Information for 1-GCCATAATCA (Motif 4)

C A T G T A G C G T A C G C T A A C G T G T C A G T C A C A G T G A T C G C T A
Reverse Opposite:
C G A T C T A G G T C A C A G T C A G T T G C A C G A T C A T G A T C G G T A C
p-value:1e-27
log p-value:-6.276e+01
Information Content per bp:1.538
Number of Target Sequences with motif23.0
Percentage of Target Sequences with motif0.99%
Number of Background Sequences with motif1.1
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets103.5 +/- 41.7bp
Average Position of motif in Background182.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

DLX1(Homeobox)/BasalGanglia-Dlx1-ChIP-seq(GSE124936)/Homer

Match Rank:1
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GCCATAATCA
NSNNTAATTA
 C A T G T A G C G T A C G C T A A C G T G T C A G T C A C A G T G A T C G C T A
A T C G A T G C A G T C T A G C G A C T T C G A G C T A G C A T A G C T C T G A

PH0022.1_Dlx3/Jaspar

Match Rank:2
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GCCATAATCA-----
TCGCGATAATTACCGAC
 A C G T A C G T C A T G T A G C G T A C G C T A A C G T G T C A G T C A C A G T G A T C G C T A A C G T A C G T A C G T A C G T A C G T
A C G T G T A C T C A G T G A C C A G T C T G A A G C T C G T A C G T A A C G T C A G T C T G A A G T C G T A C T A C G G C T A G T A C

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GCCATAATCA
GGCCATTAAC-
 A C G T C A T G T A G C G T A C G C T A A C G T G T C A G T C A C A G T G A T C G C T A
C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C A C G T

CDX1/MA0878.2/Jaspar

Match Rank:4
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GCCATAATCA
GGCCATAAAAC
 A C G T C A T G T A G C G T A C G C T A A C G T G T C A G T C A C A G T G A T C G C T A
C A T G C T A G A G T C T G A C C G T A A C G T C T G A C G T A C T G A G T C A A G T C

HOXB8/MA1502.1/Jaspar

Match Rank:5
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GCCATAATCA
GCAATTAC--
 C A T G T A G C G T A C G C T A A C G T G T C A G T C A C A G T G A T C G C T A
A C T G A G T C T G C A C G T A A C G T C A G T C G T A T G A C A C G T A C G T

PH0017.1_Cux1_2/Jaspar

Match Rank:6
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--GCCATAATCA---
TAGTGATCATCATTA
 A C G T A C G T C A T G T A G C G T A C G C T A A C G T G T C A G T C A C A G T G A T C G C T A A C G T A C G T A C G T
G A C T G C T A C A T G A G C T C A T G G C T A C G A T G A T C C G T A C A G T G A T C T C G A A G C T A C G T G C T A

PH0023.1_Dlx4/Jaspar

Match Rank:7
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--GCCATAATCA-----
GCGCTATAATTACCGAC
 A C G T A C G T C A T G T A G C G T A C G C T A A C G T G T C A G T C A C A G T G A T C G C T A A C G T A C G T A C G T A C G T A C G T
A C G T G T A C T C A G T G A C C A G T C T G A G A C T C G T A C G T A C G A T A C G T C T G A G T A C G T A C T A C G G C T A G T A C

PB0176.1_Sox5_2/Jaspar

Match Rank:8
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GCCATAATCA----
TATCATAATTAAGGA
 A C G T C A T G T A G C G T A C G C T A A C G T G T C A G T C A C A G T G A T C G C T A A C G T A C G T A C G T A C G T
C G A T G C T A C G A T A G T C C T G A C A G T T G C A G C T A G C A T G A C T C G T A T G C A T A C G C A T G C G T A

HOXD8/MA0910.2/Jaspar

Match Rank:9
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GCCATAATCA
GCAATTAC--
 C A T G T A G C G T A C G C T A A C G T G T C A G T C A C A G T G A T C G C T A
T C A G A G T C T G C A C G T A A C G T C A G T C G T A T G A C A C G T A C G T

PB0125.1_Gata3_2/Jaspar

Match Rank:10
Score:0.59
Offset:-6
Orientation:reverse strand
Alignment:------GCCATAATCA------
NNNNNCGATANNATCTNNNNAN
 A C G T A C G T A C G T A C G T A C G T A C G T C A T G T A G C G T A C G C T A A C G T G T C A G T C A C A G T G A T C G C T A A C G T A C G T A C G T A C G T A C G T A C G T
C A G T C G T A C G T A T A C G A G C T G A T C C T A G T C G A A G C T C T G A T G C A C G T A C T G A C A G T G A T C C G A T T C G A A G T C G C T A C G T A T G C A C T G A