CAACTTGTG-------------- ---------------------------AC-CTCCACCCC-TGCCAGCCAGAGAACAA-CC CCC-TTTGAC--TAATTTTCCATTACCTACTCA-AATCCTGTAA-----------AACG- GCCCCACCC-C--TATCTCCCTACGCTGACTC-------------AGCCCACCTGCACCC AGGTG-------A-TTAAA-AGCTTTATTGCTCACATAAAGCCTG--TTT--GGTGGTCT CTTCACACGGATGCACGTG---------- >LTR7o_chr8_7917928_7918312_EncodeTxn_SOLO_7old____chr8_79179287918312____1384 -GTCAGACCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TATACATCCAGATGGC------------------------------------CTGAAGTA ACT--GAAGAATCACAAAAGAAGTGAAAATGGAC-------------------------- ------------------TGTTCATGC--------------------------------- ------------------------------------------------------------ ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTGGCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCTCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CAACTTGTG-------------- ---------------------------AC-CTCCACCCC-TGCCAGCCAGAGAACAA-CC CCC-TTTGAC--TAATTTTCCATTACCTACTCA-AATCCTGTAA-----------AACG- GCCCCACCC-C--TATCTCCCTACGCTGACTC-------------AGCCCACCTGCACCC AGGTG-------A-TTAAA-AGCTTTATTGCTCACATAAAGCCTG--TTT--GGTGGTCT CTTCACACGGATGCACGTG-----A---- >LTR7d1_chr13_33491863_33492257_EncodeTxn_SOLO_C_7old___chr13_3349186333492257___1393 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACA TATACATCCAGATGGC------------------------------------CTGAAGTA ACT--GAAGAATCACAAAGGAAGTGAAAATGGCC-------------------------- ------------------TGTTCCTGC--------------------------------- ------------------------------------------------------------ ---------------------------------C----------TTAA----CTGATGAC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGC-------------- ----CTCATCCTGGCTCAA--AAGCTCCCTTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACCCC-TGCCCGCCAAAGAACAA-CC CCC-TTTGAC--TAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C--TGTCTCCCTTC-CTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTG-------A-TTAAA-AGCTTTATTGCTCACATAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGCGAGTG---------- >LTR7d1_chr8_13821388_13821771_EncodeRepressed_SOLO_C_7old___chr8_1382138813821771___1362 TGTCAGGCCTCTGAGCCCAA---------------------------------------- ------AC---------------------------------------------CCACATG TATACATCCAGATGGC------------------------------------CT-----A ACT--GAAGGATCACAGAAGAGGTGAAAATGGCC-------------------------- ------------------TGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------TCC--------TT--GTGAAATTCCTTCT---GG-------------- ----CTCATCCTGGCTCAA--AACCTCCCCAAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CATCTTGTG-------------- ---------------------------TC-CCCCACCCC-TGCCGGCCAGAGAACAA-CC CCC-ATTGACT--AATTTTCTACTACCTACCCA-AATCCTATTA-----------AACG- GCTCCACCC-C--TATCTCCCTTTGCTGACTCTCTTTTCTGACTCAGCCCACCTGTACCC AGGTG-------A-TTAAA-AGCTTTATTG-TCACCCAAAGCCTG--TTT--GGTGATCT CTTCACACGGACATGAGTG---------- >LTR7o_chr6_61600186_61606272_2889_ZNF534_KAP1_EncodeRepressed_GRO3of7_7old____chr6_6160018661600634____1448 -GTCAGGCCTCTGAACCCAAG-----------------------CTAAGCCATCATATCC CTTGTGAC---------------------------------------------CTACATG TATACATCCAGATAGC------------------------------------CTGAAGTA ACT--GAAAAATCACAAAAGAAGTGAAAATGGCC-------------------------- ------------------TGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------AT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTTCCCAAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AA-CCCCGCCCC-TGCCAGCCAGAGAACAA-CC CCC-TTTGACTGTAATTTTCCACTACCCACCCA-AATCTTATAA-----------AACA- GCCACACCC-C--TATCTCCCTTCACTGAGTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGAG-------A-TTAAAAAGCTTTACTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGCGAGTG-----A---- >LTR7o_chr2_201221304_201221701_enh_SOLO_7old____chr2_201221304201221701____1397 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CTTGTGAC---------------------------------------------CTGCACA TATATATCCAGATGGC------------------------------------CTGAAGTA ACT--GAAGAATCACAAAAGAAGTGAAAATGGCC-------------------------- ------------------TGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAG--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCATCCC-TGCCAGCCAGAGAACAA-CC CCC-TTTGACTGTAATTTTCCACTACTTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C--TATCTCCCTTCACTGACTTTCTTTTCGGACTCAGCCCACCTGCACCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTTGTCT CTTCACAAGGACGCGAGTG-----A---- >LTR7o_chrX_529618_530006_EncodeRepressed_SOLO_C_7old___chrX_529618530006___1386 TGTCAGGCCTCTGAGCCCAAG-----------------------CGAAGCCATCATATGC CCTGTGAC---------------------------------------------CTGCACA TATACATCCAGATGGC------------------------------------CTGAAGTA ACC--GAAAAATCACGAAAGAAGTGAAAATGGCT-------------------------- ------------------TGTTCCTGCCTTAAGCGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC TTT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCCTCTCCTGG-------------- ----CTCATCCTGGCTCAA----------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------TC-ACCTGCCCC-TGCCAGCCAGAGAACAA-CC CCC-TTTGATTGTAATTTTCCACTATGTACCCA-AATCCTATAA-----------AACG- GCCCCGCCC-G--TATCTCCCTGCAGTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTG-------A-TTAAAAAGTTTTATTGCTCACATGAAGTCTG--TTT--CGTGGTCT CTTCACACGGACACGTGTG-----A---- >LTR7o_chrY_529618_530006_SOLO_C_7old___chrY_529618530006___1386 TGTCAGGCCTCTGAGCCCAAG-----------------------CGAAGCCATCATATGC CCTGTGAC---------------------------------------------CTGCACA TATACATCCAGATGGC------------------------------------CTGAAGTA ACC--GAAAAATCACGAAAGAAGTGAAAATGGCT-------------------------- ------------------TGTTCCTGCCTTAAGCGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC TTT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCCTCTCCTGG-------------- ----CTCATCCTGGCTCAA----------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------TC-ACCTGCCCC-TGCCAGCCAGAGAACAA-CC CCC-TTTGATTGTAATTTTCCACTATGTACCCA-AATCCTATAA-----------AACG- GCCCCGCCC-G--TATCTCCCTGCAGTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTG-------A-TTAAAAAGTTTTATTGCTCACATGAAGTCTG--TTT--CGTGGTCT CTTCACACGGACACGTGTG-----A---- >LTR7o_chr1_163591309163596529_2697_ZNF534_KAP1_EncodeTxn_GRO2of7__chr1_163591309163591705____1396 -GTCAGGCCCCCGAGCCCATG-----------------------CTAAGCCATCATATCC CCTGCGAC---------------------------------------------CTGCAGG TATACATCCAGGTGGC------------------------------------CTGAAGTA ATT--GAAGAATCACAAAAGAAGTGAAAATGGCC-------------------------- ------------------TGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------TC-CCCTGCCCC-TGCCAGCCAGAGAACAA-CC CCC-TTTGACTATAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C--TATATCCCTTCACTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTG---GTGGTCT CTTCACACAGACATGTGTG-----A---- >LTR7o_chr9_98274907_98275303_h3k27ac_EncodeTxn_SOLO_C_7old___chr9_9827490798275303___1396 TGTCAGGCCTGTGCGCCCAAG-----------------------CTAAGGCATCATATCC CCTGTGAC---------------------------------------------CTGCACA TATACATCCAGATGGC------------------------------------CTGAAGTA ACT--GAAGAATCACAAAAGAAGTGAAAATGGCC-------------------------- ------------------TGCTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCAAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------TC-CCCCGCCCC-TGCCCGCCAGAGAACAA-CC CCC-TTTGACTGTAATTT-CCACTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C--TATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTA-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGATGCGCGTG---------- >LTR7o_chr22_33834286_33834682_SOLO_7old____chr22_3383428633834682____1396 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TATACATCCAAATGGC------------------------------------CTGAAGTA ACT--GAAGAATCACAAAAGAAGTGAAAATGGCA-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAACTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAG--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------TC-CCCCACCCC-TGCCAGCTAGAGAACAA-CC CCC-TTTGATTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACA- GCCCCACCC-C---ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACGCAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGAGTG-----A---- >LTR7o_chrX_123777297_123777730_weakenh_SOLO_FOXP1_7old____chrX_123777297123777730____1397 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TATATATCCAGATGGC------------------------------------CTGAAGCA ACT--GAAGAATCACAAAAGAAGTGAAAATGGCC-------------------------- ------------------TGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------GC CTT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------TC-CCCCACCCC-TGCCAGCCAGAGAACAA-CC CCC-TTTGACTGTAATTTTCCACCACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C--TATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCTGCCTGCCCCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTAGTCT CTTTACACGGACGCGCGTG-----A---- >LTR7o_chr1_192793880_192794256_enh_SOLO_C_7old___chr1_192793880192794256___1375 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCATG TATACATCCAGATGGC------------------------------------CTGAAGTA ACT--GACGAATCACAAAAGAAGTGAAAATGACC-------------------------- ------------------TGTT-------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ -------------CC--------TT--GTGAAATTTCTTCTCCTGG-------------- ----CTCATCCTGGCTTAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----GACCTTGTG-------------- ---------------------------AC-CCCCACCCC-TGCCAGCCAGAGAACAA-CT CCC-TTTGACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AATG- GCCCCACCC-C---ATCTCCCTTCACTGACTTTCTTTTAGGACTCAGCCCACCTGTGCCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACACGTGTG-----A---- >LTR7o_chr17_80258157_80258544_enh_SOLO_C_7old___chr17_8025815780258544___1386 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TATACATCCAGATGGC------------------------------------CTGAAGTA ACT--GAAGAATCATAAAAGAAGTGAAAATGGCC-------------------------- ------------------TGTTTCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGC--------------CCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTA-------------- ---------------------------TC-CCCCACCCC-TGCCAGCCAGAGAACAA-CC CCC-TTTGACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AATG- GCCCCACCC-C---ATCTCCCTTCACTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACACGCTTG-----A---- >LTR7o_chr4_100991693_100997475_2658_ZNF534_EncodeRepressed_GRO5of7_GRO6of7_GRO7of7_C_7old___chr4_100997079100997475___1396 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TATACATCCAGATGGC------------------------------------CTGAAGTA ACT--GAATAATCACAAAAGAAGTGAAAATGGCC-------------------------- ------------------TGTTTCTGCCTTAACTGGT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------TC-CCCTGCCCC-TGCCTGCCAGAGAACAA-CC CCT-TTTGACTGCAATTTTCCACTACCTACCCA-AATCCTATAA-----------AATG- GCCCCACCC-C---ATCTGCCTTCCCTGACTCTCTTTTTGGACTCAGCCCACCTGCACCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACGCAAAGCCTG--TTT--GATGATCT CTTCACATGGA------------------ >LTR7o_chrX_30193877_30194266_EncodeRepressed_SOLO_7old____chrX_3019387730194266____1380 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TATACATCCAGATGGC------------------------------------CTGAAGTA ACT--GAAGAATCACAAAAGAAGTGAAAATGGCC-------------------------- ------------------TGTTTCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CA-----GG-------------- ---------------------------TC-CCCCGCCCC-TGCCCACCAGAGAACAA-CC CCC-TTTGACTGTAATTTTCCACTACCTACCCA-AATCTTATAA-----------AACG- GCCCCACCC-C---ATCTCCCTTTCCTGACTCT--TTTCAGACTCAGCCCACCTGCACCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACACACAGCCTG--TTT--GGTGGTCT CTTCACATGGA------------------ >LTR7o_chr10_89284720_89290887_2820_ZNF534_KAP1_k4me3_EncodeTxn_GRO5of7_GRO6of7_GRO7of7_7old____chr10_8928472089285118____1396 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATAC CCTGTGAC---------------------------------------------CTGCACG TATAAATCCGGATGAC------------------------------------CTGAAGTA ACT--GAAGAATCACAAAAGAAGTGAAAATGGCC-------------------------- ------------------TGTCCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCCAG-------------- ----CTCTTCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------CC-CCCCACCCC-TGCCAGCCAGAGAACAT-CC GCC-TTTGACTGTAATTTTCCACTATCTACCCA-AATCTTATAA-----------AAAC- AGCCCATCC-C---ATCTCCCTTCACTGACTCTCTTTTTGGACTCAGCTCGCCTGCACCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGCGAGTG-----A---- >LTR7o_chr3_98256003_98256389_weakenh_SOLO_C_7old___chr3_9825600398256389___1385 TGTCAGGCCTTTGAGCCCACG-----------------------CTAAGCCATCATATCT CCTGTGAC---------------------------------------------CTGCAC- TATACATTCGGATGGC------------------------------------CTGAAGTA ACT--GAAGAATCACTAAAGAAGTGAAAATGGCC-------------------------- ------------------TGTTCCTGCCTTAACTGAA----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACT--------TT--GTGAAATTCCTTC-------------------- --------TCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------TC-CCCCGCCC---GTCTGCCAGAGAACAA-CC CCC-TTTGACTGTAATTTTCCACTACCTACCCA-AATTCTATAC-----------AATG- GTCCCACCC-C---ATCTCCCTTTACTGACTCTCTTTTTGGACTCAGCCTGCCTGCACCC AGGTG-------A-TTAAAAAGCTTTATCGCTCACACAAAGCCTG--TTT--GGTGGTCT CCTCACACAGACGCGTGTA-----A---- >LTR7o_chr2_142489679_142495325_2737_ZNF534_EncodeRepressed_GRO5of7_GRO6of7_GRO7of7_C_7old___chr2_142494953142495325___1372 TGTCAGGCCTCTGAGC-----------------------------TAAGCCATCATATCT CCTGTGAC---------------------------------------------CTGCACG TATACATCCAGATGGC------------------------------------CTGAAGTA ACT--GAAAAATGACAAAAGAAGTGAAAATGGCC-------------------------- ------------------CGTTCCTACCTTAACAGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATT----CTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTGGTG-------------- ---------------------------AC-CTCCACCCC-TGCCAGCCAGAGAACAA-CC CCC-TTTGACTGTAATTTTCCACTACCTACCCA-AATGTTATAA-----------AATG- GCCCCACCC-C---ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTG-------A-TTAAAAAGCTTTATTGCTCAC------CAGG--TTT--GGTGGTCT TTTCACATGGA------------------ >LTR7o_chr15_82702377_82708400_2785_ZNF534_EncodeTxn_7old____chr15_8270237782702774____1397 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAACCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TATATATCCAGATGGC------------------------------------CTGAAGTA ATT--GAAGAATCACAAAAGAAGTGAAAATGGCC-------------------------- ------------------TGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------TC-CCCCGCCCC-TGCCCACCAAGGAACAC-CC CCC-TTTGACTGTAATTGTCCACTACCTACCCA-AATCCTATAA-----------AATG- GCCCCACCC-C--TATCTCCTTTCGTTGACTCTTTTTTCAGACTCAGCCGGCCTGCAACC AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTG--GGTGGTCT CTTCACATGGACGTGCGTG-----A---- >LTR7o_chr6_86458455_86458852_EncodeTxn_SOLO_7old____chr6_8645845586458852____1395 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCATA TGTGTATCCAGATGGC------------------------------------CTGAAGTA CGA--GAAGAATCACAAAAGAAGTGAAAATGGCA-------------------------- ------------------TGTCCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------TC-CCCCACCCC-TGCCCACCAGAGAACA--AC CCC-TTTGACTGTAATTTTCCACTACCCACCCA-AATTCTATAA-----------AACG- GCCC-ACCC-C--TATCTCTCTTCACTGACTCTCTTTTCAGACTCAGTCCGCCTGCAACC AGGTG-------A-TTAAAAAGCTTTATTGCTCACAAAAAGCCTG--TTT--GGCGGTCT CTTCACATGGACGTGCATG-----A---- >LTR7o_chr7_7577891275781936_1469_ZNF534_KAP1_k4me3_TSS_chimeric_GRO2of7__chr7_7577891275779306____1384 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCAGTGAC---------------------------------------------CTGCACG TATACATCCAGATGGC------------------------------------CTGAAGTA ACT--GAAGAATCACAAAAGAAGTGAAAATGGCC-------------------------- ------------------TGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTC-------------------- --------TCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------TC-CCCCACCCC-TGCCCGCCAGAGAACAA-CC CCA-TTTGACTGTAATTTTCCATTACCTACCCA-AATCCTATAA-----------AACA- GCCCCACCC-C--TATCTCCCTTCGCTGACTC--TTTTCAGACTCAGCCCGCCTGCACTC AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAATCCTG--TTT--GGTGGTCG CTTCACACGGACGCGAGTG---------- >LTR7o_chr7_75788164_75788562_h3k27ac_enh_SOLO_NANOG_44108_chimeric_7old____chr7_7578816475788562____1387 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCGTCGTATCC CCAGTGAC---------------------------------------------CTGCACG TATACATCCAGATGGC------------------------------------CTGAAGTA ACT--GAAGAATCACAAAAGAAGTGAAAATGGCC-------------------------- ------------------TGTTCTTGCCTTAATTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTC-------------------- --------TCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------TC-CCTCACCCC-TGCCCGCCAGAGAACAA-CC CCT-TTTGACTGTAATTTTCCATTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C--TATCTCCCTTGGCTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC AGGTG-------A-CTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGCGAGTG-----A---- >LTR7o_chrY_12368822_12369229_SOLO_C_7old___chrY_1236882212369229___1398 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCATG TATACATCCAGATGGC------------------------------------CTGAAGTA ACT--GAAGAACCACAAAAGAAGTGAAAATGGCC-------------------------- ------------------TGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTTATCCTGGCTCAA--ACGCTCTCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCTGCCCC-TGCCTGCCAGGAAACAA-CC TTC-TTTGACTGTAATTTTCCACTACCTACTCA-AATCTTATAA-----------AATG- GCCCCATCC-C--CATCTCCCTTCGCTGACTCTCTTTTTGGACTCAGCCTGCCTGCACCC AGGTG-------A-ATAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCC CTTCACAAGGACATGAGTG---------- >LTR7o_chr5_104039751_104040201_EncodeTxn_SOLO_C_7old___chr5_104039751104040201___1398 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CACATGAC---------------------------------------------CTGCACG TATACATCCAGATGGC------------------------------------CTGAAGTA ACT--GAAGAATCACAAAAGAAGTGAAAATGGTC-------------------------- ------------------TGTTTCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGCCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------GC-CCCTGCCCC-TGCCCACCAGAAAACAA-CG CTC-TTTGACTGTAATTTTCCACTACCCACCCA-AATCTTATAA-----------AACG- GCCCCACCC-C--TATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCTGACTGCACCC AGGTG-------A-ATAAACAGCTTTACTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGTGAGTG---------- >LTR7o_chr2_52337661_52338058_h3k4me3_EncodeTxn_SOLO_NANOG_7old____chr2_5233766152338058____1396 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TATACATCCAGACGGC------------------------------------CTGAAGTA ACT--TAAGAATCACAAAAGAAGTGAAAATGGCC-------------------------- ------------------TGTTCCTGCCTT-ACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCCGCCAGAGAACAA-CC CCC-TTTGACTGTAATTTTCCACTACCCACCCA-AATCTTATAA-----------AACA- GCCCCACCT-C--TATCTCCCTTCGCTGACTCTTTTTTCTGACTCAGCCCGCCTGAACCC AAGTG-------A-TTAAAAAGCTTTAGTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACACGAGTG-----A---- >LTR7o_chr2_224215695_224216135_h3k27ac_EncodeTxn_SOLO_NANOG_C_7old___chr2_224215695224216135___1388 TGTCAGGCCTCTGAGCCCAAT-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TATACATCCAGATGGC------------------------------------CTGAAGTA ACT--GAAGAATCACAAAAGAAGTGAAAATAGTC-------------------------- ------------------TGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACCCC-TGCTAGCCAGAGAACAA-CC CCC-TTTGACTGTAATCTTCCACTACCCACCCA-AATCTTATAA-----------AACA- GCCCTGCCC-C--TATCTCCCTTCGCTGACTCTCTTTTCAGACTCAGCCTGCCTGCACCC AGGTG-------A-TTCAAAAGCTTTATTGCTCACACAAAGCCTG--TCT--GGTGGTCT CATCACACGG------------------- >LTR7o_chr7_124008265_124008713_h3k27ac_EncodeRepressed_SOLO_7old____chr7_124008265124008713____1397 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCATG TATACATCCAGATGGC------------------------------------CTGAAGTA ACT--GAAGAATCACAAAAGAAGTGAAAATGGCC-------------------------- ------------------TGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTTCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCGC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCTCCCC-TGCCTGCCAGAGAACAA-CC CCC-TTTGACTGTAATTTTCCACTACCCACTCA-AATCTTATAA-----------AACG- GCCCCACCT-C--TATCTCCCTTCGCTGACTCTCTTTTTGGACTGAGCCTGCCTGCACCC AGGTG-------A-TTAAAAAGCGTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGACGCGAGTG-----A---- >LTR7d1_chr6_160228651160234322_2495_ZNF534_KAP1_k27ac_EncodeRepressed_GRO2of7__chr6_160228651160229043____1391 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGGC---------------------------------------------CTGCACG TATATATCCAGATGGC------------------------------------CTGAAGTA ACT--GAAGAATCACAAAAGAAGTGAAAATGGCC-------------------------- ------------------TGTTCCTGACTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCGTCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------TC-CCCCACCCC-TGCCCACCAGAGAACAA-CC CCC-TTTGACTGTAATTTTCCATTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C--TATCTCCCTTCGATGACTGTCTTTTTGGACTCAGACCTCCTGCACCC AGGTG-------A-ATAAACAGCCTCGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACAC--------------- >LTR7d1_chr1_89181108_89181507_EncodeRepressed_SOLO_C_7old___chr1_8918110889181507___1397 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCATG TATACGTCCAGATGGC------------------------------------CTGAAGCA AGT--GAAGAATCACAAAAGAAGTGAAAATGGCC-------------------------- ------------------TGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------AAG----CAACTTGTG-------------- ---------------------------AC-ACCCACCTC-TGCCCGCCAGAGAACAA-CC CCC-TTTGACTGTAATTTTCCTTTACCAACCCA-AATCCTGTAA-----------AATG- GTCCCAACC-C--TATCTCCCTTCACTGACTGTCTTTTCGGACTCAGCCAGCCTGCACCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGACACGAGTG---------- >LTR7d1_chr5_99229819_99230194_EncodeTxn_SOLO_7old____chr5_9922981999230194____1367 -GTCAGGCCTCTGAGCCCAAA-----------------------C--------------- -----------------------------------------------------CTGCACC TATTCATCCAGATAGC------------------------------------CTGAAGTA ACT--GAAGAATCACAAAAAAAGTGAAAATGGCC-------------------------- -------------------GTTC-----TTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCT---GG-------------- ----CTCATTCTGGCTCAA--AAGCTCCCTCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GCG----CACCTTGTG-------------- ---------------------------AC-CCCCACCCC-TGCCAGTCAGAGAACAA-CC CCC-TTTGAC--TAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACG- GCTCCACCC-C--TATCTCCCTTTGCTGATTCTATTTTCAGACTCAGCCCGCCTGCACCC AGGTG-------A-TTAAAA-GCTTTATTGATCACACAAAGCCTG--TTT--GGTGGTCT CTTCCCACAGACGTGAGTG---------- >LTR7o_chr8_105838506_105838896_weakenh_SOLO_C_7old___chr8_105838506105838896___1387 TGTCAGGCCTCTGAGCCCAAA-----------------------C--------------- -----------------------------------------------------CTGCATG TAT--ATCCAGATGGC------------------------------------CTGAAGCA AGT--GAAGAATCAC---AGAAGTGAAAATGGCC-------------------------- -------------------GTCC-----TTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTTG-------------- ----CTCATCTTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACGTTGTG-------------- ---------------------------AC-CCCCACCTC-TGCCAGTCAGAGAACAA-CC CCC-TTTGACTGTAATTTTGCACTACCTACCCA-AATCTTATAA-----------AACG- GCCCCACCC-C--TATCTCCCTTTGCTGACTCTCTTTTCAGACTCAGCCCACCTGCACCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGACGT--------------- >LTR7o_chr8_134970289_134970667_EncodeRepressed_SOLO_C_7old___chr8_134970289134970667___1348 TGTCAGGCCTCTGAGCCCAAG-----------------------C--------------- -----------------------------------------------------CTGCACG AATACATCCAGATGGC------------------------------------CTGAAGCA AGT--GAAGAATCTCAAAAGAAGTGAAAATGGCC-------------------------- -------------------GTTC-----TTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCC----------------- -----------TGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACCCC-TGCCAGCCAGAGAACAA-CC CCC-TTTGACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AATG- GCCCCACCC-C--TATTTCCCTTCACTGACTCTGTTTTCGGACTCAGCCCACTGGCACCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTT-------------------------- >LTR7o_chr13_31607334_31607706_EncodeTxn_SOLO_C_7old___chr13_3160733431607706___1363 TGTCGGGCCTCTGAGCCCAAG-----------------------C--------------- -----------------------------------------------------CTGCAAG TATTCATCCAGATGGC------------------------------------CTGAAGCA AGT--GAAGAATCACAAAAGAAGTGAAAATGGCT-------------------------- -------------------GTTC-----TTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCC----------------- -----------TGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACCCC-TGCCAGCCGGAGAACAA-CC CCC-TTTGACTGTAATTTTCCACTATCTACCCA-AATCCTATAA-----------AAGA- GCCCCACCC-C---ATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGATCT CTTCACACGGACTCGTTTG---------- >LTR7o_chrX_103761159_103767306_2868_transcribed_ZNF534_k4me3_enh_44108_wanghigh_GRO1of7_C_7old___chrX_103766932103767306___1364 TGTTAGGCCTCTGAGCCCAAG-----------------------C--------------- -----------------------------------------------------CTGCACG TATACGTCCAGATGGC------------------------------------CTGAAGCA AGT--GAAGAATCACAAAAGAAGTGAAAATGGCT-------------------------- -------------------GTTC-----TTAACTGGT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCC----------------- -----------TGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACCCC-AGCCAGCCAGAGAACAA-CC CCC-TTTGACTGTAATTTTCCACTACCTACCCA-AATCCTGTAA-----------AACA- GCCCCACCC-C---GTCTCCCTTCTCTGACTCTCTTTTCGGACACAGCCCGCCGGCAGCC AGGTG-------A-TTAGAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCATACAGACGCATCTG---------- >LTR7o_chr3_98191088_98196791_2148_ZNF534_KAP1_EncodeRepressed_GRO3of7_7old____chr3_9819108898191462____1364 -GTCAGGCCTCTCAGCCCAAG-----------------------C--------------- -----------------------------------------------------CTGCACA TATTCATCCAGATGGC------------------------------------CTGAAGCA AGT--GAAGAATGACAAATGAAGTGAAAATGGCC-------------------------- -------------------GTTC-----TTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCC----------------- -----------TGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACCCC-TGCCAGACAGAGAACAA-CC CCC-TTTGACTGTAATTTTCCACTACCTACCCA-AATCCTACAA-----------AACA- GCCCCACCC-T---ATCTCCCTTTGCTAACTCTCTTTTCCGACTCAGCCCGCCTGTACCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTC--TTT--GGTGGTCT CTTCACACAGACCCATGTG-----A---- >LTR7o_chr8_126284282_126284656_h3k27ac_EncodeTxn_SOLO_7old____chr8_126284282126284656____1363 -GTCAGGCCTTTGAGCCCAAG-----------------------C--------------- -----------------------------------------------------CTGCACC TATGCATCCAGATGGC------------------------------------CTGAAGCA AGT--GAAAAATCACAAAAGAAGTGAAAATGGCC-------------------------- -------------------GTTC-----TTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCC----------------- -----------TGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACCCC-TGCCAGCCAGAGAACGA-CC CCC-TTTGACTGTAATTTTCCACTACCTACCCA-AATGCTATAA-----------AACA- GCCCCACCC-C---ATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC ATGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGACGCGTGTG-----A---- >LTR7o_chr15_95043308_95043756_h3k27ac_enh_SOLO_NANOG_7old____chr15_9504330895043756____1448 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCAATCGTATCC CCTGTGAC---------------------------------------------CTGCACA TATACACCTAGATGGC------------------------------------CCGCAGCA AGT--GAAGAATCACAAAAGAAGTGAAAATGGCT-------------------------- -------------------GTTCATGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC AAT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACT--------TT--GTGAAATTCCTTCTCTTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCAAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCTACCCC-TGCCAGCCAGAGAACAA-CC CCC-TTTGACTGTAGTTTTCCACTATCTACCCA-AATCTTATAA-----------GATG- GCCCCACCC-C--TATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT TTTCACACGGATGCGCGTG-----A---- >LTR7o_chr8_81982945_81983319_EncodeRepressed_SOLO_7old____chr8_8198294581983319____1364 -GTCAGGCCTCTGACCCCAAG-----------------------C--------------- -----------------------------------------------------CTGCAAG TATTCATCTAGATGGC------------------------------------CCGAAGCA AGT--GAAGCATCACAAAAGAAGTGAAAATGTCC-------------------------- -------------------GTTCTTGCC-------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --T--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTC-------------------- --------TCCTGGCTCAA--AAGCTCCCCCTC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACCCC-TGCCAGCCAGAGAACAA-CC CCC-TTTGACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACA- GCCCCACCC-C--TATCTCCCTTCATTGACTCTCTTTTCGGACTAAGTCTGCCTGCACCA ACGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGATGCACGTG-----A---- >LTR7o_chr3_124827654_124828113_h3k27ac_enh_SOLO_NANOG_44108_SMAD11_7old____chr3_124827654124828113____1445 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCGTATCC CCTGTGAC---------------------------------------------CTGCACG TATACATCCAGATGGC------------------------------------CCGCAGCA AGT--GAAGAATCACAAAAGAAGTGAAAATGGCC-------------------------- -------------------GTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTCG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACCCC-TGCCAGCCAGAGAACAA-CC CCC-TTTGACTGTAATTTTCCACTACCTACCCA-AATCTTATAA-----------AACA- GCACCCCCC-C--AACCTCCCTTCGCTGACTCTCTTTTCAGACTCAGCCTGCCTGCACCC AGGTG-------A-TTAAAAAGCTTTATTGTTCGCGCAAAGCCTG--TTT--GGTGGTCT CTTCACAGGGACGTGCGTG-----A---- >LTR7o_chr7_42673708_42674144_EncodeTxn_SOLO_C_7old___chr7_4267370842674144___1436 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATGGTATCC CTTGTGAC---------------------------------------------GTGCACG TATACGTCCAGATGGC------------------------------------CCAAAGCA AGT--AAAGAATCACAAAAGAAGTGAAAATGGCC-------------------------- -------------------GTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCG----------A--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTATG-------------- ---------------------------AC-CCCCACCCC-TGCCAGCCAGAGAACAA-CC CCC-TTTGACTATAATTTTCCACTACCTACCCA-AATCTTATAA-----------GACG- ACCCCTCCC-C--TATCTCCCTTCACTGACTC-CGTTTCGGACTCAGCCCGCCTGCACCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACACA-AGCCTG--TTT--GGTGGTCT CTTCACATGGACGTGAGTG---------- >LTR7o_chr7_141578076_141584442_1753_ZNF534_KAP1_k27ac_enh_GRO1of7_C_7old___chr7_141584043141584442___1397 TGTCAGGCTTCTGAGCCCAAG-----------------------CTAAGCCATCGTATCC CCTGTGAC---------------------------------------------CTGCATG TATACGTCCAGATGGC------------------------------------CCGAAGCA AGT--GAAGAATCACAAAAAAAGTGAAAATGGCC-------------------------- -------------------GTCCCTGCC--------T----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCTTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAA----CACCTTGTG-------------- ---------------------------AC-CCTCACCCC-TGCCAGCCAGAGAACAA-CC CCC-TTTGACTATAATTTTCCACTACCTACCCA-AATCTTATAA-----------AATG- GCCCCACCC-T--TATCTCCCTTCGCTGACTCTCTTTTCGGACTCGGCCCACCTGCACCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACACGAGTG---------- >LTR7o_chr5_126684817_126685239_h3k27ac_weakenh_SOLO_NANOG_7old____chr5_126684817126685239____1421 -GTCAGGCCTCTGAACCCAAG-----------------------CTAAGCCATGGTATCC CCTGTGAC---------------------------------------------CTGCACG TATAAGTCCAGATGGC------------------------------------CCGAAGCA AGT--GAAGAATC-CAAAAGAAGTGAAAATGGCT-------------------------- -------------------GTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCCCCCC-TGCCTGCCAGAGAACAA-CC CCC-TTTGACTGTAATTTTCCACTACCCACCCA-AATCTTACAA-----------AACG- GCCCCACCC-C--TATCTCCGTTCGCTGACTCT--------------------------C AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--TGTGGTCT CTTCACACGGACGCAAGTG-----A---- >LTR7o_chr3_167422393_167431175_5206_ZNF534_KAP1_k4me3_EncodeTxn_7old____chr3_167422393167422843____1447 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCGTATCC CCTGTGAC---------------------------------------------CTGCATG TACATGTCCAGATGGC------------------------------------CTGAAGCA AGT--GAAGA-TCACAAAAGGAGTGAAAATGGCC-------------------------- -------------------GTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCGC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AT-CCCCACCCC-TGCCAGCCAGAGAATAA-CC CCC-TTTGACTGTAATTTTCCACTACCTACACA-AATCTTACAA-----------AACG- GCCCCACCC-A--TATCTCCCTTTGCTGACTCTGTTTTCGGACTTAGCCTGCCTGCACCC AGGAG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGATGTGAGTG-----A---- >LTR7o_chr13_54494757_54495204_EncodeRepressed_SOLO_7old____chr13_5449475754495204____1446 -GTCAGGCCTCCGAGCCCAAA-----------------------CTAAGCCATCGTATCC CCTGTGAC---------------------------------------------CTGCACG TATATGTCCAGATGGC------------------------------------CCGAAGCA AGT--GAAGAATCACAAGAGAAGTGAAAATGGCC-------------------------- -------------------GTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----TTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACCCC-TGCCTGCCAGAGAGCAA-CC CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATATCATAA-----------AACA- GCCCCACCC-C--A-TCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCAGCACCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--AGTGGTCT CTTCACACAGACTCGAGTG-----A---- >LTR7o_chr3_191927319_191927716_h3k27ac_TSS_SOLO_SMAD11_7old____chr3_191927319191927716____1397 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCTATCATATCC CCTGTGAC---------------------------------------------CTGCATG TATATGTCGAGATGGC------------------------------------CCGAAGCA AGT--GAAGAATCACAAAAGAAGTGAAAATGGCC-------------------------- -------------------G--------TTAACTGAA----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------CC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACCCC-TGCCAGCCAGAGAACAA-CC CCC-TTTGACTGTAATTTTCCATTACCTACCCA-AATCCTATAA-----------AACA- GCCCCACCC-C--TCTCTCCCTTCACTGACTCTCTTTTCAGACTCAGCCCACCTGCACCC AGGTA-------A-TTGAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGATGCGCGTG-----A---- >LTR7o_chr4_30148804_30149243_h3k27ac_enh_SOLO_NANOG_C_7old___chr4_3014880430149243___1439 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCGTATAC CCTGTGAC---------------------------------------------CTGCACA TATACGTCCAGATAAC------------------------------------CCAAAGCA AGT--GAAGAATCACAAAAGAAGTGAAAATGGCC-------------------------- -------------------ATTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATC--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAA--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC--CCCGCCCC-TGCCCGCCAGAGAACAA-CC CCC-TCTGACTGTAATTTTCCACTATCTACCCA-CATC-TATAA-----------AATG- GCCCCACCC-C--TGTCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGCTCT CTTCACACAGACG---------------- >LTR7o_chr3_143797445_143805925_5541_ZNF90_EncodeTxn_7old____chr3_143797445143797939____1392 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCATG -----GACCAGATGGC------------------------------------CCAAAGCA AGT--GAAGAATCACAAAAGAAGTGAAAATGGCC-------------------------- -------------------T--------TTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCATCCTGGCTCAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------TC-CCCCGCCCC-TGCCCACCAGAGAACAA-CC CCC-TTTGACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AATG- TCCCCACCC-A--TATCTCCCTTCACTGACTCTCTTTTGGGACTCAGCCCACCTGCACCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGATGCATGTG-----A---- >LTR7o_chr11_333767_334167_TSS_SOLO_NANOG_44108_C_7old___chr11_333767334167___1397 TGTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCACCGTATCC CCTGTGAC---------------------------------------------CTGCACG TATATACCCAGATGGC------------------------------------CTGAAGCA AGT--GAAGAATCACAAAAGAAGTGAAAATGGCC-------------------------- ------------------TGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCTTGG-------------- ----CTCATGCTGGCTGAA--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACCCC-TGCCCGCCAGAGAACAA-CC CCC-TTTGACTGTAATTTTCCTTTACCCACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C--TATCTCCCTTCGCTGGCTCTGTTTTTGGACTCAGCCCGCCTGCGCCC AGGTG-------A-TTAAAAAGCTTTATTGCTGACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGGACGCG---------- >LTR7o_chr20_43382369_43382800_EncodeRepressed_SOLO_7old____chr20_4338236943382800____1385 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TATATATCCAGATGGC------------------------------------CCGAAGCA AGT--GAAGAATCACAAAAGAAGTGAAAATGGCC-------------------------- ------------------AATTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACG--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTC----------AG--AAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCCGCCAGAGAACAG-CC CCC-TTTGAC--TAATTTTCCTTTACCCACCCA-AATCCTATAA-----------AATG- GCCCCACCC-C--TATCTCCCTTCGCTGACTCTGTTTTCGGACTCAGCCCGCCTGCACCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCATGTG-----A---- >LTR7o_chr4_179727664_179728101_h3k27ac_EncodeTxn_SOLO_7old____chr4_179727664179728101____1385 -GTCAGGCCTCTGAGCCCAAG-----------------------CTAAGCCATCATATCC CCTGTGAC---------------------------------------------CTGCACG TATGGGTCCAGATGGC------------------------------------CCAAAGCA AGT--GAAGAATCACAAAAGAAGTGAAAATGGTC-------------------------- ------------------AGTTCCTGCCTTAACCGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTACTCATGG-------------- ----CTC----------AG--AAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACCCC-TGCAGGCCAGAGAACTA-CC CTC-TTTCACAGTAATTGTCCATTACCTACCCA-AATCCTATAA-----------AATG- GCCCCAGCC-C--TATTTCCCTTAGCTGA--CTATTTTTGGACTCAGCTCGCCTGCACCC AGGTA-------A-TTAGAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGAGGCGCGTG-----A---- >LTR7d2_chr7_68218039_68218703_505_KAP1_EncodeRepressed_GRO5of7_GRO6of7_GRO7of7_C_7old___chr7_6821829268218703___1357 TGTCAGGCCTCCGAGCCCAAG-----------------------CC-------------- ------------------------------------------------------------ --TGCATCCAGATGGC------------------------------------CTAAGGCA ACT--GAAGAACCACAAAAGAATTGAAAATGGCT-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---A-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCA-------------GAACCTCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTATG-------------- ---------------------------AC-CCCCACCCC-TGCCCACCAGAGAACAA-CC CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AGCT- GCCCCACCC-C--TATCTCCCTTTGCTGACTCCTTTTTCGGACTCAGCCCACCTGCACCC AGGTG-------A-TTAAAAAGCTTTATTGTTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGCACGTG-----A---- >LTR7o_chr16_19893211_19893617_EncodeTxn_SOLO_C_proto7bc___chr16_1989321119893617___1406 TGTCAGGCCTCTGAGCCCAAG-----------------------C--------------- -----------------------------------------------------CTGCACC TATATGTCCAGATGGC------------------------------------CTGAAGCA AGT--AAAGAATCACAAAAGAAGTGAAAATGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----C------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ -------------------------------------CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCTGCCAAAGAACAA-CC CCC-TTTGACT--AATTTTCCTTTACCTACCCA-AACCCTATAA-----------AATG- GCCCCACCC-C--TATCTCCCTTCACTGA--CTCTTTTCGGACTCAGCCCGCCTACACCC AGGTG-------A-TTAAAAAGTTTTACTGCTCACACAAAGCCTG--TTT--GGTGGTCT -TTCACATGGACGTGCGTG---------- >LTR7o_chrX_99749772_99750138_EncodeTxn_SOLO_C_7old___chrX_9974977299750138___1366 TGTCAGGCCTCTGAGCCCAAG-----------------------C--------------- -----------------------------------------------------CTGCATG TATACATCCAGATGGC------------------------------------CTGAAGTA ACT--GAAGAATCACAAAAGAAGGGAAAATGGCT-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCA------------GAAGCTTCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCTCGCCCC-TGCCTGCCAGAGAATAA-CC TCC-TTTGACTGTAGTTTTCCAATACCTACCCA-AATCCTATAA-----------AATG- GCCCCACCC-C--TATCTCCCTTCACTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGACGTGCGTG-----A---- >LTR7o_chr2_101251269_101251631_h3k27ac_weakenh_SOLO_SMAD11_C_7old___chr2_101251269101251631___1362 TGTCAGGCCTCTGAGCCCAAG-----------------------C--------------- -----------------------------------------------------CTGCACA TATACATCCACATGGC------------------------------------CTGAAGTA ACT--GAAGAATCACAAAAGAAGTGCAAATGGCT-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATCCCTTCTCCTGG-------------- ----CTCA------------GAAGCTCCCCCGC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTATG-------------- ---------------------------AC-CCCCGCCCC-GGCCTGCCAGAGAACAA-CC CCC-TTTGACTGTAATTTTCCACTACCCACCCA-AATCCTATAA-----------GATG- GCCCCACCC-C--TCTCTCACTTCCCTGA--CTCTTTTCAGACTCAGCCCGCCTGCACCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAGAGCCTG--TTT--GGTGGTCT C--CACACGGACGCGCGTG-----A---- >LTR7o_chr2_51263033_51263398_weakenh_SOLO_C_7old___chr2_5126303351263398___1365 TGTCAGGCCTCTGAGCCCAAG-----------------------C--------------- -----------------------------------------------------CTGCACT TATACATCCAGATGTC------------------------------------CTGAAGTA ACT--GAAGAATCAGGAAAGAAGTGAAAATGGCT-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCA------------GAAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTATG-------------- ---------------------------AC-CCTCGCCCC-TGCTTGCAAAAGAACAA-CC CCC-TTTGACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACA- GCCCCACCC-C---ATCTCCCTTCACTGACTCTCTTTTTGGACTCATCCCGCCTGCACCC AGGTG-------A-TTAAAAAGCTTTACTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGCACGTG-----A---- >LTR7o_chr8_136618849_136619213_EncodeRepressed_SOLO_C_7old___chr8_136618849136619213___1364 