Information for 4-TCACGA (Motif 79)

A C G T A G T C G T C A A G T C A C T G C G T A
Reverse Opposite:
A C G T A G T C C T A G A C G T A C T G C G T A
p-value:1e-6
log p-value:-1.496e+01
Information Content per bp:1.891
Number of Target Sequences with motif235.0
Percentage of Target Sequences with motif10.12%
Number of Background Sequences with motif266.8
Percentage of Background Sequences with motif7.29%
Average Position of motif in Targets103.2 +/- 57.3bp
Average Position of motif in Background104.5 +/- 56.4bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Npas4(bHLH)/Neuron-Npas4-ChIP-Seq(GSE127793)/Homer

Match Rank:1
Score:0.87
Offset:-3
Orientation:forward strand
Alignment:---TCACGA---
NHRTCACGACDN
 A C G T A C G T A C G T A C G T A G T C G T C A A G T C A C T G C G T A A C G T A C G T A C G T
T C A G G C T A T C A G C A G T T G A C G T C A A G T C A T C G T G C A G T A C C A G T G A T C

HOXA9/MA0594.2/Jaspar

Match Rank:2
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---TCACGA-
NNTTTACGAC
 A C G T A C G T A C G T A C G T A G T C G T C A A G T C A C T G C G T A A C G T
A T G C C T A G C G A T C G A T C G A T C T G A A G T C C A T G C T G A A G T C

RXRG(var.2)/MA1556.1/Jaspar

Match Rank:3
Score:0.69
Offset:-4
Orientation:forward strand
Alignment:----TCACGA----
GAGGTCATGACCTC
 A C G T A C G T A C G T A C G T A C G T A G T C G T C A A G T C A C T G C G T A A C G T A C G T A C G T A C G T
T C A G T C G A A T C G A C T G C A G T A G T C G T C A A G C T T C A G G T C A G T A C T A G C A G C T A G T C

Pax2/MA0067.1/Jaspar

Match Rank:4
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--TCACGA
AGTCACGC
 A C G T A C G T A C G T A G T C G T C A A G T C A C T G C G T A
G C T A C T A G G C A T A G T C C T G A G A T C C A T G A T C G

RXRB(var.2)/MA1555.1/Jaspar

Match Rank:5
Score:0.69
Offset:-4
Orientation:reverse strand
Alignment:----TCACGA----
GAGGTCATGACCTC
 A C G T A C G T A C G T A C G T A C G T A G T C G T C A A G T C A C T G C G T A A C G T A C G T A C G T A C G T
T C A G C T G A C A T G C A T G A C G T A G T C C T G A A G C T T C A G T G C A T G A C G T A C A G C T A G T C

TFE3/MA0831.2/Jaspar

Match Rank:6
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-TCACGA-
GTCACGTG
 A C G T A C G T A G T C G T C A A G T C A C T G C G T A A C G T
T C A G A C G T A G T C C G T A A G T C T C A G G C A T A C T G

RARB(var.3)/MA1552.1/Jaspar

Match Rank:7
Score:0.67
Offset:-4
Orientation:reverse strand
Alignment:----TCACGA----
AAGGTCATGACCTT
 A C G T A C G T A C G T A C G T A C G T A G T C G T C A A G T C A C T G C G T A A C G T A C G T A C G T A C G T
C T G A T C G A C T A G C A T G A C G T A G T C C T G A G A C T T C A G T C G A G T A C T G A C A G C T G A C T

Hoxa11/MA0911.1/Jaspar

Match Rank:8
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----TCACGA--
ANTTTTACGACC
 A C G T A C G T A C G T A C G T A C G T A G T C G T C A A G T C A C T G C G T A A C G T A C G T
G C T A C G T A C G A T C G A T G C A T G C A T G C T A G A T C C T A G T C G A A G T C G A T C

Arntl/MA0603.1/Jaspar

Match Rank:9
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--TCACGA--
GGTCACGTGC
 A C G T A C G T A C G T A G T C G T C A A G T C A C T G C G T A A C G T A C G T
C A T G T C A G C A G T G T A C G C T A A G T C C T A G G A C T C A T G G A T C

RARG(var.3)/MA1553.1/Jaspar

Match Rank:10
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----TCACGA----
AAGGTCATGACCTT
 A C G T A C G T A C G T A C G T A C G T A G T C G T C A A G T C A C T G C G T A A C G T A C G T A C G T A C G T
C T G A T C G A C A T G C A T G C G A T A G T C C T G A G A C T T C A G G C T A G T A C G T A C A G C T G A C T