Information for 9-GTGAGTGCCA (Motif 29)

A C T G A C G T A T C G C G T A T A C G A C G T A C T G T G A C A T G C T G C A
Reverse Opposite:
A C G T A T C G A C T G A G T C C G T A A T G C G C A T A T G C G T C A A G T C
p-value:1e-17
log p-value:-4.030e+01
Information Content per bp:1.798
Number of Target Sequences with motif33.0
Percentage of Target Sequences with motif1.42%
Number of Background Sequences with motif7.9
Percentage of Background Sequences with motif0.22%
Average Position of motif in Targets96.2 +/- 56.9bp
Average Position of motif in Background95.4 +/- 42.8bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PKNOX1/MA0782.2/Jaspar

Match Rank:1
Score:0.79
Offset:-1
Orientation:forward strand
Alignment:-GTGAGTGCCA----
TTTGAGTGACAGCTA
 A C G T A C T G A C G T A T C G C G T A T A C G A C G T A C T G T G A C A T G C T G C A A C G T A C G T A C G T A C G T
C G A T G C A T C G A T T C A G C T G A A C T G C G A T A T C G C T G A G A T C C G T A A C T G T A G C A G C T C T G A

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:2
Score:0.78
Offset:0
Orientation:reverse strand
Alignment:GTGAGTGCCA--
BTGABTGACAGS
 A C T G A C G T A T C G C G T A T A C G A C G T A C T G T G A C A T G C T G C A A C G T A C G T
A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C

PBX3/MA1114.1/Jaspar

Match Rank:3
Score:0.78
Offset:-2
Orientation:forward strand
Alignment:--GTGAGTGCCA-----
GGGTGAGTGACAGGCGG
 A C G T A C G T A C T G A C G T A T C G C G T A T A C G A C G T A C T G T G A C A T G C T G C A A C G T A C G T A C G T A C G T A C G T
T A C G A C T G A C T G C G A T T C A G C G T A A C T G C A G T T A C G C T G A T A G C C T G A A C T G T A C G A T G C T C A G A T C G

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.77
Offset:0
Orientation:reverse strand
Alignment:GTGAGTGCCA--
NTGATTGACAGN
 A C T G A C G T A T C G C G T A T A C G A C G T A C T G T G A C A T G C T G C A A C G T A C G T
A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G

PB0130.1_Gm397_2/Jaspar

Match Rank:5
Score:0.75
Offset:-4
Orientation:reverse strand
Alignment:----GTGAGTGCCA--
NNGCGTGTGTGCNGCN
 A C G T A C G T A C G T A C G T A C T G A C G T A T C G C G T A T A C G A C G T A C T G T G A C A T G C T G C A A C G T A C G T
C A G T A C G T C T A G T G A C C A T G A C G T T A C G A G C T C A T G A G C T A C T G A G T C A G T C C A T G A G T C G A C T

MSANTD3/MA1523.1/Jaspar

Match Rank:6
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:GTGAGTGCCA
GTGAGTGNAC
 A C T G A C G T A T C G C G T A T A C G A C G T A C T G T G A C A T G C T G C A
C A T G C A G T C T A G C G T A C T A G G C A T C T A G A C G T T G C A T A G C

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:7
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:GTGAGTGCCA---
-TGAGTGACAGSC
 A C T G A C G T A T C G C G T A T A C G A C G T A C T G T G A C A T G C T G C A A C G T A C G T A C G T
A C G T C G A T A T C G T C G A A C T G C G A T A T C G C T G A A G T C C G T A A T C G T A C G G A T C

ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:8
Score:0.74
Offset:-1
Orientation:reverse strand
Alignment:-GTGAGTGCCA-
RGTTAGTGCCCY
 A C G T A C T G A C G T A T C G C G T A T A C G A C G T A C T G T G A C A T G C T G C A A C G T
C T G A C T A G A C G T G A C T G T C A A C T G A G C T A C T G A T G C G T A C G T A C A G C T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:9
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:GTGAGTGCCA
TTGCGTGCVA
 A C T G A C G T A T C G C G T A T A C G A C G T A C T G T G A C A T G C T G C A
A C G T C A G T A C T G A G T C T C A G C G A T C A T G G T A C T A G C C G T A

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:10
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--GTGAGTGCCA-
AGGTGNCAGACAG
 A C G T A C G T A C T G A C G T A T C G C G T A T A C G A C G T A C T G T G A C A T G C T G C A A C G T
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G