TGTCAGGCCTCTGAGCCCAAG-----------------------C--------------- -----------------------------------------------------CTGCACA TATACATCCAGATGGC------------------------------------CTGAAGCA ACT--GAAGAATGACAAAAGAAGTGAAAATGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCTTTCTCCTGG-------------- ----CTCA------------GAAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCTCCCC-TGCCTGCCAGAGAACAA-CC -CC-TTTGACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C--TATCTCCCTTCCCTGACTCTCTTTTCAGACTCAGCCTGCCTGCACCC AGGTG-------A-TTAAAAAACTTTACTGATCACACAAAGCCTG--TTT--GGTGGTCT TTTCACACAGACACGCGTG-----A---- >LTR7o_chr6_63950227_63956522_3530_ZNF534_EncodeRepressed_GRO4of7_7old____chr6_6395022763950593____1364 -GTCAGGCTTCTGGGCCCAAG-----------------------C--------------- -----------------------------------------------------CTGCACA CAGATGTCCAGATGGC------------------------------------TTGAAGTA TCT--GAAGAATCACAAAAGAAGTGAAAATGTCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCA------------GAAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CATGTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCTGCCAGAGAACAA-CC CCC-TTTGACTATAATTTTCTATTACCTACCCA-AATCCTATAA-----------AACA- GCCCCACCC-C--TATCTCCCTTCTCTGACTCTCTTTTCAGACTCAGCCCACCTGCACCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGCGCGTG-----A---- >LTR7o_chr8_49419793_49426326_2414_ZNF534_EncodeRepressed_GRO4of7_7old____chr8_4941979349420159____1363 -GTCAGGTCTCTGAGCACA----------------------------------------- -----------------------------------------------------CTGCACG TATATATCCAGATGGC------------------------------------CTGAAGCA AGT--GAAGAATTACAAAAGAAGTGAAAATGGCC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----GTCA------------GAAGCTTCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTATG-------------- ---------------------------AT-GGCCACCCC-TGCCCGTCAGAAAGCAA-CC CCC-TTTGACTGTAATTTTCCACTACCTACACA-AATCCTATAA-----------AATG- GCCCCACCA-C--TATCTCCCTTCACTGA--GTCTATTTGGACTCAGCCTGCCTGCACCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACAAAAAGCCTG--TTT--GGTGTTCT CTTCACATGGACTTGTGTG-----A---- >LTR7o_chr11_121298713_121299068_h3k27ac_weakenh_SOLO_C_7old___chr11_121298713121299068___1353 TGTCAGGCCTCTGAGCCCAAG-----------------------T--------------- -----------------------------------------------------CTGCACG TATACATCCAGATGGC------------------------------------CTGAAGCA ACT--GAAGAATTACAAAAGAAGTGAAAATGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTAACATTCCTTCT-CTGG-------------- ----CTCA------------GAAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------A--------------CCCGCAAGAGAACAA-CT CCC-TTTGACTATAATTTTCCACTACCTACTCA-AATCCTTCAA-----------AACT- GCCCCACCC-C--TAACTCCTTTTGCTGA--CTCTTTTCGGACTCAGCCTGACTGCATCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGGCTG--TTT--GGTGGTCT CTTCACATGGACGTGCGTG-----A---- >LTR7o_chr3_84187812_84193404_2464_ZNF534_EncodeTxn_GRO5of7_GRO6of7_GRO7of7_C_7old___chr3_8419303984193404___1364 TGTCAGGCCTCTGGGCCCAAG-----------------------T--------------- -----------------------------------------------------CTGCACG TATACATCCAGATGGC------------------------------------CTGAAGTA ACT--GAAGAATGACAAAAGAAGTGAAAATGTCC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------GC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCA------------GAAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------CC-CCCCACCCC-TGCCTGTCAGAGAACAA-CC CCC-TTTGACTGTAATTTTCCACTACCCACCCA-AATCCTATAA-----------AACG- GCTGCACCC-C--TATCTCCTTTCGCTGA--CTCTTTTTGGACTCAGCCCACTTGCATCC AGGTG-------A-TTAAAAAGCTTCACTGCTCACACAAAGTCTG--TTT--GGTGGTCT CTTCACATGGACGTGCGTG---------- >LTR7o_chrX_3808975_3809365_EncodeTxn_SOLO_7old____chrX_38089753809365____1357 -GTCAGGCCTCTGAGCCCAAG-----------------------C--------------- -----------------------------------------------------CTGCACT TATACATCCAGATGGC------------------------------------CTGAAGTA ACT--GAAGAATCACAAAAGAAGTGAAAAT------------------------------ -------------------GTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCA------------AAAGATCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACCCC-TGCCAGCCAGAGAACAA-CC CCC-TTTGACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C--TGTCTCCCTTTGCTGA--CTCTTTTCAGACTCAGCCTGCCTGCACCC AGGTG-------A-TTAAAAAGCTTTACTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGTGTGTG-----A---- >LTR7o_chr2_154520933_154521329_TSSflanking_SOLO_C_7old___chr2_154520933154521329___1372 TGTCAGGCCTCTAAGCCCAAG-----------------------C--------------- -----------------------------------------------------CTGCACG TATATATCCAGATGGC------------------------------------CTGAAGTA ACT--GAAGAATCACAAAAGAAGTGCAAATGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------AGC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCA------------AAAGCTCCCCAAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACCGC-TGCCAGCCAGAGAACAA-TC CCC-TTTGACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AATG- GCCACACCC-C--TATCTTCCTTCGCTGA--CTCTTTTTGGACTCAGCCTGCCTGCACCC AGGTA-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGATCT CTTCACATGGACGCACGTG---------- >LTR7o_chr19_35067753_35068119_h3k27ac_TSS_SOLO_C_7old___chr19_3506775335068119___1366 TGTCAGGCCTCTGAGCCCAAG-----------------------C--------------- -----------------------------------------------------CTGCATG TATACATCCAGATGGC------------------------------------CTGAAGTA ACT--GAAGAATCACAAAAGAAGTGAAAATGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCA------------GAAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACCCC-TGCCCGCCAGAGAACAA-AC CCC-TTTGACTGTAATTTTCCACTACCTATCCA-AATCCCATAA-----------AACG- GCCCCACCC-C--TATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC AGGTG-------A-TTAGAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGATGCGCGTG-----A---- >LTR7o_chr6_78091529_78091959_weakenh_SOLO_7old____chr6_7809152978091959____1362 -GTCAGGCCTATGAGCCCAAG-----------------------C--------------- -----------------------------------------------------CTGCATT TATATATCCAGATGGC------------------------------------CTGAAGCA AGT--GAAGAATCACAAAAGAAGTGAAAATGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCA------------GAAGTTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCCGCAAGAGAACAA-CC CCC-TTTGACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACG- GCCACACCC-C--TATCTCTCTTCACTGA--CTCTTTTCGGACTCAGCCGGCCTGTACCC AGGTG-------A-TTAGAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTAT CTTCACATGGATGCATGTG-----A---- >LTR7o_chr10_64506820_64507214_weakenh_SOLO_7old____chr10_6450682064507214____1366 -GTCAGGCCTCTGAGCCCAAG-----------------------C--------------- -----------------------------------------------------CTGCATG TATACATCCAGATGGC------------------------------------CTGAAGCA AGT--GAAGAATCACAAAAGAAGTGAAAATGGCC-------------------------- ------------------GGTTCCTGCCTTAACTAAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCA------------GAAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTATG-------------- ---------------------------AC-CCCCACCCC-TGCCCACCAGAGAACAA-CC CCC-TTTGACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C--TGTCTCCTTTCCCAGACTCTCTTTTCGGACTCAGCCAGCCTGCACCC AGGTG-------A-TTAGAAAGCTGTATTGCTCACACAAAGCCTG--TTT--GTTGGTCT CTTCACACGGATGCATGTG-----A---- >LTR7o_chr4_186241956186247584_1674_ZNF534_KAP1_k4me3_TSS_NANOG_SMAD11_wanghigh_chimeric_GRO2of7__chr4_186247217186247584___1366 TGTCAGGCCTCTGGGCCCAAG-----------------------C--------------- -----------------------------------------------------CTACATG CATACATCCAGATGGC------------------------------------CTGAAGTA ACT--GAAGAATGACAAAAGAAGTGAAAATGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC GTT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCA------------GAAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACCCC-TGCCCGCCAGAGAACAA-CC CCC-TTTGACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACG- TCCCCACCC-C--TATCTCCCTTCACTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC AGGTG-------A-TTAAAAAGCTTTCTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCGCATGGACACACGTG-----A---- >LTR7o_chr12_61587106_61592931_1650_ZNF534_KAP1_EncodeRepressed_GRO4of7_7old____chr12_6158710661587480____1374 -GTCAGGCCTCTGGTCCCAAG-----------------------C--------------- -----------------------------------------------------CTGCACA TATACATCCAGATGGC------------------------------------CTGAAGTA ACT--GAAGAATGACAAAAGAAGTGAAAATGGTC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATACCTTCTCCTGG-------------- ----CTCA------------AAAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACACC-TGCCAGCCAGAGAATAA-CT CCC-TTTTACTATACTTTTCCACTACCTACCCA-AATCCTATAA-----------AACG- GTCTCACCC-C--TATCTCCCTTTGCTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC AGGTG-------A-TTAAAAAGGTTTATTGCTCACACAAAGCCTG--TTT--GGTGATCT CTTCACACGGATGCAGGTG-----A---- >LTR7o_chr22_35227631_35228005_weakenh_SOLO_7old____chr22_3522763135228005____1364 -GTCAGGCCTCTGGGCCCAAG-----------------------A--------------- -----------------------------------------------------CTGCACA TACATATCCAGATGGC------------------------------------CTGAAGTA ACT--GAAGAATGACAAAAGAAGTGAAAATGGCC-------------------------- ------------------TATACCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCA------------AAAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACCCC-TGCCAGACAGAGAACAA-CC CCC-TTTGACTGTAATTTTCCACTACCTACTCC-ACTCCTATAA-----------AACG- GCCCCACCC-C--TATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACAGGGACACACATG-----A---- >LTR7o_chr15_35245893_35246256_weakenh_SOLO_SMAD11_7old____chr15_3524589335246256____1363 -GTCAGGCCTCTGGGCCCAAG-----------------------C--------------- -----------------------------------------------------CTGCACG TATACATCCAGATGGC------------------------------------CTGAAGTA ACT--GAAGAATGACAAAAGAAGTGAAAATGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCA------------GAAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCTGCCCC-TGCCAGCCAGAGAACAA--C CCC-TTTGACTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C--TATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTG-------A-TTAAAAAGCTTTACTGCTCACACAAAGCGTG--TTT--GGTGGGCT CTTCACAGGGACGCACGTG-----A---- >LTR7o_chr14_9355939293564970_5509_1_EncodeTxn_GRO2of7__chr14_9356457493564970___1396 TGTCAAGCCTCTGAGCCTAAG-----------------------C--------------- -----------------------------------------------------CTGCACG TGTACATCCAGATGGC------------------------------------CTGAAGTA ATT--GGA-AATTAAAAAAGAAGTGAAAATGGCC-------------------------- ------------------GGCTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCA------------AAAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACCCC-TGCCAGCCAGAGAACAA-CC TCC-TTTGACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C--TATCTCCCTTCGCTGACTCTCTTTCCAGACTCAGCCCGCCTGCACCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGCGTGTG---------- >LTR7o_chr13_48004599_48005007_h3k27ac_EncodeTxn_SOLO_C_7old___chr13_4800459948005007___1364 TGTCAGGCCTCTGAGCCCAAG-----------------------T--------------- -----------------------------------------------------CTGCACG TATTCATCCAGATGGC------------------------------------CTGAAGTA ACT--GAAGATTCACAAAAGAAGTGAAAATGGCC-------------------------- ------------------TGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCA------------GAACCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACCCC-AGCCTGCCAGAGAACAA-CA CCC-TTTGACTGTAATTTTGCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C--TATTTCCCTTTGCTGACTCTCTTTTCCGACTCAGCCCGCCTGCACCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGTGAG--TTT--GGTGGTCT CTTCACATGGACGCGTGTG---------- >LTR7o_chrY_11896309_11896674_SOLO_C_7old___chrY_1189630911896674___1364 TGTCAGGCCTCTGAGCCCAAG-----------------------C--------------- -----------------------------------------------------CTGCACT TATACAACCAGGTGGC------------------------------------CTGAAGCA AGT--GAAGAATCACAAAAGAGATGAAAATGGCC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAACTCCTTCTCCTGG-------------- ----TTCA------------GAGGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTGGTG-------------- ---------------------------AC-CCCCACCCC-TGCCTGCCAGAGAACAA-CA CCC-TTTGACTGTAATTTTGCATTACCTACCCA-AATCCTATAA-----------AACA- GCCCCACCC-C---ATCTCCCTTCACTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC AGGTG-------G-TTAAAAAGCTTTATTGCTAACACAAAGTCTG--TTT--GGTGGTCT CTTCACATGGATGCACATG-----A---- >LTR7o_chrX_34229994_34230359_EncodeTxn_SOLO_C_7old___chrX_3422999434230359___1364 TGTCAGGCCTCTGAGCCCAAG-----------------------C--------------- -----------------------------------------------------CTGCACC TACACATCCAGATGGC------------------------------------CTGAAGCA AGT--GAAGAATCACAAAAGAAGTGAAAATGGCC-------------------------- ------------------GGTTCCTGCCTTAACCGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCA------------TAAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACCCC-TGCC-GCCAGAGAACAA-CC CCC-TTTGACTGTAATTTTCCATTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCT-C--TATCTCCCTTCGTTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC AGGTG-------A-TTAAAAAGCTTTCTTGCTCACACAAAGCCAG--TTT--GGTGGTCT CTTCACATGGACGCACGTG-----A---- >LTR7C_chr10_Sltr_147__chr10_5582326855823691_+_ -ATCAGGCCTCTGAGCCCAAG-----------------------C--------------- -----------------------------------------------------CTGCACG TATATATCCAGATGGC------------------------------------CTGAAGCA ACT--GAAGAATCACAAAAGAAGTGAAAATGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------CCT--------TT--GTGAAATTCCTTCTCCT-G-------------- ----CTCA------------GAAGCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------AAG----CACCTTGTA-------------- ---------------------------AC-CCCTGCCCC-TGCCCGCAAGAGAAAAA-CC CCT-TTTGACTGTAATTTTCCACTACCCACCCA-AATCCTATAA-----------AACT- GCCACACCC-C--TATCTCC-CTTGCTGACTCTCTTTTCGGACTCAACCCTCCTGCAGCC GGGTG-------A-TTAAAAAGCTTTATTGGTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACCCGCATG-----ACA-- >LTR7o_chr3_168833139_168833877_EncodeTxn_SOLO_C_7old___chr3_168833506168833877___1316 TGTCAGGCCTCTGAGCCCAAG-----------------------C--------------- -----------------------------------------------------CTGCACG TATACACCCAGATGGC------------------------------------CTGAAGCA ACT--GAAGAATCACAGAAGAAGTGAAAATGGCC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------CCT--------TG--GTGAAATTCCTTCTCTC-G-------------- ----CTCA------------GAAGCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCTGCCCC-TGCCCGCAAGAGAAAAA-CC CCC-TTTGACTGTAATTTTCCACTACTCACCCA-AATCCTGTAA-----------AACT- GCCCCACCC-C--TATCTTC-CTTGCTGGCTCTCTTTTCAGCCTCAGCCCACCTGCACCC AGGTG-------A-TTAAAAAGCTTTATTG------------------------------ ----------------------------- >LTR7o_chr1_115509141_115515447_2564_1_EncodeTxn_GRO4of7_C_7old___chr1_115515029115515447___1363 TGTCAGGCCTCTGAGCCCAAG-----------------------T--------------- -----------------------------------------------------CTGCACG TATACATCCAGATGGT------------------------------------GTGAAGCC ACT--GAAGAATCACAAAAGAAGTGAAAATGGCT-------------------------- ------------------GGTTTCTGCGTTAACCGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACT--------TT--GTGAAATTCCTTTTCTG-G-------------- ----CTCA------------GAAACTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------CAG----TACCTTGTG-------------- ---------------------------AC-CCCTGCCCC-TGCCTGCAAGAGAAAAA-CC CCC-TTTGACTGTAATTTTCCACTACCCACCCA-AATCCTATAA-----------AACT- GCCCCACCC-C--TATCTCC-CTTGCTGACTCTCTTTTTGGACTCAGCCCACCTGCACCC AGGTG-------A-TTAAAAAGGTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACTTGGACACATGTG-----AC--- >LTR7o_chr19_20359172_20359555_h3k27ac_EncodeRepressed_SOLO_7old____chr19_2035917220359555____1383 --TCAGGCCTCTGAGCCCAAG-----------------------CT-------------- --------AAGTCATTGTATCCCCTGTGAT-----------------------TTGCACG TATACATCCAGATGGC------------------------------------CTGAAGCA AGT--GAAGAATCACAAAAGA---GAAAATGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGGT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCTTCG-------------- ----TTCA------------GAGGCTTCCCAAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTT-------------- ---------------------------AC-CCCCGCCCC-TGCCCACAAGAGAAAAA-CC CCC-TTTGACTGTAATTTTCCACTACCCACCCA-AATCCTATAA-----------AATG- GCCCCACCC-C--TATCTCCTTTTGCTGACTCCATTTTCAGACGCAGCCCACCTGAACCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGCATGTG-----A---- >LTR7o_chrX_116924988_116925422_EncodeRepressed_SOLO_C_proto7bc___chrX_116924988116925422___1433 TGTCAGGCCTCTGAGCCCACG-----------------------CT-------------- --------AAGTCATCATATCCCTTGTGAC-----------------------CTGCACA AATACATCCAGATGGC------------------------------------CTGAAGCA AGT--GAAGAATCACAAAAGAAGTGAAAATGGCT-------------------------- ------------------GGTTCCCGCCTTAACTGGT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTATCCTGG-------------- ----CTCA------------GAAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GTG----CACCCTGTG-------------- ---------------------------AC-CCCCACCCC-TGCCTGCAGGAGAAAAA-CC CCC-TTTGACTGTAATTTTCCACTACCCACCCA-AAGCCTATAA-----------AATG- GCCACAACC-C--TATCTCCCTTTACTGACACTCTTTTCATACTCATCCCACCTGCACCG AGGTG-------A-TTAAAAAGCTTTATTGCTCACCCAAAGCCTG--TTT--CGTGGTCT CTTCACAGGGACATGTGTG-----AC--- >LTR7o_chr17_60384972_60385404_h3k27ac_enh_SOLO_44108_SMAD11_proto7bc____chr17_6038497260385404____1365 -GTCAGGCCTCTGAGCCCAAG--------------------------------------- -----------------------------C-----------------------CTGCACA -ATACATTCAGATGGC------------------------------------CTGAAGCA ACT--GAAGAATCACAAAAGAAGTGAAAATGGCA-------------------------- ------------------GGTTCCTGCCTTAACCGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACT--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCA------------GAAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GGG----CACCTCGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCTGCAAGAGAAAAA-CC CCC-TTTGACTGTAATTTTCCACTACCCACCCA-AATCCTATAA-----------AACA- GCCCCATCC-C--TATCTCCCTTCGCTGACTTTCTTTTTGGACTCAGCCCGCCTGCACCC AGGTG-------A-TTAAAAACCTTCATTGCTCACACAAAGTCTG--TTT--GGTGGTCT CTTCACATGGACGCGCATG-----ACA-- >LTR7o_chrX_149682989_149683399_h3k27ac_EncodeTxn_SOLO_proto7bc____chrX_149682989149683399____1366 -GTCAGGCCTCTGAGCCCAAG--------------------------------------- -----------------------------C-----------------------CTGCACA TATACATTCAGATGGC------------------------------------CTAAAGCA AGT--GAAGAATCACAAAAGAAGTGAAAATGGCT-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCA------------GAAGCTGCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCCTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCTGCAAGAGAAAAC-CC CCC-TTTGACTGTAATTTTCCACTACCCACCAA-AATCCTATAA-----------AACT- GCCCCACCC-C--TATCTCCCTTCGCTTACTCTCTTTTTGGAGTCAGCCCGCCTGCACCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT TTTCACATGGATACGCGTG-----ACA-- >LTR7o_chr10_26352429_26352861_EncodeRepressed_SOLO_7old____chr10_2635242926352861____1432 -GTCAGGCCTCTGAGCCCAAG-----------------------CT-------------- --------AAGCCATCATATTCCCTGTGAC-----------------------CTGCACG TATACATCCAGATGGC------------------------------------CTGAAGCA ACT--GAAGACTCACAAAAGAAGTGAAAATGGCT-------------------------- ------------------GATTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTTCTGG-------------- ----CTCA------------GAAGCTCCCCAAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTGGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCCACAAGAGAAAAA-CC CCC-TTTGACTGTAATTTTCCACTACCCACCCA-AATCCTATAA-----------AATT- GCCCCACCC-C--TATCTTCCTT-GCTGACTCTCTTTTTGGACTCAGCCTGCCTGCACCC AGGTG-------A-TTAAAAAGCTTTATTGCTTATACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGCACATG-----ACA-- >LTR7o_chr7_109641708_109647640_1648_ZNF534_EncodeTxn_GRO1of7_C_proto7bc___chr7_109647164109647640___1432 TGTCAGGCCTCTGAGCCCAAG-----------------------CT-------------- --------AAACCATCATATCCCCTGTGAC-----------------------CTGCACG TACACATCCAGATGGC------------------------------------CTGAAGCA ACT--GAAGAATCGCAAAAGAAGTGATAATGGCT-------------------------- ------------------GGTGTCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGA-------------- ----CTCA------------GAAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------AAG----CACCTTGTG-------------- ---------------------------AC-CCCTGCCCC-TCCCCACAAGAGAACAA-CC CCC-TTTGACTGTAATTTTCCACTACCCACCCA-AATCCTATAA-----------AATG- GCCCCATAC-C--TGTCTCCCTTTGCTGACTCTCTTTTTGGACTT-GCTCGCCTGCACCC AAGTA-------T-TTAAAAAGCTTTTTTGCTCATACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACATGTGTG-----AC--- >LTR7o_chrX_67985334_67985767_EncodeRepressed_SOLO_C_7old___chrX_6798533467985767___1366 TGTCAGGCCTCTGAGCCCAAG-----------------------C--------------- -----------------------------------------------------TTGCAGG TATACATCCAGATGGC------------------------------------CTGAAGCA ACT--GAAGGATCACAAAAGAAGTGAAAATAGCC-------------------------- ------------------ATTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ACT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACA--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCA------------GAAGCTCCCCAAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCTGCCCC-TGCCCACAAGAGAACAA-CC CCC-TTTGAGTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C--TATCTCCCTTCGCTGACTCCTTTTTCGAACACAGCCTGCCTGCACCC AGGTG-------A-TTAAAAAGCTTTATTGCTGACACAAAGCCTC--TTT--GGTGGTCT CTTCACATGGACGTCTGTG-----AC--- >LTR7o_chr11_80700042_80700400_EncodeRepressed_SOLO_KLF4_7old____chr11_8070004280700400____1349 -GTCAGGCCTCTGAGCCCAAG-----------------------C--------------- -----------------------------------------------------CTGCACG TATACATCCAGATGGC------------------------------------CTGAGGCA ACT--GAAGAATCATAAAAGAAGTGAAAATGGCC-------------------------- ------------------TGTTCCTGTCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCA------------GAAGCTCCCCAGC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCCACAAGAGAACAA-CC CCC-TTCGACTGTAATTTTCCACTACCCACCCA-AATCCTATAA-----------AACT- GCCCCACCC-C---ATCTCCCTTTGCTGACTGCTTTTTTGA----------------CCC AGGTG-------A-TTCAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGTGCGTG-----ACA-- >LTR7o_chr3_67037862_67044184_2732_ZNF534_EncodeTxn_GRO5of7_GRO6of7_GRO7of7_C_proto7bc___chr3_6704375167044184___1433 TGTCAGGCCTCTGAGCCCAAG-----------------------CT-------------- --------AAGCCATCGTATCCCCTGTGAC-----------------------CTGCACA TATATACCCAGAAGGC------------------------------------CTGAAGCA AGT--GAAGAATCACAAAAGAAGTGAAAATGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------CCACCATTGTGAT TTGTTTCTGCGCCACCTTAACTGAGCGATTA----------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CCCA------------GAAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCTGCAAGAGAAAAA-CC CCC-TTTGACTGTAATTTTCCACTACCGACCCA-AATCCTATAA-----------AATG- GCCCCACCC-C--TATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GATAGTCT CTTCACACGGACGTGCATG-----AC--- >LTR7o_chr14_87253862_87254296_EncodeRepressed_SOLO_proto7bc____chr14_8725386287254296____1431 -GTCAGGCCTCTGAGCCCAAG-----------------------CT-------------- --------AAACCATCGTATGCCCTGTGAC-----------------------CTGCATA TATATGTCCAGATGGC------------------------------------CTGAAGCA AGT--GAAGAATCACAAAAGAAGTGAAAATGGCC-------------------------- ------------------TGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------CCACCATTGTGAT TTGTTTCTGCCCCACCTTAACTCAGCGATTA----------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCA------------GAAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTCGTG-------------- ---------------------------AC-CCCCACCCC-TGCCCACAAGAGAAAAA-CC CCC-TTTGATTGTAATTTTCCACTACCCACCCA-AATCCTATAA-----------AATG- GCCCCACCC-C--TATCTCCCTTTGCTGACTCTCTTTTTGGTCTCAGCCCGCCTGCACCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGTGCATG-----A---- >LTR7o_chr1_10416523_10416951_EncodeTxn_SOLO_C_proto7bc___chr1_1041652310416951___1427 TGTCAGGCCTCTGAGCCCAAG-----------------------CT-------------- --------AAACTATCATATCCCCTGTGAC-----------------------CTGCATG TATACATCCAGATGGC------------------------------------CTGAAGCA AGT--GAAGAATCACAAAAGAAGTGAAAATGGCT-------------------------- ------------------GGTTCCTGCCTTTACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------CCACCATTGTGAT TTGTTCCTGCCCCACCTTAACTGAGCGATTA----------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGACATTCCTTCTCCTGG-------------- ----CTCA------------GAACCTCCCCAAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCGGCCC-TGCCCGTAAGAGAAAAA-CC CCC-TTTGACTGTAATTTTCCACTACCTGCCCA-AATCCTATAA-----------AATG- GCCCCACCC-C--TATCTCCCTTCGCTGACTCTT----CGGACTCAACCTGCCTGCACCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT TTTCACACGGATGCGCATG---------- >LTR7o_chr19_23025568_23026001_EncodeRepressed_SOLO_C_proto7bc___chr19_2302556823026001___1433 TGTCAGGCCTCTGAGCCCAAG-----------------------CT-------------- --------AAGCCATGATATCCCCTGTGAC-----------------------CTGCAGG AATACATGCGGATGGC------------------------------------CTGAAGCA AGT--GAAGAATCACAAAAGAAGTGAAAATTGCT-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------CCACCATTGTGAT TTGTTCCTGCCCCACCTTAACTGAGCCATTA----------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATG--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCA------------GAACCTCCCTCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACCCC-TGCCTGCAAGAGAAAAA-CC CCC-TTTGACTGTAATTTTCCACTACCCGCCCA-AATCCTTTAA-----------AACG- GCCCCACCC-C--TATCTCCCTTCGCTGACTCTTTTTTCGGACTCAGCCCGCTTGCACCC AGGTG-------A-TTAAAAAGCTTTATTGCTTACACAAAGCCTG--TTT--GGTGGTCT CTTCACGCGGTTGCGCATG-----AC--- >LTR7o_chr12_33087850_33090857_2215_ZNF534_EncodeRepressed_GRO4of7_C_proto7bc___chr12_3309042233090857___1431 TGTTAGGCCTCTGAGCCCAAG-----------------------CT-------------- --------TAGCCATCATATCCCCTGTGAC-----------------------CTGCATG TATACATCCAGATGGC------------------------------------CTGAAGCA AGT--GAAGAATCACAAAAGAAGTGAAAATGGCC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC TTC--------------------------------------------CCACCATTGTGAT TTGTTCCTGCCCCACCTTAACTGAGCGATTA----------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------AGC--------TT--GTGAGATTCCTTCTCCTGG-------------- ----CTCA------------GAACCTTCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CGCCTTGTG-------------- ---------------------------AT-CCCCCCCCC-CACCTGCAAGAGAAAAA-CC CCT-TTTGACTGTAATTTTCCACTATGCACCCA-AATCCTATAA-----------AACA- GCCCCACCC-C--TATCTCCCTTTGCTGACTCTCTTTGCGAACTCAGCCCACCTGCACCC AGGTG-------A-TTAAAAAGCTTTATTTATCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCACATG---------- >LTR7o_chr1_57531052_57531483_EncodeRepressed_SOLO_proto7bc____chr1_5753105257531483____1431 -GTCAAGCCTCCGAGCCCAAG-----------------------CT-------------- --------AAGCCATCACATCCCCTGTGAC-----------------------CTGCATG ACTACATCCAGATGGC------------------------------------CTGAAGCA AGT--GAAGAATCACAAAAGAAGTGAAAATGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------CCACCATTGTGAT TTGTTCCTGCCCCACCTTAACTGAGCAATTA----------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCA------------GAAGCTCCCTCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAA----CACCTTGTG-------------- ---------------------------A--CCCCTGCCC-TGCCTGCAAGAGAAAAA-CC CAC-TTTGATTGTAATTTTCCACTACCCACCGA-AATCCTATAA-----------AACT- GCCCCACCC-C--TATCTTCC-TTGCTGACTCTCTTTTCTGACTCAGCCCACCTGCACCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACAGGGACACACATG-----ACA-- >LTR7o_chr12_83377187_83377620_EncodeRepressed_SOLO_proto7bc____chr12_8337718783377620____1433 -GTCAGGCCTCTGAGCCCAAG-----------------------CT-------------- --------AAGCCATCGTATCCCCTGTGAC-----------------------CTGGAAG TATACATCCAGATGGC------------------------------------CTGAAGCA AGT--GAAGAATCACAGAAGAAGTGAAAATGGCT-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------CCACCATTGTGAT TTGTTCCTGCCCCACCTTAACTGAGCAGTTA----------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCA------------GAACCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCTGCAAGAGAAAAA-CC CCC-TTTGACTGTAATTTTCCACTACCCACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C--TATCTCCCCTTGCTGACTCTCTTTTTGGACTCAGCTCACCTGCACCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--CTT--GGTGGTCT CTTCACACAGATGCACATG-----ACA-- >LTR7o_chr3_175825245_175825677_h3k27ac_EncodeRepressed_SOLO_NANOG_C_proto7bc___chr3_175825245175825677___1432 TGTCAGGCCTCTGAGCCCAAG-----------------------CT-------------- --------AAGCCATCATATCCCCTGTGAC-----------------------CTGCATG TATACATCCAGATGGC------------------------------------CTGCAGCA AGT--GAAGAATCACAAAAGAAGTGAAAATGGCT-------------------------- ------------------GATTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------GC ATT--------------------------------------------CTACCATTGTGAT TTGTTCCTGTCCCATCTTAACTGAGCAATTA----------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCA------------GAAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCGTCCC-TGCCTGCAAGAGAAAAA-CC CCC-TTTGACTGTAATTTTCCACTGCCCACCCA-AATCCTATAA-----------AACT- GCCCCACCC-C--TATCTTCCG-CGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCATCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGCTCT CTTCACAGGGACGTGTGTG-----AC--- >LTR7o_chr1_93830337_93837088_1908_KAP1_EncodeTxn_GRO5of7_GRO6of7_GRO7of7_proto7bc____chr1_9383033793830747____1410 -GTCAGGACTCTGAGCCCAAG--------------------------------------- -----------------------------C-----------------------CTGCATG TATACATCCAGATGGC------------------------------------CTGAAGTA ACT--GAAGAATCACAAAAGAAGTGAAAATGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------CCACCATTGTGAT TTGTTCCCGCCCCACCTTAACTGAGCGATTA----------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTGCTCCTGG-------------- ----CTCA------------GAAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CATCTTCTG-------------- ---------------------------AT-CCCCGCCCC-TGCCTCCAAGAGAAAAA-CC CCC-TTTGACTACAATTTTCCACTACCCACCCA-AATCCTATAA-----------AATG- GCCCCACCC-C--TATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC ATGTG-------A-CTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGTGCGTC-----ACA-- >LTR7bc_chr2_20082562_20088123_2748_ZNF534_EncodeRepressed_GRO5of7_GRO6of7_GRO7of7_proto7bc____chr2_2008256220082996____1433 -GTCAGGCCTCTGAGCCCAAG-----------------------CT-------------- --------AAGCCATCATATCCCCTGTGAC-----------------------CTGCACA TATACGTCCAGGTGGC------------------------------------CTGAAGCA AGT--GAAGAATCACAATAGAAGTGAAAATGGCT-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------CCATCATTGTGAT TTGTTCCTGCCCCACCTTAACTGAGTGATTA----------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCA------------GAACCTCCCCAAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GGG----CACCTTGTG-------------- ---------------------------AC-CCCCACCCC-TGCCCGTAAGAGAAAAA-CC CCC-TTCGACTGTAATTTTCCACTACCCACCCA-AATCCTATAA-----------AACA- GCCCCACCC-C--TATCTCCCTTCACTGACTCTCTTTTTGGACTCAGCCTGCCTGCACCC AGGTG-------A-CTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGCACGTC-----ACA-- >LTR7bc_chr1_233472809_233473242_EncodeTxn_SOLO_C_proto7bc___chr1_233472809233473242___1433 TGTCAGGCCTCTGAGCCCAGG-----------------------CT-------------- --------AAGCCATCATATCGCCTGTGAC-----------------------CTGCACG TATACATCCAGACAGC------------------------------------CTGAAGCA AGT--GAAGAATCACAAAAGAAGTGAAAATGGCC-------------------------- ------------------GGTTCCTGGCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------CCACCACTGTGAT TTGTTCCTGCCCCACCTTAACTGAGCAATTA----------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCA------------GAACCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CGCTGTCCC-TGCCTGTAAGAGAAAAA-CC CCC-TTTGACTGTGATTTTCCACTACCTACACA-AATCCTATAA-----------AACG- TCCCCACCC-C--TGTCTCCCTTCACTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC AGTTG-------A-CTAAAAAGCCTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGACGCACGTG-----AC--- >LTR7bc_chr7_77339937_77345880_2355_ZNF90_KAP1_EncodeRepressed_GRO5of7_GRO6of7_GRO7of7_proto7bc____chr7_7733993777340369____1428 -GTCAGGCCTCTGAGCCCAAG-----------------------CT-------------- --------AAGCTATCATATCCCCTGTGAC-----------------------CTACACG TATACATCCAGCTGGC------------------------------------CTGAAGGA AGT--GAAGAATCACAAAAGAAGTGAAAATGGTC-------------------------- ------------------GGTTCCTGCCTTAAATGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------CCACCATTGTGAT TTGTTTCTGCCCCATCTTAACTGAGCGATTA----------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCTTTCTCCTGG-------------- ----CTCA------------GAAGCTCCCCGAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-ACACGCCCC-TGCCCATAAGACAA-AA-CC CCC-TTTGACTGTAATTTTCCACTACCCACCCA-AATCCTATGA-----------AACA- GTCCCACCC-C--TATCTCCTTTCGCTGACT--CTTTTTGGACTCAGCCCACCTGCACCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAACCCTG--TTT--GGTGGTCT CTTCACACAGACACACGTG-----A---- >LTR7o_chrY_12534185_12534551_SOLO_proto7bc____chrY_1253418512534551____1364 -GTCAGGCCTCTGAGCCCAAG--------------------------------------- -----------------------------C-----------------------CTGCACG TATACATCCAGATGGC------------------------------------CTGAAGCA AGT--GAAGAATCACAAAAGAAGTGAAAATGGCC-------------------------- ------------------AGTACCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCA------------GAACCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCATCCC-TGCCCACAAGAGAACAA-CC CCT-TTTGACTGTAATTTTCCACTACCCACCCA-AATCCTATAA-----------AACA- GCCCCACCC-C--TATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCACGTGAACCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGCGGTCT CTTCACAGAGACTCAAGTG-----A---- >LTR7o_chr8_92415773_92416204_EncodeRepressed_SOLO_proto7bc____chr8_9241577392416204____1431 -GTCAGGCCTCTGAGCCCAAG-----------------------CT-------------- --------AAGCCATCATGTCCCCTGTGAC-----------------------CTGCACG TATACCTCCAGATGGC------------------------------------TTGAAGCA AGT--GAAGAATCACGAAAGAAGTGAAAAAGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------CCACCATTGTGAT TTGTTTCTGCCCCACCTTAACTGAGCGATTA----------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTTG-------------- ----CTCA------------GAAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCCGAATGAGAACAA-CC CCG-TTTGACTATAATTTTCCACTACCCACCCA-AATCCTATGA-----------AACA- GCCCCACCC-C--TATCTCCCTTCACTGACTCTCTTTTCAGACTCAGCCCACCGGCACCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCAAACGGACGAGCGTG-----A---- >LTR7o_chr4_97136992_97140080_2377_KAP1_EncodeRepressed_GRO4of7_C_proto7bc___chr4_9713967297140080___1408 TGTCAGGCCTCTGAACCCAAG-----------------------CC-------------- --------A----------------------------------------------GCCCG TATACATCCAGATGGC------------------------------------CTGAAGCA AGT--GAGGAATCACAAACGAAGTGAAAATGGCC-------------------------- ------------------GTTTCCTGCTTTAACAGAT----------------------- ---A-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------CCACCATTGTGAT TTGTTCCTGCCCCACCTAAACTGAGTGATTA----------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCA------------GAAGCTGCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AA-CCCTGCCAC-TGCCCGTAAGAGAACAA-CC CCC-TTTGACTGTAATTTTCCACTACCCACCCA-AATCCTATAA-----------AGCA- GCCCCACCC-C--TATCTCCCTTCACTGACTCTCTTTTCAGACTCAGCCTGCCTGCACCC AGTTG-------A-TTAAAAAGCTTTATTGCTCACACGAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCATG---------- >LTR7bc_chr6_67867628_67874456_1578_KAP1_EncodeTxn_GRO5of7_GRO6of7_GRO7of7_C_proto7bc___chr6_6787400967874456___1433 TGTCAGGCCTCTGAGCCCAAG-----------------------CT-------------- --------AAGCCATCATATCCCTTGCCAC-----------------------ATGCACA TATACATCCAGATGGC------------------------------------CTGAAGCA AAT--GAAGAATCACAAAAGAAGTGAAAATGGCC-------------------------- ------------------GGTTCATGCCTTAACTGAT----------------------- ---A-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------CCACCATTGTGAT TTGTTCCTGCCCCACCTTAATTGAGTGATTA----------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCA------------GAAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCTACCCC-TGCCTGCAAGAGAAAAA-TC CCA-TTTGACTATAATTTTCCACTATCCACCCA-AATCCTATAA-----------AACG- GCCCTACCC-C--TATCTCGCTTTGCTGACTCTCTTTTCAGACTCAGCTTGCCTGCACCC AGGGG-------A-ATAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGGCT CTTCACCTGGACGCACGTG-----AC--- >LTR7o_chr20_1727239_1733570_1901_1_EncodeTxn_GRO5of7_GRO6of7_GRO7of7_C_proto7bc___chr20_17331381733570___1432 TGTCAGGCCTCC-AGCCCAAG-----------------------CT-------------- --------CAGCCATCATATCCCCTGTGAC-----------------------CTGCATG AATACATCCAGATGGC------------------------------------CTGAAGCA AGT--GAAGAATCACAAAAGAAGTGAAAATGGCC-------------------------- ------------------GGTGCCTGCCTTAATTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ACT--------------------------------------------CCACCATTGTGAT TTATTCCTGCCCCACCTTAACTGGGTGATTA----------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGC-------------- ----CTCA------------GAAGCTCCCGCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACCCC-TGCCCACAAGAGAAAAA-CA CCC-TTTGACTGTAATTTTCCACTACCCACCCA-AATCCTATGA-----------AATG- GCCTCACCC-C--TATCTCCCTTTGCTGACTCTCTTTTCAGACTCAGCCTGCCTGCACCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGACTG--TTT--AGTGGTCT CTTCACATGGATGCACGTG-----AC--- >LTR7o_chr1_169683070_169688724_2532_ZNF534_KAP1_EncodeRepressed_GRO5of7_GRO6of7_GRO7of7_proto7bc____chr1_169683070169683479____1409 -GTCAGACCTCTGAGCCCAAG--------------------------------------- -----------------------------C-----------------------CTGCAGG TATACACCCAGATGGC------------------------------------CTGAAGCA AGT--GAAGAATCACAAAAGAACTGAAAATGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------CCACCATTGTGAT TTGTTCCTGCCCCACCTTGACTGAGGGATTA----------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCCCCTGG-------------- ----CTCA------------GAAGCTCCCCGAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACCTTGTG-------------- ---------------------------AC-CCCCACCCC-TGCCCACAAGTGAAAAA-CC CCC-TTTGACTGTAATTTTCCACTACCCACCCA-AATCCTATAA-----------AACA- GCCTCACCC-C--TATCTCCCTTCGCTGACTCTCTTTTCAGACTCAACCTGCCTGCACCT AGGTG-------A-TTCAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGAC-CATGTG-----ACA-- >LTR7o_chr2_52075646_52076077_EncodeRepressed_SOLO_proto7bc____chr2_5207564652076077____1431 -GTCAGGCCTCTGAGCCCAAG-----------------------CT-------------- --------AAGCCATCATATCCCCTGTGAC-----------------------CTGCACA AATACATCCAGGTGGC------------------------------------CTGAAGCA AGC--GAAGAATCACAAAAGAAGTGAAAATGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------CCGCCATTGTGAT TTGTTCCTGCCCCACCTTAACTAAGCGATTA----------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------A-C--------TT--GTGAAATTTCTTCTCCTGG-------------- ----CTCA------------GAAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCG-CCC-TGCCCTCAAGAGCAAAA-CC CCC-TTAGACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AATG- GCCCCACTT-C--TATCTCCCTTCGCTGACTCTCTTTTTGGACTCAGCCTGCCCGCACCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACACACAGCCTG--TTT--GGTGGTCT CTTCACATGGATGTGTGTG-----ACA-- >LTR7o_chr13_84578832_84579222_EncodeRepressed_SOLO_7old____chr13_8457883284579222____1387 -GTCAGGCCTCTGAGCCCAGG-----------------------CT-------------- --------AAGCCATCAAATCCCCTGTGAC-----------------------CTACACG TATATATCCAGATGGC------------------------------------CTGAAGTA ACT--GAAGAATCACAAAAGAAGTGAAAATGGCC-------------------------- ------------------TGTTCCTGCCTTAACTGAT----------------------- ---T-------------------------------------------------------- ----------------------------------------------------------AC ------------------------------------------------------------ ---------------------------ATTA----------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------C-C--------TT--GTGAAATTTCTTCTCCTGG-------------- ----CTCA------------GAAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCTGACCC-TGCCCATAAGAGAAAAA-CC CCC-TTTGACTGCAATTTTCTGCCACCTACCCA-AATCCTACAA-----------AACA- GCCCCACCC-C--TATTTCCCTTCAGTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACGCAAAGCCTG--TTT--GGTGGTCT CTTCACACAGATGTGTGTG-----A---- >LTR7o_chr7_131587863_131588296_h3k27ac_weakenh_SOLO_C_proto7bc___chr7_131587863131588296___1433 TGTCAGGCCTCTGAGCCCAAG-----------------------CT-------------- --------AAGCCATCATATCTCCTGCGAC-----------------------CTGCACA TATACATCCAGTTGGC------------------------------------CTGAAGCA AGT--GAAGAATCACAAAAGAAGTGAAAATGACC-------------------------- ------------------AGTTCCTGTCTTCACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------GC ATT--------------------------------------------CCACCATTGTGAT TTGTTCCTGCCGCACCTTAACTGAGCGATTA----------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATCCCTTCTCCTGG-------------- ----CTCA------------GAAGCTCGCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AT-CCCTGCCCC-TGCCCGCAAGAGAAAAA-TC CCC-TTTGACTGTAATTTTCCTCTACCCACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C--TGTCTCCCTTCGCTGACTCTCTTTTCAGACTCAGCCCACCTGCACCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTTACACAGACACGCATG-----AC--- >LTR7o_chr5_7055005_7063741_2841_1_EncodeRepressed_GRO4of7_C_7old___chr5_70633337063741___1370 TGTCAGGCCTCTGAGCCCAAG-----------------------CT-------------- --------AAGCCATCATATCCCCTGTGAT-----------------------CTGCATG AATACATTCAGATGGC------------------------------------CTGAAGGA