Information for 3-CTTGGCTA (Motif 46)

A T G C A G C T G C A T A T C G C T A G T A G C G C A T G T C A
Reverse Opposite:
C A G T C G T A A T C G G A T C T A G C C G T A T C G A T A C G
p-value:1e-13
log p-value:-3.067e+01
Information Content per bp:1.598
Number of Target Sequences with motif380.0
Percentage of Target Sequences with motif16.37%
Number of Background Sequences with motif409.4
Percentage of Background Sequences with motif11.20%
Average Position of motif in Targets97.6 +/- 56.1bp
Average Position of motif in Background99.0 +/- 55.6bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIC/MA0161.2/Jaspar

Match Rank:1
Score:0.80
Offset:-2
Orientation:forward strand
Alignment:--CTTGGCTA-
TACTTGGCAGA
 A C G T A C G T A T G C A G C T G C A T A T C G C T A G T A G C G C A T G T C A A C G T
G A C T G C T A T G A C A C G T G C A T T C A G C A T G G A T C C G T A A T C G C G T A

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.77
Offset:0
Orientation:reverse strand
Alignment:CTTGGCTA-
NTTGGCANN
 A T G C A G C T G C A T A T C G C T A G T A G C G C A T G T C A A C G T
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

NFIA/MA0670.1/Jaspar

Match Rank:3
Score:0.73
Offset:-1
Orientation:reverse strand
Alignment:-CTTGGCTA-
NNTTGGCANN
 A C G T A T G C A G C T G C A T A T C G C T A G T A G C G C A T G T C A A C G T
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:CTTGGCTA
CTTGGCAA
 A T G C A G C T G C A T A T C G C T A G T A G C G C A T G T C A
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A

POL004.1_CCAAT-box/Jaspar

Match Rank:5
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--CTTGGCTA--
TGATTGGCTANN
 A C G T A C G T A T G C A G C T G C A T A T C G C T A G T A G C G C A T G T C A A C G T A C G T
A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:6
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---CTTGGCTA
NNACTTGCCTT
 A C G T A C G T A C G T A T G C A G C T G C A T A T C G C T A G T A G C G C A T G T C A
T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:7
Score:0.65
Offset:1
Orientation:forward strand
Alignment:CTTGGCTA-
-TWGTCTGV
 A T G C A G C T G C A T A T C G C T A G T A G C G C A T G T C A A C G T
A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G

PB0158.1_Rfx3_2/Jaspar

Match Rank:8
Score:0.65
Offset:-7
Orientation:forward strand
Alignment:-------CTTGGCTA--------
ACTGACCCTTGGTTACCACAAAG
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G C T G C A T A T C G C T A G T A G C G C A T G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
T G C A A G T C A C G T A T C G G C T A A T G C T A C G A T G C G C A T C G A T T C A G A C T G C G A T C A G T C G T A G A T C T G A C T C G A T G A C T C G A T C G A C G T A A T C G

NFY(CCAAT)/Promoter/Homer

Match Rank:9
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---CTTGGCTA
CCGATTGGCT-
 A C G T A C G T A C G T A T G C A G C T G C A T A T C G C T A G T A G C G C A T G T C A
A T G C A G T C A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G C T A C G T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:10
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----CTTGGCTA
TGACCTTGAN--
 A C G T A C G T A C G T A C G T A T G C A G C T G C A T A T C G C T A G T A G C G C A T G T C A
G C A T C T A G C T G A T G A C G A T C A G C T C A G T A T C G C T G A T G C A A C G T A C G T