Information for 18-TCTCGGGTTTCATCG (Motif 55)

A C G T A T G C C G A T A G T C A C T G A C T G A C T G A C G T A C G T A C G T A G T C G T C A A C G T A G T C A C T G
Reverse Opposite:
A G T C A C T G C G T A A C G T A C T G C G T A C G T A G T C A A G T C A G T C A G T C A C T G C G T A A T C G C G T A
p-value:1e-12
log p-value:-2.808e+01
Information Content per bp:1.905
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif0.69%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets116.2 +/- 47.9bp
Average Position of motif in Background156.7 +/- 9.8bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SIX2/MA1119.1/Jaspar

Match Rank:1
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-TCTCGGGTTTCATCG
GTATCAGGTTTCAGNN
 A C G T A C G T A T G C C G A T A G T C A C T G A C T G A C T G A C G T A C G T A C G T A G T C G T C A A C G T A G T C A C T G
C T A G C A G T T G C A G C A T G A T C C G T A C A T G C T A G G A C T C A G T C G A T G T A C G C T A A C T G C G A T C G A T

Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer

Match Rank:2
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---TCTCGGGTTTCATCG
VGGTVTCAGRTTWCA---
 A C G T A C G T A C G T A C G T A T G C C G A T A G T C A C T G A C T G A C T G A C G T A C G T A C G T A G T C G T C A A C G T A G T C A C T G
T A G C T C A G T C A G C A G T T C A G A C G T A G T C T C G A C T A G C T A G A C G T A C G T C G A T G T A C G T C A A C G T A C G T A C G T

SIX1/MA1118.1/Jaspar

Match Rank:3
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:TCTCGGGTTTCATCG
TATCAGGTTAC----
 A C G T A T G C C G A T A G T C A C T G A C T G A C T G A C G T A C G T A C G T A G T C G T C A A C G T A G T C A C T G
C A G T T G C A G C A T G A T C C G T A C A T G C T A G G C A T C G A T G C T A G T A C A C G T A C G T A C G T A C G T

Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer

Match Rank:4
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-TCTCGGGTTTCATCG
GKMTCADRTTWC----
 A C G T A C G T A T G C C G A T A G T C A C T G A C T G A C T G A C G T A C G T A C G T A G T C G T C A A C G T A G T C A C T G
C T A G C A G T T G C A A C G T G A T C T C G A C T A G T C A G A C G T C A G T G C A T G A T C A C G T A C G T A C G T A C G T

IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:TCTCGGGTTTCATCG
----TGGTTTCAGT-
 A C G T A T G C C G A T A G T C A C T G A C T G A C T G A C G T A C G T A C G T A G T C G T C A A C G T A G T C A C T G
A C G T A C G T A C G T A C G T G A C T C T A G T A C G C G A T G C A T A C G T T A G C T C G A A T C G C G A T A C G T

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:6
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-TCTCGGGTTTCATCG
GKVTCADRTTWC----
 A C G T A C G T A T G C C G A T A G T C A C T G A C T G A C T G A C G T A C G T A C G T A G T C G T C A A C G T A G T C A C T G
C T A G C A T G T G C A A C G T A G T C C G T A C A T G T C A G A C G T A C G T G C T A A G T C A C G T A C G T A C G T A C G T

PB0059.1_Six6_1/Jaspar

Match Rank:7
Score:0.51
Offset:0
Orientation:forward strand
Alignment:TCTCGGGTTTCATCG--
AATAGGGTATCATATAT
 A C G T A T G C C G A T A G T C A C T G A C T G A C T G A C G T A C G T A C G T A G T C G T C A A C G T A G T C A C T G A C G T A C G T
C T G A G C T A C G A T T C G A C T A G A C T G T C A G A C G T C T G A A C G T G A T C C T G A G A C T C G T A C G A T G C T A G A C T

PKNOX2/MA0783.1/Jaspar

Match Rank:8
Score:0.51
Offset:0
Orientation:forward strand
Alignment:TCTCGGGTTTCATCG
TGACAGGTGTCA---
 A C G T A T G C C G A T A G T C A C T G A C T G A C T G A C G T A C G T A C G T A G T C G T C A A C G T A G T C A C T G
C G A T T A C G C T G A A G T C C G T A C A T G T A C G A G C T T C A G G A C T T G A C C T G A A C G T A C G T A C G T

RXRA::VDR/MA0074.1/Jaspar

Match Rank:9
Score:0.51
Offset:-3
Orientation:forward strand
Alignment:---TCTCGGGTTTCATCG
GGGTCAACGAGTTCA---
 A C G T A C G T A C G T A C G T A T G C C G A T A G T C A C T G A C T G A C T G A C G T A C G T A C G T A G T C G T C A A C G T A G T C A C T G
C T A G A C T G A C T G A C G T A G T C C T G A G C A T A G T C C T A G C T A G A C T G A C G T C G A T A G T C T C G A A C G T A C G T A C G T

PH0164.1_Six4/Jaspar

Match Rank:10
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:TCTCGGGTTTCATCG--
TNNNNGGTGTCATNTNT
 A C G T A T G C C G A T A G T C A C T G A C T G A C T G A C G T A C G T A C G T A G T C G T C A A C G T A G T C A C T G A C G T A C G T
A G C T T C A G T C G A C A G T C T G A T C A G A C T G A C G T C T A G A C G T G T A C C T G A C G A T C A G T G A C T G T C A C A G T