AGT--GAAGAATCACAAAAGAAATGAAAATGGCC-------------------------- ------------------AGTTCCTGCCTTCACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTAAAATTCCTTCTCCTGG-------------- ----CTCA------------GAAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAC----CACCTTGTG-------------- ---------------------------AC-CCCTGTCCC-TGCCCACCAGAGAACAA-CC CCC-TTTGACTGTAATTTTCCACTACTCACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C--TATCTCACTTAGCTGACTCTCTTTTCAGACTCAGCCCACCTGCACCC AGGTG-------A-TTAAAAAGC-------------------CTG--TTT--GGTGGTCT CTTCACATGGACACGTGTG-----AC--- >LTR7o_chr19_23032880_23033268_EncodeRepressed_SOLO_7old____chr19_2303288023033268____1388 --TCAGGCCTCTGAGCCCAAG-----------------------CT-------------- --------AAGCCATCATATCCCCTGTGAC-----------------------CTGCACG TATACATCCAGATGGC------------------------------------CTGAAGCA AGT--GAAGAATCATAAAAGAAATGAAAATGGAC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCA------------GAAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CACCGCCCC-TGCCCGCCAGAGAACAA-CC CCC-TTTGACTGTAACTTTCCACTACCTACCCA-AATCCTATAA-----------AGAG- GCCCCACAC-C--TATGTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTG-------A-TTAAAGCGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGACGTGCGTG-----ACA-- >LTR7bc_chr21_9847516_9850363_1498_1_GRO5of7_GRO6of7_GRO7of7_7old____chr21_98475169847905____1389 -GTCAGGCTTCTGAGCCCAAG-----------------------CT-------------- --------AAACCATCATATCCCCTGTGAC-----------------------CTGCACG TATACATCCAGGTGGC------------------------------------CTGAAGCA AGT--GAAGAATCACAAAAGAAGTGAAAATGGCT-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACT--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCA------------GAAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCCGCCGGAGAACAA-TC CTC-TTTGACTATAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C---ATCTCCCTTCACTGACTCTCTTTTCAGACTCAGCCCGCCTGCACCC AGGTG-------A-ATAAGCAGCCTTATTGCTCATGCAGTGTCTG--TTT--GGTGGTCT CTTCACATGGACGTGTGTG-----ACA-- >LTR7bc_chr9_41631249_41634104_1487_1_GRO5of7_GRO6of7_GRO7of7_C_7old___chr9_4163371441634104___1390 TGTCAGGCCTCTGAGCCCAAG-----------------------CT-------------- --------AAGCCATCATATCCCCTGTGAC-----------------------CTGCACT TATACATCCAGGTGGC------------------------------------CTGAAGCA AGT--GAAGAATCACAAAAGAAGTGAAAATGGCT-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACT--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCA------------GAAGATCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCCAACAGAGAACAA-TC CTC-TTTGACTATACTTTTCCACTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C--TATCTCCCTTCACTGACTTTCTTTTCAGACTCAGCCCGCCTGCACCC AGGTG-------A-ATAAACAGCCTTATTGCTCATGCAGTGTCTG--TTT--GGTGGTCT CTTCACATGGACGTGTGTG-----AC--- >LTR7bc_chr9_61841391_61844246_1498_1_GRO5of7_GRO6of7_GRO7of7_C_7old___chr9_6184385661844246___1390 TGTCAGGCCTCTGAGCCCAAG-----------------------CT-------------- --------AAGCCATCATATCCCCTGTGAC-----------------------CTGCACG TATACATCCAGGTGGC------------------------------------CTGAAGCA AGT--GAAGAATCACAGAACAAGTGAAAATGGCT-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACT--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCA------------GAAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCCGCCAGAGAACAA-TC CTC-TTTGACTATACTTTTCCACTACCTACTCA-AATCCTATAA-----------AACG- GCCCCACCC-C--TATCTCCCTTCACTGACTTTCTTTTCAGACTCAGCCCGCCTGCACCC AGGTG-------A-ATAAACAGCCTTATTGCTCATGCAGTGTCTG--TTT--GGTGGTCT CTTCACATGGACGTGTGTG-----AC--- >LTR7bc_chr9_67736588_67739443_1504_1_GRO5of7_GRO6of7_GRO7of7_7old____chr9_6773658867736978____1390 -GTCAGGCCTCTGAGCCCAAG-----------------------CT-------------- --------AAGCCATCATATCCCCTGTGAC-----------------------CTGCACG TATACATCCAGGTGGC------------------------------------CTGAAGCA AGT--GAAGAATCACAGAAGAAGTGAAAATGGCT-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACT--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCA------------GAAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCCGCCAGAGAACAA-TC CTC-TTTGACTATACTTTTCCACTACCTACTCA-AATCCTATAA-----------AACG- GCCCCACCC-C--TATCTCCCTTCACTGACTTTCTTTTCAGACTCAGCCCGCCTGCACCC AGGTG-------A-ATAAACAGCCTTATTGCTCATGCAGTGTCTG--TTT--GGTGGTCT CTTCACATGGACGTGTGTG-----ACA-- >LTR7bc_chr4_131665993_131668842_1489_1_EncodeRepressed_GRO5of7_GRO6of7_GRO7of7_7old____chr4_131665993131666383____1390 -GTCAGGCCTCTGAGCCCAAG-----------------------CT-------------- --------AAGCCATCATATCCCCTGTGAC-----------------------CTGCAGG TATACATCCAGATGGC------------------------------------CTGAAGCA AGT--GAAGAATCACAAAAGAAGTGAAAATGGCT-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACT--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCA------------GAAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACCCC-TGCCCGCCAGAGAACAA-CC CTC-TTTGACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AATG- GCCCCACCC-C--TATCTCCCTTCACTGACTCTCTTTTTGGACTCAGCCTGCCTGCACCC AAGTG-------A-ATAAACAGCCTTATTGCTCAGGCGCTGTCTG--TTT--GGTGGTCT CTTCACATGGACGTGTGTG-----ACA-- >LTR7bc_chr1_48500554_48500987_h3k27ac_weakenh_SOLO_proto7bc____chr1_4850055448500987____1430 -GTCAGGCCTCTGAGCCCAAG-----------------------CT-------------- --------AAGCCATCATATCCCCTGTGAC-----------------------CTGCACG TATACATCCAGATGGC------------------------------------CTGAAGCA AGT--GAAGAATCACAAAAGAAGTGAAAATGGCT-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---A-------------------------------------------------------- ----------------------------------------------------------AC GTT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------AAC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCA------------GAAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCTGCTCC-TGCATGCAAGAGAAAAA-AC CCC-TTTGACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-----GTCTCCCTTCACTGACT--CTTTTCGGACTCACCCTGCCTGCACCC AGGTG-------A-ATAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCA CTTCACACGGACGTGCGTG-----ACA-- >LTR7o_chr1_74002376_74002763_EncodeRepressed_SOLO_C_7old___chr1_7400237674002763___1386 TGTCAGGCTTCTGAGCCCAAG-----------------------CT-------------- --------AAGCCATCATATCCCCTGTGAC-----------------------CTGCACT TATACATCCAGATGGC------------------------------------CTGAAGCA ACT--GAAGAATCACAAAAGAAGTGAAAATGGCT-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------GC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCA------------GAAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCCGCCAGAGAACAA--C CCC-TTTGAC--TAATTTTTCACTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCG-C--TATCTCCCTTCATTGACTCTCTTTTTGGACTCAGCCTGCCTGCACCC TGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--GTT--GGTGGTCT CTTCACTCGGACATGCATG-----AC--- >LTR7o_chr4_107290579_107295851_1932_KAP1_EncodeRepressed_GRO5of7_GRO6of7_GRO7of7_C_7old___chr4_107295474107295851___1377 ---------TCTGAGCCCAAG-----------------------CT-------------- --------AAGCCATCATATCCCCTGTGAC-----------------------CTGCACG TATACATCCAAATGGC------------------------------------CTGAAGCA ACT--GAAGAATCACAAAAGAAGTGAAAATGGCT-------------------------- ------------------GGTTTCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCA------------GAAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCTGCCTC-TGCTCACCAGAGAACAA--- CCC-TTTGACTGTAATTTTCCATTACCTACCCA-AATCCTATAA-----------AACT- GCCCAACCC-C--TATCTCCCTTCACTGACTCCTTTTTTGGACTCAGCTCACCTACACCC AGGTG-------A-TTAAAAT-CTTTATTGCTCATACAAAGCCTG--TTT--GATGGTCT CTTCACACGGACGTGCATG-----AC--- >LTR7Y_chrX_Sltr_fr_1812__chrX_8495831784958680__ TGTCAGGCCTCTGAGCGCA----------------------------------------- ---------------------------GGC-----------------------CTGCACA TATACATCCAGATGGC------------------------------------CTCAAGCA AGT--GAAGAATCACAAAAGAAGTGAAAATGGCC-------------------------- ------------------AGTTCCTGCCTTAATTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCA------------GAAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAA----CACCTTGTG-------------- ---------------------------AC-TCCCACCCC-TGCCCACCAGAGAACAA-CC CCC-TTTGACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AATG- GCCCCACCC-C---ATCTCCCTTCGCTGACTCTCTTTTCGGAGTCAGCCCGCCTGCACCC AGGTG-------A-CTAAAAACCTTTATTGCTCACACAAAGCCTG--TTT--GATGGTCT CTTCACATGGACACGTGTG---------- >LTR7o_chr2_77897247_77897636_h3k27ac_EncodeRepressed_SOLO_7old____chr2_7789724777897636____1389 -GTCAGGCCTCTGAGGCCAAG-----------------------CT-------------- --------GAGCCATCATATCCCCTGTGAC-----------------------CTGCAGG AATACATCCAGATGGC------------------------------------CTGAAGCA AGT--GAAGGATCACAAAAGAAGTGAAAATGGCT-------------------------- ------------------GGTTCCTGCCTTAATTTAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC GTT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------CT--GTGAAATTCCTTCTCCTGG-------------- ----CTCA------------GAAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCTCACCCT-TGCCCGCCAGAAAACAA-CC CCC-TTTGACTGTAATTTTCTACTACCTACTCA-AATCCTATAA-----------AACT- GCCCCACCC-C---AACTCTCTTTGCTGACTGTCTTTTCCGACTCAGCCCGCCTGCACCC AGGTG-------A-CTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTAACATGGACACGCGTG-----ACA-- >LTR7o_chr8_7166466571670448_1428_ZNF534_KAP1_k27ac_EncodeRepressed_GRO2of7__chr8_7166466571665020____1355 -GTCAGGCCTCTGAGCCCAAG--------------------------------------- -----------------------------C-----------------------CTGCACG TATACATCCAGATGGC------------------------------------CTGAAGCA AAT--GAAGAATCACAAAAGAAGTGAACATGGCT-------------------------- ------------------GGATCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATGACTTCTCTTGG-------------- ----CTCA------------GAAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------AAG----CACCCTGTG-------------- ---------------------------AC-CTCCGCCCC-TGCCCACCAAAGAACAA-CC CCC-TTTGACT--AATTTTCCATTACCTACCCA-AATCCTATAA-----------AACA- GCCACACCC-C---ATCACCCTTCGCTGACTCTCTTTTCCAACTCAGCCTGCCTGCACCC AGGTG-------A-TTAAAAAACTTTATTGCTCACACAAAGCCTG--TTT--AGTGGTCT CTTCATATGGATGC--------------- >LTR7o_chr10_55971512_55976087_2643_ZNF534_EncodeRepressed_7old____chr10_5597151255971900____1388 -GTCAGGCCTCTGAGCCCAAG-----------------------CT-------------- --------AAGCCATCATATCCCCTGTGAC-----------------------CTGCACT TATACATCCAGATGGC------------------------------------CTGAAGCA AGT--GAAGAATCACAAAAGAAGTGAAAATAGCT-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTACTTCTCCTGG-------------- ----CTCA------------GAAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------AAG----CACCTTATG-------------- ---------------------------AC-CCCCACCAC-TGCCCGCCAGAGAACAA-CC CCC-TTTGACTGTAATTTTCCATTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C---ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC AACTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGAAGTTT CTTTACACGGACATGTGTG-----ACA-- >LTR7o_chrY_17131121_17142090_2257_1_GRO5of7_GRO6of7_GRO7of7_C_7old___chrY_1714172317142090___1365 TATCAGGCCTCTGAGCCCAAG--------------------------------------- -----------------------------C-----------------------CTGCACG TATACATCCAGATGAC------------------------------------CCTAAGCA ACT--GAAGAAACACAAAAAAATTGAAAATGGCC-------------------------- ------------------AGTTCCTGCCTTAATTTAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------AGC--------TT--GTGAAATTCCTTTTCCTGG-------------- ----CTCA------------GAAGCTCCCCGAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACCCC-TGCCTGCAAGACAACAG-AC CCC-TTTGACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACT- GCCCTACCA-C--TAACTCCCTTTGCTGACTCTCTTTTTGGACTCAGCCCCCCTGCACCC AGGTG-------A-TTAAAA-GCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGATGCATGTG-----AC--- >LTR7o_chr8_93878357_93878720_EncodeRepressed_SOLO_C_7old___chr8_9387835793878720___1363 TGTCAGGCCTCTAAGCCCAAG--------------------------------------- -----------------------------C-----------------------CTGCACG TATACATCCAGATGGC------------------------------------CCAAAGCA ACT--GAAGAATCACAAAAGAAGTGAAAATGGCC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGCAATTCCTTCTCCTGG-------------- ----CTCA------------GAAGCTCCCCCTC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACTTTATG-------------- ---------------------------AC-CCCCGTCCC-TGCCCCCAAGAGAACAA-CC CCC-TTTGACTCTAATTTTCCACTACCTACCCA-AATCCTATGA-----------AACT- GCCCCACCC-C--TAACTCCCTTTGCTGACTCTCTTTTTGGACTCAGCCCCCCTGCAC-C AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GATGGTCT CTTCACATGGATGCAAGTG---------- >LTR7o_chr3_168930920_168933315_736_KAP1_EncodeTxn_GRO4of7_C_7old___chr3_168932955168933315___1360 TATCAGGTCTCTGAGCCCAAG--------------------------------------- -----------------------------C-----------------------CTGCACA TAT--ATCCAGATGGC------------------------------------CTGAAGCA ACT--GAAGAATCACAAAAGAAGTGAAAATGGCC-------------------------- ------------------AGTTCCTGCCTTAATTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCA------------GAAGCTCCCCA-C--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCTGCCCC-TGCTTGCAAGACAACAA-CC CTC-TTTGACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACT- GTCCCACCC-C--TAACTCCCTTTGCTGACTCTTTTT--GGACTCAGCCCACCTGCACCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAATCCTG---TT--GGTGGTCT CTTCACACAGATGCACATG-----AC--- >LTR7o_chr7_48941053_48941413_EncodeRepressed_SOLO_7old____chr7_4894105348941413____1359 -GTTAGGCCTCTGAGTCCAAG--------------------------------------- -----------------------------C-----------------------CTGCTCA TAT--ATCCAGATGGC------------------------------------CTCAAGCA ATG--GAAGAATCAC-----AAGTGAAAATGGCG-------------------------- ------------------AGTTCCTGCCTCAACAGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACA--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCA------------GAGGCTCCCCAAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCTGCAAGAGAACAA-CC CCC-TTTGACT--CGTTTTCCACTACCTACCCA-AATCCTATAA-----------AACT- GCCCCACCC-C--TAACTCCCTTTGCTAACTCTCTTTTGGGACTCAGTCCACCTGCACCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--ATT--GGTGGTCT CTTCACAGGGATGCTCATG-----ACA-- >LTR7o_chr9_10909283_10909642_EncodeRepressed_SOLO_7old____chr9_1090928310909642____1357 -GTCAGGCCTCTGAGCCTAAG--------------------------------------- -----------------------------C-----------------------CTGC--- -----ATCCAGATGGC------------------------------------CTGAAGCA ACT--GAAGAATGACAAAAGAAGTGAAAATGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------GC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTC-TGG-------------- ----CCCA------------GAAGCTCCCCAAA--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCTGCCCC-TGCCTGCAAGAGAACAA-CC CCC-TTTGACTGCAATTTTCCACTGCTTACCCA-AATCCTGTAA-----------AACT- GCCCCACCC-C--TAACTCTCTTTGCTGACTCTCTTTTCAGACTTAGCCCGCCTGCACCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGCGGTCT CTTCACACAGACGCACGTG-----ACA-- >LTR7o_chr9_88514137_88514504_EncodeRepressed_SOLO_C_7old___chr9_8851413788514504___1366 TGTCAGGCCTCTGAGCCCAAG--------------------------------------- -----------------------------C-----------------------CTGCACG TATACAACCAGATAGC------------------------------------CTGAAGCA ACT--GAAGAATCACAAAAGAAGTTAAAATGGCC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTTCTTCTCCTGG-------------- ----CTCA------------GAAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACCTTGTG-------------- ---------------------------AC-CCCTGCCCC-TGCCCGCCAGGGAACAA-CC CCC-TTTGACTGTAATTTTCCACTACCTACTCA-AATCCTATAA-----------AACT- GACCCACCC-C--TAGCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACAGAAAGCCTG--TTT--GGTGGTCT CTTCACACGGATGCACGTG-----AC--- >LTR7o_chr5_44119742_44120093_EncodeTxn_SOLO_C_7old___chr5_4411974244120093___1341 ------------------------------------------------------------ -----------------------------C-----------------------CTGCACG TATACATCCAGATGAC------------------------------------CTGAAGCA ACT--GAAGAATCACAAAAGAAGTGAAAACGGCT-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------GC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTTCTTCTTCTGG-------------- ----CTCA------------GAAGCT-TCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCTGCCCC-TGCCTGCCAGAGAACAA--C CCC-TTTGACTGTAATTTTCCATTACCTACACA-AATCCTATAA-----------AACT- GCGCCACCC-C---ATCTCCCTTTGCTGACACTCTTTTTGGACTCAGCCCACCTGCACCC AGGTT-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--T-T--GGTGGTCT CTTCACAGGGACGTACCTG-----AC--- >LTR7o_chr3_122171296_122171683_EncodeRepressed_SOLO_C_7old___chr3_122171296122171683___1364 TGTCA-GCCTCTGAGCCCAAG--------------------------------------- -----------------------------C-----------------------CTGCAAG TATACATCCAGATGAC------------------------------------CTGAAGCA ACT--GTAGAATCACAAGAGAAGTGAAAATGGCT-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATC--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACA--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCA------------GAAGCTCTCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAA----TACCTTGTG-------------- ---------------------------AC-TCCCGCCCC-TGCCCGCCAGAGAACAA--C CCC-TTTGACTGTAATTTTCCATTACCTACCCA-AATCCTATAA-----------AACT- GCCCCACCC-C--TATCTCCCTTTGCTGACTCTCTTTTTGGACTCAGCCCACCTGCACCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGATCT CTTCACACAGATGTGCGTG-----AC--- >LTR7o_chrX_73801458_73809385_2684_KAP1_EncodeRepressed_GRO5of7_GRO6of7_GRO7of7_C_7old___chrX_7380901973809385___1366 TGTCAGGCCTCTGAGCCCAAG--------------------------------------- -----------------------------C-----------------------CTGCACA TATACATCCAGATGGC------------------------------------CTGAAGCA ACT--GAAGAATCACAAAAGAAGTGAAAATGGCC-------------------------- ------------------GATTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCA------------GAAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CACTACCCC-TGCCTGCCAGAGAACAA-CT CCC-TTTGATTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACT- GCCCCATCC-C--TATCTCCCTTTGCTGACTTTCTTTTCAGACTCAGCCCGCCTGCACCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCCCACGGATGCACGTG-----AC--- >LTR7o_chr4_91045790_91046151_EncodeRepressed_SOLO_C_7old___chr4_9104579091046151___1361 TGTCAGGCCTCTGAGCCCAAG--------------------------------------- -----------------------------C-----------------------CTGCACA TATACATCCAGATGGC------------------------------------CTGAAGCA AGT--GAAGAATCACAAAATAAGTGAAAATGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCA------------GAAGCTCCCCCAT--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCTGCCCC-TGCCGGCCAGAGA---A-CC CCC-TTTGACTGTAATTTTCCATTATCTACCCA-AATCCTGTAA-----------AACA- GCCCCACCC-C--TATCTCCCTTTGCTGACTCTCTTTTCTGACTCAGCCCACCTGCACCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGATGCATGTG---------- >LTR7o_chrY_20905364_20905731_SOLO_7old____chrY_2090536420905731____1366 -ATCAGACCTCTGATCCCAAG--------------------------------------- -----------------------------C-----------------------CTGCATG TATACATCCAGATGGT------------------------------------GTGAAGCA ACT--GAAGAATCATAAAAGAAGTGAAGTTGGCC-------------------------- ------------------AGTTCCTGCCTTAACTGGT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GAGAAATTCCTTCTCCTGA-------------- ----CTCC------------GAAGCTCCGCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACGTTATG-------------- ---------------------------AC-CCCCATCCC-TGCCCATGAGAGAAAAA-CA CCC-TTTGACTGTAATTTTCCACTACCTACCCA-AATTCTATAA-----------AATG- GCCCCGCCC-C--TATCTCCCTTTGCTGACTCTTTTTTTGGACTCAGTCCACCTGCATCC AGGTG-------A-TTAAAAAGATTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGAAACACATG-----ACA-- >LTR7o_chrX_86537781_86538147_EncodeRepressed_SOLO_7old____chrX_8653778186538147____1366 -GTCAGGCCTCTGAGCCCAAG--------------------------------------- -----------------------------C-----------------------CTGCAGG TATACATCCAGATGGC------------------------------------CTGAAACA ACT--GAAGAATCACAAAAGAAGTGAAAATGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCA------------GAAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AA-CCCCGCCCC-TGCCCACCAGAGAACAA-CC CCC-TTTGATTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AATG- GCCCTACCC-C--TATCTCCCTTTGCTGACTCTCTTTTTGGACTCAGCCCACCTGCACCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGATGCACGTG-----ACA-- >LTR7o_chr15_45551236_45551603_EncodeRepressed_SOLO_C_7old___chr15_4555123645551603___1366 TGTCAGGCCTCTGAGCTCAAG--------------------------------------- -----------------------------C-----------------------CTGCATG TATACATCCAGATGGC------------------------------------CTGAAGCA AGT--GAAGAATCACAAAAGAAGTGAAAATGGCT-------------------------- ------------------GGTCCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC GTT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GAGAAATTCCTTCTCCTGG-------------- ----CTCA------------GAAGCTCCCACAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAA----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCCACCAGAGAACAA-CC CCC-TTTGACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C--TATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTG-------C-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GATGGTCT CTTCACACGGACGCATGTG-----AC--- >LTR7o_chr4_106410477_106410841_SOLO_C_7old___chr4_106410477106410841___1359 TGTCAGGCCTCTGAGCCCAAG--------------------------------------- -----------------------------C-----------------------CTGCACG TATACATCCAGATGGC------------------------------------CAGAAGCA AGT--GAAGAATCACAAAAGAAGTGAAAATGGCC-------------------------- ------------------AGTGCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------CC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GCGAAATTCCTTCTCCTGG-------------- ----CTCA------------GAAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTA-------------- ---------------------------AC-CCCCGCCCC-TGCCCGCCAAAGAATAA-CC GCC-TTTGACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACA- GCCCCACCC-T--TACCTCCCTTTGCTGACTCTCTTTTTGGACTCAGCCCACCTGCACCC AGGTG-------A-TTAAAAAACTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGAC------------AC--- >LTR7o_chrX_94221719_94222108_EncodeRepressed_SOLO_7old____chrX_9422171994222108____1366 -GTCAGGCCTCTGAGCCCAAG--------------------------------------- -----------------------------C-----------------------CTGCACG TATACATCCAGATGGC------------------------------------CTGAAGCA AGT--GAAGAATCACAAAAGAAGTGAAAATGGCC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--ATGAAATTCCTTCTCCTGG-------------- ----CTCA------------GAAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCTGCCCC-TGCCCGCCAGAGAACAA-CC CCC-TTTGACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AATG- GCCCCACCC-C--TATCTCCCTTCGCTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GATGGTCT CTTCACACGGATGCATGTG-----ATA-- >LTR7o_chr15_55417735_55418106_enh_SOLO_C_7old___chr15_5541773555418106___1348 TGTCAGGCCTCTGAGCCCAAG--------------------------------------- -----------------------------C-----------------------CTGCACG TATACATCCAGATGGC------------------------------------CTGAAGCA AGT--GAAGAATCACAAAAGAAGTGAAAATGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCA------------GAACCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCTGCCCC-TGCCCGCCACAGAATAA-CC CCC-TTTGACTGTAATTTTCCATTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C--TATCTCCCTTCGCTGACTGTCTTTTCGGACTCAGCCCGCCTCCACCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTT-------------------------- >LTR7o_chrX_16580050_16580415_SOLO_C_7old___chrX_1658005016580415___1364 TGTCAGGTCTCTGAGCCCAAG--------------------------------------- -----------------------------C-----------------------CTGCACG TATACATCCAGATGGC------------------------------------CTGAAGTA ACT--GAAGAATCACAAAAGAAGTGAAAATGGCC-------------------------- ------------------GATTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCA------------GAAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCTGCCCC-TGCCCGCCAGAGAGCAA-CC CCC-TTTGACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C--TATCTCCCTTCGCTGACTCC--TTTCGGACTCAGCCCGTCTGCACCC AGGTG-------A-TTAAAAAGCTTTATTGTTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGTATG-----A---- >LTR7o_chr10_70626156_70626798_h3k27ac_enh_SOLO_44108_SMAD11_SOX2_TCF4_7old____chr10_7062615670626798____1365 TGTCAGGCCTCTGAGCCCAAG--------------------------------------- -----------------------------C-----------------------CTGCACA TATACATCCAGATGGC------------------------------------CTGAAGCA AGT--GAAGAATCACAGAAGAAATGAAAATGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ACT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTTTCCTGG-------------- ----CTCA------------GAAGCTCCTCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GGG----CACCTTATG-------------- ---------------------------TC-CCCTGCCCC-TGCCCACCAAAGAACAA-CC CCC-TTTGACTGTAATTTTCCACTACCTACCCA-AATTCTATAA-----------AACG- GCCCCACCC-G--TATCTCCCTTCACTGACTCTCTTTTTGGACTCAGCTCGTCTACACCC AGATG-------A-TTAAAAACCTTTATTGCTCACACAAAGCCTG--TTT--GGTGATCT CTTCACACGGATGCGTGTG-----A---- >LTR7o_chr1_196215314_196215677_EncodeTxn_SOLO_C_7old___chr1_196215314196215677___1363 TGTCAGGCCTCTGGACCCAAA--------------------------------------- -----------------------------C-----------------------CTGCACG TATACATCTAGATGGC------------------------------------CTGAAGTA ACT--GAACAATGACAAAAGAAGTGAAAATGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------GC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCA------------GAAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------TC-CCCCGCCCC-TGCCCGCCAGGGAACAA-CC CTC-TTTGACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACG- GTCC-ATCA-C--TATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCGTCTGCCCCC AGATG-------A-TTAAAAAGCTTTATCACTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGATGTGTGTG---------- >LTR7o_chr3_93938055_93944071_1829_1_EncodeTxn_7old____chr3_9393805593938442____1364 -GTCAGGCCTCTGAGCCCAAG--------------------------------------- -----------------------------C-----------------------CTGCACA TATAGATCCAGATGGC------------------------------------CTGAAGCA AGT--GAAGGATCACAAAAGAAGTGAAAATGGCT-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCA------------GCAGCTCCCCCAT--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTA-------------- ---------------------------AC-CCCCGCCCC-TG-CCACCAGAGAACAA-CC CC--TTTGACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C--TATCTCCCTTTGCTGACTCTCTTTTTGGACTCAGCCCGCTGGCACCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCACATG-----ACA-- >LTR7o_chr4_6803094668037573_3949_ZNF534_EncodeTxn_GRO2of7__chr4_6803094668031311____1365 -GTCAGGCCTCTGAGCCCAAG--------------------------------------- -----------------------------C-----------------------CTGCACA TATACATCCAGATGGC------------------------------------CTGAAGTA ACT--GAAGAATCACAAAAGAAGTGAAAATGGCT-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCA------------GAGGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCTCCCC-TGTCTGCCGGAGAACAA-CC CCC-TTTGACTATAATTTTCCACTACCTACCCA-AATCTTATAA-----------AATG- GCCCCACCC-C--TATCTCTCTTTGCTGACTCTCTTTTTGGACTCA-TCCTCCTGCACCC AGGCG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGCACATG-----ACA-- >LTR7o_chr10_122639304_122639670_EncodeTxn_SOLO_C_7old___chr10_122639304122639670___1366 TGTCAGGCCTCTGAGCCCAAG--------------------------------------- -----------------------------C-----------------------CTGCACA TATACATCCAGATGGC------------------------------------CTGAAGTA ACT--GAAGAATCACAAAACAAGTAAAAATGGCT-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC GTT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCA------------GAAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCCGCCAGAGAACAA-CC CCC-TTTGACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C--TATCTCTCTTCGCTGACTCTCTTTTTGGACTCAGCCCACCTGCACCC AGGTA-------A-TTAAAAAGCTTTATTGCTCACACAAAGCTTG--TTT--GGTGGTCT TTTCACATGGACGCACATG-----AC--- >LTR7o_chr3_44344658_44350393_3426_ZNF534_KAP1_k27ac_EncodeTxn_GRO1of7_C_7old___chr3_4435002744350393___1366 TGTCAGGCCTCTGAGCCCAAG--------------------------------------- -----------------------------C-----------------------CTGCACA TACACATCCAGATGGC------------------------------------CTGAAGTA ACT--GAAGAATCACAAAAGAAGTGAAAATGAGT-------------------------- ------------------GGTTCTTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TC--GTGAAACTTCTTCTCCTGG-------------- ----CTCA------------GAAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCTCGCCCC-TGCCCTCAAGAGAACAA-CC CCG-TTTGACTGTAATTTTTCACTACCTACCCA-AATCCTATAA-----------AACT- GCCCCACCC-C--TAACTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC AGGTG-------A-TTAAAAAGCTTTATTGCCCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGACGCACATG-----AC--- >LTR7o_chr1_210111090_210116207_2699_ZNF534_KAP1_k27ac_EncodeTxn_GRO1of7_C_7old___chr1_210115848210116207___1359 TGTCAGGCCTCTGGGCCCAAG--------------------------------------- -----------------------------C-----------------------CTGCACA TATACATCCAGATGGC------------------------------------CTGAAGTA ACT--GAAGAATGACAAAAGAAGTGAAAATGGCT-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCA------------GAAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCTCACCAGAGAACAA-CC CCT-ATTGACTATAATTTTCCACTACCCACCCA-AATCCTATAA-----------AACG- GCCC-ACCC-C--TACCTCTCTTCGCTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC AGATG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCT--------GGTGGTCT CTTCACACAGATGCACATG---------- >LTR7o_chr2_81397265_81397631_EncodeRepressed_SOLO_C_7old___chr2_8139726581397631___1366 TGTCAGGCCTCTGAGCCCAAG--------------------------------------- -----------------------------C-----------------------CTGCACA TATACATCCAGATGGC------------------------------------CTGAAGCA AGT--GAAGAATCACAAAAGAAGTGAAAATGGCC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTTCTTCTCCTGG-------------- ----CTCA------------GAAGCTCCCCAAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AG-CCCCGCCCC-TGCCCGCCAGAGAACAA-CC CCC-TTTGACTATAAATTTCCACTACCTACCCA-AATCCTATAA-----------AACG- GCCCAACCC-C--TAACTCCCTTCGCTGACTCTCTTTTTGGACTCAGCCTTCCTGCACCC AGGTG-------A-TTAAAAAGCTTTATTACTCACACAAAGCTTG--TTT--GGTGGTCT CTTCACATGGACGCGCATG-----AC--- >LTR7o_chrX_25577351_25577738_EncodeRepressed_SOLO_7old____chrX_2557735125577738____1364 ---CAAGCCTCTGAGCCCAAG--------------------------------------- -----------------------------C-----------------------CTGCAGG AATACATCCAGATGGC------------------------------------CTGAAGCA AGT--GAAGAATCACAAAAGAAGTGAAAATGGCC-------------------------- ------------------GGTTCCTGCCATAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCA------------GAAGCTCCCCAAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACCCC-TGCCCACCAGGGAACAA-CC GCC-TTTGACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AATG- GCCCCACCC-C--TATCTCCCTTCCCTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC AGGTG-------A-TTAAAAAGTTTTATTCCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCACATG-----ACA-- >LTR7bc_chr10_105727637_105733785_2329_ZNF534_k27ac_GRO5of7_GRO6of7_GRO7of7_proto7bc____chr10_105727637105728004____1366 -GTCAGGCCTCTGAGGCCAAG--------------------------------------- -----------------------------C-----------------------CTGCATG TATACATGCAGATGGC------------------------------------CTGAAGCA AGT--GAAGAATCACAAAAGAAGTGAAAATTGCT-------------------------- ------------------GTTTCTTATCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGGAATTCCTTCTCCTGG-------------- ----CTCA------------GAAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AA-CCCTGCCCC-TGCCTGCAAGAGAAAAA-CC CCC-TTTGACTATAATTTTCCATTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C--TATCTCCCTTTGCTGACTCTCTTTTTGGACTCTGCCCGCCTGCACCC AGGTG-------A-ATAAATGGCTTTATTGCTCACACAAAGCTTG--TTT--GGTGGTCT CTTCAAATGGACGTGCGTG-----ACA-- >LTR7o_chr1_192978517_192980540_981_ZNF90_KAP1_EncodeTxn_GRO5of7_GRO6of7_GRO7of7_C_7old___chr1_192980176192980540___1363 TGTCAGGCCTCTGAGCCCAAG--------------------------------------- -----------------------------C-----------------------CTGCATG TATACATACAGATGGC------------------------------------CTGAAGCA ACT--GAAGAATCACAAAAGAAGTGAAAATGGCA-------------------------- ------------------GGTTCCTGCCTTAGCAGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCA------------GAAGCTCCCGCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCTGCCAGAGAACAA-TC CCC-TTTGACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C--TATCTCCCTTTGCTGAGTC---TTTTGGACTCAGCCTGCCTGCACCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGTGCCTG-----AC--- >LTR7o_chr12_54942538_54948366_2366_1_k27ac_EncodeRepressed_chimeric_GRO5of7_GRO6of7_GRO7of7_C_7old___chr12_5494797754948366___1366 TGTCAGGCCTCTGAGCCCAAG--------------------------------------- -----------------------------C-----------------------CTGCATG TATACATCCAGATGGC------------------------------------CTGAAGCA AGT--GGAGAATCACAAAAGAAGTGAAAATGGCC-------------------------- ------------------TGTTGCTGCCTTAACAGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACT--------TT--GTGAAATTCCTTCTTCTGG-------------- ----CTCA------------GAAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACCCC-TGCCTGCCAGAGAATAA-TC CCC-TTTGACTGTAATTTTCCACTACCTACCTA-AATCCTATAA-----------AACA- GCCCCACCC-C--TATCTCCCTTTGCTGACTCTCTTTTTGGACTCAGCCTGCCTGCACCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTTGTCT CTTCACACGGACGCCCGTG-----AC--- >LTR7o_chr1_70367629_70374024_2156_ZNF534_k4me3_EncodeTxn_KLF4_wanghigh_GRO3of7_7old____chr1_7036762970368061____1388 -GTCAGACCTCTGAGCCCAAG-----------------------CA-------------- --------AAGCCATCATATCCCCTGTGAC-----------------------CTGCATG TATACATCCAGATGGC------------------------------------CTGAAGCA AGT--GAAGAATCACAAAAGAAGTGAAAAGGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAACTTCCTTCTCCTGG-------------- ----CTCA------------GAAGCTTCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCTGCCATAGAACAA--C CCC-TTTGATTGTAATTTTCCTTTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C--TATCTCCCTTCGCTGACACTCTCTTTGGACTCAGCCTGCCTGCACCT AGGTG-------A-TTAAAAAGCTTTATTGCTCACGCAAAGCCTG--TTT--GGTGGTCT CTTCAGACGGACATGCATG-----ACA-- >LTR7o_chr4_133531334_133534636_1279_ZNF534_EncodeTxn_GRO5of7_GRO6of7_GRO7of7_C_7old___chr4_133534207133534636___1362 -GTCAGGTCTCTGAGCCCAAG--------------------------------------- -----------------------------C-----------------------CTGCACA TATACATCCAGATGGC------------------------------------ATGAAGCA AGT--AAAGAATCACAAAAGAAGTGAAAATGGCC-------------------------- -------------------GTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TC--GTGAAATTCCTTCTCCTGG-------------- ----CTCA------------GAAGCTCCCCAAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCGCATC-TGCCTGCAAGAGAACAA-CC CTC-TTTGACTGTAATTTTCCACTACCCAACCA-AATCCTATAA-----------AACG- GCTCCACCC-C--TATCTCCCTTCACTGACTCTATTTTTGAACTCAGCCCACCTGCGCCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTA--TTT--GGTGGTCT CCTCACATGGATGCATGTG---------- >LTR7o_chr3_58437208_58437582_h3k27ac_weakenh_SOLO_C_7old___chr3_5843720858437582___1373 TGTCAGGTCTCTGAGCCCAAG--------------------------------------- -----------------------------C-----------------------CTGCACG TATTCATTCAGATGGC------------------------------------CTGAAGCA AGT--GAAGAATCACAAAAGAACTGAAAATGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGGT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCA------------GGAGCTCCCCGAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTTC-TGCCAGCCAGAGAACAA-AC CCC-TTTGACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCG-C--TATCTTCCTTCGCTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACATAAAGCCTA--TTT--GGTGGTCT CTTCACATGGACGCGCAT----------- >LTR7o_chr5_23421412_23421800_EncodeRepressed_SOLO_7old____chr5_2342141223421800____1388 -GTCAGGTCTCTGAGCCCAAG-----------------------CT-------------- --------AAGCCATCATATCCCCTGTGAC-----------------------CTGCCCA TATACATCCAGATGGC------------------------------------CTGAAGCA ACT--GAAGCATCACAAAAGAAGTGAAAACGGCC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AT GTT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCA------------GAAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-TCCTGCCCC-TGCCGGCCACAAAACAA--C CCG-TTTGATTGTAATTTTCCACTGCCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-T--TATCTCCCTTCGCTGACTCTCTTTTTGGACTCAGCCCACCTGCACCC AGGTG-------A-TTGAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGCGTATG-----ACA-- >LTR7o_chr3_143072320_143072752_h3k27ac_EncodeTxn_SOLO_C_7old___chr3_143072320143072752___1387 TGTCAGACCTCTGAGCCCAAG-----------------------CT-------------- --------AAGCCATCATATCCCCTGTGAC-----------------------CTGCACG TATACATCCAGATGGC------------------------------------CTGAAGCA AGT--GAAGAATCACAAAAGAAGTGAAAATGGCC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCCCCTGG-------------- ----CTCA------------GAAGCTCCCTGAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCTGGGCCC-TGCCCTCCGGAGAACAA-CT CCC-TTTGACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C--TATCTCCCTTCGCTGACTC--TTTTCGGACTCAGCCCGCCTGCACCC AGGTG-------A-TTAAAAAGCTTTATTGCTCATACAAAGTCTG--TTT--GGTGGTCT CTTCACACGAACGCGCGTG-----AC--- >LTR7o_chr4_5049354_5049738_EncodeRepressed_SOLO_C_7old___chr4_50493545049738___1384 TGCCAGGCCTCTGAGCCCAAG-----------------------CT-------------- --------AAGCCATCATAACCCCTGTGAC-----------------------CTGCACA TATACATCCAGATGGC------------------------------------CTGAAGCA ACT--GAAGAATCACAAAAGAAGTGAAAATGGCC-------------------------- ------------------TGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCA------------GAAGCTCCC-GAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCTCGCCCC-TGCCTCCCAGAGAAC----- CCC-TTTGACTTTAATTTTCCATAACCTACCCA-AATCCTATAA-----------AACT- GCCCCACCC-A--TATCTCTCTTCGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACTG AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACACGCATG-----AC--- >LTR7o_chr8_126422954_126423309_h3k27ac_enh_SOLO_NANOG_44108_C_7old___chr8_126422954126423309___1354 TGTCAGGCCTCTGAGCCCAAG--------------------------------------- -----------------------------C-----------------------CTGCACA TATACATCCAGATGGC------------------------------------CTGAAGTA ATT--GAAGAATCACAAAAGAAGTGAAAATGGCC-------------------------- ------------------GGTTCCTG---------------------------------- ------------------------------------------------------------ ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCA------------GAAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCTGCCCC-TGCCCACCAGAGAACAA-CT CCC-TTTGACTGTAATTTTCCACTGCCTACCTA-AATGCTATAA-----------AACA- GCCCTACCC-C--TATCTCCCTTAGCTGACTCTCTTTTTGGACTCAGCCTGCCTGCACCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTTACACGGACATGCGTG-----AC--- >LTR7o_chr8_111805283_111805649_h3k27ac_EncodeTxn_SOLO_7old____chr8_111805283111805649____1360 -GTCAGGCCTCTGAGCCCAAG--------------------------------------- -----------------------------C-----------------------CTGCAGG TATACATCCAGATGGC------------------------------------CTGAAGTA ACT--GAAGAATCACAAAAGAAGTAAAAATGGCC-------------------------- ------------------TGGTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGT-------------- ----CTCA------------GAAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCCACCAGAGAACAG-C- CCC-TTTGACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACA- GCCCCACTC-C--TATCTCCCTTAGCTGACTCTCTTTTCGGACTCAGCCCCCCTGCACCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--G-----CT CTTCACATGGACACGCGTG-----ACA-- >LTR7o_chr20_59472852_59473252_EncodeTxn_SOLO_C_7old___chr20_5947285259473252___1364 TATCAGGCCTCTGAGCCCAAG--------------------------------------- -----------------------------C-----------------------CTGCACG TATACATCCAGATGGC------------------------------------CTGAAGCT AGT--GAAGAATCACAGAAGAAGTGAAAATGGCC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ACT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCA------------GAAGC-CCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCCACCAGAGAACAA-CC CTC-TTTGACTGTAATTTTCCACTACCTACTCA-AATCCTATAA-----------AACG- GCCCCACCC-C--TATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTTGTCT CTTCACA-GGACACGTGTG-----AC--- >LTR7o_chrX_101964692_101965081_EncodeRepressed_SOLO_NANOG_44108_C_7old___chrX_101964692101965081___1366 TGTCAGGCCTCTGAGCCCAAG--------------------------------------- -----------------------------C-----------------------CTGCAGG TATACATCCAGATGGC------------------------------------CTGAAGCA ACT--GAAGAATCACAAAAGAAGTGGAAGTGGTC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCA------------GAAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCGGCCCC-TGCCCACCAGCGAACAA-GC CCC-TTTGACTGTAATTTTCCATTACCTACTCA-AATCCTATAA-----------AATG- GCTCCACCT-C--TATCTCCCTTCACTGACTCTCTTTTAGGACTCAGCCTGCCTGCACCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGATCT CTTCATACGGACACTGGTG-----AC--- >LTR7o_chr19_20518831_20524470_1962_1_EncodeRepressed_GRO4of7_C_7old___chr19_2052408820524470___1382 TGTCAGGCCTCTGAGCCCAAG-----------------------CT-------------- --------AAGCGATCATATCCACTGTGAC-----------------------TTGCATG TATACATCCAGATGGC------------------------------------CTGAAGTA ACT--GAAGAATCACAAAAGAAGTGAAAATGGCC-------------------------- ------------------TGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTT---CTGG-------------- ----CTCA------------GAAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CATCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCCACCAGAGAACAA-CC CCC-TTTGACGGTAATTTTCCATTACCTACCCA-AATCTTATAA-----------AATG- GCCCCACCC-C--TATTTCCCTTCGC----TCTCTTTTTGGACTCAGCCTGCCTGCACCC AGGTA-------A-TTAAAAAGCTTTATTGTTCACACGAAGCCTG--TTT--GGTGGGCT CTTCACATGGACACGCATG-----AC--- >LTR7o_chr3_59802349_59802741_h3k27ac_EncodeRepressed_SOLO_7old____chr3_5980234959802741____1388 -GTCAGGCCTCTGAGCCCAAG-----------------------CT-------------- --------AATCCATCATATCCCCTGTGAC-----------------------CTGCACG TATACATCCAGATGGC------------------------------------CTGAAGTA ACT--GAAGAATCACAAAAGAAGTGAAAATGGCC-------------------------- ------------------TGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGA-------------- ----CTCA------------GAAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCCACCAGAGAACAA-CC CCC-TTTGACTGTGATTTTCCATTACCCACCCA-AATCCTGTAA-----------AACG- GCCCCACCC-C---ATCTGCCTTCCTTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACATAAAGCCTA--TTT--GGTGGTCT CTTCACATGGACACGCGTG-----ACA-- >LTR7o_chrY_12559210_12565355_1507_1_GRO5of7_GRO6of7_GRO7of7_C_7old___chrY_1256497112565355___1384 TGTCAGGCCTCTGAGCCCAAG-----------------------CT-------------- --------AAGCCATCATATCCCCTGTGAC-----------------------ATGCACA TATACATCCAGATGGC------------------------------------CTAAAGCA AGT--GAAGAATCACAAAAGAAGTGAAAATTGCT-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTT---CTGA-------------- ----CTCA------------GAAGCTCCCCAAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACCCC-TGCCTGCCAGAGAACAA-CC CCC-TTTGACTGTAACTTTCCACGAACTACCCA-AATCCTATAA-----------AATG- GCCCCACCT-C--TATCTCCCTTTGCTGACTCTCTTTTCAGACTCAGCCCACCTGCACCC AGGTG-------A-TTAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGTGCATG---------- >LTR7o_chr8_103002078_103004589_1495_KAP1_k27ac_EncodeTxn_GRO3of7_7old____chr8_103002078103002468____1389 -GTCAGGCCTCTGAGCCCAAG-----------------------CT-------------- --------AAGCCATCATATCCCCTGTGAC-----------------------CTGCACG TATACATCCAGATGGC------------------------------------CTGAAGCA ACT--GAAGAATCACAAAAGAAGTGAAAATGGCT-------------------------- ------------------GATTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCA------------GAAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACCCC-TGCCTGCCAGAGAACAA-CC CCC-TTTGACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AATG- GCCTTATCC-C--TATTTCCCTTTGCTGACTCTCTTTTCAGACTCAGCCCACCTGCACCC AGATG-------A-TTAAAAATTTTTATTGCTCACATAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACACGCGTG-----ACA-- >LTR7o_chr6_40861398_40868767_5456_1_weakenh_GRO5of7_GRO6of7_GRO7of7_C_7old___chr6_4086833640868767___1387 TGTCAGGCCTCTGAGCCCAAG-----------------------CT-------------- --------AAGCCATCGTATCCCCTGTGAC-----------------------CTGCACG TATACGTCCAGACGGC------------------------------------CCAAAGCA AGT--AAAGAGTCACAAAAGAAGTGAAAATGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCA------------GAAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACCCC-TGCCCGCAAGGGAACAA-CC CCC-TTTGACTGTAATTTTCCGCTGCCCACCCA-AATCCCATAA-----------AACG- GCCCCATCC-A--TCTCTCCCTTTGCTGATTCTCTTTTTGCACTCAGCCTGCCTGCACCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGTCTG--TTT--GGTGGTCT CTTCACATGGACACGCATG---------- >LTR7o_chrX_87688451_87688815_EncodeTxn_SOLO_44108_7old____chrX_8768845187688815____1364 -GTCAGGCCTCTGAGCCCAAG--------------------------------------- -----------------------------C-----------------------CTGCAGG TATACATCCAGATGGC------------------------------------CCTAAGCA AGT--GAAGAATCACAAAAGAAGTGAAAATGGCC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCA------------GAAGCTCCCCCGC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTA-------------- ---------------------------AC-CCCCACCCC-TGCCAGCAAGAGAACAA-AC CCC-TTTGACTGTAATTTTCCACTACCCACCCA-AATCCTATAA-----------AACG- GCCCCACCC-C--TATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCTGCCTGCAGCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACAGAAAGCCTG--TTT--CGTGGTCT TTTCACACGGACGCGCATG-----A---- >LTR7o_chr2_84220940_84221336_EncodeRepressed_SOLO_C_7old___chr2_8422094084221336___1386 TGTCAGGCCTCTGAGCCCAAG-----------------------CT-------------- --------AAGCCATCACATCCCTTGTGAC-----------------------CTGCATG TATTCATCTAGATGGC------------------------------------CTGAAGGA AGT--GAAGAATCACAAAAGAAGGGAAAATGGCC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCA------------AAAACTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCCGCAAGAGAACAA-CC CCC-TTTGACTGTAATTTTCCACTACCCACCCA-AATCCTATAA-----------AACA- GCCCCACCC----TGTCTCCCTTCGCTGACTCTCTTTTTGGACTCAGCCCACCTGCACCC AGGTG-------A-TTAAAAAGCTTTATTGCTCAAACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGATGTGCATG---------- >LTR7o_chr2_197578410_197587726_3986_1_k27ac_TSSflanking_NANOG_chimeric_GRO1of7_7old____chr2_197578410197578776____1366 -GTCAGGCCTCTGAGCCCAAG--------------------------------------- -----------------------------C-----------------------CTGCATG TATACATCCAGATGGC------------------------------------CCAAAGTA ACT--GAAGAATCACAAAAGAAGTGAAAATGGCC-------------------------- ------------------ATTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCA------------GAAATTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCAGCCC-TGCCCGCCAGAGAACAA-CC CCC-TTTGACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACT- GCACCACCC-A--TATCTCCCTTCACTGACTCTCTTTTTGGACTCAGCCCGCCTGCACCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGATGCGCATG-----A--CA >LTR7o_chr18_38489771_38490123_weakenh_SOLO_7old____chr18_3848977138490123____1351 -GTCAGTCCTCTGAGCCCAAG--------------------------------------- -----------------------------C-----------------------CTGCACG TATACATCCAGATGGC------------------------------------CTGAAGTA ACT--GAAGAATCACAAAAGAAGTGAAAATGGCC-------------------------- ------------------GGTT-CTACCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AT ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCGTGG-------------- ----CTCA------------GGAGCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TGCCTTGTC-------------- ---------------------------AC-CCTAACCCC-TGCCTG-------------- CCC-TTTGACTGTAATTTTCCACTACCTACCCA-GATCCTATAA-----------AACG- GCCCCACCC-C--TATCTCCCTTCGCTGA--CTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTA-------A-TTTAAAAGCTTTATTGCTCACATAAAGCCTG--T-T--GGTGGTCT CTTCACACGGATGCAGGTG-----A--CA >LTR7o_chr5_163334360_163340585_3053_KAP1_EncodeTxn_GRO5of7_GRO6of7_GRO7of7_7old____chr5_163334360163334733____1364 -ATCAGGCCTCTGAGCCCAAG--------------------------------------- -----------------------------C-----------------------CGGCAGG TATACATCCAGATGGC------------------------------------CTGAGGCA ACT--GAAGAATCACAAAAGAAGTGAAAATGGCC-------------------------- ------------------GGTTTCTGCCTTAACTGAT----------------------- ---A-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TC--GTGAAATTCCTTCTCCTGG-------------- ----ATCA------------GAAGCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACCCC-TGCCTGCCAGAGAACAA--C CCC-TTTGACTGTAATTTTCCACTACCTACACA-GATCCTATAA-----------AACT- GTGCCACCC-C--TATCTCCCTTCACTGA--CTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--T-T--GGTGGTCC CTTCACACAGACGCATGTG-----A--CA >LTR7o_chr7_52332923_52339041_3493_KAP1_EncodeTxn_GRO4of7_C_7old___chr7_5233867252339041___1360 TGTCAGGCCTCTGAGCCCAAG--------------------------------------- -----------------------------C-----------------------CTGCACG TATACATCCAGATGGC------------------------------------CTGAAGCA ACT--GAAGAATCACAAAAGAAGTGAAAATGGCC-------------------------- ------------------AGTTCCTGCATTAACTGAT----------------------- ---C-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------TTC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCA------------GAAGCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------AAG----CACCTTGTG-------------- ---------------------------AC-CCCCACCCC-TGCCTGCCAGAGAACCA--C CCC-TTTGACTGT-ATTTTCCACTACATACACA-AATCCTGTAA-----------AACT- GCCCCACCC-T--TATCTGCCTTCACTGA--CTCTTTTGGGACTCAGCCCACCTGCACCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--T-T--GGTGGTCT CTTCACACAGACATACATG-----A--T- >LTR7o_chrX_94052057_94052429_EncodeTxn_SOLO_NANOG_44108_7old____chrX_9405205794052429____1360 -GTCAGGCCTCTGAGCCCAAG--------------------------------------- -----------------------------C-----------------------CTGCATG TATACATCCAGATGGC------------------------------------CTCAAAGA ACT--GAAGAATCACTAAAGAAGTGAAAATGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGC-------------- ----CTCA------------GAAGCTCCCT-GC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------AAG----CACCTTGTG-------------- ---------------------------AC-CCTCTCCCC-TGCCCGCCAGAGAACAA--C CCC-TTTGACTGTAATTTTCCATTACCTACACA-AATCCTATAA-----------AACT- GCTCCACCC-C--TATCTCCCTTCGCTGA--CTCTTTTCGGACTCAGCCCACCTGCACCC AGGTG-------A-TTAAAAAGCTTTATTGATCACAC-AAGCCTG--T-T--GGTGGTCT CTTCACATGGACGCGCGTG-----A--CA >LTR7o_chr10_118701974_118702351_h3k27ac_enh_SOLO_7old____chr10_118701974118702351____1354 -GTCAGGCCTCTGAGCCCAAG--------------------------------------- -----------------------------C-----------------------CTGCATG TATACATCCAGATGGC------------------------------------CTAACGCA ACT--GAAAAATCACAAAAGAAGTGAAAATGGCC-------------------------- ------------------GGTTTCTGCCTTAACTGAG----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATGCCTTCTCCTGG-------------- ----CTCA------------GAAGCTCCCT-GC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------GAG----CACCTTGTG-------------- ---------------------------AC-CC------C-TGCCCACCACAGAACAA--C CCC-TTTGACTGTAATTTTCCACTACCTACACA-AATCCTATAA-----------AACT- GCCCCAGCT-C---ATCTCCCTTCGCTGA--TTCTTTTCGGATTCAGCCCACCTGCACCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--T-T--GGTGGTCT CTTCACAAAGACGCCCGTG-----A--CA >LTR7o_chr4_80466_80832_EncodeTxn_SOLO_C_7old___chr4_8046680832___1364 TGTCAGGCCTCTGAGCCCAAG--------------------------------------- -----------------------------C-----------------------CTGCACG TGTACATCCAGATGGC------------------------------------CTGAGGCA ACT--GAAGAACCACAAAAGAAGTGAAAATGGCT-------------------------- ------------------GCTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCA------------GAAGCTCCCCAAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCTGTCCC-TGCCTGCCAGAGAACAA--C CCC-TTTGACTGTAATTTTCCATTACCTACCCA-AATCCTATAA-----------AACT- GCCCCACCC-C---ATCTCCCTTCGCTGACTCCTTTTTTGGACTCAGCTCGTCTGCACCC AGGTG-------A-TTAAAAAGCTTTACTGCTCACACAAAGCCCG--TTT--GGTGGTCT TTTCACACGGATGCGCATG-----A--C- >LTR7o_chr19_8203645_8204010_h3k27ac_enh_SOLO_44108_SMAD11_C_7old___chr19_82036458204010___1365 TGTCAAGCCTCCGAGTCCAAG--------------------------------------- -----------------------------C-----------------------CTGCACG TGTATTTCTAGATGGC------------------------------------CTGAAGCA ACT--GAAGAATCACAAAAGAAGTGAAAATGCCT-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCA------------GAAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CTCCGCCCC-TGCCTACCAGAGAACAA-AC CCC-TTTGACTGTAGTTTTCCACTACCTACCCA-AATCCTATAA-----------AACA- GCCTCACCC-C---ATCTTCCTTCGCTGACTCCTTTTTTGGACTCAGCCCGCCTGCACCC AGGTG-------A-TTGAAAAGCTTTACTGCTCACACAAAGCCTG--TTT--GGCGGTCT CTTCACATGGATGCGCATG-----A--C- >LTR7o_chr10_83429512_83429886_EncodeRepressed_SOLO_C_7old___chr10_8342951283429886___1364 TGTCAGTCCTCTGAGCCCAAG--------------------------------------- -----------------------------C-----------------------CTGCATG TATACATCCAGATGGC------------------------------------CTGAGGCA ACT--GAAGAACCACAAAAGAAGTGAAAATGGCT-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCA------------GAAGCTCCCCATT--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------G---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGGCTGCCAGAGAACAA-CC CCC-TTTGACTGCAATTTTCCGCTACCTGCCCA-AATCCTATAA-----------AACT- GTCTCACCC-C---ATCTCCCTTAGCTGACTCCTTTTTTGGACTCAGCCTGCCTGCACCC AGGTG-------A-GT-AAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT TTTCACGTGGATGCGTGTG-----A--C- >LTR7o_chr4_64579543_64579905_EncodeTxn_SOLO_7old____chr4_6457954364579905____1362 -GTCAGGCCTCTGAGCCCAAG--------------------------------------- -----------------------------C-----------------------CTGCTTG TATACATCCAGATGGC------------------------------------CTGAAGCA ACT--GAAGAATCACAAAAGAAGTGAAAATGGCT-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ------------------------------------------------------------ ------------------------------------------------------------ ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCA------------GAAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCCGCTGGAGAACAA-CC CCC-TTTGACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACA- GCTCCACCC-C---ATCTCTCTTCGCTGACTCCTTTTTTGGACTCAGCCCGCCTGCACCC AGGTG-------A-TTAAAAAGCTTTGTTGCTCACACAAAGCCTA--TTT--GGTGGTCT CTTCACACGGATGCGGGTA-----A--CA >LTR7o_chr11_43071243_43071597_h3k27ac_weakenh_SOLO_C_7old___chr11_4307124343071597___1344 ------------------------------------------------------------ -----------------------------C-----------------------CTGCAGG TATACATCTGGATGGC------------------------------------CTGAGGCA ACT--GAAGAACCACAAAAGAAGTGAAAATGGCC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCCAG-------------- ----CTCA------------GAAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------AAG----CACCTTGTG-------------- ---------------------------AC-CCCTGCCCT-TGTCCGCCAGAGAACAA-CC CCC-TTTGACTGTAATTTTCCACTACCTATCCA-AATACTATAA-----------AACT- GCCTCACCC-A---GTCTTCCTTTGCTGACTCCTTTTTTGGACTCAGTCTGCCTGCACTC AGGTG-------A-TTAAATAGCTTTATTGCTCACATAAAGCCTG--TTT--GGTGGTCT TTTCACACGGACTTGTGTG-----A--C- >LTR7o_chr2_166641470_166641846_EncodeRepressed_SOLO_C_7old___chr2_166641470166641846___1363 --TCAGGCCCCTGAGCCCAAG--------------------------------------- -----------------------------C-----------------------CTGCACG TATACATCCAGATGGC------------------------------------CTGAGGCA ACT--GAAGAACCACAAAAGAAGTGAAAATGGCC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GCC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCA------------GAAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------GAG----CACCATGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCTGCCAGAGAACAA-AC CCC-TTTGACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACT- GCCCCACCC-C---GTCTCCCTTTGCTGACTCCTTTTTGGGACTCAGTTGGCCTGCACCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCCG--TTT--GGTGGTCT CTTCACAGGGACATGCAGG-----A--C- >LTR7o_chr1_233471991_233472366_h3k27ac_EncodeRepressed_SOLO_7old____chr1_233471991233472366____1365 -GTCAGGGCTCTGAGCCCAAG--------------------------------------- -----------------------------C-----------------------CTGCACT TATAAATCCAGATAGC------------------------------------CTGAGGCA ACT--GAAGAACCACAAAAGAAGTGAAAATGGCC-------------------------- ------------------AGTTCTTGCCTTAACGGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTTTCCTGG-------------- ----CTCA------------GAAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCTGCCCC-TGCACGCCAGAGAACAA-TC CCC-TTTGACTGTAATTTTCCACTACCTACCCA-AATTCTATAA-----------AACT- GCCCCACCC-C---ATATCCCTTTGCTGACTCCCTTTTTGGACTCAGCCCGCCTGCACCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGTGTGTG-----A--CA >LTR7o_chr2_116520794_116521170_EncodeRepressed_SOLO_7old____chr2_116520794116521170____1365 -GTGAGGTCTCTGAGCCCAAG--------------------------------------- -----------------------------C-----------------------CTGCACA TGTACATTCAGATGGC------------------------------------CTGAGGCA ACT--GAAGAACCACAGAAGAAGTGAAAATGGGC-------------------------- ------------------AGTTCTTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AT ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TG--GTGAAATTCCTTCTCCTGG-------------- ----CTCA------------GAAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CACCTCCCC-TGCCCACCAACGGACAA-AC CCC-TTTGACTGTAATTTTCCACTACCTACCCA-AATCCTCTAA-----------AACT- GCCGCACTC-C---ATCTCCTTTTGCTGACTCCTTTTTCGGACTCAGCCCGCCTGCACGC AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTT--TTT--GGTGTTCT CTTTACACAGACGCGTGTG-----A--CA >LTR7o_chr14_20494772_20495138_h3k27ac_weakenh_SOLO_C_7old___chr14_2049477220495138___1363 TGTCAGGCGTCTGAGCCCAAG--------------------------------------- -----------------------------C-----------------------TTGCACG TGTATATCCGGATGGC------------------------------------CTGAAGCA ACT--GAAGAATCACAAAAGAAGTGAAAACAGTC-------------------------- ------------------GATTCCTTCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCA------------GAAGCTCCCCTAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACCCC-TGCCCGCCAGAGAACAA-TC CCC-TTTGACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACA- GCCCCACCC-C---ATCTCCCTTTGCTGACTCCTTTTTTGGACTCAGTCCGCCTGCACCC AGGT--------A-TTAAAAAGCTTTATTGCTCACACAAAGCCCG--T-T--GGTGGTCT CTTCACACGGACACACGTG-----A--C- >LTR7o_chr21_37988279_37988654_EncodeRepressed_SOLO_7old____chr21_3798827937988654____1365 -GTTAGGCCTCTGAGCCCAAG--------------------------------------- -----------------------------C-----------------------CTGCATG TATATATTCAGATGGC------------------------------------CTGAGCCA ACT--GAAGAACCACAAAAGAAGTGAAAATGGCT-------------------------- ------------------CATTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------GC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAACTCCTTCTCCTGG-------------- ----CTCA------------GAAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCTGCCCT-TGCCCGCCAGAGAACAA-CC CCC-TCTGACTGTAATTTTGTACTACTTACCCA-AATCCTATAA-----------AACT- GCCCCACCC-C---ATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCGCCTGCACCC AGGTG-------G-TTAAAAAGCTTTATTGCTCACACCAAGCCTG--TTT--GGTGGTCT CTTCACATGGATGGGCGTG-----A--CA >LTR7o_chr13_54211342_54211745_EncodeTxn_SOLO_7old____chr13_5421134254211745____1361 ----AGGCCTCTGAGCCCAAG--------------------------------------- -----------------------------C-----------------------CTGCACG TATACATCCAGATGGC------------------------------------CTGAGACA ACT--GAAGAACCACAAAAGAAGTGAAAATGGCC-------------------------- ------------------GATTCCTGCCTTAGCTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AT ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCA------------GAAGCCCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCTGACAGAAAACAA-C- CCC-TTTGACTGTAATTTTCCACTACCTACCCA-AATTCTATAA-----------ATCT- GCCCCACCC-C---ATCTCCCCTCCCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTG-------A-TTAAAAAGCTTTCTTGCTCACACAAAGCC-G--TTT--GGTGGTCT CTTCACACGGATGCGCTTG-----A--CA >LTR7o_chr8_9802983_9809297_2405_1_EncodeRepressed_GRO4of7_7old____chr8_98029839803343____1359 -GTCAGGCCTCTGAGCCCAAG--------------------------------------- -----------------------------C-----------------------CTGCAGG TATACATCCAGATAGC------------------------------------CTGAAGCA ACT--GAAGAATCACAAAG---GTAAAAATGGCC-------------------------- ------------------CGTTCCTGATTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TG--GTGAAACTCCTTCT-CCGG-------------- ----CTCA------------GAAGCTCTCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTCTG-------------- ---------------------------AC-CCCCGCCCC-TGCCTGCAAGAGAACAA-CT CCC-TTTGACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACT- GCCCCACCC-C--TATCTTCC-TTGCTGA--CTGTTTTCGGACTCAGCTCGCCTGCACCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCATATGGACACGCATG-----A--CA >LTR7o_chr2_215089939_215096031_3616_KAP1_EncodeRepressed_GRO5of7_GRO6of7_GRO7of7_7old____chr2_215089939215090306____1365 -GTCAGGCCTCTGAGCCCAAG--------------------------------------- -----------------------------C-----------------------CTGCCTG TATATATCCAGATGGC------------------------------------CTGAGACA ACT--GAAGAACCACAAAA---GTGAAAATGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCT-CTGG-------------- ----CTCA------------GAAGCTCTCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CTCCTTGTG-------------- ---------------------------AC-CCCTGCCCC-TGCCTGCAAGAGAACAA-CC CCC-TTTGACTGTAATTTTCCACTATCTACCCA-AATCCTATAA-----------AACT- GCCCCACCC-C--TAACTTCCTTTGCTGACTCTCTTTTCGGAATCAGCCCACCTGCACCC AGGTA-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACACGTGTG-----A--CA >LTR7o_chr5_76789188_76789562_SOLO_C_7old___chr5_7678918876789562___1363 TGTCAGGCTTCTGAGCCCAAG--------------------------------------- -----------------------------C-----------------------CTGCAAG TATACATCCAGATGGC------------------------------------CTGAAGCA ACT--GAAGAATCACAAAA---GTGAAAATGGCC-------------------------- ------------------GGTTCCCGCCTTGACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGACATTCCTTTT-CTGG-------------- ----CTCC------------AGAGCTC-CCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCAGCAAGAGAACAA-CC CCC-TTTGACTGTAATTTTCCACTACCTACTCA-AATCCTATAA-----------AACT- GCCCCACTG-C--TAACTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TT---GGTGGTCT CTTCACATGGATGCACATG-----A--C- >LTR7o_chr8_131308262_131308638_h3k4me3_TSSflanking_SOLO_NANOG_44108_SOX2_7old____chr8_131308262131308638____1363 -GTAAAGCCTCTGAGCCCAAG--------------------------------------- -----------------------------C-----------------------CTGCAGG TATACATCCAGATGGC------------------------------------CTGAAGCA ACT--GAAGAATCACAAAA---GTGAAAATGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCT-CTGG-------------- ----CTCA------------GGAGCTC-CCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCTGCAAGAGAACAA-CC CCC-TTTGACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACT- GCCCCACCC-C--TAACTCCCATTGCTGACTCTCTTTTAGGACTCAGCCCACCTGCACCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TT---GGTGGTCT CTTTACATGGATGCACAAG-----A--CA >LTR7o_chr2_98045195_98045558_EncodeTxn_SOLO_C_7old___chr2_9804519598045558___1362 TGTCAAGCCTCTGAGCCCAAG--------------------------------------- -----------------------------C-----------------------CGGCCTG TATACATCCAGATAGC------------------------------------CTGAAGCA ACT--GAAGAATCACAAAA---GTGAAAATGGCC-------------------------- ------------------GGTTCCTGACTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCT-CTGG-------------- ----CCCA------------GGAGCTC-CCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------AAG----CACCTTGTG-------------- ---------------------------AC-CCCCG-CCC-TGCCCTCAAGAGAACAA-CC CCC-TTTGACTGTAATTTTCCACTACCCACACA-AATCCTATAA-----------AACT- GCCTCACCC-C--TAGTTCCCTTTGCTGACTCTTTTTTCAGATTCAGCCCACCTGCACCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TT---GGTGGTCT CTTCACATGGACACGCATG-----A--C- >LTR7o_chr2_211261807_211267653_2647_KAP1_EncodeTxn_7old____chr2_211261807211262181____1364 -GTCAGGCCTCTGAGCCCAAG--------------------------------------- -----------------------------C-----------------------CTGCCCA TATACATCCAGATGGC------------------------------------CTGAAGCA ACT--GAAGAATCACAAAA---GTGAAAATGGCC-------------------------- ------------------AATTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTAT-CTGG-------------- ----CTCC------------GGAGGTC-CCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------GAG----CACCTTGTG-------------- ---------------------------AC-CCTCGCCCC-TGCCTGCAAGAGAACAA-CC CCC-TTTGACTATAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACT- ACCCCACCC-C--TAACTCCCTTTGCTGACTCTCTTTTCGGATTCAGCCCACTTGCCCCC AGGTG-------A-TTAAAAGGCTTTATTGCTCACACAAAGCCTG--TT---GGGGATCT CTTCACATAGACACATGTG-----A--CA >LTR7o_chrX_96841750_96842123_TSSflanking_SOLO_44108_C_7old___chrX_9684175096842123___1364 TGTCAGGCCTCTGAGCCCAAG--------------------------------------- -----------------------------C-----------------------CTGCATG TATACGTCCAGATGGC------------------------------------CTGAAATA ACT--GAAGAATCCCAAAA---GTTAAAATGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGGT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ACT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCA------------AAAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AT-CCCCGCCCC-TGCCCACAAGAGAACAA-CC CCC-TTTGACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACT- GCCCCACCC-C--TAACTCCTTTAGCTGACTCTCTTTTCGGATTCAGCCCGCCTGCACCT AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGTCTG--TTT--GGTGGTCT CTTCACAGGGACACGCATG-----A--C- >LTR7o_chrX_130277374_130280192_1506_ZNF534_EncodeTxn_GRO3of7_7old____chrX_130277374130277735____1360 ---CAGGCCTCTGAGCCCAAG--------------------------------------- -----------------------------C-----------------------CTGCATG TATACATCCAGATGGC------------------------------------CTGAAGTA ACT--AAAGAATCACAAAAGAAGTGAAAATGGCC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AT ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCT---GG-------------- ----CTCA------------GAAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCTGCTAGAGAACAA-CC TCC-TTTGACTGTAATTTTCCGCTACCTGTCCA-AATCCTGTAA-----------AACT- GCCCCACCC-C--TAACTCCCTTTACTGACTCTCTTTTCGGACTCAGCCTGCCTGCACCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCT---TTT--GGTGGTCT CTTCACATGGACGCGCATG-----A--CA >LTR7Y_chrY_Sltr_fr_1848__chrY_1620568516206051__ TGTCAGGCCTCTGAGTCTAAG--------------------------------------- -----------------------------C-----------------------CTACACG TATACATCCAGATGAC------------------------------------CTGAAGCA ACT--GAAGAATTACAAAAGAAGTGAAAATGGCC-------------------------- ------------------CGTTCCTG-TTTAACTGAT----------------------- ---A-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCA------------GGAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GTG----CACCTTGTG-------------- ---------------------------AC-CCCCACCCC-TTCCTGCAAGAGAGCAA-AC CCC-TTTGACTATAATTTTGCACTACCTACCCA-AATCCTATAA-----------AACT- GCCCCACCC-A--TAACTCTCTTTGCCAACTC-CTTTTCAGACTCAGCCTGCCTGCACCC AGGTG-------A-AAAAACAGCTTTATTGCTCACGCAAAGCCTG--TTT--AATTGTCT TTTCACACAGATGTGTGTG---------- >LTR7Y_chrY_Sltr_fr_1849__chrY_1637929216379658_+_ -GTCAGGCCTCTGAGTCTAAG--------------------------------------- -----------------------------C-----------------------CTACACG TATACATCCAGATGAC------------------------------------CTGAAGCA ACT--GAAGAATTACAAAAGAAGTGAAAATGGCC-------------------------- ------------------CGTTCCTG-TTTAACTGAT----------------------- ---A-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCA------------GGAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GTG----CACCTTGTG-------------- ---------------------------AC-CCCCACCCC-TTCCTGCAAGAGAGCAA-AC CCC-TTTGACTATAATTTTGCACTACCTACCCA-AATCCTATAA-----------AACT- GCCCCACCC-A--TAACTCTCTTTGCCAACTC-CTTTTCAGACTCAGCCTGCCTGCACCC AGGTG-------A-AAAAACAGCTTTATTGCTCACGCAAAGCCTG--TTT--AATTGTCT TTTCACACAGATGTGTGTG-----A---- >LTR7o_chr5_43797818_43798213_EncodeRepressed_SOLO_7old____chr5_4379781843798213____1363 -ATCAGGCCTCTGAGTCCAAG--------------------------------------- -----------------------------C-----------------------ATGTG-G TATATATCCAGATGGC------------------------------------CTGAAGCA ACT--GAAGAATCACAAAAGAAGCACAAATTGCC-------------------------- ------------------GGTTCCTGCTTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GCC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCA------------GAAGCTCCCCCAA--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACCCC-TGCCCTCAAGAGAACAA-CC CCC-TTTGACTGTAATTTTCCACTACCTACACA-AATCCCATAA-----------AACT- GCCCCACCC-C--TAACTCCCTTTGCTAACTG-TCTTTCAGACTCAGCCCACCTGCACCC AGGT--------A-ATAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGATGTGTGTG-----A--CA >LTR7o_chr7_22913465_22918928_2289_KAP1_EncodeTxn_GRO4of7_7old____chr7_2291346522913829____1354 -GTCAGGCCTCTGAGCCCAAG--------------------------------------- -----------------------------C-----------------------CTGCGTG TATACATCCAGATGGC------------------------------------CTGAAGCA ACT--GAAGAATCACTAAAGAAGTGAAAATGGCT-------------------------- ------------------GGTTCCCGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGACATTCCTTCTCCTGG-------------- ----CTCT------------GGAGCTCCC------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ -----------------------------------------TTGTG-------------- ---------------------------AC-CCCTGCCCC-TGCCCACAAGAAAACAA-CT CCC-TTTTACTGTAATTTTCCACTACTTACCCA-AACCCTATAA-----------AACT- GCCACACCT-C--TAACTCCTTTTGCTGACTCTCTTTTCAGACTCAGCCCACCTACACCT AGGTG-------A-ATAAACAGCTTTACTGCTCACACAACGCCTG--TTT--GCTGGTAT CTTCACACGGACACGTGTG-----A--CA >LTR7o_chr7_30479569_30485283_1724_KAP1_EncodeTxn_GRO4of7_7old____chr7_3047956930479952____1365 -GTCAGGCCTCTGAGCCCAAG--------------------------------------- -----------------------------C-----------------------CTGCATG TATACATCCAGATGGC------------------------------------CTGAAGCA ACT--GAGGAATCACAAAGGTAGTGAAAATGGCT-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCA------------GAAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACTTTGTA-------------- ---------------------------GC-CCCGGCCCC-TGCCCACCAGAGAACAA-CC CCC-TTTGACTGTAATTTTCCACTACCCACACA-AATCCTATAA-----------AGCT- ACCACACCC-C--TAACTCCCTTTGCTGACTCTTTTTTTCGACTCGGCCCACCTGCACCC AGGTG-------A-ATAAACAGCTTTATTGCTCACGCAAAGCCT---TTT--GGTGGTCT CTTCACACGGACACGTGTG-----A--CA >LTR7o_chr16_62662587_62662952_EncodeRepressed_SOLO_C_7old___chr16_6266258762662952___1361 TGGCAGGCCTCTGAGGCCAAG--------------------------------------- -----------------------------C-----------------------CTGCACA TATATATCCAGGTGGC------------------------------------CTGAAGCA ACA--GAAGAATCACAAAAGATGTGAAAATGGCT-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----ATCA------------GAAGCTCCTCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCTGCCCC-TGGCCGCAAGACAACAA-CC CCC-TTTGACTGTAATTTTCCACTACCCACCCA-AATCCTATAA-----------AACT- GCCCCACCC-C--TAACTCCCTTTGCTGACTCCTTTTGCGGACTCAGCCCACCTGCACAT GGGTG---------ATAAAAAGCTTTATGGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGACATGTG------------ >LTR7o_chr4_72173242_72173608_EncodeRepressed_SOLO_7old____chr4_7217324272173608____1365 -GTCAGGCCTCTGAGCCCAAG--------------------------------------- -----------------------------C-----------------------CTGCACG TATACGTACAGATGGC------------------------------------CTGAAGCA ACT--GAAGAATCACAAAAGAAGCAAAAATGGCT-------------------------- ------------------GGTTCCTGTCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCA------------GAAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------TC-CTCTGCCCC-TGCCCGCAAGAGAACAA-CC CCC-TTTGACTGTAATTTTCCACTAACTACTCA-AATCCTATAA-----------AGCT- GCCCCACCC-C--TGTCTCCCTTTGCTGACTCCTTTTTTGGACTCAGCCCACCTGCACCC AGGTG---------ACAGAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACCGACATGCGTG-----A--CA >LTR7o_chr17_54935084_54935436_EncodeTxn_SOLO_C_7old___chr17_5493508454935436___1351 --TCAGGCCTCTGAGCCCAAG--------------------------------------- -----------------------------C-----------------------CTGCAGG TATACATCCAGATGGC------------------------------------CTGAACCA ACT--GAAGAATCACAAAAGAAGTGAAAATGGCC-------------------------- ------------------AATTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCA------------GAAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAA----CACTTTGTG-------------- ---------------------------AC-TCCTGCCCC-TGCCCTCCAGAGAACAA-CC CCC-TTTGACTATAATTTTTCGCTACCTACCCA-AATCCTATAA-----------AACT- GCCCCACCC-C--TAACTCCCTTTGCTGACTCATTTTTTGGACTCAGCCCCCCTGCACCC AGGTG-------A-ATAAACAGCTTTATTGCTCACACAAAGCCTC--TTT--GGTGGTCT CTTCACGC--------------------- >LTR7o_chr18_58641222_58646708_1672_KAP1_EncodeRepressed_GRO4of7_C_7old___chr18_5864633758646708___1365 TGTCAGGCCTCTGTGCCCAAG--------------------------------------- -----------------------------C-----------------------CTGCACA TATACAACCAGATGGC------------------------------------CTGAAGCA ACT--GGAGAATCACAAAAGAAGTGAAAATGGCT-------------------------- ------------------GGTTCCTCCTTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCA------------GAAGCTCCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCATCCC-TGCCCGCCAGAGAACAA--C CCG-TTTGACTGTAGTTTTCCACTACCCACCCA-AATCCTGGTA-----------AACT- GCCCCACCC-C--TATCTCCCTTTGCTGATTCCTTTTTCGGACTCAGCCCCCCTGCACCC AGGTG-------A-ATAAACAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGAAGTGCATG-----A--C- >LTR7o_chr15_41285321_41285686_h3k4me3_TSS_SOLO_C_7old___chr15_4128532141285686___1364 TGTCAGGCCTCTGAGCCCAAG--------------------------------------- -----------------------------C-----------------------CTGCACG TATATATCCAGATGGT------------------------------------CTGAAGCA ACA--GAAGAATCACAAAAGAAGTGAAAATGGCC-------------------------- ------------------AGTTCCTGCCTTGACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCATCTCCTGG-------------- ----CTCA------------GAAGCACCCCCAC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACCCC-TGCCCGCAAGAACACAA-CC CCC-TTTGACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACT- GCC-CACCC-C--TAACTCCCTTTGCTGACTCCTTTTT-GGACTCAGCCCGCCTGCACCC AGGTG-------A-ATAAATAGCTTTATTACTCACACAAAGCCTG--TTT--GGTGGTCT CTTCGCACGGACGCGCCTA-----A--C- >LTR7o_chr9_35151223_35151596_EncodeRepressed_SOLO_wangmod_C_7old___chr9_3515122335151596___1364 TGTCAGGCCTCTGAGCCCAAG--------------------------------------- -----------------------------C-----------------------CTGCACC TGTACATCCAGATGGA------------------------------------CTGAGGAA ACT--GCAGAACCACAAAAGAAGTGAAAATGGCC-------------------------- ------------------AGTTCCTGACTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGG-------------- ----CTCA------------GAAGTTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACCCC-TGCCCGCAAGAGAACAA-CC CCC-TTTGAGTGTAATTTTCCACTACCTACCCA-ACTCCTATAA-----------AACT- GCCCCACCC-C--TAACTCCCTTTGCTGTCTC-TTTTTCTGACTCAGCCCACCTGCACCC AGGTG-------A-TTAAACAGTTTTTTTGCTCACACAAAGCCTG--TCT--GGTGATCT CTTCACACTGACACACTTG-----A--C- >LTR7C_chr1_2ltr_int_fr_59__chr1_2300399623004403__ TGTCAGGTCTCTGAGCACAAGCTAAGCCATTATAACCCCTGTGA---------------- -----------------------------C-----------------------CTGCACG TATACATCCAGATGGC------------------------------------CTGGAGCA AGT--GAAGAACCACAAAAGA--------------------------------------- ------------------------------------T----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATTCCACCATTGTGATTTCTTCCTACCCCAGCCCAACTAATAAATCA------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGACATTTCTCC-CCTGGACAATGAGT----- ----CTTA------------GGATTTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------CTG----CACCTGGTG-------------- ---------------------------AC-CCCCACCCC-TGCCCGCAAGAGAT-AA-CC ACT-TTTAACTGTAATTGTCCACTACCTACCCA-AATCCTATAA-----------AACT- GCCCCACCC-C--TATCTCCCTTTGTTGACTCATTTTTTGGCCTCAGCCTGCCTGCACCC AGGTG-------AAATAAACAGCTTTATTGCTTACACAAAGCCTG--TTT--GGTGATCT CTTCACATGGACGTGCGTG---------- >LTR7C_chr6_Sltr_1210__chr6_132777899132778308__ TGTCAGGCTTCTGAGCCCAAGCTAAGCCATCATAACCCCTGTGA---------------- -----------------------------C-----------------------CTGCACG TATACATCCAGATGAC------------------------------------CTGGAGCA ACT--GAAGAACCATAAAAGA--------------------------------------- ------------------------------------T----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATTCCACCATTGCGATTTGTTCCTGCCCCACCCCAACTGATCAATTG------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGACATTCCTCC-CCTGGACAATGAGT----- ----CTTA------------TGATTTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------CTG----CACCTTGTG-------------- ---------------------------TC-CCTCGCCCC-TGCCCGCAAGAGAT-AA-CC ACC-TTTAACTGTAATTTTCCATTACCTACCCA-AAGCCTGTAA-----------AACT- GCCCCAAGC-C--TATCTCACTTTGCTGACTCCTTTTTCGGACTCAGTCTGCCTGCACCC AGGT--------AATTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT GTTTACACGGACGCGTGTG-----A--C- >LTR7Y_chr4_Sltr_fr_1163__chr4_151145269151145668_+_ -GTCAGGCCTCTGAGCCCAAGCTAAGCCA---------CTGTGA---------------- -----------------------------C-----------------------CTGCACG TATACATCTGGATGGC------------------------------------CTGAAGCA GCT--GAAGAACCACAAAAGA--------------------------------------- ------------------------------------T----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATTCCACCATTGTGATTTGTTCTTGCCCCACCCCAACTAATCAATCG------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTTATGTTCCTCC-CCAGGACAATGAGT----- ----CTCC------------TGATCTCCCT-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------CTG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCCGCAAGAGAC-AA-CC CCC-TTTAACTGCAATTTTCCACTACCTACCCA-AATCCTTTAA-----------AACT- GCCCCACTC-C--TGTCTCCCTTTGCTGACTCCTTTTTTGGAATGAGCCCGCCTGCACCC AGGTG-------AAATAAACAGCCTTGTTGCTCTCACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGACGTGCGTG-----A---- >LTR7C_chr1_2ltr_int_fr_81__chr1_4285671242857150_+_ -GTCAGGCCTCTGAGCCCAGGCTAAGCCATCATAACCCCTGTGA---------------- -----------------------------C-----------------------CTGCACG TATACATCCAGATGGC------------------------------------CTGGAGCA ACT--GAAGAACCACAAAAGA--------------------------------------- ------------------------------------T----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATTCCACCATTGTGATTTGTTCCTGCCCCACCCTAACTAATGAATCA------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGACAGTCCTCC-CCTGGACAAAGAGT----- ----CTCA------------GGAGCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------GAG----CACCATGTG-------------- ---------------------------AC-CCCCACCCC-TGCCCGCAAGAGAT-AA-CC ACC-TTTAAC--TAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACT- GCCCCACCC-C--TATCTCCCTTTGCTGACTCTGTTTTTGGACTCAGCCCACTTGCACCC AAGTG-------AAATAAACAGCCTTGTTGCTCACACAAAGCCTG--TTA--GGTGGTCT CTTCACATGGATGTGCGTA-----A--C- >LTR7Y_chr11_Sltr_fr_246__chr11_6204472062045126__ TGTCAGGCCTCTGAGCCCAAGCTAAGCCATCATAACCCCTGTGA---------------- -----------------------------C-----------------------CTGCCCG TATACATCCAGATGGC------------------------------------CTGGAGCA ACT--GAAGAACCACAAAAGA--------------------------------------- ------------------------------------T----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------CC ATTCCACCCTTGTGATTTGTTCCTGCCCCACCCCAACTAATCAATCA------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGACATTCCTCC-CCTGGACAATGAGT----- ----CTCA------------TGAGCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------CTG----CCCCCTGTG-------------- ---------------------------AC-CCCCACTCC-TGCCTGCAAGAGAC-AA-CC CCC-TTTAACTGTAATTTTCCACTACCTACCCG-AATCCTATAA-----------AACT- GCCCCACCC-C---ATCTCCCTTTGCTGACTC--TTTTCTGACTCAGCCCACTTGCACCC AAGCG-------AAATAAAAAGTTTTATTGCTCACGCAAAGCCTG--TTA--GGAGGTCT CTTCACATGGAAGCGCGTG---------- >LTR7C_chr4_2ltr_int_fr_1009__chr4_154056546154056954_+_ -GTCAGGTCTCTGAGCCCAAGCTAAGCCATCATAACCCCTGTGA---------------- -----------------------------C-----------------------CTGCACG TATACATCCAGAGGGC------------------------------------CTGGAGCA ACT--GAAGAACCACAAAAGA--------------------------------------- ------------------------------------T----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATTCCACCATTGTGATTTGTTCCTGCCCCACCCCAACTAATCAATCG------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGACATTCCTCC-CCTGGAAAATGAGT----- ----CTCA------------TGATCTCCCC-AT--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------CTG----CACCTTATG-------------- ---------------------------AC-TCCTGTGGC-TGCCTGCAAGAGAT-AA-CC ACC-TTCAACTGTAATTTTCCACTATCTACCCA-AATCCTATAA-----------AAAT- GCCCCACCC-C----TCTCCCTTTGCTGACTCCTTTTTTGTACTCAGCCCACCTGCACCT AGGTG-------AT-TAAAAAGCTTTATTACTTGCACAAAGCCTG--TCT--GGTGGTCT CTTCACACGGACTCATGTG-----A--CA >LTR7C_chr9_2ltr_int_fr_1452__chr9_25096872510119_+_ -GTCAGGCCTCTGAGCCCAAGCTAAGCCATCATATCCCCTGTGA---------------- -----------------------------C-----------------------CTGCAGG TATACATCCAGAAGGC------------------------------------CTGAAGTA ACT--GAAGAACCACAAAAGA--------------------------------------- ------------------------------------T----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATCTCTCCATTGTGATTTGTTCCTGCCCCACCCTAACTGATCAATCG------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGACATTCCTTC-CCTGGACAATGAGT----- ----CTCA------------TGATCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------CTG----CACCTTGTG-------------- ---------------------------AC-CTCCACTTC-TGCCCAAAAGAGAT-AA-CC ACG-TTTAACTGTGCTTTTCCACTGCCTACCCA-AATCCTATAA-----------AACT- GCCCCGCCC-C--TATCTCCCTTTGCTGACTCCTTTTTCGTACTCAGCCCGCCTGCACCC AGGTG-------AT-TAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGACTCATGTA-----A--CA >LTR7C_chr7_2ltr_int_fr_1293__chr7_106829635106830073_+_ -GTCAGGCCTCTGAGCCCAAGCTAAGCCATCACAACCCCTGTGA---------------- -----------------------------C-----------------------TTGCATG TATACATCCAGATGGT------------------------------------CTGGAGCA ACT--GGAGAACCACAAAAGA--------------------------------------- ------------------------------------T----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATTCCACCATTGTGATTTGTTCCTGCCCCACCCTAACTAATCAATCG------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TC--GTGACATTCCTCC-CCTGGACAATGTGT----- ----CTCA------------TGATCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------CTG----CCCCTTGAG-------------- ---------------------------AC-CCCCGCCCC-TGCCCATAAGAGAT-AA-CC ACC-TTTAACTGTAATTTTCCACTACCTACCCA-AATCCTATAG-----------AACT- GCCCCACCC-C--TATCTCCCTTTGCTGACTCCTTTTTCGGACTCAGCCCACCTGCACCC AAGTG-------AA-TAAAGAGCCTCGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CCTCACACAGACGCATGTA-----A--CA >LTR7C_chr1_Sltr_36__chr1_209471561209472000__ TGTCAGGCCTCTGAGACCAAGCTAAGCCATCATAAACCCTGTGA---------------- -----------------------------C-----------------------CTGCATG TATACATCCAGATGGC------------------------------------CTGGAGCA ACT--GAAGAACCACAAAAGG--------------------------------------- ------------------------------------T----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATTTCACCATTGTGATTTGTTCCTGTCCCACCCTAACTAATCAATCG------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGACATTCCTCC-CCTGGACAATGCGT----- ----CTCA------------TGATCTTCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------CTG----CACCTAGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCCACAAGAAAG-AA-CC ACT-TTTAACTGTAATTTTCCACTGCCTACCCA-AATCCTATAA-----------AACT- GCCCCACCC-C--TATCTCCCTTTGCAGACTCCTTTTTCAGACTCAGTCCGCCTGCACCC AGGTG-------AT-TAAAAAGCTTTATTGCTCACACAAAGCCTT--TTT--GGTGGTCT CTTCACACAGACACGTGTA-----A--C- >LTR7C_chr13_Sltr_345__chr13_112799302112799699__ TGTGAGGCCTCTGAGCCCAAGCTAAG-----------CCTGTGA---------------- -----------------------------C-----------------------CTGCACA TATACACCCAGATGGC------------------------------------CTGGAGCA ACT--GAAGAACCACAAAAGA--------------------------------------- ------------------------------------T----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATTCCACCTTTGTGATTTGTTCCTGCCTCACCCCAACTAATCAATCA------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGACATTCC-CC-CCTGGACAATGAGT----- ----CTCA------------TGACCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------CTG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCCACAAGGGAT-AA-CC ACC-TTTAACTGTAATTTTCCACTACATACCCA-AATCCTATAG-----------AACT- GCCCCACCT-C--CATCTCCCTTTGCTGACTCCTTTCTCGGACTCAGCCCACTTGCATCC AAGT--------AA-TAAACAGCCTTGTTGCTCACACAAAGCCTA---TT--GGTGGTCT CTTCACATGGACGCGTGAG-----A--C- >LTR7C_chr14_Sltr_fr_395__chr14_3869978738700262__ ------GCC---------AAGCTAAGCCATCATAACCCCTGTGA---------------- -----------------------------C-----------------------CTGCATG TATACATCCAGATGGC------------------------------------CTGAAGCA ACT--GAAGAACCACAAAAGA--------------------------------------- ------------------------------------T----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATTCCACCATTGTGATTTGTTCCTGCCCCACCCTAACTAATCAATTG------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGACATCCCTCC-CCTGGACAATGAGT----- ----CTCA------------TCATCTCCC--AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------CTG----CACCTTATG-------------- ---------------------------AC-CCCCGCCCC-TGCCCACAAGAGAT-AA-CC ACC-TATAACT--AATTTTCCACTACCCACCCA-AATCCTATAA-----------AACT- GCCCCATCC-C--TATTTCCCTTTGCTGACTCCTTTCTTGGACTCAGCCCACTTGCACCC AAGT--------AA-TAAACAGCCTCATTGCTCACACAAAGCCTG---TT--GGTGGTCT CTTCACATGGATGCATGTA-----A--C- >LTR7C_chr21_Sltr_802__chr21_2027381320274221_+_ -GTCAGGCCTCTGAGCAGAAGCTAAGCCATCATAACCCCTGTGA---------------- -----------------------------C-----------------------CTGCATG TATACATCCAGACGGC------------------------------------CTGGAGCA ATG--GAAGAACAACAAAAGA--------------------------------------- ------------------------------------T----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATTCCATCATT-TGATTTGTTCCTGCCCCACCCCAACTAATCAATCG------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGACATTCCTCC-CCTGGACAATGAGT----- ----CCCA------------TGATCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------CTG----CACCTTGTG-------------- ---------------------------AC-CCCTGCCCC-TGCCCGCAAGAGAT-AA-CC AAC-TTTAACTGTAATTTTCCATTACCTACCCA-AATCCTATAA-----------AACT- GCCCCACTC-C--TATCTCCCTTTGCTGAATCCTTTCTCCGACTCAGCCCACTTGCACCC AAGT--------AA-TAAACAGCCTTGTTGCTCACACGAAGCCTG---TT--GGTGGTCT CTTCACATGGATGTGCGTG-----A--CA >LTR7C_chr15_Sltr_fr_436__chr15_2951973229520136_+_ ---CAGGGCTCTGAGCCCAGGCTAAGCCATCATATGCCCTGTGA---------------- -----------------------------C-----------------------CTGCA-G TATACATCCAGATGGC------------------------------------CTGAAGCA ACT--GAAGAACCACCAAAGA--------------------------------------- ------------------------------------T----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATTCCACCATTGTGATTTGTTCCTGCCCCACCCCAACTAATCAATCG------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TA--GTGACATTCCTCC-CCTGGACAATGAGT----- ----CTCA------------AAATCTACCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------CTG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCTGTAAGAGAT-AA-CC ACC-TTTAACTGTAATTTTCCACTACCTACCCA-AATCCTGTAA-----------AACT- GCCCCA------------------------------------CTCAGCCCACTTGCATTC AAGTA-------AA-TAAACAGCCTTGTTGCTCACACAAAGCCTG---TT--GGTGGTCT CTTCACATGGATGCGCATG-----A--C- >LTR7C_chr17_Sltr_521__chr17_6812245168122890__ TGTCAGGCCGCTGAGCCCAAGCTAAGCCATCGTAACCCCTGTGA---------------- -----------------------------T-----------------------CTGCAGG TATTCGTCCAGGTGGC------------------------------------CTGGAGCA ACT--GAAGAACCACCAAAGA--------------------------------------- ------------------------------------T----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATTCCACCATGGTGATTTGTTCCTGCCCCACCCCAACTAATCAACTG------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GCC--------TT--GTGACATTCCTCC-CCTGGACAATGAGT----- ----CTCA------------TGATCTCCCC-AT--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------CTG----CACCTTGTG-------------- ---------------------------AC-CCCTGCCC--TGTCTGCAAGAGAT-AA-CT ACC-TTTAACTGTAATTTTCCACCACCTACCCA-AATCCTATAA-----------AGCT- GCTCCACCC-C---ATCTCCCTTTGCTGACTCTCTTTGTGGACTCAGTCCACTTGCACCC AAGTG-------AA-TAAACAACCTTGTTGCTCACACAAAGCCTG---TT--GGTGGTCT CCTCACATGGACATACGTA-----A--C- >LTR7C_chr6_Sltr_1244__chr6_2812222228122646__ TGTCAGGCCTCTGA---CAAACTAAGCCATCATAGCCCCTGTGA---------------- -----------------------------C-----------------------CGCCACG TATACATCCAGATGAC------------------------------------CTGGAGCA ACT--GAAGAACCACAAAAGA--------------------------------------- ------------------------------------T----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------GC ATTCCACCATTGAGATTTGTTCCTGCCCCACCCCAACTAATCAATCG------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGACATTCCCCC-CCCCGACAGTGAGT----- ----CTCA------------TGATCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------CAG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCCACAAGAGAT-AA-CC ACC-TTTAACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACT- GCCCCACCC-C--TATCTCCCTTTGCTGACTCTCTTTTTGGACTCAGCCCACTTGCACCC AAGTG-------AA-TAAACAGCCTTGTTGCTCACACAAAGCCTG---TT--GGTGGTCT CTTCACACAGACTCACTTG-----A--C- >LTR7C_chr8_Sltr_1414__chr8_8708204087082447_+_ -GTCAGGCCTCTGAGCCCAAGCTAAGCCATCATCACCCCTGTGA---------------- -----------------------------C-----------------------TTGCACG TATACATCCAGATGAC------------------------------------CTGGAGCA ACT--GAAGAACCAC-AAAGA--------------------------------------- ------------------------------------T----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATTTCACCATTGTGATTTGTTCCTGCCCCACCCCAATTAATCAATCG------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGACATTCCCCC-C--GGACAATGAGT----- ----CACA------------TGATCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------CTG----CACCTTGTG-------------- ---------------------------AC-CCACACCCC-TGCCCGCAAGAGAT-AA-CC ACC-TTTAACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACT- GCCCCACCC-C--TATCTCCCTTTGCTGACTATTTTTTTGGACTCAGCCCACTTGCACCC AAGTG-------AA-TAAACAGCCTTGTTGCTCACACAAAGCCTG---TT--GGTGGTCT CTTCACAGGGATGTGCATG-----A--CA >LTR7C_chr17_Sltr_496__chr17_1392856613929002__ TGTCAGGCCTCTGAGCCCAAGCTAAGCCATCATAACCCCTGTGA---------------- -----------------------------C-----------------------CTGCCCG TATACATCCAGATAGC------------------------------------CTGAAGCA ACT--GAAGAATCAAAAAAGA--------------------------------------- ------------------------------------T----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATTCCACCATTGTGATTTGTTCCTGCCTCACCCTAACTAGTCAATCG------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGTATCCCT-CC-CCTGGACAATGAGT----- ----CTCA------------TGATCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GTG----CACCTTGTG-------------- ---------------------------AC-CC-TGTCCC-TGCCTGCAAGAGAT-AA-CC ACC-TTTAACTGTAATGTTCCACTGCCTACCCT-AATCCTATAA-----------AACT- GCCCCACCC-T--TATCTCCCTTTGCCCACTCCTTTTTCAGATTCAGCCCACTTGCACCC AAGTG-------AA-TAAACAGCCTCGTTGCTCACACAAAGCCTG--TTT--GGTGGTTT CTTCACACGGACGCGCGTA-----A--C- >LTR7C_chr19_Sltr_588__chr19_4255735642557790_+_ -GTCAGGCCTCTGAGCCCACGCTAAGCCATCATAA--CCTGTGA---------------- -----------------------------C-----------------------CTGCACG TATACATCCAGATGGC------------------------------------CTGGAGCA ACT--GAAGAACCACAAAAGA--------------------------------------- ------------------------------------T----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC AGTCCACCGTTGTGATTTGTTCCTGCCGCACCCTAACTAATCAATTG------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGACATTCC-CC-CCCGGACAATGAAT----- ----CTCA------------TGATCTCTCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------GTG----CACCTTGTG-------------- ---------------------------AC-CC-GCCCCC-TGCCCACAAGAGAT-AA-CT ACC-TTTAACTGTAATTTTCCACTACCTACCCA-AATCCTGTAA-----------AACT- GTCCCACCC-C--CATCTCCCTTTGCTGACTCCTTTTTCAGATTCAGCCCACTTGCACCC AAGTG-------AA-TAAACAGCCTCGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGTGCGTA-----A--CA >LTR7C_chrX_2ltr_int_fr_1533__chrX_153101038153101476__ TGTCAGGCCTCTGAGCCCAAGCTAAGCCATCATAACCCCTGTGA---------------- -----------------------------C-----------------------CTGCACA TATACATCCAGATGGC------------------------------------CTGGAGCA ACT--GAAGAACCACAAAACA--------------------------------------- ------------------------------------T----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATTCCACCATTGTGATTTGTTCCTGCCCCACCTTAACTAATCAATTG------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGACATTCCTCC-CCTGGACAATGAGT----- ----CTCA------------GGAGCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCTCCCC-TGCTAACAATAGAT-AA-AC ACC-TTTAACTGTAATTTTCCACTGCCTACCCA-AGTCCTTTAA-----------GACT- GCCCCTCTC-C--TATCTTCCTTTGCTGACTCCTTTCTCGGACTCAGCCCACTTGCACCA AAGTG-------AA-TAAACAGCCTCACTGCTCACACAAAGCCTG--TTT--GGTGGTCT GTTCACATGGACGTGTGTA-----A--C- >LTR7C_chr2_Sltr_775__chr2_94764849476913__ TGTCAGGCCTCTGAGCCCAAGCTAAGCCGTCATAA--CCTGTTA---------------- -----------------------------C-----------------------CTGCACG TATACATCCAGGTGGC------------------------------------CTGGAGCA ACT--GAAGAACCACAAAAGA--------------------------------------- ------------------------------------T----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATTCCACCATTGTGATTTGTTCCTGCCCCACCCTAACTAATCAATCG------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGGCATTCCTCC-CCTGGACAATGAGT----- ----CTCA------------GGAGCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------A---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCTCCCC-TGCTAACAATAGAT-AA-CC ACC-TTTAACTGTAATTTTCCACTACCTACCCA-AATCCTATAG-----------TACT- GCCCTA--C-C--CATCTCCCTTTGCT------CTTTTCAGACTCAGCCCACTTGCACCC AAGTG-------AA-TAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACGTGGACGCGCCTA-----A--C- >LTR7C_chr13_Sltr_360__chr13_5567154955671987__ TGTCAGGCCTCTGAGCCCAAGCTAAGCCATCATAACCCCTGTGA---------------- -----------------------------C-----------------------TTGCACG TATACATCCAGATGGC------------------------------------CTGGAACA ACT--GAAAAACCACAAAAGA--------------------------------------- ------------------------------------T----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ACTCCACCATTGTGATTTGTTCCTTCCCCACCCTAACTAATCAATCG------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGACATTCCTCC-CCTGGACAATGAGT----- ----CTCA------------GGAGTTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------GAG----CACCTTGTG-------------- ---------------------------AC-ACCCTCCCC-TGTTAACAATAGAT-AA-CC ACC-TTTAACTGTAATTTTTCACTGTCTACCCA-AGTCATATAA-----------GACT- GCCCCTCTC-C--CATCTTCCTTCGCTGACTCCTTTTTCAGACTCAGTCCCCCTGCACGC CGGTG-------AT-TAAAAAGCGTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCATGTA-----A--C- >LTR7C_chr1_Sltr_fr_34__chr1_2061228920613001_+_ -GTCAGGCCTCTGAGCCCAAGCTAAGCGGTCTTAACCCCTGTGA---------------- -----------------------------C-----------------------CTGCACA TATACATCCAGATGGC------------------------------------CTGGAGCA ACT--GAAGAACCACAAGAGA--------------------------------------- ------------------------------------T----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATTCCACCATTGTGATTTGTTCCTTCCCCACCCCAACTAACCAATCG------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGACATTCCACC-CC--GACAATGAGT----- ----CTCA------------CGGTCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------CTG----CACCGTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCCACAAGAAAC-AA-CC CCC-TTTAACTGTAATTTTCCATTACCTACCCA-AATCCTATAA-----------AACT- GCCCCACCC-T--GATCTCCCTTTGCTGACTCTCTTTGCAGACTCAGCCTGCCTGCACCC AGGTG-------AC-TAAAAAGCTTTATTACTCACACAAAGCCTG--TT---GGTGGTCT CTTTACACAGACGTGCGTG-----A--CA >LTR7C_chr14_Sltr_fr_404__chr14_5002852050028938_+_ -----GGTCTCTGAGCCTGAGCTAAGCCATCATAACCCCTATGA---------------- -----------------------------C-----------------------ATGCATG TATACATCCAGATGGC------------------------------------CTGGAGCA ACT--GAAGAACCACAAAAGA--------------------------------------- ------------------------------------T----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATTCCACCATTGTGATTTGTTCCTGCACCACCCCAACTAATCAATCG------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGACATTCCCCC-CCTGGACAGTGAGT----- ----CTCA------------TGATCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------CTG----GACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCTGCAAGAGAC-CA-CC AGC-TTTAACTGTAATTTTCCACTACCTTCCCA-AATCCTATAA-----------AACT- GCCCCACTC-C--TATCTCCCGTTGCTGACTCTTTTTTCGGACTCAGCCTGCCTGCACCC AGGTG-------AAATAAACAGCCTTGTTGCTCACACAAAC-CTG--TT---GGTGGACT CTTCACGGGGACCCACGTG-----A--CA >LTR7C_chrX_Sltr_1574__chrX_8769125787691697_+_ -GTCAGCCCTCTGAGACCAAGCTAAGCCATCATAACCCCTATGA---------------- -----------------------------C-----------------------CTGCATG TATACATCCAGATGGC------------------------------------CTGGAGCA ACT--GAAGAACCACAAAAGA--------------------------------------- ------------------------------------T----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATTCCACCATTGTGATTTGTTCCCGCCCCACCCCAACTAATCAATCG------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGATGTTCCTCC-C-TGGACCATGAGT----- ----CTCA------------TGATCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------CTG----CGCCTTGTG-------------- ---------------------------AC-TCCCGCCCC-TGCCCACAAGAGAC-AA-CC CCC-GTTAACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACT- GCCTCACTC-C--TATCTCCCTTTGCTGACTCTCTTTTCAGACTCAGCCCACTTGTACCC AAGTG-------AAATAAACAGCCTTGTTGCTCACACAAAG-CAA--CA---AGTGGTCT CTTCACATGGACACACGTG-----A--CA >LTR7C_chr11_Sltr_241__chr11_9744683697447224_+_ -GTCAGGCCTCTGAGCCCATGCTAAGTCATCATAACCCCTGTGA---------------- -----------------------------C-----------------------CTGCATG TATACATCCAGAGGGC------------------------------------TTGGAGCA ACT--GAAGAACCACAAAATA--------------------------------------- ------------------------------------T----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATTCCACCATTGTGATTTGTTCCTACCCCACCCCAACTAATCAATCG------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGACATTCCCCC-G------------------ ------------------------CTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------TTA----CGCCTTGTG-------------- ---------------------------AC-CCCCACCCC-TGCCCACAAGACGT-AA-CC ACC-TTTAACTGTAATTTTCCGCTACCTACCCA-AATCCTATAA-----------AACT- GCCCCACCC-C---ATCTCCCTTTGCTTACTCTCTTTTCAGACTCAGCCCACTTGAACCC AAGTG-------AAATAAACATCCTTGTTGCTCACACAAAGCTTG--TT---GGTGGTCT CTTCACACGGACATGCCGG-----A--CA >LTR7C_chr11_Sltr_196__chr11_32115903212029_+_ -GTCAGGCCTCTGAGCCCAAGCTAAGCTATCATATCCCCTGTGA---------------- -----------------------------C-----------------------CTGCACG TATACATCCAGATGGC------------------------------------CTGAAGCA ACT--GAAGATCCACAAAAGAAGTGAAAATAGCC-------------------------- ------------------AGTTCCTGCCTCAATTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATTCCACCATGGTGATTTGTTCCTACCCCACCCCAACTAATCAAACG------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGACATTCCTCC-CCTGGACAACGAGT----- ----CTCA------------TGATCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCTGCCCC-TGCCCGCAAGAGAA-AA-CC CTC-TTTAACTGTAATTTTCCACTACCTACTCA-AATCCTATAA-----------AACT- GCCCCACTC-C--TATCTCCCTTTGCTGACTCCTTTTTCAGACTCAGTCCACCTGCACCC AGGTG-------A-TTGAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACATGCGTG-----A--CA >LTR7C_chr11_2ltr_int_fr_206__chr11_5555943055559799_+_ -GTCAGGCCTCTGAGCCCAAG--------------------------------------- -----------------------------C-----------------------CTGCCAG TATACATCCAGATGGC------------------------------------CTGAGACA ACT--GAAGAACCACAAAAG-------AATGGCT-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------AAC--------TT--CTGACATTCCTTCTCCTGGACAATGAAT----- ----CTCA------------GGAGCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------AAG----CACCTTGTG-------------- ---------------------------AC-TCCTGCCCC-TGCCCGCAAGAGAACAA-CC CCC-TTTAACT--AATTTTCCACTACCTGCCCT-AATCCTATAA-----------AACT- GCCCCATGC-C--TTTCTCCCTTTGCTGACTC--TTTTTGGACTCAGCCCACCTGCACCC AGGTG-------A-TTCAATAGCTTTATTGCTCACACAAAACCTG--TTT--GGTAGTCT CTTCACATGGACTCACCTG-----A--CA >LTR7o_chr20_896877_901599_1450_KAP1_EncodeTxn_GRO4of7_7old____chr20_896877897229____1343 -GTCAGGACTCTGAGCCCAAG--------------------------------------- -----------------------------C-----------------------CTGCGCG TATACATCCAGATGGC------------------------------------CTGATGCA ACT--GGAGAACCACAAAAGAAGTGAAAATGGCT-------------------------- ------------------GGTTCCTGCCTTAACGGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGACATTCCTTCTCCTGG-------------- ----CTCC------------GTAGCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------AAG----CACCTTGTG-------------- ---------------------------AC-CCCTGCCCC-TGCCCGCCAGAGAACAA-CC CCC-TTTAACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACT- GCCCCATCT-C--CT-------------------TTTTCAGACTCAGTCCACCTGCACCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGT----- --TCACATGGACGTGCATG-----A--TA >LTR7C_chr12_2ltr_int_fr_288__chr12_1746989517470313_+_ -GTCAGGCCTCTGAGTCCAAGC-------------------------------------- -----------------------------------------------------CTGCACG TATGCATCCAGATGGC------------------------------------CTGAAGCA ACT--GAGGAACTGCAGGAGAGGGGAAAATAACC-------------------------- ------------------AATTCCTGCCTTGACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATTCTACCATTGTGATTTGTTCCTGCCCCACCCTAACTGATCAATTG------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACT--------TT--GTGAAATTCCTTCTCCTGGACAATGAGT----- ----ATCA------------GAAGCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------GAG----CACCTTGTA-------------- ---------------------------AC-CCCCGCCCC-TGCCCGCCAGAGAAAAA-CC CCC-TTTAACTGCAATTTTCCGCTACCTACCCA-AATCCTATAA-----------AACT- GCCCCACCC-C--TATCTTCCTTTGCTAACTCCTCTTTTGGACTCAGTCCACCTGCACCC AGGCG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCCCACGGACATGCGTG-----A--TA >LTR7C_chr10_Sltr_157__chr10_8316713583167555_+_ -GTCAGGCCTCTGAGCCCAAGC-------------------------------------- -----------------------------------------------------CTGCACA TATGCATCCAGATGGC------------------------------------CTGGAGCA ACT--GAGGAATGACAGGAGAGGTGAAAATAGCC-------------------------- ------------------AGTTCCTGCCTCGACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATTCCACCATTGTGATTTGTTCCTGCCCCACCCTAACTGATCAACTG------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------CT--GTGACATTCCTTCTCCCGGACAATGAGT----- ----ATCA------------GAAGCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------TAG----CACCTTGTA-------------- ---------------------------AC-CCCAGCCCC-TGCCCACAAGAGGAAAA--C CCC-TTTGACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACT- GCCCCACCC-T--TATCTCCCTTTGTTGACTCCTTTTTCGGACTCAGCACGCCTGCACCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTTGTTT CTTCACACAGATGCGTGTG-----A--CA >LTR7C_chr4_Sltr_970__chr4_113607395113607813_+_ -GTCAGGCCTCTGAGCCCAAGC-------------------------------------- -----------------------------------------------------CTGCAGG TACGCATTAAGATGGT------------------------------------CTGGAGCA ACT--GAGGAACCGCAGGAGAGGTGAAAATAGCC-------------------------- ------------------AGGTCCTGCCTTGACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATTCCACCATTGTGATTTGTTCCTGCCCCACCGTAACCGATCAATTG------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------CT--GTGACATTCCTTCTCCTGGACAATGAGT----- ----ATCA------------GAAGCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------GAG----CACCCTGTA-------------- ---------------------------AT-CCCTGTCCC-CGCCCGCAAGAGAAAAA-TC CCC-TTTGACTGTAATTTTCCACTACCCACCCA-AATCCTATAA-----------AACT- GTCCCACCC-C--TATCTCCCTTTGCTGACTCCTTTTTTGGACTCAGTCCACCTGCACCC AGGTG-------A-CTAAAAAGCGTTACTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGATGCGCATG-----A--CA >LTR7C_chr11_Sltr_188__chr11_23312442331664__ TGTCAGGGTTCTGAGCCCAAGC-------------------------------------- -----------------------------------------------------CTGCATG TATACATCCAGATGGC------------------------------------CTGAAGCA ACT--GAAGAACCACAAAAGAAGTGAAAGTAGAC-------------------------- ------------------AGTTGCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATTCCACCATGGTGATTTGTTCCTGCCCCACCCTAACTAATCAATTG------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCCTTCTCCTGGTCAATGAGT----- ----ATCA------------GAAGGTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------GAG----CACTTTGTA-------------- ---------------------------AC-CCCCGCCCC-TGCCCACAAAAGAAAAA-CC CCC-TTTAACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACT- GCCCCACCC-C--TATCTCCCTTTGCTGACTCCTTTTTTGGACCCAGTCTGCCTGCACCC AGGTG-------A-TTAAAAAGCTTCATTGCTCACACAAAACCTA--TTT--GGTGGTCT CTTCACACAGAGGCGCGTG-----A--C- >LTR7C_chr8_Sltr_1395__chr8_3958022439580641__ TGTCAGGCCTCTGAGCCCAAAC-------------------------------------- -----------------------------------------------------CTGGACG TATACATCCAGATGGC------------------------------------CTGAGGCA ACT--GAAGAACCACAGAAGAAGTGAAAATGGCT-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATTCCACCATTGTGATTTGTTCCTGCCCCACCCTAACTGATCAATTG------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGAAATTCTTTCTCTTGGACAATGAAT----- ----ATCA------------GAAGCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------GAG----CACCTTGTA-------------- ---------------------------GC-CTCTGCCCT-TGCCTGCAAGAGAAAAA-CC CCC-TTTGACTGTTATTTTCCACTACCTACCCA-AATCCTATAA-----------AACT- GCCCCACCC-C---ATCTCCCTTTGCTGACGCCTTTTTCAGACTCAGCCTGCCTGCACCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--CTT--GGTGGTGT CTTCACACGGATGCGCGTG-----A--C- >LTR7C_chrY_Sltr_1591__chrY_1316449313164891__ TGTCAGGCCTCTGAGCCCAAGC-------------------------------------- -----------------------------------------------------CTGTGCG TATACATCCTGATGGC------------------------------------CTGAAG-A ACT--GAAGAACCACAAAAGAAGTGAAAATGGCC-------------------------- ------------------AGTTACTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATTCCACCATTGTGATTTGTTCCTGCCCCACTCTAACTGATCAATTG------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--AT------------CCTGGACAATGAGT----- ----ATCA------------GAAGCTCCCC-AA--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTA-------------- ---------------------------GC-CTCTGCCCC-TGACCGCAAGAGGAAAA-AC CCC-TTTGACTGTAATTTTCCACTACCTACCC-------TATAA-----------GACT- GCCCTACCC-C---ATCTCCCTTTGCTGACTCCTTTTTTAGCCTCAGTCTGCCTGCACCC AAGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGTCTG--TTC--AGTGGTCT CTTCATACAGATGCACGTG-----A--C- >LTR7C_chr17_2ltr_int_fr_518__chr17_5546777355468176_+_ -GTCAGGCCTCTGAGCCCAAGCTAAGCCATCATATCCCCTGTGA---------------- -----------------------------C-----------------------CT----- ---------------------------------------------------------GCA ACT--GAAGAACCACAAAAGAAGTGAAAATAGGC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATTCCACTGTTGTGATTTGTTCCCGCCCCACCCTAACTGATCAATTG------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGACACTCCTTCTCCTGGACAGTGAGT----- ----CTCG------------GGAGCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCCACAAGAGAAAAA-GC CCC-TTTGACTGTAATTTTTCACTACCTACCCA-AATCCTACAA-----------AACT- GTCCCACTC-C--TATCTCCCTTTGCTGACTCCTTTTTTGGACTCAGTCCACCTGCACCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCC----------------T CTTCACACGGACACGTGTA-----A--CA >LTR7C_chr3_Sltr_952__chr3_8610869586109136__ TGTCAGGCCTCTGAGCCCAAGCTAAACCATCATATCCCCTGTGA---------------- -----------------------------T-----------------------CTGAACA TATACATCCAGATGAC------------------------------------CTGAAGCA ACT--GAAGAACCACAAAAGAAGTGAAAATAGGC-------------------------- ------------------AGTTCCTGCATTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATTCCACTGTTGTGATTTGTTCCTGCCCCACCCTAACTGATCAATTG------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------AAC--------TT--GTGACATTCCTTCTCCTGGACAATGAGT----- ----GTCA------------GAAGCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------AAG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCCACAAGAGAACAA-CC CCC-TTTGACTATAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACT- GCCCCACCC-C--TATCTCCCTTTGTGAACTCCTTTTTCGGACTCAGTCTGCCTGCACCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGTTCT CTTCACATGGACGCGTGTA-----A--C- >LTR7C_chr1_Sltr_10__chr1_115011328115011767__ TGTCAAGCCTCTGAGTCCAAGCTAAGGCATCATATCCCCTATGA---------------- -----------------------------C-----------------------CTGCATG TATACATCCAGATGGC------------------------------------CCAAAGCA ACT--GAAGAA-CACCAAAGAAGTGAAAATAGCC-------------------------- ------------------AGTTCCGGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATTCCACCATTGTGATTTGTTCCTGCCCCACCCTAACTGATCAATTG------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGACATTCCTTCTCCTGGACAATGAGT----- ----CTCA------------GAAGCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCCTATA-------------- ---------------------------AC-CCCCACCCC-TGTCCACAAGAGAAAAC-CC CTG-TTTGACTGTAATTTTCCACTATCTACCCA-AATCCTATAA-----------AACT- GCCCCAC-C-C--CATCTCCCTTTGCTGACTCCTTTTTTGGACTCAGTCCACCTGCACCC AGGTG-------A-TTAAAAAGCTTTGTTGCTCACATAAAGCCTG--TTT--GGTGGTCT CTTCACATGGCCAAGCATG-----T--C- >LTR7C_chr12_Sltr_244__chr12_100582022100582464__ TGTCAGGCCTCTGAGCCCAAGCTAAGCCATCATATCCCCTGTGA---------------- -----------------------------C-----------------------CTGCACG TATACATCCAGATGGC------------------------------------CTGAAGCA ACT--GAAGAACCACAAAAGAAGTGAAAATAGGC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATTCCACCATTGTGATTTGCTCCTGCCCCACCCTAATTGATCAACTG------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTCACATTCCTTCTCCTGGACAATGAGT----- ----CTCA------------GAAGTTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------AAG----CACCTTGTA-------------- ---------------------------AC-TCCGGCCCC-TGCCCGCAAGGGAAAAA-CC ACC-TTCGAC-GTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACT- GCCCACC-C-T--TATCTCCCTTTGCTGACTCCTTTTTCAGACTCAGTCCACCTGCACCC AGGTG-------A-TTGAAAAGCTTTCTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTAACATGGGCACGTGTG-----A--C- >LTR7C_chr8_2ltr_int_fr_1412__chr8_8354371583544154_+_ -GTCAG-CTTCTGAGCCCAAGCTAAGCCATCATAACCCCTGTGA---------------- -----------------------------C-----------------------CTGCACA TATACATCCAGATGGC------------------------------------CTGAAGCA ACT--GAAGAACCAAAAAAGAAGTGAA-ATAGTC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------GC ATTCCACTATTGTGATTTGTTCCTGCCCCACCCTAACTGATCAATTG------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGACATTCCTTCTCTTGGACAATGAGT----- ----CTCA------------GGAGCTCCCC-AT--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------GAG----CACCTTGTG-------------- ---------------------------GC-CCCTGCCCC-TGCCTGCAAGAGAAAAA-AC CCC-TTTGACTGTAATTTTCCACTACCTACTGA-AATCCTATAA-----------AACT- GCCCCACCC-C--TATCTCCCTTTGCTCACTCCTTTTTCGGACTCAGTCCGCCTGGACCC AGGAG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACATACATA-----A--CA >LTR7C_chr3_Sltr_949__chr3_8411548484115924__ TGTCAGGCCTCTGAGCCCCAGCTAAGCCATCATATCCCCTGTGA---------------- -----------------------------C-----------------------CTGAACA TATACATGCAGATGGC------------------------------------CTGAAGCA ACT--GAAGAACCACAAAAGAGGTGAAAATAGTC-------------------------- ------------------AGTTCCTGCCTTCACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATTACACCATTGTGATTTGTTCCTGCCCTACCCTAACTGATCAATTG------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGGCATTCCTTCTCCTTGACAGTAACT----- ----CTCA------------GGAGCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCCACAAGAGAA-CA-AC ACC-TTTGACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACT- GCCCCACTC-C--TAACTCCCTTTGCGGACTCCTTTTTCGGTCTCAGTCCTCCTGCACCC AGGTG-------A-TTAAAAAGGTTTATTGCTCACACAAAGGCTG--TTT--GGTGGTCT CTTCATGTGGACACACATA-----A--C- >LTR7C_chr12_Sltr_286__chr12_1472489114725330__ TGTCAGGCCTCTGAGCCCAAGCTAAGCCATCATATCACCTGTGA---------------- -----------------------------C-----------------------CTGCACA TATACATCCAGATGAC------------------------------------CTGAAGCA ACT--GAAGAACCACAAAAGAAGTGAAAATAGTC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ACACCACCACTGTGATTTGTTCCTGCCCCACTCTAACTGATCAATGG------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGACATTCCTTCTCCTGGACAATGAAT----- ----CTCA------------GGAGCTCCCC-AG--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACCCC-TGCCCGCAAGAGAAAAA-CC CCC-ATTAACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACT- GCCCCACCC-C--TACCTCCCTTTGCTGACTCCTTTTTC--ACTCAGTCCACCTGCACCC AGGAG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACACACGTA-----A--C- >LTR7C_chr19_Sltr_fr_614__chr19_95822039582638_+_ -GTCAGGCCTCTGAGCCGAAGCCAAGCCATCAGACTCCCTGTGA---------------- -----------------------------C-----------------------CTGCACG TATACATCCAGATGGC------------------------------------CTGAAGCA ACT--GAAGAACAACAAAAGAAGCGAAAATAGCT-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATTCCACCATTGTGATTTGTTCCTGCCCCAACCTAACTGATCAATTG------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGACATTCCTTCTCCTGGACAATGAAT----- ----CTCA------------GGAGCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AT-CCCCGCCCC-TGCCCGCAAGAGAACAA-CC TCC-TTTAACTGTAATTTTCCACTATCTACCCA-AATCCTATAA-----------AACT- GCCCGACCC-C--TATCTCCCTTTGCTGACTCCTTTTCTGAACTCAGTCTGCCTGCACCC AGGTG-------A-TTAAAAG-CTTTATTGCTCATACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACGCAC------------- >LTR7C_chr7_Sltr_1342__chr7_4676923346769677_+_ -GTCAGGCCTCTGGGCCCAAGCTAAGCCATCATATCATCTGTGA---------------- -----------------------------C-----------------------CTGCACG TATACATACAGATGGC------------------------------------CTGAAGCA ACT--GAAGAACCACAAAAGAAGCGAAAATAGCC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATTCCACCATTGTGATTTGTTCCTGCCCCACCCTAACTGATCAATTG------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TC--GTGACATTCCTTCTCCTGGACAATGAAT----- ----CTCA------------GGAGCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCTGCCCC-TGCCCACAAGAGAACAA-CC CAC-TTTAACTGTAATTTTCCACTACTTACCCA-AATCCTATAA-----------AACT- GTCCCACCC-C--TATCTCCCTTTGCCGACTCCTTTTTTGGACTCAGCCTGCCTGCACCC AGGTG-------A-TTAAAAATCTTCATTGCTCACACAAAGTCTG--TTT--GGTGGTCT CTTCACATGGACGCATAAC-----A---- >LTR7C_chr2_Sltr_705__chr2_204270464204270905__ TGTCAGGCCTCTGAGCCCAAGCTAAGCCATCATATCCCTTGTGA---------------- -----------------------------C-----------------------CTGCATA TATACATCCAGATGGC------------------------------------CTGAAGCA ACT--GAAGAACCACAAAAGAAGTGAAAATAGCC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATTCCACCATTGTGATTTGTTCCTGCCCCACCCTAACTGATCAGTTG------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGACATTCCTTCTCCTGGACAATGAAT----- ----CTCA------------GGAGCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------AAG----CACCTTGTG-------------- ---------------------------AT-CCCTGCCCC-TGCCTGCAAGAGAACAA-CC CCA-TTTAACTGTAATTTTCTGCTACCTACCCA-AATCATATAA-----------AACT- GCCCCACCT-C--TGTCTTCCTTTGCTGACTCATTTTTTGGACTCAGCCCAACTGCACCC AGGTG-------A-TTAAAAAGCTTTATTGCTCAACCAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACTCAC------------- >LTR7o_chr6_29245477_29252808_2475_KAP1_EncodeRepressed_C_7old___chr6_2925236729252808___1429 TGTAAGGCCTCTGAGACCAAGCTAAGCCATCATATCCCCTGTGA---------------- -----------------------------C-----------------------CTGCACA TATACATCCAGATGGC------------------------------------CTGAAGCA ACT--GAAGAACTACAAAAGAAGTGAAAATAGCC-------------------------- ------------------AGTTGCTGCCTTAACTTAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATTCCACCATTGTGATTTGTTCCTGCCCCACCCTAACTGATCAATTG------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------CT--GTGACATTCCTTTTCCCGG-------------- ----CTCA------------GGAGCTCCCC-AT--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGCG-------------- ---------------------------AC-TGCTGCACC-TGCATGCAAGAGAACAA-CC CCC-TTTAACTATAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACT- GCCCCACCC-C--TATCTCCCTTTGCTGACT--TCTTTTGGACTCATTCTGCCTATGCCC AGGTG-------A-TTAAGAAGCTTTATTGCTCACACAAAGCCTG--TCT--GGTGGTCT CTTCACGTGGACACACATA-----A---- >LTR7C_chr13_Sltr_365__chr13_6213174962132166_+_ -GTCAGGCCTCTACGTCCAAG--------------------------------------- -----------------------------C-----------------------CTGCACA TGTACATCCAGATGGC------------------------------------CTGAAGCA ATT--GAAGAACCACAAAAAAAGTGAA-ATAGCC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATTCCACCATTGTGATTTGTTCCTGCTCCACCCTAACTGATCAATTG------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGACATTCCTTCTCCTGGACAATGAGT----- ----CTCA------------GAATCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACTTTGTG-------------- ---------------------------AC-CCTTGCCCC-TGCCCACAAGAAAA-AA-AA CCC-TTTAACTGTAATTTTCCATTACCTACCCA-AATCCTATAA-----------AACT- GCCCCACCC-C---ATCTCCCTTTGCTGACCTCTTTTTCAGACTCAGTCCGCCTGCACCC AGGTT-------A-TTAAAAAGCTTTATTGCTCACGCAAAGCCTG--TTT--GGTGGTCT CTTCACATAGACACATGTG-----A--CA >LTR7C_chr16_Sltr_489__chr16_7841389378414334_+_ -GTCAGGCCTCTGAGCCCAAGCTGAGCCGTCATAACCCCTGTGA---------------- -----------------------------C-----------------------CTGCACA TATACATCCAGATGGC------------------------------------CTGAAGCA ACT--GAAGAACTACAAAAGAAGTGAA-ATAGCC-------------------------- ------------------AGTTCTTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATTCCATCAGTGTGATTTGTTCCTGCCCCACCCTAACTGATCAGTTG------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGACATTCCTCTTCCTGGGCAGTGAGT----- ----CTCA------------GGAGCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCTGCAAGACAA-AA-CC CCC-TTTAACTGTAATTTTCCACTACCCACCCA-AATCCTGTAA-----------AACT- GCCCTACAC-C---TTTTCCCTTTGCTGACCCCTTTTTCAAACTCCGTCTGCCTGCACTC AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACACGTGTA-----A--CA >LTR7C_chr4_Sltr_1047__chr4_2349642123496860_+_ -GTCAGGCCTCTGAGCTCAGGCTAAGCCATCATATCCCCTGTGA---------------- -----------------------------C-----------------------CTGCACG TGTACATCCAGATGGC------------------------------------CTGAAGCA ACT--GAAGAACCACAAAGGAAGTGAA-ATAGCC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATTCCACCATTGTGATTTGTTCCTGCCCCACCCTAACTGATCAGTTG------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGACGTTCCTTCTCCTGGACAATGAAT----- ----CTCA------------GGAGCTCCCC-AT--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------G---------GAG----CACCTTGTG-------------- ---------------------------GC-CCCTGCCCC-TGCCCGCAAGAGAA-AA-CC TTC-TTTAACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACT- GCCCCACCC-C---GTCTCCCTTTGCTGACTCCTTTTTTGGACTCAGTCTGCCTGCACCT AGTTT-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT TTTCACATGGACACGAATA-----A--CA >LTR7C_chr8_Sltr_1373__chr8_115709936115710372_+_ -GTCAGGCCTCTGAGCCCAAGCTAAGCCATCATATCCCCTGTGA---------------- -----------------------------C-----------------------CTGCACG TATTCATCCAGATGGC------------------------------------CTGAAGCA ACT--GAAGAACCACAAAAGAAGTGAA-ATAGCC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATTCCACCATAGTGATTTTTTCCTGCCCCACCCTAACTGATCAATTG------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGACATTCCTTCT---GGACAACGAAT----- ----CTCA------------GGAGCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------GAG----CAACTTGTG-------------- ---------------------------AC-CCCTGCCCC-TGCCCGCAAGAGAA-AA-CC CCC-TTTAACTGTAATTTTCCACTACCTACCCA-AATCGTATAA-----------AACT- GCCCCACCC-C---ATCTCCCTTTGCTGACTCCTTTTTCAGACTCAGTCTACCTGCACCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACAAAAAGCCTG--TTT--GGTGGTCT TTTCACATGTACACGTGTA-----A--CA >LTR7C_chr2_Sltr_685__chr2_175199644175200086__ TGTCAGGCCTCTGAGCCCAAGCTAAGCCATCATAACACCTGTGA---------------- -----------------------------C-----------------------CTGCACG TGTACATCCAGATGGC------------------------------------CTGAAGCA ACT--GAAGAACCACAAAAGAAGTGAA-ATAGCC-------------------------- ------------------AATTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATTCCACCATTGTGATTTTTTCCTGCCCCACCCTAACTGATCAATTG------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGACATTTCTTCTCCTGGACAATG-------- ----------------------AGCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------TC-CCCCACCGC-TGCCCGCAAGAGAA-AA-CC CCC-TTTAACTGTAATTTTCCACTAC-TACCCA-AATCCTATAA-----------AACT- GCCCTGCCC-C---AGCTCCCTTTGCTGACCCCTTTTTTGGACTCAGTCTGCCTGCACCC AGATG-------A-ATAAAAAGTTTTATTGCTCACACAAAGCCTA--TCT--GGTGGTCT CTTCACATGAATGCACATA-----A--C- >LTR7C_chr3_Sltr_926__chr3_4639296446393402__ TGTCAGGCCTCTGAGTCCAAGCTAAGCCATCATATCCTCTGTGA---------------- -----------------------------C-----------------------CTGCACA TATACATCCAGATTGC------------------------------------CTGAAGCA ACT--GAAGAACCACAAAAGAAGTGAAAATAGGC-------------------------- ------------------CGCTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATTCCACCATTGTAATTTGTTCCTGCCCCACCCCAACTGATCAATTG------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGACATTCCTT---CTGGACAGTGAGT----- ----CTCA------------GGAACTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCTGCCCT-TGCCTGCAAGAGGACAA-CC CCC-TTTAACTGTAATTTTCCATTACCTACCCA-AATCCTATAG-----------AACC- ACCCCAACC-C--TAACTCCCATTGCTGACTCCTTTTTCAGACTCAGTCTGCCTGCACCT ACATG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCATATGGATGCGCATA-----A--C- >LTR7C_chr7_Sltr_1322__chr7_146688334146688762__ TGTCAGGCCTCTGAGCCCAAGCTAAGCCATCATATCC--CGTGA---------------- -----------------------------C-----------------------CTGCACG TATACATCCAGATGGC------------------------------------CTGAAGCA ACT--GAAGAACGACAA---AAGTGAAAATAGCC-------------------------- ------------------AGTTCCTGTCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATTCCACCATTGTGATTTGCTCGTGTCCCACCTCAACTGATCAATTT------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGACACTCCTTCTCCTGGACAATGAAT----- ----CTCA------------GGA------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------------------G----CACCTTGTG-------------- ---------------------------AC-CCCTGCCCC-TGCCCACAAGAGAACAA-CC CCC-TTTAACTGTAATTTTCTACTACCTACCCA-AATTCTATAA-----------AACT- GCCCCACCC-C--TATCTCCCTTTGCTGACTCCTTTTTCAGAGTCAGTTGGCCTGCACCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TGT--GGTGGTCG CTTCACATGGATGCGCATA-----A--C- >LTR7C_chr1_Sltr_19__chr1_168865665168866103__ TGTCAGGCCTCTGAGCCCAAACTAAGCCATCATAACTCCTGTGA---------------- -----------------------------C-----------------------ATGCAAG TATACATCCAGATGGC------------------------------------CTGAAACA ACT--GAAGAACCACAAAAGAAGTGAAA-TAGCC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATTTCACTATTGTGATTTGTTCCTGCCCCACCCTAACTGATCAACTG------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------AT--GTGACATTCCTTCTCCTGGACAATGAGT----- ----CTCA------------GGAGCTCCAC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCTGCCTC-TGCCCACAAGAGAA-AA-GC CCC-TTTAACTGTGATTTTCCACTACCTACCCA-AATCCTATAA-----------AACT- GCCCTACCC-C---ATCTCCCTTTGCTGACCCCTTTTTCAGACTCAGTCCTCCTGCACCC AG-TA-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGATGTGCAGA-----A--C- >LTR7C_chr12_Sltr_306__chr12_5473620354736640_+_ -GTCAGGCCTCTGAGCCTAAGCTAAGCCATCATAACCCCTGTGA---------------- -----------------------------C-----------------------CTGCACG GATACATCCAGATGAC------------------------------------CTGAAGCA ACT--GAAGAACCACAAAAGAAGTGAAA-TAGTC-------------------------- ------------------AATTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATTCTACCACTGTGATTTGTTCCTGTCCCACCCTAACTGATCAATTG------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------AGC--------TT--GTGACATTCCTTCTCCTGGACAATGAGT----- ----CTCA------------GGAGCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACCCC-TACCCTCAAGAGAA-AA--C CCC-TTTAACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACT- GGCCCACCC-C---ATCTCCCTTTGCTGACTCCTTTTTCAGACTCAGTCTGCCTGCACCC AGGGA-------A-TCAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGCCGTCT CTTCACACAGACGTGTGTA-----A--CA >LTR7C_chr15_Sltr_fr_454__chr15_9277972092780156__ TGTCAGGCCTCTAAGCCCAAGCTAAGCCATCATAACCCCTGTGA---------------- -----------------------------C-----------------------CTGCATG TATACATCCAGATGAC------------------------------------CTGAAGCA ACT--GAAGAACCACAAAAGAAGCAAAA-TAGGC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATTCCACCCTTGTGATTTGTTCCTGCTCCACCCTAACTGAACAACTG------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TC--GTGACATTCCTTCTCCTGGAC--TGAGT----- ----CTCA------------GGAGCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------AAG----CACCTGGTG-------------- ---------------------------AC-CCCTGCCCC-TGCCCACAAGAGAA-AA--C CCC-TTTAACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACT- GGCCCACCC-C---ATCTCCCTTTGCTGACTCCTTTTTTGGACTCAGTCGGCCTGCACCC AGATG-------A-TTAAAAGGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTTACACGGACGTGCGTA-----A---- >LTR7C_chr14_Sltr_387__chr14_2179622921796666_+_ -GTCAGGCCTCTGAGCCTAAGCTAAGCCATCATAACCCCTGTGA---------------- -----------------------------C-----------------------CTGCACG TATACATCCAGATGGC------------------------------------CTGGAGCA ACT--GAAGCACCACAAAAGAAGTGAAA-TAGTC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATTCCACTATAGTGATTTGTTCCTGCCCCACCCTAACTGATCAATTG------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------AAC--------TT--GTGACATTCCTTCTCCTGGACAATGAGT----- ----CTCA------------GGAGTTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------AAA----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCCGCAAGAGAA-AA-CC CCC-TTTAACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACT- GCCCCACCC-C---ATCTCCCTTTGCTGACTCCTTTTTAGGACTTAGTCTGCCTGCACCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAACCTG--TTT--GGTGGTCT CTTCACA--GATGCGCATA-----A--CA >LTR7C_chr17_Sltr_503__chr17_4314832843148734__ TGTCAGGCCCCTGAGCCCAAGCTAAGCCATCATAA-CCCTGTGA---------------- -----------------------------C-----------------------CTGCACA TATACATCCAGATGGC------------------------------------CTGAAGCA ACT--GAAGAACCATAA---ACGTGAAA-TAGCC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATTCCACCATTGTGATTTGTTCCTGCTCCACCCTAACTGATCAATTG------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGACATTCCTTCTCCTGGACAATGAGT----- ----CTCA------------GGAGCTCCTC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------AAG----CACCTTGTT-------------- ---------------------------AC-CCCCACCCC-TGCCCACAAGAGAA-AA-CG CAC-GTTAACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACT- GCCCCACCC-C---ATCTCCTTTTGCTGACTCC--------------------------- AGGTG-------A-TTAAAAAAC--TATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGATGCGCATA-----A--C- >LTR7C_chr2_Sltr_fr_719__chr2_223462365223462801_+_ -GTCAGGCCTCTGAGCCCAAGCTAAGCCATCATAACCCCTGTGA---------------- -----------------------------C-----------------------CTGCACG TATACATCCAGATGGC------------------------------------CTGAAACA ACT--GAAGAACCACAAAAGAAGTGAAA-CAGCC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATTCCACCATTGTGATTTGTTCCTGCCCCACCCTAACTGATCAATGG------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGACATTCCTTCTCCTGGACAATGAGT----- ----CTCA------------GGAGCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------AAG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCCGCAAGAGAA-AA-CC ACC-TTTAACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACT- GGCCCACCC-C---ACCTCCCTTTGCTGACTCCTTTTTCAGACTCAGTCCACCTGCACTC AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGATGCACGTA-----A---- >LTR7C_chrX_Sltr_1556__chrX_4606701246067440_+_ -GTCAGGCCTT-----------TAAGCCATCATAACCCCTGTGA---------------- -----------------------------C-----------------------CTGCACG TATACATCCATATGGC------------------------------------CTGAAGTA ACT--GAAGAACCACAAAACAAGTGAAA-TAGCC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---A-------------------------------------------------------- ----------------------------------------------------------AC ATTCCACCATTGTGATTTGTTCCTGCCCCACCTTAACTGATAAATTG------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ATC--------TT--GTGACATTCCTTCTCCTGGACAATTAAT----- ----CTTA------------GGAGCTCTCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------AAG----CACCTTGTA-------------- ---------------------------AC-CCCTGCCCC-TGCCCGCAAGAGAA-AA-CC CCC-TTTAACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACT- GCCCTACCC-C---ATCTCCCTTTGCTGACTCCTTTTTCGGACTCAGTCCACCTGCACTC AAGTG-------A-TTAAAAAGCTTTATCGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGTTGCACGTA-----A--CA >LTR7C_chr12_Sltr_300__chr12_3906025539060695_+_ -GTCAGGCTTCTGAGCCCAAACTAAGCCATCAGATCCCCTGTGA---------------- -----------------------------C-----------------------CTGCACC TATACATCCAGATGGC------------------------------------CTGAAGCA ACT--GAAGAACCACAAAGGAAGTGAAA-TAGCT-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATTCCACCATTGTGATTTGTTCCTGCCCTGCCCTAACTGATCAATTG------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGACATTCGTTCTCCTGGACAATGAAT----- ----CTCA------------GGAGCTCCCC-AA--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------AAG----CACCTTGTG-------------- ---------------------------AC-TCCCGCCCC-TGCCAACAAGAGGACAA-CC CCC-TTTAATTGTAATTTTCCACTACCTACCCA-AATC--ATAA-----------AACT- GCCCCACCC-C---ACATCCCTTTGCTGACTCCTTTTTTGGACTCAGTCCTCCTGCACCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGATCT CTTCACACGGACGTGTGTA-----A--CA >LTR7C_chr19_Sltr_fr_556__chr19_1427595814276392_+_ ---------TCTGAGCCCAAGCTAAGCCATCATAACCCCTGTGA---------------- -----------------------------C-----------------------CTGCACG TATACATCCAGACGGC------------------------------------CTGAAGCA ACT--GAAGAACCACAAAAAAAGTGAAA-TAGTC-------------------------- ------------------AATTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATTCCACCATTGTGATTTGTTCCTGCCCCACCCTAACTGATCAATTG------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACT--------TT--GTGACATTCCTTCTCCTGGACAATGAGT----- ----CTCA------------GGAGCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCCACAAGAGAA-AA-CC CCG-TTTAACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACT- GCCCCACCC-----------CTTTGCTGACTCCTTTTTTGGACTCAGTCCGCCTGCACCC AGGTG-------A-TTAAAAAGCTTTATTGCTTACAGAAAGCCTG--TTT--GGTGGTCT CGTCATATGGACGCATGTA-----A--TA >LTR7C_chr2_Sltr_fr_677__chr2_159298190159298625_+_ ---TAGGCCTCTGAGCCCAAGCTAAGCCATCATAACCCCTGTGA---------------- -----------------------------C-----------------------CTGAGCG TATACATCCAGATGGC------------------------------------CTGAAGCA ATT--GAAGAACCACAAAAGAAGTGAAA-TAGTC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATTCCACCATTGTGATTTGTTCCCACCCCACCCTAACTGATCAATTG------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGACGTTCCTTCTCCCGGACAATGAAT----- ----CTCA------------GGAGTTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCCACAACAGAACAA-CC CCC-TTTAACTCTAGTTTTCCACTACCTACCCA-AATCCTATA--------------CT- GCCCCACCC-C---ATTTCCCTTTGCTGACTCCTTTTTCGGACTCAGTCCACCTGCACTC AAGTG-------A-TTAAAAAACTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCCAGTA-----A--CA >LTR7C_chr7_Sltr_fr_1296__chr7_111850497111850929_+_ --------CTCAGAGCCCAAGCTAACCCATCATACCCCCTGTGA---------------- -----------------------------C-----------------------CTGCACA TATATAAACAGATGGC------------------------------------CTGAAGCA ACT--GAAGAACCACAAAATAAGTGAAA-TAGTC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATTCCACCACTGTGATTTGTTCCTGCCCCACCCTAACTGATCAATTG------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGACATTCCTTCTCCTGGACAATGAGT----- ----CTCA------------GAAGCTTCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------CAG----CACCTTGTG-------------- ---------------------------AC-CCCCACCCC-TGCCCTCAAGAGAACAA-CC CCC-TTTAACTGTAATTTTCCATTATCTACCCA-AATCCCATAA-----------AACT- GCCCCACCC-----ATCTCCCTTTGCTGACTCCTTTTTCGGACTCAGTCCACCTACACCG AAGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGTGTA-----A--CA >LTR7C_chr4_Sltr_999__chr4_138112923138113342__ TGTCAGGCCTCTGAGACCAAG--------------------------------------- -----------------------------C-----------------------CTGCACG TATACATCCAGATGGC------------------------------------CTGAAACA ACT--GAAGAACCACAGAAGAAGTAAAAATAGTC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATTCCACCATTGTGATTTGTTCCTGTCCCACCCTAACTGATCAATTG------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGACATTCCTTCTCCTGGACAATGAGT----- ----CTCA------------GAAGCTCCCC-AT--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------G---------GAG----CACCTTGTG-------------- ---------------------------AC-CGCCGCCCC-TGGCCGCAAGCCAACAA-CT TTC-TTTAACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACT- GCCCCACCC-C---ATCTCCCTTTGCTGACTCCTTTTTTGGACTCAGCCCGCCTGCACCC AGGTG-------A-TTAAAAAGCTTTATTGCGCACACAAAGCCTG--TTT--GATGGTCT CTTCACCCCTACGCGCGTA-----A--C- >LTR7C_chr1_Sltr_69__chr1_246684668246685113_+_ -GTCAGACCTCTGAGGCCAAGCTAAGCCGTCATATCCCCTGTGA---------------- -----------------------------C-----------------------CCTCACG TATACATCCAGATGGC------------------------------------CTGAAGCA ACT--GAAGATCCACAGAATAAGTGAAAATAGTT-------------------------- ------------------AGTTCCTGCCTCAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATTCCACCATTGTGACTTGTTCCTGCCCCACCCTAACTGATCAATTG------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACT--------TT--GTGACATTCCTTCTCCTGGACAATGAAT----- ----CTCA------------GGAGCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C----------AG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCCGCAAGAGAAC-A-CC CCC-TTTCACTGTAATTTTCCACGACCTGCCCG-AATCCTATAA-----------AACT- GCCTCACCC-C--GATCTCCCTTTGCTGACTCCTTTTACGGACTCAGTCTGCCTGCATCC AGGTG-------A-TTAAAA-GCTTTATTGCTCACACGAAGCCTG--TTT--GGTGGTCT CTTCTCAAGGACGCGCATG-----A--CA >LTR7C_chr11_Sltr_207__chr11_5632339656323837_+_ -GTTAGGCCTCTGAGACCATGCTAAGCCATCATATCCCCTGTCA---------------- -----------------------------C-----------------------CTGCAGG TATAAATCCAGATGGC------------------------------------CTAAAGCA ACT--GAAAAACCACAAAACAAGTAAAAATAGCC-------------------------- ------------------AGTTCCTGACTTAATTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATTCCACCATTGTGATTTGTTTCTGCCCCACCCTGACTAATCAATTA------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GCGACATTCCTTCTCCTGGACAATAAGT----- ----CTCT------------GGAGCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACCCC-TGCCCACAAGAGAACAG-CC ACC-TTTAACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACT- TCCCTACCC-C--TATCACCCTTTGCTGACTCCTTTTTCAGACTCAGTCTGCCTGCACCA AGGTG-------A-TTAAAAAGCTTTATTGCTCATACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGATGCACATA-----A--CA >LTR7C_chr13_Sltr_344__chr13_111062980111063422_+_ -GTCAGGCCTCTGAGCCCACGCTAAGCCATCATATCCCCTGTGA---------------- -----------------------------C-----------------------CTACATG TATACATTCACATGGC------------------------------------CTGAAGCA CCT--GAAAAACCACAAAAGAAGTGAAAATAGCC-------------------------- ------------------AGTTTATGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATTCCACCATTGTGATTTGTTCCTGCCCCACCCTAACTGATCAATTG------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------AT--GTGACATTCCTTCTCCTGGACAATGAGT----- ----CTTA------------AGAGCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACCCT-TGCCCACAAGAGAAAAA-CC TCC-TTTAACTGTAATTTTCCACTACCTACCCA-AATCCTGTAA-----------AACT- GCCCCTCCC-C---ATCTCCCTTTGCTGACTCCTTTTTCAGACTCAGTCAGCCTGCACCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGATGCACATA-----A--CA >LTR7C_chr6_Sltr_1214__chr6_141829959141830399_+_ -GTCAGGCCTCTGAGCCCAAGTTAAGCCATCATATCCCCTGTGA---------------- -----------------------------C-----------------------CTGCATG TATACATCCAGATGGC------------------------------------CTGAAGTA ACT--GAAGAACCACAAAAGCAGTGACAATAGCC-------------------------- ------------------AATTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATTCCACCATTGTGATTTGTTCCTGCCCCACCCAAACTGATCAATTG------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGACATTCCTTCTCCTGGACAATGAAT----- ----CTC-------------AGAGCTCTCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------A---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACCCC-TGCTTGCAAGAGAAAAA-CC ACC-TTTAACTGTAATTTTCCACTACTTACCCA-AATCCTATAA-----------CACT- GCACCACCC-C--TATCTCCCTTTGCTGACTCCTTTTTCGGACTCAGGACACTTGCACCC AGGTA-------A-TTAAAA-GCTTTATTGCTCACACAAAGCCTG--TTT--GCTGGTCT CTTCAAACGGATGCACGTA-----A--CA >LTR7C_chrY_Sltr_1593__chrY_1447526414475701__ TGTCAGGCCTCTGAGCCCAAGCTAAGCCATCATAACCCCTGTGA---------------- -----------------------------C-----------------------CTGCATG TATACATCCAGATGGC------------------------------------CTGAAGCA ACT--GAAGAACCACAAAAGAAGGGAAAATAGTC-------------------------- ------------------AGTTCCTGCCTTAACTG-T----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATTTCACCATTGTGATTTGTTCCTGCCCCACCCTAACTGATCAATTG------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------AAC--------TT--GTGGTATTCCTTCTCCCAGACAATGAGT----- ----CTGA------------GGAACTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------A---------GAG----CACC-TGTG-------------- ---------------------------AC-CCCCACCCC-TGCCTGCAAGAGACAAC-CC G-C-TTTGACTGTCATTTTCCACTACCTACCCA-AATCCTAGAA-----------AACT- GCCCCACCC-C---ATCCCCCTTTGCTGACTCCTTTTTCAGACTCAGTCCACCTGCACCA AGGTG-------A-GTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACCCGCATA-----A--C- >LTR7C_chr19_Sltr_fr_608__chr19_58578335858275_+_ -GTCAGGCCTCTGAGCCCAGGCTAAGCCATTATATCCCCCGTGA---------------- -----------------------------C-----------------------CTGCATG TATACATCCAGATGGC------------------------------------CTGAAGCA GCT--GAAGAACCACAAGAGAAGTGAAAATAGCC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------TC ATTCCACCATTGTGATTTGTTCCTGTCCCACCTTTACTGATCAATTA------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACT--------TT--GTGACATTTCTTCTCCTGGACAATGAGT----- ----CTCA------------TGATCTCCCT-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------CAG----CACCTTGTG-------------- ---------------------------AC-CCCTGCCCC-TGCCCGCAAGAGATAA--CC ATC-TTTAACTGTAACTTTCCACTACCTACCTA-AATCCTGTAA-----------AACT- GACCCACCC-C--TATCTCCCTTTGCTGACTCCTTTTTCGGACTCAGCCCGCCTGCACCC AGGTG-------A-TTAAAAAGCTTTATTGTTCACATGAAGCCTG--TTT--GGTGGTCT CTTCACACAGACACGCATG-----A---- >LTR7C_chr3_Sltr_923__chr3_4633241846332857__ TGTCAGGCCTCTGAGCCCAAGCTAAGCCATCATAT-CCCCGTAA---------------- -----------------------------C-----------------------CTTCACG TGTACATCCAGATGGC------------------------------------CTGAAGAA ACT--GAAGAACCACAAAAGAAGTGAA-ATAGTG-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATTCCACCAT-GCGATTTGTTCCTGCCCCACCCCAACTGATCAATCG------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGACACTCCTTC-CCTGGATGATAAGT----- ----CTCA------------GGATTTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------CAG----CACCTTGTG-------------- ---------------------------AC-CCCCACCTC-TGCCCTCAAGAGATAA--CC ACC-TCTAACTGTAACTTTCCACTACCTACCCA-AATCTTATAA-----------AACT- GACCCACCC-C--TATCTCTCTTTGCTGACTCCTTTTTCAGACTCAGCCCACCTGCACCA AGGTG-------A-TTAAAAAGCTTTATTGATAACACAAAGCCTG--TT---GGTGGTCT CTTCACATGGATGCACATG-----A--C- >LTR7C_chr18_Sltr_fr_547__chr18_6427533164275768__ TGTCAGGCTTCTGAGCCCAAGCTAAGCCATCATATCCCCTGTGA---------------- -----------------------------C-----------------------CTGCACG TATACATCCAGATGGC------------------------------------CTGAAGCA ACT--GAAGAACCACAGAAGAAGTGAAAATAGCC-------------------------- ------------------AATTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATTCCACCACTGTGATTTGTTCCTGCCCCACCCTAATTGATCAATTG------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGATATTCCTTCTCCTGGACAATGAGT----- ----CTCA------------GGAGCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------A---------GAG----TACCTTGTG-------------- ---------------------------AC-CCCTGACCC-TGCCCGCAAGAGAACAA-CC CCC-TTTAACTGTAATTTTCTATTACCTACCCA-AATCCTATAA-----------AACT- GCCCCACCC-T--TATCTCCCTTTGCTGACTCCTTTTTCAGACTCAGTCCACCTGCACCC AGGTG-------A-TTAAAAAGCTTTATGGCTCACACAAAGCCTG--TTT--TGTGGTCT CTTCACATGGACGCGCA------------ >LTR7C_chr10_Sltr_131__chr10_1737696217377401_+_ -GTCAAGCCTCTGAGCCCAAGCTAAGCCATCATATCCCCTGTGA---------------- -----------------------------C-----------------------CTGCAGG TATACATTGAGATGGC------------------------------------CTGAAGCA ACT--GAAGAACCACAAAAGAAGTGAAAATAGCC-------------------------- ------------------AATTCCTGCCTTTACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATTCCACCATCATGATTTGTTCCTGCCCCACCCTAATTAACCAGTTG------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGACATTCCTTCTCCTGGACAGTGAAT----- ----CTCA------------GGAGCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTATG-------------- ---------------------------AC-C--TGCCCC-TGCCTGCAAGAGAAAAA-AC CCC-TTTAACTGTCATTTTCCACTACCTACCCA-AATCCTATAA-----------AACT- GCCCCACCC-C--TCTCTCCCTTTGCTGACTCCCTTTTCGGACTTGGTCTGCCTCCACCC AGGTG-------A-TTAAAAAGCTTTATTGTTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACACGCCTA-----A--CA >LTR7C_chr6_Sltr_fr_1243__chr6_2431188424312317_+_ -GTCAGGCCTCTGAGCCCAAGCTAAGCCATCATATCCCCTGTGA---------------- -----------------------------C-----------------------CTGCACA TATGCATTCAGATGGC------------------------------------CTGAAGCA ACT--GAAGAACCACAAAAGAAGTGAAAATAGCC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATTCCACCATTGTGATTTGTTCCTGCCCCACCCTAACTGACCAATTG------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGACATTCCTTCTCCTGGACAGTGAGT----- ----CTCA------------GGAGCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACCCC-CGCCTGCAAGAGAACAA-CT CCC-CTTAACTGCAATTTTCCACTACCTACCCA-AATCCTGTAA-----------AACT- GCCTCACCC-C--A-TCTCCCTTTGCTGACTCCTTTTTCGGACTCAGTCTGACTGCACCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACACG-------------- >LTR7C_chr11_Sltr_169__chr11_102911954102912394_+_ -GTCAGGCCTCTGAGCCCGAGTTAAGCCATCATATCCCCTGTGA---------------- -----------------------------C-----------------------CTGCACG AACACATCCAAATGGC------------------------------------CTGAAGCA ATT--GAAAAACCACAAAAGAAGTGAAAACAGCC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATTCCACCATAGAGATTTGTTGCTGCCCCACCCTAA-TGATCAATTG------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------TCC--------TT--GTGACATTCCTTCTCCTGGACAATGAAT----- ----CTCA------------GGAGCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCTGCCCC-TGCCCACAAGAGAACAA-TC CCC-TTTAACTGTAATTTTCCACTACCTACCCA-AATCCTGTAA-----------AGCT- GCCCCACAC-C--TGTCTCCCTTTGCTGACTCCTTTTTCGGACTCAGTCCGCCCGTACCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGCAGTCT CTTCACACGGACACGCATA-----A--CA >LTR7C_chr2_Sltr_728__chr2_2478498724785398_+_ -GTCAGGCCACTGAGCCCAAG--------------------------------------- -----------------------------C-----------------------CTGCACG TATACCTCCAGATGGA------------------------------------CTGAAGCA ACT--GAATTACCACAAAAGAAGTGAAAATAGCC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATTCCACCGTTGTGATTTGTTTCTGCCCCACCCTAACTGATCAGTTG------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGACATTCCTTCTCCTGGACAATGAGT----- ----CTCA------------GAAGCTCCTC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GGC----CACCTTGTG-------------- ---------------------------AC-CCC-------TGCCCGCAAGAGAAAAA-CC CCC-TTTAACTGTAATTTGCCACTACCTACCCA-A-TCCTATAA-----------AACT- GCCCCACCC-C--TATCTCCCTTTGCAGACTCCTTTTGCGGACTCCGTCTGCCTGCACCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACAGGGATGTGTGTG-----A--CA >LTR7o_chrX_7110567_7111001_h3k27ac_EncodeRepressed_SOLO_C_7old___chrX_71105677111001___1362 TGTCAGGCCTCTGAGCCCAAG--------------------------------------- -----------------------------C-----------------------CTGCACG TATACATCCAGATGGC------------------------------------CTGAAGCA ACT--GAAAAACCACA----AAGTGAAAATAGCC-------------------------- ------------------ACTTCCTGCCTTAATGGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ACT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGACACTCCTTCTCCTGG-------------- ----CTCA------------GAAGCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACCCC-TGCCCGCAAGAGAACAA-CC CCC-TTTAACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACT- GCCGCACCC-C--TATCTCCCTTTGCTGACTCCTTTTTCGGACTCAGTCTGCCTGTACCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACAGGGCTGCATGTA-----A--C- >LTR7C_chr8_Sltr_fr_1416__chr8_8975583989756273_+_ -GTCAGGCCTCTGAGCCCAAGCTAAGCCATCATATACCCTGTGA---------------- -----------------------------C-----------------------CTGCACG TATACATCCAGATGGC------------------------------------CTGAAGCC ACT--GAAGAACCACAA---AAGTGAAAATAGCC-------------------------- ------------------AGTTCCTACCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATTCCACGATTGCGATTTGTTCCTGCCCTTCCCTAACTGATCAATGG------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGACACTCCTTCTCCTGGACAATGAGT----- ----CTCA------------GGAGCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACCCC-TGCCCGCAAGAGAAAAA-CC CCC-TTTAACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACT- GCCTCACCC-C--TATCTCCCTTTGCTGACTCCTTTTTCGAACTAAGTCGGCCTACACCC ACATG-------A-TT-AAAAGCTTTATTGCTCACCCAAAGCCTG--TTT--GGTGGTCT CTTCACACTGACGCGCGT----------- >LTR7C_chr16_Sltr_fr_472__chr16_3160905731609479_+_ ---CAGGCCTCTGAGCTCAAG--------------------------------------- -----------------------------C-----------------------CTGCATG TATACATCTAAATGGC------------------------------------CTGAAGCA ACT--GAAGAACCACAAAAGAAGTGAAAATAGTC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATTCCACCATTGTGATTTGTTCCTGCCCCACCTTAACTGATCAATTA------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGACATTCCTTCTCCTAGACAATGAGT----- ----CTCA------------GAACTTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------AAG----CACCTTGTA-------------- ---------------------------AC-CCCTGCCCC-TGCCCGCAAGAGAATAA-CC CCC-TTTAACTGTAATTTTCCACTACCTACCCA-AATCCTGTAA-----------AACT- GCCCCACTC-C---ATCTCCCTTTGCTGACTCCTTTTTCGGACTCAGTCTGCCTGCACCC AGGTG-------A-TTAAAAAGCTTTATTACTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGACGCACATG-----A--CA >LTR7C_chrX_Sltr_1575__chrX_9070465090705091_+_ -GTCAGGCATCTGAGCCCAAGATAAGCCATCATATCCCCTGTGA---------------- -----------------------------C-----------------------CTGCATA TATACATCCAGATGGC------------------------------------CTGAAGCA ACT--GAAGAATCACAAAAGAAGTGAAAATAGTC-------------------------- ------------------AGTTCCTGCCTTAACTGTT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ACTCCACCATTGTGATTTGTTCCTGCCCCACCCTAACTGATCAATTA------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGACATTCCTTCTCCTAGACAATGAGT----- ----CTCA------------GAACCTCCTC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAA----CACCTTGTA-------------- ---------------------------AC-CCCTGCCTC-TGCCTGCAAGAAAATAA-CC TCC-TTTAACTATAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACT- GCCCCACCC-C---ATCTCCCTTTGCTGACTCCTTTTTTGGACTCAGTCCGCCTTCACCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAGAGCCTG--TTT--GGTGGTCT CTTCGCATGGATGCACATG-----A--CA >LTR7C_chrY_Sltr_fr_1609__chrY_42868114287250_+_ ---CAGGCATCTGAGCCCAAGATAAGCCATCATATCCCCTGTGA---------------- -----------------------------C-----------------------CTGCATA TATACATCCCGATGGC------------------------------------CTGAAGCA ACT--GAAGAATCACAAAAGAAGTGAAAATAGTC-------------------------- ------------------AGTCCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ACTCCACCATTGTGATTTGTTCCTGCCCCACCCTAACTGATCAATTA------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGACATTCCTTCTCCTAGACAATGAGT----- ----CTCA------------GAACCTCCTC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAA----CACCTTGTA-------------- ---------------------------AC-CCCTGCCTC-TGCCTGCAAGAAAATAA-CC CCC-TTTAACTATAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACT- GCCCCACGC-C---ATCTCCCTTTGCTGACTCCTTTTTTGGACTCAGTCCGCCTTCACCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAGAGCCTG--TTT--GGTGGTCT CTTCGCATGGATGCACATG-----A--CA >LTR7C_chr5_Sltr_1163__chr5_60921396092575__ TGTCAGGCCTTTGAGCCCAAGCTAAGCCATCATATCCCCTGTGA---------------- -----------------------------C-----------------------C-GCACG TATACATCCAGATGGC------------------------------------CTGAAGCA GCT--GAAGAATCACAAAAGAAGTGAAAATAGTC-------------------------- ------------------AGTTTCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATTCCACCATTGTGATTTGTTCCTGCCCCAACCTAACTGATCAATTA------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--ATGACATTCCTT---CTAGACAATGAGT----- ----CTCA------------GAACCTCTCC-GC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------AAG----CACCTTGTG-------------- ---------------------------AT-CCCTGCCCC-TGCCCACAAGAGAAAAA-CC CCC-TTTAACTGTAATTTTTCACTACCCACCCA-AATCCTATAA-----------AACT- GCCCCACCC-C---ATCCCCCTTTGCTGACTCCTTTTTCGGACTCAGTCTGCCTGCACCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACACA-AGCCTG--TTT--GGTGGTCT CTTCACATGGACAAGCGTG-----A--C- >LTR7C_chrX_Sltr_1499__chrX_113122402113122837__ TGTCAGGCCTCTGAGCCCAAGCTAAGCCATCATATCCCCTGTGA---------------- -----------------------------C-----------------------CTGCACG TGTATATCCAGATGGC------------------------------------CTGAAGCA ACT--GAAGAATCACAAAAGAAGTGAAAATAGCC-------------------------- ------------------AGTTCCTGCCTTAAGCGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------GC ATTCCACCATTGCTGTTTGTTCCTGCTCCACCCTAACTG----ATTA------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGACATTCCTTCTCCTAGACAATGAGT----- ----CCTA------------GAACCACAAC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------AAG----CACCTTGTG-------------- ---------------------------AC-CCCTGCCCC-TGCCCGCAAGAGAATTA-CC CCC-TTTAACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACT- GCCCCACCG-C---ATCTCCCTTTGCTGACTCCTTTTTCAGACTCAGCCTGCCTGCACCC GGGTG-------A-TTAAAAAGCTTTATTGCTCACCCAAAGCCTG--TTT--GGTGGTCT CTTCACAT-GAGGCACATG-----G--C- >LTR7C_chr5_Sltr_fr_1118__chr5_130374023130374461_+_ ---CAGGCCTCTGAGCCCAAGCTAAGCCATCATATCCCCTGTGA---------------- -----------------------------C-----------------------CTGCACA TATACATCCAGATGGC------------------------------------CTCAAGCA ACT--GAAGAATCACAAAAGAAGTGAAAATAGCC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATTCCACCATTGCGATTTGTTCCTGCCCCACCCTAACTGATCAATTA------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGACATTCCTTCTCCTAGACAATGAGT----- ----CTCA------------GAACCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----TACCTTGTA-------------- ---------------------------AC-CCCCATCCC-CGCTCACAAGAGAATAA-CC CCC-TTTAACTGTGATTTTCCACTACCTACCCA-AATCCTATAA-----------AACT- GTCCCACCC-C---ATCTCCCTTTGCTGACTCCATTTTCGGACTCAGTCCGCCTGCACCC AGGTG-------A-GTAAAAAGTTTTATTCCTCACACAAAGCCTT--TTT--GGTGGTCT CTTCACATGGACGCACATG-----A--CA >LTR7C_chr5_Sltr_1182__chr5_9844089598441337_+_ -GTCAGGCCTCTGAGCTGAAGCTAAGCCATCATATTCCCTGTGA---------------- -----------------------------C-----------------------CTGCACA TATACATCCAGATGGC------------------------------------CTGAAGCA ACC--AAAGAACCACAAAAGAAGTGAAAATAGGC-------------------------- ------------------AGTTCCTGCCTTAATTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATTCCACCACTATGATTTGTTCCTACCCCACCTTAAATGATCAGTTA------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGACATTCCTTCTCCTGGACAATGAAT----- ----CTCA------------GGAGCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------AAG----CACCTTGTG-------------- ---------------------------AC-CCCCACCCC-TGCCCCCAAGATAACAA-CC CCC-TTTAACTATAATTTTCCGCTACCTAACCA-AATCCTATAA-----------AACT- GCCCCACCC-C--TATCTCCCTTTGCTGACTCCTTTTTCAGACTCAGTCTGCCTGCACTC AGGTG-------A-TTAAAAAGATTTATTGTTCACACAAAGCCTG--TTT--GGTGGTCT CTCCACATGGATGCACATG-----A--CA >LTR7C_chrY_Sltr_fr_1588__chrY_1195212711952678__ TGTCAGGCCTCTGAGCACAAGCTAAGCCATCATATCCCCTTTGA---------------- -----------------------------C-----------------------CTGCACA TATAAATCCAGATGGC------------------------------------CTGAAGCA ACT--AAGAAACCACAAAAGAAGTGAAAATGGCC-------------------------- ------------------AGTTCCTGCCTTAACTGAG----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATTCCACCATTGTGATTTGTTCCTGCCCCACCCTGACTGATCAGTTA------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGGCATTCCTTTTTCTGGAAAATGAGT----- ----CTCA------------TTATCTCCCC-AT--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------GAG----TACCTTGTG-------------- ---------------------------AC-CCCTGCCCC-TGCCTGCAAGAGAACAA-CC CCC-TTTAACTGTAATTTTCCACTACTTTCCCA-AATCCTATAA-----------AACT- GTCCCACCC-C--TATGTCCCTGTGCTGACTCCTTTTTCAGATTCAGCCCACCTGAACCC AGGTG-------A-TTAAAGAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACTCATGTA-----A--C- >LTR7C_chr5_Sltr_1122__chr5_136382885136383310_+_ -GTCAGGCCTCTGAGCCCAAG--------------------------------------- -----------------------------C-----------------------CTGCATG TATTCATCCAGATGGC------------------------------------CTGAGGCA ACC--GAAGAACCACAAAAGCAGTGAAAATGGCC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATTCCTCCATTGTGATTTGTTTCTGCCCCACCTCAACTGATCAATTA------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGACATTCCTTCTCCTAGAAAATGAGT----- ----CTCA------------GAACTTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACATTGTG-------------- ---------------------------AC-ACCCGCCCC-TGCCCGCAAGAGAAAAA-CC CCC-TTTGACTGTAATTTTCCACTACCTACCCA-AATACTATAA-----------AACT- GCCCCACCC-C--TATCTCCCTTCAATGACTCTTTTTTCGGACTCAGTCTGCTTGCACCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTTGTCT CTTCACAAGGATATGCGTG-----A--CA >LTR7C_chrX_Sltr_fr_1564__chrX_697039697420__ TGTCAGGCCTCTGAGCCCAAG--------------------------------------- -----------------------------C-----------------------CTGCACA TATATCTCCACATGGC------------------------------------CTGAAGCA ACT--GAAGAACCAGAAAAGAAGTGAAAATGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACG--------TT--GTGACATTCCTTCTCCTTAA------------- -----TCT------------GGGCCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCTG-AAGAGAATAA-CC CCC-TTTGACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACT- GCCCCACCT-C--TATCTCCCTTTGCTGACTCCTTTTTCAGAC--------CCTGCACCC AGGTG-------A-TTAAAAAGCCT----------------------------------- ----------------------------- >LTR7C_chrY_Sltr_fr_1614__chrY_697039697420__ TGTCAGGCCTCTGAGCCCAAG--------------------------------------- -----------------------------C-----------------------CTGCACA TATATCTCCACATGGC------------------------------------CTGAAGCA ACT--GAAGAACCAGAAAAGAAGTGAAAATGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACG--------TT--GTGACATTCCTTCTCCTTAA------------- -----TCT------------GGGCCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCTG-AAGAGAATAA-CC CCC-TTTGACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACT- GCCCCACCT-C--TATCTCCCTTTGCTGACTCCTTTTTCAGAC--------CCTGCACCC AGGTG-------A-TTAAAAAGCCT----------------------------------- ----------------------------- >LTR7Y_chr19_Sltr_fr_669__chr19_3560459635604970_+_ -GTCAGGTGTCTGAGCCCAAG--------------------------------------- -----------------------------C-----------------------CTGCATG TATACATCCAGATGGC------------------------------------CTGAGGCA ACT--GAAGAACCACAAAAAAAGTGAAAATGGCC-------------------------- ------------------AGCTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGACATTCCTTCTCCTGGA------------- -----TCC------------GGAGCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCTGCAAGAGAACAA-CC CCC-TTTAACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACT- GCCTCACTC-C--TATCTCCCTTTGCTGACTCCTTTTTCGGACTCAGTCCGCCTGCACCC AGGTG-------A-TTAAAAAGCTTTACTGCTCACACAAAGCCTG--TTT--GATGGTCT CTTCACACGGACGCACGTG-----A---- >LTR7o_chr10_17385379_17385754_h3k27ac_EncodeTxn_SOLO_C_7old___chr10_1738537917385754___1364 TGTCAGGCTTCTGAGCCCAAG--------------------------------------- -----------------------------C-----------------------CTGCACT TATACATCCAGATGGC------------------------------------CTGAGGCA ACT--GAAGAACCACAAAAGAAGTGAAAATAGCC-------------------------- ------------------AGTTCCTACCTTTACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGACATTCCTTCTCCTGG-------------- -----TCC------------AGCTCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------AAG----CACCTTGTG-------------- ---------------------------AC-CCCTGCCCC-CACCTGCAAGAGAATAA-CC CCC-TTTAACTGTCATTTTCCACTACCTACCTA-AATCCTATAA-----------AACT- GCCCCACCC-C--TATCTCCCTTTGCTGACTCCTTTTTCCGACTCACTCCGCCTGCACCC AGGCG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGACAC-CGTG-----A--C- >LTR7o_chr8_35829022_35829396_EncodeRepressed_SOLO_C_7old___chr8_3582902235829396___1365 TGTCAGGCCTCTGAGTCCAAG--------------------------------------- -----------------------------C-----------------------CTGCACA TATACATCCAGATGGC------------------------------------CTGAGGCA ACT--GAAGAACCACAAAAGAAGTGAAAATGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGACATTCCTTCTCCTGGA------------- -----TCC------------AGAGCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCTGTCCC-TGCCCGCAAGAGAACAA-CT CCC-TTTAACTGAAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACT- GCCCCACCC-C--TAACTCCCTTTGCTGACTCCTTTTTCTGACTCAGCCCGCCTGCACCT AGGTG-------A-TTAAAAAGCTTTATTACTCACACAAAGCCTG--TTT--GGTGGGGT CTTCACACAGATGTGTGTG-----A--C- >LTR7o_chr11_75331868_75332247_h3k27ac_enh_SOLO_NANOG_7old____chr11_7533186875332247____1365 -GTAAGGCTTCTGAGCTCAAG--------------------------------------- -----------------------------C-----------------------CCGCAGG TATACATCCGGATGGC------------------------------------CTGAGGCA ACT--GAAGAACCACAAAAGAAGTGAAAATGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGACATTCCTTCTCCTGGC------------- -----TCC------------GGAGCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTTTG-------------- ---------------------------AC-CCCCGCCCC-TACCCGCAAGAGAACAA-CC CCC-TTTAACTGTAATTTTCCACTACCTACCCA-AATCCTGTAA-----------AACT- GCCCCACCC-C--TATCTCTCTTTGCTGATTCCTTTTTCAGACTCAGTCTACCTGCACCC AGGTG-------A-TTAAAAAGCTTTATTGTTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACAGGGATGTGTGTG-----A--CA >LTR7C_chr12_Sltr_254__chr12_124107089124107505__ TGTCAGGCCTCTGAGCCCAGG--------------------------------------- -----------------------------C-----------------------CTGCACG AATACATCCAGATGGC------------------------------------CTGAGGCA ACT--GAAGAACCACAAAAGAAGTGAAAATGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGACATTCCTTCTCCTGG-------------- ----TATC------------AGAGCCTTCT-CA--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------CAG----CACCTTGTG-------------- ---------------------------AC-CCCCACTCC-TGCAC-CTTGTGAACAA-CC CCC-TTTAACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACT- GCCTCACCC-C--TATCTCCCTTTGCTGACTCCCTTTTCGGACTCAGTCCGCCTGCACCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTA--TTT--GGTGTTCT CTTCACACAGACGGGCATA-----A--C- >LTR7o_chr14_25425572_25430929_2340_1_EncodeRepressed_GRO5of7_GRO6of7_GRO7of7_C_7old___chr14_2543054025430929___1362 TGTCAGGCCTCTGAGTCCAAG--------------------------------------- -----------------------------C-----------------------CTGCACG TGTACATCCAGATGGC------------------------------------CTGAGGCA ACT--GAAGAACCACAAAAGT--TGAAAATGGCC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGACATTCCTTCTCCTGG-------------- ----CTCC------------GGAGCTCCCC-GC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------GAG----CACCGTGTG-------------- ---------------------------AC-CCCCACCCC-TGCCCGAAAGAGAACAA-CC GTC-TTTAACTGTAATTTTCAACTACCTACCTG-AACCTTATAA-----------GACT- GCCCCACCC-C--TATCTCCCTTTGCTGATTCTCTTTTTGGACTCAGTCCACCTGCA-CC AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCATACAGACGCGCGTG-----A--C- >LTR7o_chr19_44591494_44591866_h3k27ac_EncodeRepressed_SOLO_C_7old___chr19_4459149444591866___1363 --TCAGGCCTCTGAGCCCAAG--------------------------------------- -----------------------------C-----------------------CTGCATG TATACATCCAGATGGC------------------------------------CTAAGGCA ACT--GAAGAACCACAAAATAAGTGAAAATGGCC-------------------------- ------------------GGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------ACC--------TT--GTGATATTCCTTCTCCTGG-------------- ----CTCT------------GGAGCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACCCC-TGCCCGCAAGAGAACAA-TC CCC-TTTAACTATAATTTTCCACTATGTACCCA-AATCCTATAA-----------ACAT- GCCCCACCC-C--TATCTCCCTTTACTGACTCCTTTTTTGGATTCAGTCTGCCTGCACCC AGCTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCA CTTCACATGGACGTGCATG-----A--C- >LTR7C_chr1_2ltr_int_fr_54__chr1_226833503226833944_+_ -GTCAGGTCTCTGAGCCCAAG--------------------------------------- -----------------------------CTAAGCCATCATAACCCCTGTGACCTGCACG TATACATCCAGATGGC------------------------------------CTGAAACA ACT--AAAGAACCACAAAAGAAGTG-AAATAGCC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------CCACCATTATGATTTGTTCCTGTCCCACTCTA ACTGATCAATTGACC--------TT--GTGACATTCCTTCTCCTGG---------ACAGT GAGTCTCA------------GGGGCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------AAG----CACCTTGTG-------------- ---------------------------AC-CCCTGCCCC-TGCCTGCAAGAGAAAA--TC CCC-TTTAACTGCAATTTTCCACTACCTACCCA-AATCCTATAA-----------ACCT- GCCCCACCC-C--TATCTCCCTTTGCTGACTCTCTTTTTGGACTCAGCCCACTTGCACCC AAGTG-------A--TAAACAGCCTTGTTGCTCACACAAAGCCTG---TT--GGTGGTCT CTTCACACAGACAAGTGTA-----A--CA >LTR7C_chr19_2ltr_int_fr_572__chr19_2185808421858510_+_ -GTCAGGCCTCTGAGCCCAAG--------------------------------------- ----------------------------------------------------CCTGCACA TATACATCCAGATGGC------------------------------------CTGAGGCA ACT--GAAGAACAATGAAAGAAGTGAAAATGGCC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC AAT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------CCACCATTGTGATTTGTTCCTACCCCACCCTG ACTGATCAATTAACC--------TT--GTGACATTCCTTCTCCTGG---------ACAAT GAGTCTCA------------GAAGCTCCCT-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------GAG----CACCTTGTA-------------- ---------------------------AT-CCCCCCCAC-TGCCTGCAAGAGAAAAA-TT CCC-TTTGACTGTAATTTTCCACTACCTACCCC-AATCCTATAA-----------AACT- GCCCCACCC-C--TATCTCCCTTTGCTGGCTCTGTTTTCAGACTCAGCCCACTTGCACCC AAGTG-------A--TAAACAACCTTGTTCCTCACACAAAGCCTG---TT--GGTGGTCT CTTCACACAGATGTGTGTG-----T--CA >LTR7C_chr1_Sltr_21__chr1_171371956171372388_+_ -GTCAGGCCTCTGAGCCCAAG--------------------------------------- -----------------------------CTAAGCCATCATATCCCCTGTGACCTGCACA TATACATCCAGATGGC------------------------------------CTGAAGCA ACT--GAAGAACCACAAAAGAAGTGAAAATAGTC-------------------------- ------------------ACTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------CCACCATTGTGATTTGCTCCTGCCCCATCCTA ACTGATCAATTGAAC--------TT--GTGACATTCCTTCTCCTGT---------ACAAT GAGTCTCA------------TAATCT---------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------------------G----CACCTCGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCCACAAGAGA-TAA-TC ACC-TTTAACTGTAATTTTCCACTACCTACCCA-AATCCTGTAA-----------AACC- GCCCCACCC-C---ATCTCCCTTTGCTGACTCTCTTTTCAGACTCAGCTCACTTGCACCC AAGTG-------A--TAAACAGCCTTGTTGCTCACACAAAGCCTG---TT--GGTGGTCT CTTCACATGGAGTCGTGTG-----A--CA >LTR7C_chr1_Sltr_fr_101__chr1_7314293773143372__ TGTCAGGCCTCTGAGCCAAAG--------------------------------------- -----------------------------CTAAGCCATCATAACCCTTGTGACCTGCACG TATATATCCAGATGGC------------------------------------CTGGAGCA ACT--GAAGAACCACAAAAGAAATGAAAC-AGCC-------------------------- ------------------AATTTCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC A-T--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------CCACCATCGTGATTTGTTTCTGCCCCACCGTA ACTAATCAATTGACC--------TT--GGGACATT-GCTCCCCTGG---------ACAAT GAGTCTCA------------TGATCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------CTG----CACCTTGTG-------------- ---------------------------AC-CCCCAACCC-CACCTGTAAGAGA-TAA-CC ACC-TTTAACTGTAACTTTCCACTACCTAACCA-AATCCTGTAA-----------AACT- GCCCCATCC-C---ATCACCCTTTGCTGACTCTCTTTTTGGACTCAGCCCACTTGCACCC AAGTG-------A--CAAAGAGCCTTGTTACTCACTGAAAGCCTG---CT--GGTGGTCT CTTCACACAGATGCAT------------- >LTR7C_chr19_Sltr_fr_587__chr19_4245993942460310_+_ -GTCAGGCCTCTGAGCCCAAG--------------------------------------- -----------------------------CTAAGTCATCATATCTCCAGTGATCTGCATG TATACATCCAGCTGGC------------------------------------CCGAAGCA ACT--GAAGAACCACAAAAGTAA--AAAG-AGCC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------GC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------CTACCATTGTGATTTGTTTCTGCCCCACTCTA ACTGATCAATTGACC--------TT--GTGACATTCTTTTTCTTGG---------ACAGT GAGTCTCA------------TGATCTCTCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------GTG----CACTTTGTG-------------- ---------------------------AC-CTCCACCAC-TGCCCACAAGAGA-AAA-CC ACC-TTTAACTGTAATTTTCCACTACCTACCCA-AATCCTGTAA-----------AACT- GTCCC--CC-C---ATCTCCCTTTGCTGACTCTCTTTTCAGACTCAGCCCACTTGCACCC AAGTG------------------------------------------------------- ----------------------------- >LTR7C_chr3_Sltr_930__chr3_55087185509159__ TATCAGACCTCTGAGCCCAAG--------------------------------------- -----------------------------CTAAGCCATCATATCCCCTGTGACCTGCACA TATACATCCAGATGGC------------------------------------CTGAAGCA ACT--GGAGAACCACAAAAGAAGTGAAAATAGCC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------CCACCATTGTGATTTGTTCCTGCCCCACCCTA ACTGATCAATTGACC--------CT--GTGACATTCTTTCTCCTGG---------ACAAT GAGCCTTA------------GAAGCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------GAG----CACCTTGTA-------------- ---------------------------AC-CCCCACCCC-TGCCCACAAGAGAAAAA-CC CCC-TTTGACTGTAATTTTCCACTATCTACCCA-AATCCTATAA-----------AACT- GCCCCACCC-C---ATCTCCCTTTGCTGACTCCTTTCTCGGACTCAGCCCACTTGTACCC AAGTG-------A--TAAACAGCCTTGTTGCTTACACAAAGCCTG---TT--GGTAGTCT TTTCACACAAATGCGTGTG-----A--C- >LTR7C_chr5_Sltr_1100__chr5_111889687111890106__ TGTCGGGTCTCTGAGCCCAAG--------------------------------------- -----------------------------C-----------------------CTGCACA TATACATCCAGATGGC------------------------------------CTGAGGCA ACT--GAAGAACCACAAAAGAAGTGAAAATGGGC-------------------------- ------------------AGTTCCTTCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC CTT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------CCACCATTGTGATTTGTTCCTGTCCCACCCTA ACTGATCAATTGACC--------TT--GTGAAATTCCTTCTCCTGG---------ACAAT GAATATCA------------GAACCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTA-------------- ---------------------------AC-CCCCACCCC-TGCCCGCAAGAGAATAA-CC CCC-TTTAACTGTAATTTTCCACTACCTACCCA-AATCCTATGA-----------AACT- GCCCCACCC-C---ATCTCCCTTTGCTGACTCTCTTTTTGGACTCAGCCCACTTGCACCC AAGTG-------A--TAAACAGCTGTGTTGCTCACACAAAGCCTG---CT--GGTGGTCT CTTCACACGGACGCATGTG-----A--C- >LTR7C_chr12_Sltr_334__chr12_9295704992957473__ TGTCAGGCCTCTGAGCCC------------------------------------------ ----------------------------------CCATCATATCCCCTGTGACCTGCACT TATAAATCCAGATGGC------------------------------------CTGAAGCA ACT--GAAAAACCACAAAATAA-TGAAAATAGCC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------A- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ --------------------------------CATTGTGATTTGTTCCTGCCCCACCCTG ACTGATCAGTTAGCC--------TT--GTGACATTCCTTCTCCTGG---------ACATT AAGTCTCC------------GGAGCTCTCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACCCC-TGCCTGCAAGAGAACAA-CC CCC-TTTAACTGTAATTTTCCACTACCTACCCA-AATCCTATAA-----------AACT- GCCCCACCC-C--TATCTCCCTTTGCTGACTC--TTTTTGGACTCAGCCCACTTGCATCC AAGTG-------A--TAAACAGCCTTGTTGCTCACACAAAGCCTG---TT--AGTGGTCT CTTCACACAGAGGGGCATG-----A--C- >LTR7C_chr5_Sltr_1092__chr5_101156037101156467__ TGTCAGGCCTCTGAGACCAAG--------------------------------------- -----------------------------CTAAGCCATCATATCCCCTGTGACCTGCATG TATAAATCCAGATGGC------------------------------------CTGAAGCA ACT--GAAAAACCACAAAAGAAGTGAAAATAGGC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------CCACCATTGTAGTTTGTTCCTGCTCCACCCTG ACTGATCAATTAACC--------TT--GTGACATTCCTTCTCCTGG---------ACAAT AAGTCTCC------------CGAGCT---------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ---------------------------------------CCCTGTG-------------- ---------------------------AC-CCCCGCCGC-TGCCGGCAAGAGAACCA-CC CCC-TTTAACTGTAATTTTCTACTATCTACCCA-AATCCTATAA-----------AATT- GCCCCACCC-C--TATCTCCCTTTGCTGACTCCTTTCTTGGACTCAGCCCACTTGCACCC AAGTG-------A--TAAACAGCCTTGTTGCTCACGCAAAGCCTG---TT--GGCGGTTT CATCTCACAGACACGCGTG-----A--C- >LTR7C_chr19_Sltr_fr_573__chr19_2186702621867391_+_ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------AAGAACCACAAAAGAAGTGAAAATGTCC-------------------------- ------------------AGTTCCTGCCTTAATTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------CCACCACTGTGATTTGTTCCTGCCCCACTCTG ACTGATCAATTAACC--------TT--GTGACCTTCCTTCTCCTGG---------ACAAT GAGTCTCA------------GAAGCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------AAG----CACCTTGTA-------------- ---------------------------AC-CCCCGCCCC-TGCCCACAAGAGAAAAA-CC CCC-TTTGACTGTAGTTTTCCACTACCTACCCA-AATTCTATAA-----------AACT- GCCCCACCC-C--TATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACTTGCACCC AAGTG-------A--TAAAAAGCCTTGTTGCTCACACAAAGTCTG---TT--GGTGGTGT CTTGACATGGACGCACATG-----A--CA >LTR7C_chr5_Sltr_1157__chr5_4360716443607606_+_ -GTCAGGACTCTGAGCCCAAG--------------------------------------- -----------------------------CTAAGCCATCATAACCCCTGTGATCTGCACG TATACATCCAGATGGC------------------------------------CTGAAGCA ACT--GAAGAACCACAAAAGAAGTGAAAATGGCC-------------------------- ------------------AGTTCCTGCCTTAACTGAT----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------CCACCATTGTGATTTGTTTGTGCCCAACCCTA ACTGATCAATTGACC--------TT--GTGACATTCCTTCTCCTGG---------ACAAT GAGTCTCA------------GGAGCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------AC-CCCCACCAC-TGTCTGCAAGAGAA-AA-CC TCC-CTTAACTGTAATTTTCCACCACCTACCCA-AATCCTATAA-----------AACT- GCCCCACCC-C--TATCTGTCTTTGCTGACTCTCTTTTCGGACTCAGCCCACTTGCACCC AAGTG-------A-ATAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGTGCATA-----A--CA >LTR7C_chr1_2ltr_int_fr_2__chr1_104380123104380544_+_ -GTCAGGCCTCTGAGCCCAAG--------------------------------------- ----------------------------------------------------CCTGCAAG TATACTTCCAGATGGC------------------------------------CTGAGGCA ACC--AAA-AACTACAAAGGAAGTG-AAACAGTC-------------------------- ------------------AGCTCCTGTCTTAACTGATTGACCACCCTTAG---------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ -------------------------------CCATTATGATTTGTTCCTGCCCTGCCCCA ACTGAT----CCACC--------TC--GTGACATTC-TTCTTCTGA---------ACAAT GAGACTTA------------TGATCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------ATG----CACCTTGTG-------------- ---------------------------AC-CCCCTCCTC-TGCTGACAATAG-ATAA-CC ACC-TTTAACTGTAACTTTCTACTGT----CCC-AGTCTTATAA-----------AGCT- ACCCCACCC-C--TACCTCCCTTGGCTGACTCTCTTTTCGGACTCAGCCCACTTGCCCCC AAGTG-------A-ATAAACAGCCTTGTTGCTCACACAAAGCCTG--T-T--GGTGGTCT CTTTACACGGATGTGCTTG-----A--CA >LTR7C_chr4_Sltr_1012__chr4_156021421156021848_+_ -GTCAGGCCTCTGAGCTTAAG--------------------------------------- ----------------------------------------------------CCTGCACA TATACATCCAGATGGC------------------------------------CTGAGGCA ACC--GAA-AACTACAAAGGAAGTG-AAACAGCC-------------------------- ------------------AGCTCCTGTCCTAACTGATTGACCAACCTTAC---------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ -------------------------------CCACTGTGATGTGTTCCCGCCCTGCCCCA ACTGATAGATCAACC--------TC--GTGACATTC-TTCTTCTGG---------ACAAT GAGTCTTA------------GGATCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------ATG----CACCTTGTG-------------- ---------------------------AC-CCCCTCCTC-TGCTGACAATAG-ATAA-CC ACC-TTTAACTGTAACTTTCCACTGCTTACTCC-AGTCCTATAG-----------AACT- GCCTCACCC-C---ATCTCCTTTGGCTGACTCTCTTTTCGGACTCAGCCCATTTGCACTC AAGTG-------A-ATAATCAGTCTTGTTGTTCACACAAAGCCTG--T-C--GGTGGTCT CTTCACACAGATGCACTTG-----A--CA >LTR7C_chr2_2ltr_int_fr_740__chr2_4137783341378263_+_ -GTCAGGCCTCTGAGCCCAAG--------------------------------------- ----------------------------------------------------CCTGCACA TATACATCCAGATGGC------------------------------------CAGAGGCA ACC--GAA-AACTACAAAAGAAGTA-AAACAGCC-------------------------- ------------------AGCTCCTGTCTTAAATGATTGACCAACCTTAC---------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ -------------------------------CCATTATGACTTGTTCCTGCCCTGCCCCA ACTGATTGATCGACC--------TC--GTGACATTC-TTCTTCTGG---------ACAAT GAGTCTTA------------TGATCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------ATG----CACCTTGTG-------------- ---------------------------AC-CTCCTCTTC-TGCTGACAATAG-ATAA-CC ACC-TTTCACTGTAACTTTCCACTGCTTACCCC-AGTCCTGTAA-----------AACT- GCCCCACCC-C--TATCTCCCTTTGCTGACTCTCTTTTCAGACTAAGCCCACTTTTACCC AAGTG-------A-ATAAACAGCCTTGCTGCTCACACAAAGTCTA--T-T--GGTGGTCT CTTCACATGGACACGCTTG-----A--CA >LTR7C_chrX_2ltr_int_fr_1569__chrX_7563728275637730__ TGTCAGGCTTCTGAGCCGAAG--------------------------------------- ----------------------------------------------------CCTGCACA TATATGTCCAGATGGC------------------------------------CAGAGGCA ACC--CAA-AACTACAGAAGAAGTA-AAACAGCC-------------------------- ------------------AGCTCTTGTCTTAACTGATTGACCAACCTTAC---------- ---A-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ -------------------------------CCATTATGACTTGTTCCTGCCCTGCCCCA ACTGATTGATCAACC--------TC--GTGACATTC-TTCTTCTGG---------GCAAT GAGTCTTA------------TGATCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------ATG----CACCTTGTG-------------- ---------------------------AC-TCCCTCCTC-TGCTGAC------------- ----------TGTAACTTTCCACTGCTTACCCC-AGTCCTATAA-----------AACT- GCCCCACCC-C--TATCTCCCTTTGCTGACTCCTTTTTCGGACTCAGCCCACCTGCATCC AGGTG-------A-ATAAACAGCTTTATTGCTCACAGAAAGCCTG--T-T--GGTGGTCT CTTCACACGGACGCATATG-----A--C- >LTR7C_chr17_Sltr_528__chr17_8234637382346833__ TGTCAGGCCTCTGAGCCGAAG--------------------------------------- ----------------------------------------------------CCTGCACA TGTATGTCCAGATGGC------------------------------------CAGAGGCA ACC--CAA-ATCTACAAAAGAA-TG-AAACAGCC-------------------------- ------------------AGCTCCTGTCTTAACTGATTGACCAACCTTAC---------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ -------------------------------CCATGATGACCTGTTCCTGCCCTGTCCCA CCTGATCGATCGACC--------TC--GTGACATTC-TTCTTCCGG---------ACAAT GAGTCTTA------------TGATCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------ATG----TACCTTGTG-------------- ---------------------------AC-CCCCTCCTC-TGCTGACAATAG-GTAA-CC ACC-TTTCACTGTAACTTTCCACTGTTTACCCC-AGTCCTATAA-----------AACG- GCCCCACCC-C--TACCTCTCTTTGCTGACTC--TTTTCGGACTCAGCCCACTTGCACCC AAGTG-------A--TAAACAGCCTTGTTGCTCACACAAAGCCTG--T-T--GGTG-TCT CTTCACATGGACGCACGTG-----A--C- >LTR7C_chr5_Sltr_1155__chr5_4332082343321290__ TGTCAGGTCTCTGAGCCGAAG--------------------------------------- ----------------------------------------------------CCTGCACA TATACGTCCAGGTGGC------------------------------------CAGAGGCA ACC--CAA-AACTACAGAAGAAGTG-AAACAGCC-------------------------- ------------------AGCTCCTGTCTTAACTGATTGACCAACCTTAC---------- ---A-------------------------------------------------------- ----------------------------------------------------------AT ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ -------------------------------CCATTATGACTTGTTCCTGCCCTGCCCCA ACAGATCAATCAATC--------TC--GTGACATTC-TTCTTCGGG---------ACAAT GAGTCTTA------------TGATCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------ATG----CACCTTGTG-------------- ---------------------------AC-CCCCTCTTC-TGCTGACAATAG-ATAA-CC ACC-TTTAACTGTAACTTTCCACTGTTTAACCC-AGTCCTATAA-----------AACT- GCCCCATGC-C--TATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACTTGCCCCC AAGTG-------A-CAAGACAGCCTTGTTGCTCACACAAAGCCTG--T-T--GGTGGTCT CTTCACACGGACGCACTTG-----A--C- >LTR7C_chr7_Sltr_1299__chr7_118580727118581193__ TGTCAGGCCTCTTAGCTGAAG--------------------------------------- ----------------------------------------------------CCTGAACA TATACGACCAGATGGC------------------------------------CAGAGGCA ACC--TAA-AACTACAAAAGAAGTG-AAGCAGCC-------------------------- ------------------AGCTCCTGTCTTAACTGATTGACCAACCTTAC---------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ -------------------------------CCATTATGACTGGTTCCTGTCCTGCCCCA ACTGATAGATCGACC--------TT--CTGACATTC-TTCTTCTGA---------ACAAT GAGTCTTA------------TGATCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------ATG----CACCTTGTG-------------- ---------------------------AC-CCCCTCCTC-TGCTAACCACAG-ATAA-CC ACC-TTTAACTGTAACTTTCCACTGCTTCCCCC-AGTCCTATAA-----------AACT- CCCCCACCC-C--TATCTCCCTTTGCTGACTCTCTTTTCAGACTCAGCCCACTTGCACCC AAGTG-------A-ATTAACAGCCTTGTTGCTCACACAAAGCCTG--T-T--GGTGGTCT CTTCA-ACGGATGCGCTTG-----A--C- >LTR7C_chr22_Sltr_818__chr22_3913037839130739_+_ -GTCTGGCCTCTGAGCTGCAG--------------------------------------- ----------------------------------------------------CCTGCACA TATACATCCAGATGGC------------------------------------C------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ --T--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ -------------------------------CCATTATGGCTTGTTCCTGCCCTGCCCCA ACTGATCGA----CC--------TG--GTGAC---C-TTCTTCCGG---------ACAAT GAGTATTA------------TGATCTCCCC-AA--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------AGG----CACCTTGTG-------------- ---------------------------AC-CCCCTCCCC-TGCTGACAATAG-CTAA-CC ACC-TTTCACTGTAACTTTCCACTGCTTACCCC-AGTCCTATAA-----------AACT- GCCCCACCC-C--TATCTCCCTTGGCTGACTCTTTTT--GGACTCAGCCCACTTGCACCC AAGTG-------A-ATAAACAGCCTTGTTGCTCGCACAAAGTCTG--T-T--GGTGG--- --------GGATGCACTTG-----A--CA >LTR7C_chr5_Sltr_1150__chr5_2111793421118360__ TATCAGGCCTCTTAGCCCAAG--------------------------------------- ----------------------------------------------------CCTGCACA TATACATCCTGATGGC------------------------------------CTGAGGCA ACC--GAA-AAGTATAAAAGAAGTG-GAAGTGCC-------------------------- ------------------AGCTCCTGTCTCAACTGATTGACCAACCTTAA---------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ -------------------------------CCATTATGACTTGTTCCTGCCCTGCCCCA ACTGATCGATTGACC--------TC--GTGACATTC-CTCTTTTGG---------ACAAT GAGTCTTA------------TGATCTCCTC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------ATT----CACCTTGTG-------------- ---------------------------AT-C-CCTCCTC-AGCTGACAATAG-ATAA-CC ACC-TTTAACTGTAACTTTCCACTGCCTGCCCC-AGTCCTATAA-----------AACT- GCCCCATCC-C--TATCTCCCTTTGCTGACTCCTGTCTCAGACTCAGCCCATTTGCACCC AAGTG-------A--TAAACAGTCTTGTTGTTCACACAAAGCCTG--T-T--GGTGGTCT CTTCACACGGACGCGCATG-----A--C- >LTR7C_chr4_Sltr_969__chr4_109810942109811372__ TGTCAGGCCTCTGAGCCCAAG--------------------------------------- ----------------------------------------------------CCTGCGTG TATACATCCAGATGGC------------------------------------CTGAGTCA ACT--GAA-AACTACAAAGGAAGAG-AAACAGCC-------------------------- ------------------TGCTCCTGTCTTAACTGATTGACCAACCTTAA---------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ -------------------------------CCATTATGACCTGTTCCTTCCCTG-CCCA ACTGATTGATCGACC--------TC--GTGACATTC-TTCTTCTGG---------ACCAT GGGTCTTA------------TGATCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------ATG----CACCTTGTG-------------- ---------------------------AC-CCCCTCCTC-TGCTGACAATAG-ATAG-CC ACC-TTTAACTGTAACTTTCCACTGCTTATCCC-AGTCCTATAA-----------AACT- GCCCCACCC-C---ACCTCCCTTTGCCGACTC--TTTTCAGACTCAGCCCACTTGCTCCC ACATG-------A-ATAAACAGCCTTGTTGCTCACACAAAGCCTG--T-T--GGTGGACT CTTCACACGGACGAGCGTG-----A--C- >LTR7C_chr19_2ltr_int_fr_596__chr19_5262068452621112_+_ --TCAGGCCTCTGAGCCCAAG--------------------------------------- ----------------------------------------------------TCTGCACG TATACATCCAGATGGT------------------------------------CTGAGGCA AGC--GAA-AAGCACAAAAGAAGTG-AAACAGCC-------------------------- ------------------AGCTTCTGTCTTAACTGATTGACCAACCTTAT---------- ---G-------------------------------------------------------- ----------------------------------------------------------AC TTT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ -------------------------------CCATTATGACTTGTTTCTGCCCTGCCCCA ACTGATGGATCAACC--------TC--ATGACATTC-TTCTTCTGG---------ACAAT GAGTCCTA------------TGACCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------ATG----CACTTTGTG-------------- ---------------------------AC-CCCCTCCTC-TGCTGACAATAG-ATAA-CC ACC-TTTAATTGTAACTTTCCACTGCTTATCCC-AGTCCTATAA-----------AACT- GCCACTCCC-C--TATCTCCCTTTGCTGACTC-CTTTTTGGACTCAGCCTGCCTGCACCC AGGTA-------A-ATAAACAGCCTTGTTGCTCACACAAAACCTG--TTT--GGTGGTCT CTTCACAGGGACATACGTG-----A--CA >LTR7C_chr7_2ltr_int_fr_1361__chr7_9972315199723575_+_ ---CAGGCCTCTTAGCCCAAG--------------------------------------- ----------------------------------------------------CCTGCATG GGTACATCCAGATGGC------------------------------------CTGAGGCA ACC--AAA-AACTACAAAT-AGGTG-AAACAGCC-------------------------- ------------------AGCTCCTGTCTTAACTGATTGACCAACCTTAC---------- ---A-------------------------------------------------------- ----------------------------------------------------------AC GTT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ -------------------------------CCATTATGACTTGTTACTGCCCTGCCCCA ACTGATTGATCGACC--------TC--GTGACATTC-TTCTTCTGG---------ACAAT GAGTCTTA------------TGATCTCCCT-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------ATG----CACCTTGTG-------------- ---------------------------AC-CCCCTCCTC-TGCTGACAATAG-ATAA-CT TCC-TTTAACTGCAACTTTCCACTGCTTACCCC-AGTCCTATAA-----------AACT- GACCCACCC-C--TATCTCCCTTTGCAGACTC-CTTTTCGGACTCAGTCAGCCTGCACCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGACTG--TTT--GGTGGTCT CTTCACATGGACGCAAATG-----A--CA >LTR7C_chr15_Sltr_fr_435__chr15_2793346427933851__ ------------------------------------------------------------ ------------------------------------------------------------ -------------AGC------------------------------------CTGAGGCA ACT--GAA-AAGTACAAAAGAAGTG-AAACAGCC-------------------------- ------------------AGCTCTTGTCTTAATTGATTGACCAACCTTAC---------- ---A-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ -------------------------------CCGCTATGACTTGTTCCTGCGCTGTCCCA ACTGATCCATCGACC--------TC--ATGACATTC-TTCTTCTGG---------ACAAT GAGTCTTA------------TGTTCTCTCC-AG--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------ATG----CACGTTGTG-------------- ---------------------------AC-TCCCGCCCT-GGCCTGCAAGAG-AAAA-CC CCC-TTTAACTGTAACTTTCCACTGCTTACCCC-AGTCCTATAA-----------AACT- GCCCCATCC-C--TAACTCCCTTCGCTGACTCTCTTTTCGAACTCAGCTCGCCTGCACCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCATACGGACACGCGTG-----A--C- >LTR7C_chr8_Sltr_1377__chr8_124897369124897795__ TGTCAGGCCTCTGAGCCCAAG--------------------------------------- ----------------------------------------------------CCTGCACA TATACATCCAGATGGC------------------------------------CTGAGGCA A-T--CAG-AAGTGCAAAAGAAGTG-AAACAGCC-------------------------- ------------------AGCTCTTGTCTTAACAGATTGAACAACCTTAT---------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ -------------------------------CCATTATGACTTGTTCCTTCCCTGCCCCA ACTGATCGATCGACC--------TT--GTGACATTC-TTCTTCTGG---------ACAAT GAGTCTTA------------TGATCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------ATG----CACCTTGTG-------------- ---------------------------AC-CCCCTCATA-GGCTGACAATAG-ATAA-CC ACC-TTTAACTGTAACTTTCCACTGCTTACCCC-AGTCCTATAA-----------AACT- GCCCCATCC-C--TATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACCTGCACCC AGGTG-------A-TTAAAAAGCTTTATTGCTCACACAAAGCCTG---TT--GGTGGTCT CTTCACACGGATGTGCATG-----A--C- >LTR7C_chrX_2ltr_int_1540__chrX_2729455027294978__ TGTCAGGCCTCTGAGCCCAAG--------------------------------------- ----------------------------------------------------CCTGCATG TATACATCCAGATGGC------------------------------------CTGAGGCA ACC--GAA-AAGTACAAAAGAAGGG-AAACAGCT-------------------------- ------------------AGCTCCTGTCTTAACTGATTGACCAACCTTAC---------- ---A-------------------------------------------------------- ----------------------------------------------------------AC TTT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ -------------------------------CCATTATGATTTGTTCCTGCTGTGTCCCA GCTGATCGATCGAGC--------TT--GTGACATTC-TTCTTCTGG---------ACAAT GAGACTTA------------TGATCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------ATG----TACCTTGTG-------------- ---------------------------AC-CCCCGCCCC-TGCCCACAAGAG-AAAA-CC TAC-TTTAACTATAACTTTCCACTGCTTATCCC-AGTCCTATAA-----------AACT- GCCCCATCC-C--TAACTCCCTTCGCTGACTGCTTTCTTGGACTCAGCCCACTTGCACCC AGGTG-------A-ATAAACAGCCTTGTTGCTCACCCAAAGTCTG---TT--GGTGGTCT CTTCACACAGACGCTCATG-----A--C- >LTR7C_chr4_Sltr_fr_975__chr4_117914207117914631_+_ --TCAGGCTTCTGAGCCCAAG--------------------------------------- ----------------------------------------------------CCTGCATG TATACATCCAGATGGC------------------------------------CTGAGACA ACT--GAA-AAGTACAAAAGAAGTG-AAAGAGCC-------------------------- ------------------AGCTCCTTTCTTAACTGATGGACAAACCTTAC---------- ---A-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ -------------------------------CCATTATGATTTGCTCCTGCCCTGTCCCA AATGATCGATGGACC--------TC--GTGACATTC-TTCTTCTGG---------AAAAT GAGTCTTA------------TGATCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------AAG----AACCTTGCG-------------- ---------------------------AC-GCCAACCCC-TGCCCGCAAGAG-AAAA-CC CCC-TTTAACTGTAACTTTCCACTGCTTATCCC-AGTCCCATAA-----------AAGT- GCCGCATCT-C--TAACTCCCTTCACTGACTCCTTTCTCAGACTCAGCCCACTTGCACCC AAATG-------A-ATAAACAGCTTTGTTGCTCACACAAAGCCTG---TT--GGTAGTCT CTTCACACGGACGC--ATG-----T--G- >LTR7C_chr16_2ltr_int_fr_474__chr16_3574530135745766__ TGTCAGGTCTCTGAGCCAAAG--------------------------------------- -----------------------------CTCAGCCATTGTAACCCCTGTGACCTACACA TAAATGTCCAGATGGCCTGCAAGAGCCAAGAAGT------------------CTGGGTCA ACCA-AAA-AAACACAAAAGAAGTA-AAATAACC-------------------------- ------------------AGTTCCTGCCTTAACTGATTAACCAACATTAC---------- ---A-------------------------------------------------------- ----------------------------------------------------------CC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------ACACCATTGTGACTTGTCCCTGCCCTACCTTA ACTGATCAATCAACC--------TT--GTAACATTC-TTATTCTGG---------ACAAT AAGTCTTA------------TGATCTCCCC-AT--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------ATG----TACCTTGTG-------------- ---------------------------AC-CCTGTCCTC-TGCTAACAATAG-ATGA-CC ACC-TTTTACTGTAAATTTCCATTACTTACCCA-ACTCCTGTAA-----------AGCA- -CCCCTTCC-T--TATCTCCCTTTGCTGACTCTCTTTTTGGACTCAGTCCACTTGCCCCC AAGTG-------A-ATAAACAGCCTTGTTGCTCA-ACAAAGCCTG--TT---GGTGGTCT CTTCACATGGATGGGCTTG-----A---- >LTR7C_chr11_Sltr_fr_192__chr11_2603013026030550_+_ -GTCAGGCCTCTGAGCCGAAG--------------------------------------- -----------------------------CTCAGCCATTGTAACCCCTGTGACCTGCACA TATATGTCCAGATGGCCTGCAGGAGCCAAGAAGT------------------CTGGGGCA GCCG-AAA-AACCACAAAGGAAATA-AAACAGCC-------------------------- ------------------ACTTCCTGCCTTAATTGATTAACCAACATTAC---------- ---A-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------CCTCCATTGTGACTTGTCCCTGCCCTACCTTA ACTGATCAATCGACC--------TT--GTGACATTC-TTCTTCTGG---------ACAAT AAGTCTTA------------TGGTCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------ATG----TACCTTGTG-------------- ---------------------------AC-CCCCTCCTC-TGCT---AATAG-ATAA-CC ACC-TTTTACTGTAATTTTCCATTACCTACCCA-ACTCCTATAA-----------AGCA- ACCCCTTCC-C--CATCACCATTCGCTGACTCTCTTTTCGGACTCAGCCCACTTGCACC- AAGTT-------A-ATAAACAGCCTTGTTGCTC--------------------------- ----------------------------- >LTR7C_chr2_Sltr_760__chr2_7113150271131972__ TGTCAGGCCTCTGAGCTGAAG--------------------------------------- -----------------------------CTCAGCCATTGTAACCCCTGTGACCTGCACA TATATGTCCAGATGGCCTGCAGGAGCCAAGAAGT------------------CTGGGGCA GCCG-AAA-AACCACAAAAGAAATA-AAACAGCC-------------------------- ------------------AGTTCCTGCCTTAATTGATTAATCAACATTAC---------- ---A-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------CCTCCATTGTGACTTGTCCCTGCCCTACCTTA ACTGATCAATCGACC--------TT--GTGACATTC-TTCTTCTGG---------ACAAT AAGTCTTA------------TGATCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------ATG----TACCTTGTG-------------- ---------------------------AC-CCCCTCCTC-TGCT---AATAG-ATAA-CC ACC-TTTTACTGTAATTTTCCATTACCTACCCA-ACTCCTATAA-----------AGCA- ACCCCTTCC-C--CATCACCATTAGTTGACTCTCTTTTCGGACTCAGCCCACTTGCACCC AAGTG-------A-ATAAACAGCCTTGTGGCTCACACAAAGCCTG--TT---AGTGGTCT CTTCACACAGACGCGCTTG-----A--C- >LTR7C_chr14_Sltr_388__chr14_2393957623940044__ TGTCAGGCCTCTGAGCCGAAG--------------------------------------- -----------------------------CTCAGCCATTGTAACCCCTGTGACCTGCACA TATATGTCCAGATGGCCTGCAGGAGCCAAGAAGT------------------CTGGGGCA GCTG-AAA-AACCACACAAGAAGTA-AAACAGCC-------------------------- ------------------AGTTCCTGCCTTAACTGATTAACCAACATTAC---------- ---A-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------CCACCATTGTGACCTGTCCCTGTCCTACCTTA ACTGATCAATCGACC--------TT--GTGACAGTC-TTCTTCTGG---------ACAAT GGGTCTTA------------TCATCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------ATG----TACCTTGTG-------------- ---------------------------AC-CCCCTCCTC-TGCTAACAATAG-ATAA-CC ACT-TTTTACTGTAATTTTCCATTACCTACCCA-ACTCCTATAA-----------AGCA- ACCCCTTCC-C--CATCTCCCTTCACTGACTCTGTTTTCAGACTCAGCCCACTTGCACTC AAGTG-------A-ATAAACAGCCTTGTTGCTCACACAAAGCCTG--TT---GGTGGTCT CTTCACACAGATGTGCTTG-----A--C- >LTR7C_chr11_Sltr_223__chr11_7808656378087032_+_ -GTCAGGCCTCTGCGCCGAAG--------------------------------------- -----------------------------CTCAGCCATTGTAACCCCTGTGACTTGCACA TATGTGTCCAGATGGCCTGCAGGAGCCAAGAAGT------------------CTGGGGCA GCTG-AAA-AACCACAAAAGAAGTA-AAACAGCC-------------------------- ------------------AGTTCCTGCCTTAACAGATTAACCAACATTCC---------- ---A-------------------------------------------------------- ----------------------------------------------------------CC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------CCACCATTGTGACTGGTCCCTGCCCTACCTTA ATGGATCGATTGACC--------TT--GTGACATTC-TTCTTCTGG---------ACAAT GAGTCTTA------------TGATCTCCCT-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------ATG----TACCTTGTG-------------- ---------------------------AC-CCCCTCCTC-TGCTAACAATAG-ATAA-CC ACC-TTTTAGTGTAATTTTCCATTACCTACCCA-ACTCCTATAG-----------GGCA- ACCCCTTCC-C--CATCTCCCTTCGCTGACTCTCTTTTCAGACTCAGCCCACTTGCACCC AAGTG-------A-ATAAACAGCCTTGTTGCTCACACAAAGCCTG--TT---GGTGGCGT CTTCACACAGACATGCGTG-----A--CA >LTR7C_chr17_Sltr_502__chr17_4037244740372915__ TGTCAGGCCTCTGAGCCGAAG--------------------------------------- -----------------------------CTCAGCCATTATAACCCCTGTGACCTGCACA TACACGTCCAGATGGCCTGCAGGAGCCAAGAAGT------------------CTGGGGCA GCTG-AAA-AACCACAAAAGAAGTG-AAACAGCC-------------------------- ------------------AGTTCCTGCCTTAACTGATTAACCAACATTAC---------- ---A-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------CCACCATTGTGACTTGTCCCTGCCCTACCTTA ACTGATCAATCGGCC--------TT--GTGACATTC-TTCTTCTGG---------ACAAT GAGTCTTA------------TAATCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------ATG----TACCTTGTG-------------- ---------------------------AC-CCCCTCCTC-TGCTAACAATAG-ATAA-CC ACC-TTTTACTGTAATTTTCCATTACCTACCCA-ACTCCTATAA-----------AGCA- ACCCCTTCC-C--CATCTCTCTTCATTGACTCTCTTTTCGGACTCAGCCCACTTGCACCC AAGTG-------A-ATAAACAGCCTTGTTGCTCACACAAACCCTG--TT---GGTGGTCT CTTCACATGGATGCGCTTG-----A--C- >LTR7C_chr10_Sltr_129__chr10_130487053130487525_+_ -GTCAGGCCTCTGAGCCGAAG--------------------------------------- -----------------------------CTCAGCCATTATAACCTCTGTCACCTGCGCA TACACATCCAGGTGGCTTGCAGGAGCCAGGAAGC------------------CTGGAGCA GCCA-AAA-AACTAC-AAAGAAGTA-AAACAGCC-------------------------- ------------------AGTTCCTGCCTTAACTGATTAACTAAAATTAC---------- ---A-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------TTACTATTGTGACTTGTCCCTGCCCTACCTTA GCTGATCAATCGACT--------TT--GTGACATTC-TTCTTCTGG---------ACAAT GAGTCTTA------------CGATCTCTCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------ATG----CACCCTGCA-------------- ---------------------------AC-CCCCTCCTT-TGCTAACAATAG-ATAA-CC CCC-TTGTACTGTACTTTGCCATTAC-TACCCA-ACTCCTGTAA-----------AGCA- ACCCCCTCC-C--CATCTCCCTTCGCTGACTCTCTTTTTGGACTCAGCCCATTTGCACCC AAGCG-------A-ATCAACAGCTTTATTGCTCACACAAAGCCTG-TTT---GGTGGTCT CTTCACACAGACGCACTTG-----A--CA >LTR7C_chr20_Sltr_788__chr20_3699029836990771_+_ -GTCAGGCCTCTGAGCTGAAG--------------------------------------- -----------------------------CTCAGCCATTATAACCCCTGTGACCTGCACA TACACATCTAGGTGGCCTGCAGGAGCCAAGAAGT------------------CTGGAGCA GCAA-AAA-AACTAC-AAAGAAGTA-AAACAGCG-------------------------- ------------------AGTTCCTGCCTTAACTGATTAACTAACATTAC---------- ---A-------------------------------------------------------- ----------------------------------------------------------AT ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------TTATTATTGTGACTTGTCCCTGCCCTACCTTA GCTGATCAATCAACT--------TT--GTGACATTC-TTCTTCTGG---------ACAAT GAGTCTTA------------TGATCTCTCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------ATG----CACCTTGTA-------------- ---------------------------AA-CCCCTCCTC-TGCTAACAATAG-ATAA-CC ACC-TTTTGCTATAATTTTCCATTACCTACCCA-ACTCCTATAA-----------AGCA- ACCCATTCC-C--TATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACTTGCACCC AAGTG-------A-ATAAACAGCTTTATTGCTCACACAAAGCCTG-TTT---GGTCGTCT CTTCACACGGACTCACTTG-----A--CA >LTR7C_chrX_Sltr_1538__chrX_21875762188047_+_ -GTCAGGCCTCTGAGCTGAAG--------------------------------------- -----------------------------CTCAGCCATTATCACTCCTGTGACCTGCACA TATACATCCAGGTGGCCTGCAGGAGCCAAGAATT------------------CTGGAGCA GCCA-AAA-AACTAC-AAAGAAGTT-AAACAGCC-------------------------- ------------------AGTTCCTGCCTTAACTGATTAACTAAAATTAC---------- ---A-------------------------------------------------------- ----------------------------------------------------------AT ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------TTACTATTGTGACTTGTCCCTGCCCCAGTTTA GCTGATCAATCAACT--------CT--GTGACATTC-TTCTTCTGG---------ACAAT CAGTCTTA------------TGATCTCTCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------ATG----CACCTTGTA-------------- ---------------------------AC-CCCCTCTTC-TGCTGACGATAG-ATAA-CC ACC-TTTTGCTGTAATTTTCCATTACCTACCCA-GCTCCTGTAA-----------AGCC- ACACCTTCC-C--CATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACTTGCACCC AAGTG-------A-ATACACAGCTTTATTGCTCACACAAAGCCTG-TTT---GGTGGTCC CTTCA--CGGACGCGCGTG-----A--CA >LTR7C_chrY_Sltr_1607__chrY_21875762188047_+_ -GTCAGGCCTCTGAGCTGAAG--------------------------------------- -----------------------------CTCAGCCATTATCACTCCTGTGACCTGCACA TATACATCCAGGTGGCCTGCAGGAGCCAAGAATT------------------CTGGAGCA GCCA-AAA-AACTAC-AAAGAAGTT-AAACAGCC-------------------------- ------------------AGTTCCTGCCTTAACTGATTAACTAAAATTAC---------- ---A-------------------------------------------------------- ----------------------------------------------------------AT ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------TTACTATTGTGACTTGTCCCTGCCCCAGTTTA GCTGATCAATCAACT--------CT--GTGACATTC-TTCTTCTGG---------ACAAT CAGTCTTA------------TGATCTCTCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------ATG----CACCTTGTA-------------- ---------------------------AC-CCCCTCTTC-TGCTGACGATAG-ATAA-CC ACC-TTTTGCTGTAATTTTCCATTACCTACCCA-GCTCCTGTAA-----------AGCC- ACACCTTCC-C--CATCTCCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACTTGCACCC AAGTG-------A-ATACACAGCTTTATTGCTCACACAAAGCCTG-TTT---GGTGGTCC CTTCA--CGGACGCGCGTG-----A--CA >LTR7C_chr7_Sltr_1339__chr7_3665979436660261_+_ -GTCAGGCCTCTGAGCCGAAG--------------------------------------- -----------------------------CTCGGCCATTATAACCCCTGTGACCTGCACA TATCCGTCTAGATGGCCTGCAGGAGCCAAGAAGT------------------CTGGAGCA GCCA-AAA-AACTAC-AAAGAAGTA-AAACAGCC-------------------------- ------------------AGTCCCTGCCTTAACTGA----GTAAAATTAC---------- ---A-------------------------------------------------------- ----------------------------------------------------------AT ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------TTACTATCGTGACTTGTCCCTGCCCTATCTTA GTTGATCATTTGACT--------TT--GTGACATTC-TTCTTCTGG---------ACAAT AAGTCTTA------------TGATCTCTCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------ATG----TACCTTGCA-------------- ---------------------------AC-CCTCTCCTC-TGCTAACAGTAA-ATAA-CT ACC-TTTTATTGTAATTTTCCATTACCTACCCA-ACTCCTATAA-----------AGCA- ACCGCTTCC-C--CATCTCCCTTCGCTGACTGTCTTTTCGGACTCAGCCCACTTGCACCC AAGTG-------A-ATAAACAGCTTTATTGCTCACGCAAAGCCTG-TTT---GGTGGTCT CTTCACACGGACGTGCTTG-----A--CA >LTR7C_chrX_Sltr_1541__chrX_278908279378__ TGTCAGGCCTCTGAGCCGAAG--------------------------------------- -----------------------------CTCAGCCATTATCACCCCTGTGACTTGCACA TATACGTCCAGGTGGCCTGCAGGAGCCAAGAAGT------------------CTGGAGCA GCCA-AAA-AACCAC-AGAGAAGTA-AAACAGCC-------------------------- ------------------AGTTCCTGCCTTAACTGGTTAACTAAAATTAC---------- ---A-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------TTACTATCGTGAGTTCTCCCTGCCCTACCTTA GCCGATCAATCGACT--------TT--GTGCCGTTC-GTCCTCTGG---------ACAAT GAGTCTTA------------TGATCTGTGC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------ACG----CACCTTGCA-------------- ---------------------------AT-CC-CTCCTC-TGCTGACAATAG-ATAA-CC ACC-TTTTGCTGTAATTTTCCATTACCTACCCA-ACTCCTATTG-----------AGCC- ACCCCTCCC-C--CATCTCCCTTCGCTGACTCTCTCTTCGGACTCAGCCCACTTGCACCC AAGTG-------A-ATGAACCGCTTTATCGCTCACACAAAGCCTG-TTC---GGGGGTCT CTTCGCACCGACGCGCTTG-----A--C- >LTR7C_chrY_Sltr_1608__chrY_278908279378__ TGTCAGGCCTCTGAGCCGAAG--------------------------------------- -----------------------------CTCAGCCATTATCACCCCTGTGACTTGCACA TATACGTCCAGGTGGCCTGCAGGAGCCAAGAAGT------------------CTGGAGCA GCCA-AAA-AACCAC-AGAGAAGTA-AAACAGCC-------------------------- ------------------AGTTCCTGCCTTAACTGGTTAACTAAAATTAC---------- ---A-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------TTACTATCGTGAGTTCTCCCTGCCCTACCTTA GCCGATCAATCGACT--------TT--GTGCCGTTC-GTCCTCTGG---------ACAAT GAGTCTTA------------TGATCTGTGC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------ACG----CACCTTGCA-------------- ---------------------------AT-CC-CTCCTC-TGCTGACAATAG-ATAA-CC ACC-TTTTGCTGTAATTTTCCATTACCTACCCA-ACTCCTATTG-----------AGCC- ACCCCTCCC-C--CATCTCCCTTCGCTGACTCTCTCTTCGGACTCAGCCCACTTGCACCC AAGTG-------A-ATGAACCGCTTTATCGCTCACACAAAGCCTG-TTC---GGGGGTCT CTTCGCACCGACGCGCTTG-----A--C- >LTR7C_chr2_Sltr_657__chr2_128489985128490438_+_ -GTCAGG-CTCTGAGCCAAAG--------------------------------------- -----------------------------CTCAGCCATTATAACCTCTGTGACCTGCACA TACACATCCAGGTGGCCTGCAGGAGCCAAGAAAT------------------GGGGAGCA GTCA-AAA-AACCAC-AAAGAAGGA-AAACAGCC-------------------------- ------------------AGTTCCTGGCTTAACTGATTAACCAACATTAC---------- ---A-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------TTACTATTGTGACTTGTCGCTGCCCTACCTTA GCTGGCCAATCGACT--------TT--GTGACATTC-TTCTTCTGG---------ACAAT GAATCTTA------------TGATCTCTCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------ATG----TACGTTGTA-------------- ---------------------------AC-CCCCTCCTC-TGCTAACA-----ATAA-CC ACA-TTTTACTGTAATTTTCCATTACCTACCCA-ACTCC--------------------- ----CTTCC-C--CATTTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACTTGCACCC AAGTG-------A-ATAAACAGCTTTATTGCTCACACAAATCCTG-TT----GGTGGTCT CTTCACACGGACGTGCTTG-----A--CA >LTR7C_chr2_Sltr_717__chr2_222670573222671040_+_ -GTCAGGCCTCTGAGCCAAAG--------------------------------------- -----------------------------CTCAGCCATTATAACCTCTGTGACCTGCATG TACACATCCAGGTGGCCTGCAGGAGCCAAGAAGC------------------CTGGAGCA GCAA-AAA-AAACGC-AAAGAAGTA-AAACAGCC-------------------------- ------------------AGTTCCTGCCTTAACTGATTAACCAACATTAC---------- ---A-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------TTACCATTGTGACTTGTCCCTGCCCTACCTTA GCCGATCAATCGACT--------TT--GTGACATTC-TTCTTCTGG---------ACAAT GAGTCTTA------------TGATCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------CTG----TACCTTGTG-------------- ---------------------------AC-CCCTTCCTC-TGCTAACAATAG-ATAA-CC ACC-TTCTACTGTAATTTTCCATTACCTAGACA-ACTCCTATAA-----------AGCA- ACCCCTTCC-C--CATCTCCCTTCGCTGACTCTTT-TTCGGACTCAGCTGACTTGCACCT AAGTG-------A-ATAAACAGCCTTGTTGCTCACACAATGCCTG-TT----GGTGGTCT CTTCACACGGATGCGCTTG-----A--CA >LTR7C_chr4_Sltr_1040__chr4_189391968189392437__ TGTCAGGCCTCTGAGCCAAAG--------------------------------------- -----------------------------CTCAGCCATTATAACCCCTGTGACCTGCACA TACACATCCAGGTGGCCTGCAGGAGCCAAGAAGT------------------CTGGAGCA GCGA-AAA-AACCCC-AAAGAAGTA-AAACAGCC-------------------------- ------------------AGTTCCTGCCTTACCTGATTAACCAAAATTAC---------- ---A-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------TTACCATTTTGACTTGTCCCTGCCCTACCTTA GCTGATCAATCGACT--------TT--GTGACATTC-CTCTTCTGG---------ACAAT GAGTCTTA------------TGATCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------ATG----TACCTTGTA-------------- ---------------------------AC-CCCCTCCTC-TGCTAACAATAG-ATAA-CC ACC-TTTTACTGTAATTTTCCATTACCTACCCA-ACTCCTATAA-----------AGCA- ACCCCTTCC-C--CATCTCCCGTCGCTGACTCTCTGTTTGGACTCAGCCCATTTGCACCC AAGTG-------A-ATAAACATCCTTGTTACTCACACAAAGCCTG-TTT---GGTGGTCT CTTCACACGGACGCGCTTG-----A--C- >LTR7C_chr7_Sltr_fr_1355__chr7_8482310784823571_+_ -GTCAGGCCTCTGAGCCAAAG--------------------------------------- -----------------------------CTCAGCCATTATAACCTCTGTGACCTGCACA CACACATCCAGGTGCCCTGCAGGAGCCAAGAAGT------------------CTGGAGCA GCCA-AAA-AACCAC-AAAG---TC-AAACAGCC-------------------------- ------------------AGTTCCTCCCTTAACTGATTAGCCAAAATTAC---------- ---A-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------TTACCATTGTGACTTGTCCCTGCCCTACCTTA GCTGATCAGTCAACT--------TT--ATGACATTC-TTCTTCTGG---------ACAGT AAGTCTTA------------TGATCTTCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------ATG----TACCTTGTG-------------- ---------------------------AC-CCCCTCCTC-CTCTAACAATAG-ATAG-CC ACC-TTTTACCGTAATTTTCCATTACCTATCCA-ACTCCTATAA-----------AACA- ACCTCTTCC-C--CATCTCCCTTCGCTGACTTTCTTTTCGGACTCAGCCCACTTGCAGCC AAATG-------A-ATAAAAAGCTTTATTGCTCACACAAAGCCTG-TTT---GGTGGTCT CTTCACATGGACGTGCTTG-----A--C- >LTR7C_chrX_Sltr_1507__chrX_116014369116014836_+_ -GTCAGGCCTCTGAGCTGAAA--------------------------------------- -----------------------------CTCAGCCATTATAACTTCTGTGACCTGCACA TACACATCCAGGTGGCCTGCAGGAGCCAAGAAGT------------------CTGGAGCA GCCA-AAA-AATCAC-AAAGATGTA-AAACAACC-------------------------- ------------------AGTTCCTGCCTTAACTGATTAACCAAAATTAC---------- ---A-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------TTACCATTGTGACTTGTCCCTGCCCTACCTTA GCTGATCAATCAACT--------TT--GCAACATTC-TTCTTTTGG---------ACAAT GAGTCTTA------------TGATCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------ATG----TACCTTGTG-------------- ---------------------------AC-CCCC-CCTC-TGCTAACAATAG-ATAA-CC ACC-TTTTACTGTAATTTTCCATTACCTACCCA-ACTCCTATAA-----------AGCA- AACCCTTCC-C--CATCTCCCTTCACTGACTCTCTTTTCAGACTGAGCCCACTTGCACCC AAGTG-------A-ATAAACAGTCTTATTGCTCACACAAAGCCTG-TTT---GTTGGTCT CTTCACATGGACGCGCTTG-----A--CA >LTR7C_chr3_Sltr_827__chr3_118146452118146919__ TGTTAGGCCTCTGAGCCGAAG--------------------------------------- -----------------------------CTCAGCCATTATAACCCCTGTGAGCTCCACA TATACATCCAGGTGGCCTGCAGGAGCCAAGAAGT------------------CTGGAGCA GCCA-AAA-AACCAC-AAAGAAGTA-AAACAGCC-------------------------- ------------------AGTTCCTGCCTTAACTGAATAACCAGCATTAC---------- ---A-------------------------------------------------------- ----------------------------------------------------------GC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------TTACTACTGTGACTTGTCCCTGCCTTACCTTA GCTGATCAATTGACT--------TT--GTGACATTC-TTCTTCTGG---------ACAAT GAGTCTTA------------TGATCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------ATG----TACCTTATG-------------- ---------------------------AC-CCCCTCCTC-TGCTAACAATAG-ATAA-CC ACC-TTTCACTGTAATTTTCCATTACCTACCCA-ACTCCTATAA-----------AACA- ACCCTTTTC-C--CATCTCTCTTCGCTGACTTTCTTTTCGGACT-AGCCCACTTGCACCC AAGTG-------A-ATAAACAGCTTTATTACTCACACAAAGCCTG-TTT---GGTGGTTT CTTCACATGGACATGCTTG-----A--C- >LTR7C_chr10_Sltr_142__chr10_4605455546055019__ TGTCAGGCCTCTGAGCTGAAG--------------------------------------- -----------------------------CTCAGCTATTATAACCCCTGTGACCTGCACA TATATGTCCAGATGGCCTGCAGGAACCAAGAAGT------------------CTGGAGCA GCCA-AAA-AACCAC-AAAG---TA-AAACAGCC-------------------------- ------------------AGTTCCTGCCTTAACTGAGTAACCAAAATTAC---------- ---A-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------TTACCATTGTGACTTGTCCCTGCCCTACCTTA GCTGATCAACCAACT--------TT--GTGACATTC-TTCTTCTGG---------ACAAT GAGTCTTA------------TGATCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------ATG----TACCTTGTG-------------- ---------------------------AC-CCCCTCCTC-TGCTAACAATAG-ATAA-CC ACG-TTTTACTGTAACTTTCCATTACCTACCCA-ACTCCTATAA-----------AGCA- ATCCCTTCC-C--CATCTCCCTTTGCTGACT--CTTTTCGGACTCAGCCCACCTGCACCC AAGTG-------A-ATTAAAAGTTTTATTCCTCATACAAAGCCTG-TTT---GGTGGTTT CTTCACATGGACGTGCTTG-----A--C- >LTR7C_chr8_Sltr_fr_1387__chr8_137227737137228202_+_ -GTCAGACCTCTAAGCTGAAG--------------------------------------- -----------------------------CTCAGCCATTATAATCCCAGTGACCTGCACA TATATGTCCAGATGGCCTGCAGGAGC-AAGAAGT------------------CTGGAGCA GCCA-AAA-AACCAC-AAAGAAGTA-AAACATCC-------------------------- ------------------AGTTCCTGCCTGAACTGATTAACCAACATTAC---------- ---A-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------CTACCACTGTGACTTGTCCCTGCCCTACCTTA GGTGATCAATAGACT--------TT--GTGACATTC-TTCTTCTGG---------ACAAT GAGTCTTA------------TGATCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------ATG----TACCTTGTG-------------- ---------------------------AC-CCCCTCTTC-TGCTAACAATAG-ATAA-CC ACC-TTTTACTGTAATTTTCCATTACCTACCCA-ACTCCTATAA-----------AACA- ACCCCTTCC-C--CATCTCCCTTCACTGACTCACTTTTTGGACTCAGCCCACCTGCACCC AGGTG-------A-ATTAAAAGCTTCATTGCTCACCCAAAGCCTG-TTT---GGTGGTCT CTTCACATGGACGTGCTTG-----A---- >LTR7C_chr10_Sltr_133__chr10_1858295018583421_+_ -GTCAGGCCTCTGAGACGAAG--------------------------------------- -----------------------------CTCAGCCATTATAACCCCTGTGACCTGCACA TACACATCCAGATAGCCTGCAGGAGCCAAGAAGT------------------CTGGAGCA GTCA-AAA-AACCAC-AGCCAAAAA-CCACAGCC-------------------------- ------------------AGTTCCTGCCTTAACTGATCAACTAAAATTAT---------- ---A-------------------------------------------------------- ----------------------------------------------------------AT ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------TTACTATTGTGACGTGTCCCTGCCCTACCTTG GCTGATCAGTCAACT--------TT--GTGACATTC-TTCTTCTGG---------ACAAT AAGTCTTA------------GGATCTCTCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------ACG----CATCTTGTA-------------- ---------------------------AC-CCCCTCCTC-TGCTAACAATAG-ATAA-CC ACC-TTTTACCGTAATTTGCCATTACCTACCCA-ACTCCTATAA-----------GGCA- ACCCCTTCC-T--TATCTCCCTTTGCTGACTCCCTTTTCGGACTCAGCCCACCTGCACCC AGGTG-------A-ATTAAAAGCTTTGTTGCTCACACAAAGCCTG-CTT---GGTGGTCT CTTCACACAGACGCGGTTG-----A--CA >LTR7C_chr11_Sltr_fr_184__chr11_1688897616889407_+_ -GTCAGGCCTCTGAGCTGAAG--------------------------------------- -----------------------------CTCAGCTATTGTAACCCCTGTGACCTGCACA TATACACCCAGATGGCCTGAAGGAGCCAAGAAGT------------------CTGGGGCA GCCG-AAA-AACCACAAAAGAAGTA-AAACAGCC-------------------------- ------------------AGTTCCTGCCTTAACTGATTAACCAACATTAC---------- ---A-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------CCACCATTGTGACTTGTCCCTGCCCCACCTTA ACCGATCAATCAACT--------TT--GTGACATTC-TTCTTCTGG---------ATAAT AAGTCTTA------------TGATCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------ATG----TACCTTGTG-------------- ---------------------------AC-CTCCTCCTC-TGCTAACAATAG-ATGA-CC ATC-TTTTACCGTAATTTTCCATTACCTACCCA-ACTCCTATAA-----------AGCA- ACCCCTTCC-C--CATCTCCCTTCGCTGACTCCTTTCTCAGACTCAGTCCACCTGCACCC AGGTG-------A-ATTAAAAGCTTTATTGCTCAAAAAAA-------------------- ----------------------------- >LTR7C_chr19_Sltr_600__chr19_5434794954348418__ TGTCAGGCCTCTGAGCTGAAG--------------------------------------- -----------------------------CTCAGCTATTGTAACCCCTGTGACCTGCACA TATACACCCAGATGGCCTGAAGGAGCCAAGAAGT------------------CTGGGGCA GCCG-AAA-AACCACAAAAGAAGTA-AAACAGCC-------------------------- ------------------AGTTCCTGCCTTAACTGATTAACCAACATTAC---------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------CCACCATTGTGACTTGTCCCTGCCCCACCTTA ACCGATCAATCAACT--------TT--GTGACATTC-TTCTTCTGG---------ATAAT AAGTCTTA------------CGATGTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------AGG----TACCTTGTG-------------- ---------------------------AC-CTCCTCCTC-TGCCAACAATAG-ATGA-CC ACC-TTTTACCGTAATTTTCCATCACCTACCCA-ACTCCTATAA-----------AGCA- ACCCCTTCC-C--CATCTCCCTTCGCTGACTCCTTTCTCAGACTCAGTCCACCTGCACCC AGGTG-------A-ATTAAAAGCTTTATTGCTCATACAAAGCCTG-TTT---GCTGGTCT CTTCACATGGACACGCTTG-----G--C- >LTR7C_chr6_Sltr_1217__chr6_143064809143065278__ TGTCAGGCCTCTAAGCCGAAG--------------------------------------- -----------------------------CTCAGCCATTGTAACCCCTGTGACCTACACA TATACATCCAGATGGCCTGCAGGAGCCAAGAAGT------------------CTGGGGCA ACCG-AAA-AACCACAAAAGAAGTA-AAACAGCC-------------------------- ------------------AATTCCTGCCTTAACTGATTAACCAACATTAC---------- ---A-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------CCACCGTTGTGACTTGTCCCTGCCCTACCTTA ACTGATCAACCGACC--------TT--GTGACATTC-TTCTTCTGG---------ACAAT AAGTCTTA------------TGATCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------ATG----TACCTTGTC-------------- ---------------------------AC-CCCCTTCTC-TGCTAACAATAA-ATAA-CC ACC-TTTTACTGTAATTTTCCATTAGCTACCCA-ACTTCTATAA-----------AGCA- ACCCCTTCC-C--CATCTCCCTTCGCTGACTCCTTTCTCAGACTCAGTCCGCCTGCACCC AGGTG-------A-ATTAAAAGCTTTATTGCTCACACAAAGCCTG-TTT---GGTGGTCT CTTCACACAGACACGCTTG-----A--C- >LTR7C_chr16_Sltr_473__chr16_31636103164081_+_ -GTCAGGCCTCTGAGCTAAAG--------------------------------------- -----------------------------CTCAACCATTATAACCCCTGTGACCTGCACA TATACGTGCAGATGGCCTGCAGGAGCCAAGAAGT------------------CTGAAGAA GCCA-AAA-AAACCACAAAGAAGTA-TAACAGCC-------------------------- ------------------GGTTCCTGCCTTAAGTGATTAACCAACATTAC---------- ---A-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------CTACCACTGTGACTTGTCCCTGCCCTACCTTG GCTGATCAATCGACT--------TT--GTGACATTC-TTCTTTTGG---------ACAAT AAATCTTA------------TGACCTCCCT-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------ACA----TACCTTGTG-------------- ---------------------------AC-CCCCTCCTC-TGCTAACAATAG-ATAA-CC ACC-TTTTACTGTAATTTTCCATTACCTACCCA-ACTCCTACAA-----------AGCA- ACCCCTTCC-C--CATCTCCCTTCGCTGACTCCTTTTTCGGACTCAGTCCGCCTGCACCC AGGTG-------A-TTAAAAAGTTTTACTGCTTACACAAAGCCTG-TTT---GGTGGTCT CTTCTCACAGATGTGCTTG-----A--CA >LTR7C_chrX_Sltr_1539__chrX_2240435222404814_+_ -GTCAGGCCTCTGAGTTGAAG--------------------------------------- -----------------------------CTCAGCCATTGTAACCCCTGTGACCTGCATG TATGTGTCCAGATGGCCTGCAGGAACCAAGAAGT------------------CTGGGGCA GCC--AAA-AACCAC-AAAGAAGTA-AAACAGCC-------------------------- ------------------AGTTTCTGCCTTAACTAATGAACCAACATTAC---------- ---A-------------------------------------------------------- ----------------------------------------------------------CC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------CTACTATTGTGGCTTGACCCTGCCATACTTT- ---GATCAGT-GACT--------TG--GTGACATCC-TTCTTCTGG---------ACAAT GAGTCTTA------------TGATCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------GCG----CACCTTGTG-------------- ---------------------------AC-CTCCTCCTC-TGCCAACAATAG-ATAA-CC GCC-TTTTACTGTAATTTTCCATTACCTACCCA-ACTCCTATAA-----------AGCA- ACCCCTTCC-C--CATCTCCCTTCGCTGACTCTCTCTTTGGACTCAGCCCACTTGCACCC AAGTG-------A-ATAAACAGCCTTGTTGCTCACACAAAGCCTG--TT---GGTGGTCT CTTCATAAGGACGCGCTTG-----A--CA >LTR7C_chr2_Sltr_715__chr2_217332781217333210__ TGTCAGGCCTCTGAGCCCAAG--------------------------------------- ----------------------------------------------------CCTGCACG TATGCATCCAAATGGC------------------------------------CTGAGGCA ATC--GAA-AACAACAAAAGAAGTG-AAACAGCC-------------------------- ------------------AGCTCCTGTCTTAACTGATTGACCAACCTTAA---------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ -------------------------------CCATTATGACTTGTTCCTGCCCTGCCCCA ACTGATCAATCGACC--------TC--ATGACATTC-TTCTTCTGG---------ACAAT GAGTCTTA------------TGATCTCCGC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------ATG----TGCCTTGTG-------------- ---------------------------AC-CCCCTCCTC-CGCCAGCAATAG-ATAA-CC ACC-TTTTACTGTAATTTTCCATTACCCACCCA-ACTCCTATAA-----------AGCA- ATCCCTTCC-C--CA--CTCCTTCACGGACTCTCTTTTCGGACTCAGCCCACTTGCACCC GAGTG-------A-ATAAACAGCCTTGTTGCTCACACAAAGCCTG--TT---GGTGGTCT CTTCACATGGATGTGCTTG-----A--C- >LTR7C_chr1_Sltr_39__chr1_212429923212430394__ TGTCAGGCCTCTGAGCTGAAG--------------------------------------- -----------------------------CTCAGCCATTGTAACCCTTGTGACCTGCACC TATAAGTCCAGATGGCCTGCAGGAGCCAAGAAGT------------------CTGGAGCA GCC-AAAA-AAACACAAAAGAAGTG-CAACAAAA-------------------------- ------------------AGCTCCTGCCTTGACTGATTGACCAGCCTTAC---------- ---G-------------------------------------------------------- ----------------------------------------------------------AC GTT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------CCACCATTATGAATTGTTCCTGTCCTGCCCCA ACTGATCAATCGACC--------TT--GTGACATTC-TTCTTCTGG---------ACAAT GAATCTTA------------TGATCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------ATG----GACCCTGTG-------------- ---------------------------AC-CCCCTCCTC-TGCTGACAATAG-ATAA-CC ACC-TCTAACTGTAACATTCCACTGCCTACCTC-AGTCCTATAA-----------AGCT- GCCCCTCTC-C--TATCTACCTTCGCTGACTCTCTTTTCGTACTCAGCCCACTTGCACCC AAGTG-------A-ATAAACAGCCCTGTTGCTCACACAAAGCCTG--TTTA-GGTGGTCT -TCTATACGGACACATGTG-----A--C- >LTR7C_chr7_Sltr_1325__chr7_150312817150313286_+_ -GTCAGGCCTCTGAGCTGAAG--------------------------------------- -----------------------------CTCAGCCATTGTAACCCCTGTGACCTGCACA TATATGTCCAGATGGCCTGCAGGAGCCAAGAAGT------------------CTGGAGCA GCT-GAAA-AACCACAAAAGAAGTG-AAACAGCC-------------------------- ------------------AGCTCCCGCCTTAACTGATTGACCAACCTTAT---------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------CCACCATTATGACTTGTCCTGGCCCTGCCCCA ACTGATTAATTGACC--------TT--GTGACATTC-TTCTTTTGG---------ACAAT GAATCTTA------------TGATCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------ATG----CACCCCGTA-------------- ---------------------------AC-CCCCTCCTC-TGCTAACAATAT-ATAA-CC ACC-TTTAACTGTAACTTTCCACTACCTACCCA-AGTCCTATAA-----------AGCT- GCCTCTCTC-C--TACCTCCCTTCGCTGACTCTCTTTTCAGACTCAGCCCACTTGCACCC AAGTG-------A-ATAAATAGCCTTACTGCTCACACAAAACCTG--TTTA-GGTGGTCT -TCTCTACGGACACACGTG-----A--CA >LTR7C_chr14_Sltr_420__chr14_8627046686270931_+_ -GTCAGGCCTCTGAGCCAAAG--------------------------------------- -----------------------------CTCAGCCATTATAACCCCTGTTACCTGCACA TATATGTCCAGATGGCCTGCAGGAGCCAAGAAGT------------------CTGGAGCA GCC-AAAA-AACCACAAAAGAAGTG-AAACAGCC-------------------------- ------------------AGCTCCTGCCTTAACTGATTGACCAACCTTAT---------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------CCACCACTGTGACTTGTTCCTGCCCTGCCCCA ACTGATCAATCAACC--------TT--GTGACATTC-TTC---TGG---------ACAAT AAGTCTTA------------TGATCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------ATG----AACCTTGTG-------------- ---------------------------AC-C-CCTCCTC-TGCTAATAATAG-ATAA-CC ACC-TTTAACTGTAACTTTCCACTGCCTACCCA-AGCCCTATAT-----------TGCT- GCCCCTCTC-C--TATCTCCCTTCACTCACTCTCTTTTCAGACTCAGCCCACTTGCACCC AAGTG-------A-ATAAACAGCCTTGTTGCTCACACGAAGCCTG--TTTA-GGTGGTCT -TCTATATGGATACTCATG-----A--CA >LTR7C_chr10_Sltr_fr_125__chr10_112328423112328890_+_ --TCAGGCCTCTGAGCCAAAG--------------------------------------- -----------------------------CTCAGCCATTGTAACCCATGTGACCTGCACA TGTATGTCCAGATGGCCTGCAGGAGCCAAGAAGT------------------CTGGAGTA GCT-GGAA-CACCACA-AAGAAGTG-AAACAGCC-------------------------- ------------------AGTTCCTGCCTTAACTAATTAACCCACCTTAT---------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------CTACCATTATGACTTGTTCCTACCCTGCCCCA ACTGATCAATTGACC--------CT--GTGACTTTC-TTCTTCTGG---------ACAAT GAGTCTTA------------TGATCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------ATA----CACCTTGTG-------------- ---------------------------AC-CCCCTCCCC-TGCTAACAATAG-ATAA-CC ACC-TCTAACTGTAACTTTCCACTGCCTACCCC-AGTTCTATAA-----------AGCT- ACCCCTCTC-C--TACCTCCCTTCACTGACTCTCTTTTTGGACTCAGCCCACTTGCATCC AAGTG-------A-ATAAACAGCCTTGTTGCTCACACAAAGCCTG--TTTA-GGTGGTCT -TCTATACGGACACGTGTG-----A--TA >LTR7C_chr18_Sltr_529__chr18_17857531786220__ TGTCAGGCCTCTGAGCCAAAG--------------------------------------- -----------------------------CTCAGCCATTGTAACCCCTGTGACCTGCCCA TATATGTCCACATGGCCTGCAGGAGCCAAGAAGT------------------CTGGAACA ACC-GAAA-AACCACAAAAGAAGTG-AAACAGCC-------------------------- ------------------AGCTCCTGCCTTAATTGATTGACCAACCTTAC---------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------CCACCATTATGACTTGTTCTTGCCCTGCCCCA ACTCATCAATCGACC--------TT--GTGACATTC-TTCTTCTGG---------ACAAC GAGTCTTA------------TGATCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------ATA----CAACTTGTG-------------- ---------------------------AC-CTTCTCCCC-TGCTAACAATAG-ATAA-CC ACC-TCTAACTGT-ACTTTCCACTGCTTACCCC-AGTCCTATAA-----------AGCT- GCCCCC-TC-C--TATCTCCCTTCACTGACTCTCTTTTTGGACTCAGCCCAGTTGCACCC AAGTG-------A-ATAAACAGCCTTGTTGCTCACACAAACCCTG--TTTA-GGTGGTCT -TCCATACGGACACGCATG-----A--C- >LTR7C_chr3_Sltr_934__chr3_6358291263583377__ TGTCAGGCCTCTTAGCCAAAG--------------------------------------- -----------------------------CTCAGCCATTGTAACCCCTGTGGCCTGCACA TATATGTCCACATGGCCTACAGGAGCCAAGAAGT------------------CTGGAGCA GCT-GAAA-AACCACAGAAGAAGTG-AAACAGCC-------------------------- ------------------ATCTCCTGCCTTAACTGATTGACCAACCTTAT---------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------CCACCATTATGACTTGTTCCTGCCCTGCCCCA ACTGATCAACTGACC--------TT--GTGACATTC-TTCTTCTGG---------ACAAT GAGTCTTA------------TGATCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------ATG----CACTTTGTG-------------- ---------------------------AC-CTTCT---C-TGCTAACAATAG-ATAA-CC ACC-TCAGTCTGTAACTTTCCACTGCCTACCCC-AGTCCTATAA-----------AGCT- GCCCCTTTC-C--TGTCTCCCCTCGCTGACT-TCTTTTTGGACTCAGCCCACATGCACCC AAGTG-------A-ATCAACAGCCTTGTTGCTCACACAAAGCCTG--TTTA-GGTGGTCT -TCTATACGGACACGCGTG-----A--C- >LTR7C_chr2_Sltr_646__chr2_101248690101249149__ TGTCAGGCCTCTGAGCCAAAG--------------------------------------- -----------------------------CTCATCCGTTGTAACCCCTGTGACCTGCAC- -----GTCCAGATGGCCTGCAGGAGCCAAGAAGT------------------CTGGAGCA GCC-AAAA-AACCACAAAAGAAGTG-AAACAGCC-------------------------- ------------------AGTTCCTGCCTTAACTAATTAATCCACCTTAT---------- ---G-------------------------------------------------------- ----------------------------------------------------------GC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------CTACCATTATGACTTGCTCCTGCCCTGCCCCA ACTAATCAATTGACC--------TC--GTGACATTC-TTCTTCTGG---------ACAAT GAGTTTTA------------TGATCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------ATG----CACCTTGTG-------------- ---------------------------AC-CCCCTCCTC-TGCTGACGATAG-ATAA-CC ACC-TTTAACTGTAACTTTCCACTGCCTACCCA-AGCCCTATAA-----------AGCT- GCC-CTTTC-C--TATCTCCCTTCGCTGACTCTCTTTTTGGACTCATCCCACTTGCACCC AAGTG-------A-ATAAACAGCCTTGTTGCTCACACAAAGCCTG--TTTA-GGTGGTTT ----ATATGGACACACGTG-----A--C- >LTR7C_chr4_Sltr_1052__chr4_3477335934773845__ TGTCAGACCTCTGAGCCGAAG--------------------------------------- -----------------------------CTCAGCCATTGTAACCCCTGTGACCTGCATA TATACGTCCAGTTGGCCTGCAGGAGCCAAGAAGT------------------CTGGAGCC ATC-GAAA-AACCACA-AAGAAATG-AAACAGCC-------------------------- ------------------AGTTCCTGCTTTAACTAATTAACCCACCTTAG---------- ---G-------------------------------------------------------- ----------------------------------------------------------GC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------CTACCATTATGACTTGTTCCTGCCCTGCCCCA ACTGATCAATCGACC--------CT--GTGACATTC-TTCTCCTGG---------ACAAT GACTCCCA------------TCATCGCTCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------ATG----CACCTTGTG-------------- ---------------------------AC-CCCCTCCCC-TGCTAACAATAG-ATAA-CC ACC-TTTAACTGTAACTTTCCACTGCCTACCCA-AGCCCTATAA-----------AACT- GCCCCTC-G-C--TATCTCCCTTCGCTGACTCTCTTTTCAGACTCAGCCAACTTGCACCC AAGTG-------A-ATAAACAGCCTTGTTGCTCACACTAAACCTG--TTTA-GGTGGTCT -TCTATACGGACACACATG-----A--C- >LTR7C_chr12_Sltr_257__chr12_128019852128020321__ TGTCAGGCCTCTGAGCCAAAG--------------------------------------- -----------------------------CTCAGCCATTGTAACCCCAGCGACCTGCACA TATACGTCCAGATGGCCCACAGGAGCCAAGAAGT------------------CTGGAGTA GCC-GAAA-AACCAC-AAAGAAGTG-AAACAGAC-------------------------- ------------------AGTTCCTGCCTTAACTAATTAACCCACCTTAC---------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------CTACCATTAAGACTTGTTCCTGCCCCGCCCCA ACTGATCGATCGACC--------CT--GTGACATTC-TTCT---GG---------ACAAT GAGTCCCA------------TGATCTCTCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------ATG----CACCTTGTG-------------- ---------------------------AC-CCCCTCCCC-TGCTGACAACAG-ATAA-CC ACC-TTTAACTGTAGCTTTCCACTGCCTACCCA-GGCCCTATAA-----------AGCT- GCCCCTGTC-C--TATCTCCCTTCACTGACTCTCTTTTCGGGCTCAGCCCACTTGCACCC AAGTG-------A-ATAAACAGCCTTGTTGCTCACACAAAGCCTG--TTTA-GGTGGTCT -TCTATACGCACACGCGTG-----A--C- >LTR7C_chr19_Sltr_595__chr19_4826971748270187_+_ -GTCAGGCCTCTGAGCCGAAG--------------------------------------- -----------------------------CTCAGCCATTGTAACCCCTGTGACCTACACA TATACGTCCAGATGGCCTGCAGGAGCCAAGAAGT------------------CTGGAGCA GCC-GAAA-AACCAC-AAAGAAGTG-AAACAGCC-------------------------- ------------------AGTTCCTGCCTTAACTGATTAACCCACCTTAT---------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------CCACCATTATGACTTGTTCCTGCCCTGCCCCA ACTGATCAGTCGACC--------CT--GTGACATTC-TTCTCCTGG---------ACAAT GAGTCCCA------------TGATCTCTCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------A---------ATG----CACCTTGTG-------------- ---------------------------AG-CCCCTCCCC-TGCTGACAACAA-ATAA-CC ACC-TTTAACTGTAACTTTCCACTGCCTACCCC-AGCCCTATAA-----------AGCT- GCCCCTCTC-C--TATCTCCCTTCGCTGACTCTCTTTTCCAACTCAGCCCACTTGCACCC AAGTG-------A-ATAAACAGCCTTGTTGCTTACACAAAGCCTG--TTTA-GGTGGTCT -TCTATACGGACACGCGTG-----A--CA >LTR7C_chr19_Sltr_fr_557__chr19_1507028915070754__ -GTCAGGCCTCTGAGCCGAAG--------------------------------------- -----------------------------CTCAGCCATTGTAACTCCTGTGACCTGCACA TATACGTCTAGATGGCCTGCAGGAGCCAAAAAAT------------------CTGGAGCA GCC-GAAA-AACCAC-AAAGAAGTG-AAACAGCC-------------------------- ------------------AGTTCCTGTCTTAACTAATTAACCCACCTTAT---------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------CCACCATTATGACTTGTTCCTGCCCTGCCCCA ACTGATCAATCAACC--------CT--GTGACATTC-TTC---TGG---------ACAAT GAGTCCCA------------TCATCTCTCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------ATG----CACCTTGTG-------------- ---------------------------AC-CCCCTCCTC-TGCTGACAATAG-ACAA-CT ACC-TTTAACTGTAACTTTCCACGGCCTACCCA-AGCCCTATAA-----------AGCT- GCTCCTCTC-C--TATCTCCCTTTGCTGACTCTCTTTTTGGACTCAGCCCACTTGCACCC AAGTG-------A-ATCAACAGCCTTGTTGCTCACACAAAGCCTG--TTTA-GGTAGTCT -TCTATACGGACACGCGTG-----A--C- >LTR7C_chr19_Sltr_559__chr19_1583569115836170_+_ -GTCAGGCCTGTGAGCTGAAG--------------------------------------- -----------------------------CTTAGCCATTGTAACCCCTGTGACCTGCACA TATCCGTCCAGGTGGCCTGCAGGAGCCAAGAAGT------------------CTGGAGCA GCC-GAAA-AACCAC-AAAGAAGTG-AAACAGCC-------------------------- ------------------AGTTCCTGCCTTAACTAATTAACCCACCTTAC---------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------CCACCATTATGACTTGTTCCTGCCCTGCCCCA ACTGATCAATCAACC--------CT--GTGACATTC-TTCTCCTGG---------ACAAT GAGTCCCA------------TCATCTCTCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------ATG----CACCTTGTG-------------- ---------------------------AC-CCCCTCCTC-TGCTGA----GG-ATAA-CC ACC-TTTAACTGTAACTTTCCACG-CCTACCCA-AGCCCTATAA-----------AGCT- GCCCCTCTC-C--TATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCACTTGCACCC AAGTG-------A-ATTAACAGCCTTGTTGCTCACACAAAGCCTG--ATTG-GGT-GTCT -TCTATACGGACACGCGTG-----A--CA >LTR7C_chr8_Sltr_1397__chr8_52902325290697__ TGTCAGGCCTCTGAGCCGAAG--------------------------------------- -----------------------------CTCAGCCATTGTAACCCCTGTGACCTGCACA TATAC----AGATGGCCTGCAGGAGCCAAGAAGT------------------CTGGAGCA GCT-GAAA-AACCACGAAAGAAGTG-AAACAGCC-------------------------- ------------------AGTTCCTGCCTTAATTGATTAACCAACTTTAT---------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------CCACTACTATGACTTGTTCCTGCCCTACCCTA ACTGATCAATCGGCC--------CT--GTGACATTC-TTCTCCTGG---------ACAAT AAGTCTCG------------TGATCTCTCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------ATG----CACCTTGTG-------------- ---------------------------AC-CCCCTCCCC-TGCTGACAACAA-AAAA-CC ACC-TTTAACTGTAACTTTCCACTGCCTACCCA-AGCGGTATAA-----------AGCT- GCCCCTCTC-C--TATCTCCCTTCACTGACTCTCTTTTCGGACTCAGCCCACTTGCACCC AAGTG-------A-GTAAACAGCCTTGTTGCTTACACAAAGCCTG--TCGA-GATGGTCT -TCTATACTGACACGTGTG-----A--C- >LTR7C_chr2_Sltr_655__chr2_125710590125711055_+_ -GTCAGGCCTCTGAGCCGAAG--------------------------------------- -----------------------------CTCAGCCATTGTAACCCCTGCGACCTGCACA TATACATCCCGATGGCCTGCAGGAGCCAAGAAGT------------------CGGGAGCA GCT-GAAA-AACCACAAAAGAAGTG-AAACAACC-------------------------- ------------------GGTTTCTGCCTTAACTGATTAACCCACCTTAC---------- ---A-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------CCACCACTAGGACTTGTCCCTGCCCTACCCTA ACTGATCAATCCATC--------CA--ATCA----A-TTCTCCTGG---------ACAAT GAGTCTCA------------TGATCTCTCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------ATG----CACCTTGTG-------------- ---------------------------AC-CCCCTCCCG-TGCTGACAACAG-ATAA-CC ACC-TTTAACTCTAACTTTCCACTGCCTACCCC-AGTCCTATAA-----------AGCT- GCCCCTCTC-T--TATCTCCCTTCACTGACTGTCTTTTTGGACTCAGCCCACTTGCATCC GAGTG-------A-ATAAACAGCCTTGCTGCTTACACAAAGCCTG--TTTA-GGTGGTCT -TCTATATGGACACGCATG-----A--CA >LTR7C_chr9_Sltr_1448__chr9_1578658715787054_+_ -GTCAGGCCTCTGAGCTGAAG--------------------------------------- -----------------------------CTCAGCCATTGAAACATCTGTGACCTGCACA TATATGTCCAGATGGCCTATAGGAGCCAAGAAGT------------------CTGGAGCA GCT-GAAA-AACCACAAAAGAAGTG-AAACAGCC-------------------------- ------------------AGTTCCTGCCTTAACTGAT-AACCCACCTTAC---------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------CCACCATTATGACTTGTTCCTGCCCTATCCTA ACTGATCAATCAACC--------TT--ATGACATTC-TTCTCCAGG---------ACAAT GGGTCTCA------------TGATCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------ATG----CACCTTTTG-------------- ---------------------------AC-CCC-TCCCC-TGCCGACAACAG-ATAA-CC ACC-TTCAACTGTAGCTTTCCACTGCCTACCCG-AGTCCTACAA-----------AGCT- GCCCCTCTC-C--TATCTCCCTTCACTGATTCTCTTTTTGGACTCAGACCACTTGCACCC AAGTG-------A-ATAAACAGCCTTGTTGCTTACACAAAGCCTG--TTTA-GGTGGTCT -TCTATATGGACACGCGTG-----A--CA >LTR7C_chrY_Sltr_fr_1597__chrY_1617444616174932__ -GTCAGGCCTCTGAGCCAAAG--------------------------------------- -----------------------------CTCAGCCATTATAGCCTCTGTGACCTTCACA TATACATCTAGATGGCCTGCAGGAGCCAAGAAGT------------------CTGGAGCA GCT-GAAA-AACCACAAGAGAAGTG-AAACAGCC-------------------------- ------------------AGCTCCTGCCCTAACTGATTGACCGACCTTAT---------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------CCACCATTATGACTTGTTTCTGCCTTGCCCAA ACTGATCAATTGATC--------CT--GTGACATTC-TTCTCCTGG---------ACAAT GAGTCTCA------------TCATCTCTCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------AGG----AACCATGTG-------------- ---------------------------AC-CCCCTCCCC-TACTGAAAACAG-ACAA-CC ACC-TTTAACTCTAACTTTCCACTGCCTACCCA-AGCCCTATAA-----------AGCT- TCTCCTCTC-C--TATCTCCCTTCTCTGACTTTCTTTTCAGACTCAGCCCACTTGCACCC AACTG-------A-ATAAACAGCCTTGTTGCTCACACAAAGCCTG--TTCA-CGTGGTCT -TCTATATGGACACGTG-G-----A--C- >LTR7C_chrY_Sltr_fr_1598__chrY_1641041616410902_+_ --TCAGGCCTCTGAGCCAAAG--------------------------------------- -----------------------------CTCAGCCATTATAGCCTCTGTGACCTTCACA TATACATCTAGATGGCCTGCAGGAGCCAAGAAGT------------------CTGGAGCA GCT-GAAA-AACCACAAGAGAAGTG-AAACAGCC-------------------------- ------------------AGCTCCTGCCCTAACTGATTGACCAACCTTAT---------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------CCACCATTATGACTTGTTTCTGCCTTGCCCAA ACTGATCAATTGATC--------CT--GTGACATTC-TTCTCCTGG---------ACAAT GAGTCTCA------------TCATCTCTCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------AGG----AACCATGTG-------------- ---------------------------AC-CCCCTCCCC-TACTGAAAACAG-ACAA-CC ACC-TTTAACTCTAACTTTCCACTGCCTACCCA-AGCCCTATAA-----------AGCT- TCTCCTCTC-C--TATCTCCCTTCTCTGACTTTCTTTTCAGACTCAGCCCACTTGCACCC AACTG-------A-ATAAACAGCCTTGTTGCTCACACAAAGCCTG--TTCA-CGTGGTCT -TCTATATGGACACGTG-G-----A--CA >LTR7C_chr3_Sltr_941__chr3_7653357576534043__ TGTTAGGTCTCTGAGCTGAAG--------------------------------------- -----------------------------CTCAGCCATTATAACCCCTGTGACCTGCACA CATATGTCCAGATGGCCTGCAGGAGCCAAGAAAT------------------CTGCAGCA GCC-GAAA-AACCACAAAAGAAGTG-AAACC-TC-------------------------- ------------------AGTTCCTGCCTTCACCGATTGACCCTCCATAT---------- ---G-------------------------------------------------------- ----------------------------------------------------------AC CTT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------CCACCACTATGACTCGTTCCTGCCCTACCCTA ACTGATCAGTTGACC--------CT--GGGACATTC-TTCTCCTGG---------ACAGT GAGTCTCA------------TGGTCTCTCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------ATG----CACCTTGTG-------------- ---------------------------AC-CCCCTCCCC-TGCTGACAACAG-ATAA-CC ACC-TTTGACTGTAACTTTCCACTGCCTACCCG-AGCCCTATAA-----------AGCT- GCCCCTCCC-C--TATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACTTGCACCC AAGTG-------A-ATAAGCAGCCTTGTTGCTCACACAAAGCCTG--TGCA-GGTGGTCT -TCTATACGGACTCGTGTG-----A--C- >LTR7C_chr1_Sltr_48__chr1_221958165221958635_+_ -GTCAACCCTTTGAGCCGGAG--------------------------------------- -----------------------------TTAAGCCACTGTAACCCCTGTGACCTACACA TATACATCCAGATGGCCTGCAGGAGCCAAGAAGT------------------CTGGAGCA GCC-AAAA-AACCACAAAAGAAGTG-AAACAGCC-------------------------- ------------------AGTTTCTGCCTTTGCTGATTAACCAACCCTAC---------- ---A-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------CCACCATTATGACTTGTTCCTGCTCTACCCTA ACTGATGAATTGACG--------TT--ATGACATTC-TTCTCCTGG---------ACAAT GGGTTTCA------------TGATCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------ATG----CACCTTGTG-------------- ---------------------------AC-CCCCTCCCC-TGCTGACTAGAG-ATAA-CC ACC-TTCAACTGTAACTTTCCACTGCCTACCCA-AGTCCTATAA-----------AGCT- GTCCCTCTG-G--TATCTCCCTTTGCTGACTCTCTTTTCAGACTCAGCCCATTTACACTC AAGTG-------G-ATAAACAGCCTTGTTGCTCACACAAAGCGTG--TTTA-GGTGGTCT -TCTATACAGACATGTGTG-----A--CA >LTR7C_chr22_Sltr_814__chr22_3903888539039353__ TGTCAGGCCTCTGAGCCGGAG--------------------------------------- -----------------------------CTAAGCCATTGTGACCCCTGTGAACTGCACA TATACATCCAGATGGCCTGCAGCAGCCAAGAAGT------------------CTGGAGCA GCC-AAAA-AAACACAAAAGAAGTG-AAACAGCC-------------------------- ------------------AGTTTCTCCCTTAACTGATTAACCAACCTTAA---------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------CCACCATTAGGACTTGTTCCTGCCCTACCCTA ACTGATCAATCGACC--------TT--ATGACATTC-TTCTTCTGG---------ACAAT GGGTCTCA------------TGGTCT-CCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------ATG----CACCTGGTG-------------- ---------------------------AC-CCCCTCCCC-TGCTGACAACAG-ATGA-CC ACC-TTCGACTGTAACTTTCCACCACCTACCCA-AGTCCTATAA-----------AGCT- GCCCCTCTC-T--TATCTCCCTTCGCTGACTCTCTTTTCAGACTCAGCCCACTTGCACCC AAGTG-------A-ATAAATGGCGTTATTGCTTACACAAAGCCTG--TTTA-GGTGGTTT -TCTATACAGACACGCATG-----A--C- >LTR7C_chr22_Sltr_817__chr22_3907571339076181__ TGTCAGGCCGCTGAGCCAGAG--------------------------------------- -----------------------------CTAAGCCATTGTGACCCCTGTGAACTGCACA TATACATCCAGATGGCCTGCAGCAGCCAAGAAGT------------------CTGGAACA GCC-AAAA-AAACACAAAAGAAGTG-AAACAGCC-------------------------- ------------------AGTTTCTCCCTTAACTGATTAACCAACCTTAA---------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------CCACCATTAGGACTTGTTCCTGCCCTACCCTA ACTGATCAATCGACC--------TT--ATGACATTC-TTCTTCTGG---------ACAAT GGGTCTCA------------TGGTCT-CCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------ATG----CACCTTGTG-------------- ---------------------------AC-CCCCTCCCC-TGCTGACAACAG-ATGA-CC GCC-TTTGACTGTAACTTTCCACCGCCTACCCA-AGTCCTATAA-----------AGCT- GCCCCTCTC-C--TATCTCCCTTCGCTGACTCTCTTTTCAGACTCAGCCCAGTTGCACCC AAGTG-------A-ATAAATGGCATTATTGCTTACACAAAGCCTG--TTTA-GGTGGTCT -TCTATATGGACATGTATG-----A--C- >LTR7C_chr13_Sltr_343__chr13_110957367110957837__ TGTCAGGCCTCTGAGCTGGAG--------------------------------------- -----------------------------CTAAGCCATTGTAACCCCTGTGACCTGCACG TATATATCCAGATGCCCAGCAGGAGCCAAGAAGC------------------CTGGAGCA GCC-AAGA-AACCACAAAAGAAGTG-AAACAGTC-------------------------- ------------------AGTTTCTGCCTTAACTGATTAACCAACCTTAC---------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------CCAACATTATGACTTGTTCCTGCCCTACCCTA ACTGATCAATCGACC--------CT--GTGACATTC-TTCTCCTGG---------ACAAT GGATCTCA------------TGATCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------ATG----CACCTTGTG-------------- ---------------------------AC-CCCCCCTCC-TGCTGACAACAG-ATAA-CT ACC-TTCAACTCTAACTTTCCACTGCCTACCCA-AGTCCTATAA-----------AGCT- GCCTCTCTC-C--TATCTTCCTTCGCTGACTCTCTTTTCGGACTCAGCCCACTTGCACCC AAGTG-------A-ATAAACAGCCTTGTTGCTTACACAAAGCCTG--TTTA-GGTGGTCT -TCTATATGGATACGCGTG-----A--C- >LTR7C_chr2_Sltr_665__chr2_1486322114863689__ TGTCAGGCCTCTGAGCCGGAA--------------------------------------- -----------------------------CTAAGCCATTGTAACCCCTGTGACCTGCATG TATACATCCAGATGGCCTGCAGGAACCAAGAAGT------------------CTGGAGCA GCC-GTGA-AACCACAAAAATAGTG-AAACAGTC-------------------------- ------------------AGTTTCTGTCTTAACTGATTAACCAACCTTAC---------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------CTACCATTATGACTTGTTCCTGCCCTACCCTA ACTGATCAATTGATC--------TT--ATGACATTC-TTCTCCTGG---------ACAAT GGATCTCG------------TGATCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------ATG----TACCTTGTG-------------- ---------------------------AC-CCCCT-CCC-TGCTGACAACAG-ATAA-TC ACT-TTCAACTGTAACTTTCCACTGCCTACCCA-AGTCCTATAA-----------AGCT- GCCCCTCTC-C--TATCTCCCTTC-CTGACTCTCTTTTCAGACTCAGCCCACTTGCACCC AAGTG-------A-ATAAACAGTCTTGTTGCTTATACAAAGCCTG--TTTA-GGTGGTCT -TCTATATGGACATGCATG-----A--C- >LTR7C_chr3_Sltr_fr_899__chr3_2118570421186171__ -GTCAGGCCTCTGAGCCAGAA--------------------------------------- -----------------------------CTACGCCATTGTAACCCCTGTGACCTGCACG TATACATCCAGATGGCCTGCAGGAGCCAAGAAAT------------------TTGGAGCA GCT-GAAG-AACCAAAAACGACGTG-AAACAGCC-------------------------- ------------------AGTTTCTGCCGTAACTGATTAACCAACCTTAT---------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------CCACCATTATGACTTGTTCCTGCCCTACCTTA ACTGACCAATCGACC--------TT--ATGACATTC-TTCTCCTGG---------ACAAT GGATCTCT------------TGATCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------ATG----CACCTGGTG-------------- ---------------------------AC-CCCCT-CCC-TGCTGACAAAAG-ATAA-CC ACC-TTCAACTGTAACTTTCCACTGCCTACCCA-AGTCCTATAA-----------AGCT- GCCCCTCTC-C--TGTCTCTCTTCACTGATTCTCTTTTCGGACTCAGCCCACTTGCACCC AAGTG-------A-ATAGACAGCCTTGTTGCTTATACAAAGCCTG--TTTA-GGTGGTCT -TCTATATGGACACGTGTG-----G---- >LTR7C_chr3_Sltr_903__chr3_2630697126307435__ TATCAGGCCTCTGAACCAGAA--------------------------------------- -----------------------------CTAAGCCATTGTAACCCCTGTGACCTGCACA TATACATCCAGATGGCCTGCAGGGGCCAAGGAGT------------------CTGGAGCA GCT-GAAA-AACCACAAAAGAAGTG-AAACAGCC-------------------------- ------------------AGTTTCTGCCTTAACTGATTAACCAATCTTAC---------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------CCGCCATTATGACTTGTTCCTGCCCTACCCTA ACTGATCAATCGACC--------TT--ATGACAT-------CCTGG---------ACAAT GGATCTCA------------TGATCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------ATG----CACCTTGTG-------------- ---------------------------AC-CCTCT-CCC-TGCTGACAACAG-ATAA-CC ACC-TTCAACTGTAACTTTCCACTGCCTATCCA-AGTCCTATAA-----------AGCT- GCCCCTCTC-C--TATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACTTGCACCC AAGTG-------A-ATAGACAGCCTTGTTGCTTACACAAAACCTG--TTTA-GGTGGTCT -TCTATATGGACACACGTG-----A--C- >LTR7C_chr3_Sltr_918__chr3_4452260844523078_+_ -GTCAGGCCTCTGAGCCGGAG--------------------------------------- -----------------------------CTAAGCCATTGTAACCCCTGTGACCTGCACG TATACATCCAGACGGCCTGCAGGAGCCAAGAAGT------------------CTGGAGCA GCC-GAGA-AACCACAAAAGAAATG-AAACAGCC-------------------------- ------------------AGTTTCAGCCTTAACTGATTAACCAAACTTAC---------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------CCACCATTATGACTTGTTCCTGCCCTACCCTA ACTGATCAATCGACC--------TT--ATGACATTT-TTCTCCAGG---------ACAAT GGATCTCA------------TGATCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------ATG----CACGTTGTG-------------- ---------------------------AC-CTCCTCCCC-TGCTGACAACAG-ATGA-CC ACC-TTCAACTGTAACTTTCCACTGCCTACCCA-AGTCCTGTAA-----------AGTT- GCCCCTCTC-C--TATCTCCCTTCGCTGACTCTCTTTTTGGACTCAGCCCACTTGCACCC AAGTG-------A-ATAAACAGCCTTGTTGCTCACACTAAGCCTG--TTTA-GGTGGTCT -TCTATATGGACATACGTG-----A--CA >LTR7C_chr19_Sltr_571__chr19_2113478121135256__ TGTTAGGCATCTGAGCCGAAG--------------------------------------- -----------------------------CTCAGCCATTATAACCCCTGTGACCTGCATA TATGTGTCCACATGGCCTGCAGGAGCCAAGAAGT------------------CTGTAGCA GCC-AAAA-AACCACAAAGAAAGTG-AAACAGCC-------------------------- ------------------AGTTCCTGCCTTAACTGATTAACCAACATTAC---------- ---A-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------CAACCATTGTGACTTTTCCTTGCCCCACCTTA ACTGATCAATCGACC--------CT--GTGATTGTC-TTCTTCTGG---------ACAAT GAGTCCCA------------TGATCTCTCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------ATG----CACCTTGTG-------------- ---------------------------AC-CCCCTCCCC-TGCTAACAATAG-ATAA-CT ACT-TTTAACTGTAACTTTCCACTGTCTACCCA-AGCCCTATAG-----------AGCT- GCCCCTCTC-C--TATCTCCCTTTGCTGACTCTCTTTTCGGACTCAGCCCACTTGCACCC AAGTG-------A-ATAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACCTGGATGTGCTTG-----A--C- >LTR7C_chr2_Sltr_648__chr2_110691825110692262_+_ -GTCAGGCCTCTGAGCCAAAG--------------------------------------- -----------------------------CTCAGCCATTGTAACCCCTGTGGCCTGCACA TATATGTCCAGATGGCCTGCAGGAGCCAAGAAGT------------------CTGGAGCA GCC-GAAA-AA------------------------------------------------- ----------------------CCTGCCTTAACTAATTAACCCACCTTAT---------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------CTACCATTATGACTTGTTCCTGCCCTGCCCCA ACTGATCAGTCGACC--------TT--ATGACATTG-TTCTTCTGG---------ACGAT GAGTCTTA------------CGATCTCTCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------ATG----CACCTTGTG-------------- ---------------------------AC-CCTCTCCCC-TGCGAACAATAG-ATAA-CC ACC-TCTAACTGTAACTTTCCACTGCCTACCCC-AGTCCCGTAA-----------AGCT- GCCCCTCTC-C--TATCTCCCTTCTCTGACTCTCTTTTCAGATTCAGCCCACTAGTACCC A-----------------ACAGCCTTCTTGGTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACGCGCTTG-----A--CA >LTR7C_chr6_Sltr_1237__chr6_168677168168677632__ TATTAGGCCTCTGAGCCGAAG--------------------------------------- -----------------------------CTCCGCCATTGTAACCCCTGTGACCTGCACA TATACATCCAGATGGCCTGCAGGAGCCAAGAAGT------------------CTGGAGCA GCT-GAAA-AAACACAAAGA-GGTG-AAACAGCC-------------------------- ------------------AGTTCCTGCCTTAACTAATTAACCCACCTTAC---------- ---A-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------CCACCATTATGACTTGTTCCTGCCCTGCCCCA ACTGGTCAATCGACC--------CT--GTGACATTC-TTCTCCTGG---------ACAAT GAGTCCCA------------TCATCTCTCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------ATG----CACCTTGTG-------------- ---------------------------AC-ACCCTCCCC-TGCTGAC----G-ATAA-CC ACC-TTTAACTGTAACTTTCCACTGCCTACCCC-ACTCCTATAA-----------AGCT- GCCCCTCTC-C--TATCTCCCTTCTCTGACCCTCTTTTTGGACTCAGCCCACTTGCACCC AAGTG-------A-ATAAACAGCCCTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACATGGACACGCTTG-----A--C- >LTR7C_chr6_Sltr_1233__chr6_161407610161408082_+_ -GTCAGGCCTCTGAGTCGAAG--------------------------------------- -----------------------------CTCAGCCATTATAACCCCTGTGACCTGCACA TATACGTCCAGATGGCCTGCAGGAGCCAAGAAGT------------------CTGAAGCA GCC-AAAG-AAAAACAAAGA-AGTG-AAACAGCC-------------------------- ------------------AGCTCCTGCCATAACTGATTGACCAACCTTAT---------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------CCACCATTATGACTTGTTCTGGCCCTGCCCCA ACTGATCAGTTGACC--------TT--GTGACATTC-TTCTTTCGG---------ACAAT GAGTCTTA------------TGATCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------ATG----CACCTTGTA-------------- ---------------------------AT-CCCCTCCTC-TGCTAACAATAG-ATAA-CC TCC-TTTAACTGTAACTTTCCACTGCCTACCCA-AGTCCTATAA-----------AGCT- GCCCCTCTC-C--TATCTCCCTTCGCTGACTCTCTTTTTGGACTCAGCCCACTTGCACCC AAGTG-------A-ATAAACAGCTTTATTGCTCACACAGAGCCTG--TTT--GGTGGTCT CTTCACATGGACAGGCTTG-----A--CA >LTR7C_chrX_Sltr_1524__chrX_1374156913742016__ TGTCAGGCCTCTGAGCCGAAG--------------------------------------- -----------------------------CTCAGCCATTGTAACCCCCGTAACCTGCATA TATACGTCCAGATGGCCTGCAGGAGCC--------------------------------A GCT-AAAA-AACCAC--AGA-AGTG-AAACAGC--------------------------- ---------------------TCCTGCCTTAACTGACTGACCAACCTTAC---------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------CCACCATTATGACTTGTTC-TGCCCTGCCCCA ACTGATCAATCGACC--------TT--GTGACATTC-TTCTTCTGG---------ACAAT GAGTCCCA------------AGATCTCTCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------C---------ATG----CACCTTGGG-------------- ---------------------------AC-CCCCTCCCC-TGCTAACAATAA-ATAA-CC ACC-TTTAACTGTAACTTTCCACTGCCTACTCA-AGCCCTATAA-----------AGCT- GCCCCTCTC-C--TATCTCCCTTCACTGACTCTCTTTTCGGACTCAACCCACTTGCACCC AAGTG-------A-ATAAACAGCCTTGTTCCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACAGACACGCATA-----A--C- >LTR7C_chr17_Sltr_519__chr17_6476475364765196__ TGTCAGGCCTCTAAGCCGGAG--------------------------------------- -----------------------------CAAGGTCCTTGTAACCCCTGTGACCTGCCCG TATACATCCAAATGGCCTGCAGGAGCCACAAAGT------------------CTGGAGCA GCC-AAAA-AACCACAAAAAGAGTA-AAACAGCC-------------------------- ------------------AGCTCCT----------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ -------------------------------------TGCATTGT-----CCCTGCCCCA ACTCATCAATTGACC--------TT--GTGACAATC-TCCTCCTGG---------ACAGT GAGTCTCA------------GGAGCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------T---------GAG----CACCTTGTG-------------- ---------------------------A--CCCCTCCCC-TGCTATCAATAG-ATAA-CC ACC-TTTAACTGTACCTTTCCACTGCCTACCCA-AGTCCTGTAA-----------AGCT- GCCCCTATT-C--TATCCCCCTTCGCTGTCTCTCTTTTTGGACTCAGCCCATCCGCACCC ATGTA-------A-ATAAACAGCCTTGTTGCTCACACAAAGCCTG--TTT--GGTGGTCT CTTCACACGGACATGCTTA-----A--C- >LTR7B_chr19_2ltr_int_fr_720__chr19_97418269742178_+_ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ -----------------------------GATATTCCCCAACCTTG---------TGAAT GTACTTTG------------TAAACTTCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------CCTTGAGA--ATG----TACTTTGTA-------------- ---------------------------ACAACCATCCCT-TGCCTGCAAAAA-ATTG-CT CC----TAAC--------TCCACAGCCTATCCC-AAACCTATAA-----------GA--- -----AGCC-C--CACCACCCTTCGCTGACTCCTTTCTCAGACTCAGCCCACTTGCAGCC AAGTG-------A-ATAAACAGCCTTGTTACTCACACTAAGCCTG--CTT-AGGCAGTCT CTT-ATATGGTCGCACATA-----A--CA >LTR7B_chr1_Sltr_fr_24__chr1_160985674160986052__ ------------------------------------------------------------ --------------------------------------GG-------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------T----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------CCACCCTTGTGAT------------------- -------AATGTACT--------TT--GTGATACTCCT-GTCCTTG---------TGAAT GTACTTTG------------TAACCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------CC---AGA--ATG----TACTTTGTA-------------- ---------------------------ATATCCATCCCC-TGCCTGTAAAAA-ATTG-CT CC----TGAC--------TACACCGCCTATCCC-AAACCTATAA-----------GA--- -----ACCC-C--CACCACCTTTTGCTGACCCCTTTCTCGGACTCAGCCCACTCACACAC AAGTG-------A-ATAAACAGCCATGTTGCTCACACTAAGCCTG--TTC-AGGTGGTCT CTT-ATGTGGACACGCATA-----A--C- >LTR7B_chr1_Sltr_fr_75__chr1_231099234231099615__ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ -------------------------------------TGAT------------------- -------AATGTACT--------TT--GTGAAATTCCTCGTCCTTG---------TGAAC GTACTTTG------------TAACCTCCCA-GC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------CC---AGA--ATG----TACTTTGTA-------------- ---------------------------ACATCCATCCCC-TGCCAGCAAAAA-ACTG-CT CC----TGAC--------TCCACCGCCTATCCC-AAACCCATAA-----------GA--- -----ACCC-T--CACCACCCTTCGCTGACCCCTTTCTCAGACTCAGTGCACTTGCACCC AAGTG-------A-ATAAACAGCCTTGTTGCTCACACTAAGCCTG--CTC-AGGTGGTCT CTT-ATATGTACCTGCGTA-----A--C- >LTR7B_chr1_Sltr_fr_46__chr1_203001946203002373__ TG------------------G--------------------------------------- -----------------------------TCAAGGCATTG-------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------T----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------CTACCCTTGTGAT------------------- -------AATGTACT--------TT--GTGATATTCCCTATCCTTG---------TGAAT GTGCTTTG------------TAACCTCCCC-GC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------CC---AGA--ATG----TACTTTGTA-------------- ---------------------------ACATCCATCCTT-TGCCCACA-AAA-ATTG-CT CC----TAAC--------TCCACGGCCTATCCC-AAACTTATAA-----------GA--- -----ACCC-C--CACCACACTTCGCTGACTCCTTTCTCGGACTCAGCCCACTTGCACCC AAGTG-------A-ATAAACAGCCTTGTTGCTCACACTAAGCCTG--CTC-AGGTGGTCT CTT-ATACAGATGCGTGTA-----A--C- >LTR7B_chr10_Sltr_fr_205__chr10_9134452691344877_+_ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------CCACCCTTGTGAT------------------- -------AATGTGCT--------TT--ATGATATTCCCCATCCTTG---------TGAAT GTACTTCG------------TAACCTCCCC-GC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------CC---AGA--ATG----TACTTTGTA-------------- ---------------------------ACATCCATCCCC-TGCCCACAAAAA-ATTG-CT CC----TGAC--------TCTACCGCCTATCCC-AAACCTATAA-----------GA--- -----AACC-C--CTCCACCCTTCGCTGACTCCTTTCTCAGACTCAGCCCACTTGCGCCC AAGTG-------A-ATAAACGGTCTTGTTGCTCACACTAAGCCTG--CTC-AGGTGGTCT CTT-ATACGGACGCGAGTA-----A--CA >LTR7B_chr14_Sltr_fr_480__chr14_8577795585778477__ ------------------------------------------------------------ -------------------------------------TGG-------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------T----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------CCGCCCTTGTGAT------------------- -------AATGTACT--------TT--GTAACACTCCCCACCCTTG---------TGAAT GTACTTTG------------TGACCTCCCC-GC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------CC---AGA--ATG----TACTTTGTA-------------- ---------------------------ACATCCATCCCC-TGCCGGCAAAAA-ATTG-CT CC----TAAC--------TCCACCGCCTATCCC-AAACCTGTAA-----------GA--- -----ACCC-C--CACCACCCTTCGCTGACTCCTTTCTCAGACTCAGCCCACTTGCACCC AAGTG-------A-ATAAACAGTCTTGTTGCTCGCACTAAGCCTG--CTC-AGGTGGTCT --T-ATACGGATGCGCATA-----A--C- >LTR7B_chr3_Sltr_fr_987__chr3_119125272119125630__ ------------------------------------------------------------ ----------------------------------CCATCG-------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------T----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------CCGCCCTTGTGAT------------------- -------AATGTACT--------TT--GTGATATTCCCCATCCCTG---------TGAAT GTACTTTG------------TAAG------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------ATA----TACTTTGTA-------------- ---------------------------ACGTCCATCCCC-TGCCCTTAAAAA-ATTG-CT CC----TGAC--------TCCACTGCCTATCTG-AAACCTGTAG-----------GA--- -----ACCC-C--CACCACCCTTTGCAGACCCCTTTCTCGGACTCAGCCCACTTGCACCC AAGTG-------A-ATAAACAGCCTTGTTTCTCACACTAAGTCTG--CTC-AGTTCGTCT CTT-ATACGAACGCGCATA-----A--C- >LTR7B_chr3_Sltr_fr_1122__chr3_8453711584537530__ ------------------------------------------------------------ ----------------------------------CCATTG-------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------T----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC AAT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------CCGCCCTTGTGAT------------------- -------AATGTACT--------TT--GTGATATTCCCCATCCTTG---------TGAAT GTACTTTG------------TAACCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------CC---AGA--ATG----TACTTTGTA-------------- ---------------------------ACATCTATTCCC-TGCATGCAAAAC-ATTG-CT CC----TGCC--------TCCACTGCCTATCCC-AAACCTGAAA-----------GA--- -----ACCC-T--CACCTCCCTTCGCTGACTCCTTTTTCAGACTCAGCCCGCTTGCACCC AAGTG-------A-ATAAACAGCCTCGTTGCTCACACTAAGCCTT--TTC-AGGTGGTCC CTT-ATATGAACACATGTA-----A--C- >LTR7B_chr2_Sltr_fr_806__chr2_189382591189382995__ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ -----------------------------CACCCTTGTGAT------------------- -------AATATACT--------TT--GTGATATTC------CTTG---------TGAAT GTACTTTG------------TAACCTCCCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------CCTTGAGA--ATG----TACTTTGTA-------------- ---------------------------ACATCCATCCCC-TACCTGCAAAAA-ATTG-CT CC----TGAC--------TCCACCACCTATCCC-AAACCTATAA-----------GA--- -----ACCC-C--CACCACCCTTTGCTGACTCTTTTCCCAGACTCAGCCCACTTGCACCC AGGTG-------A-ATAAATAGCCTTGTTGCTCACACTAAGCCTG--CTC-AGGTGGTCT CTT-ATATGGACGTGCGTA-----A--C- >LTR7B_chr4_Sltr_fr_1240__chr4_6701470067015134_+_ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ -----------------------------CGCCCTTGTGAT------------------- -------AATACACT--------TT--GTGGTATTCCCCATGCTTG---------TGAAT GTACTTTG------------TAACCCCGCC-AC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------CCTTGTGA--ATG----TACTTTGTA-------------- ---------------------------ACATCCATCCAC-TGC-----------CTG-CT CC----TAAT--------TCCACCGCCTATCCC-AAACCTGTAA-----------GA--- -----ACCC-C--CACCACTCTTTGCTGACTCCTTTCTCGGACTCAGCCCACTTGCATCC AAGTG-------A-ATAGACAGCCTTGTTGCTCACACTAAGCCTG--CTC-AGGTGGTCT CTC-ATACGGATGTGCTTA-----A--CA >LTR7B_chr12_Sltr_fr_332__chr12_132956755132957399__ ------------------------------------------------------------ ----------------------------------CCATCG-------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------T----------------------- ---G-------------------------------------------------------- ----------------------------------------------------------AC ATT--------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------CCACCCTTGTGAT------------------- -------AATGTACT--------TT--GTAATATTCCCGGTCCTTG---------TGAAT GTACTTTG------------TAACCTCCCC------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------------------TGCCCGCAAAAA-ATTG-CT GC----TGA-----------------------------------------------A--- -----ACCC-C--CACCACCCTCCGCTGACTCCTTTCTCAGACTCAGCCCACTTGCACCC AAGTG-------A-ATAAACAGGCGTGTTGCTCACACTTAGCCTG--CTC-AGGTGGTCT CCT-ATACGGACGCACGTA-----A--C- >LTR7B_chr19_Sltr_fr_678__chr19_29013832901994__ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ---------------------------------------------------------AAG GTACTTTG------------TAATGTCGCC-GC--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------CCTTGAGA--ATG----TACTTTGTA-------------- ---------------------------ACACCCACCAAC-TGTCCTCAAAAA-ACTG-CT CC----TAAC--------TCCGATGCCTGTCCC-AAACCTATAA-----------GA--- -----ACCC-C--CATCACCCTTTGCTGAGTCCTTTCTCAGACTCAGCCCACTTGCACCC AAGTG-------A-GTAAACAGCCTTGTGGCTCACACTAAGCCTG--CTC-AGGTGACCT CTT-ATACGGACACGCGTA-----A--C-