Information for 6-CCCMTTTA (Motif 13)

G T A C A T G C A G T C T G C A A C G T A C G T A C G T C G T A
Reverse Opposite:
A C G T C G T A C G T A C G T A A C G T A C T G A T C G A C T G
p-value:1e-65
log p-value:-1.512e+02
Information Content per bp:1.916
Number of Target Sequences with motif114.0
Percentage of Target Sequences with motif4.93%
Number of Background Sequences with motif2.1
Percentage of Background Sequences with motif0.61%
Average Position of motif in Targets103.0 +/- 51.2bp
Average Position of motif in Background98.2 +/- 65.3bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BARHL2/MA0635.1/Jaspar

Match Rank:1
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:CCCMTTTA--
ANCGTTTANN
 G T A C A T G C A G T C T G C A A C G T A C G T A C G T C G T A A C G T A C G T
C T G A A G T C G A T C C T A G G C A T A C G T C G A T C G T A C T A G A T G C

BARHL1/MA0877.2/Jaspar

Match Rank:2
Score:0.75
Offset:1
Orientation:reverse strand
Alignment:CCCMTTTA-
-NCGTTTAN
 G T A C A T G C A G T C T G C A A C G T A C G T A C G T C G T A A C G T
A C G T G T A C G A T C C T A G G C A T A C G T G C A T C G T A A T C G

TATA-Box(TBP)/Promoter/Homer

Match Rank:3
Score:0.69
Offset:1
Orientation:forward strand
Alignment:CCCMTTTA-----
-CCTTTTATAGNC
 G T A C A T G C A G T C T G C A A C G T A C G T A C G T C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C

PB0184.1_Tbp_2/Jaspar

Match Rank:4
Score:0.66
Offset:0
Orientation:forward strand
Alignment:CCCMTTTA-------
CCGATTTAAGCGACC
 G T A C A T G C A G T C T G C A A C G T A C G T A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
T G A C A T G C A T C G C G T A G A C T C G A T C G A T G T C A G C T A A T C G T A G C A C T G G C T A A C G T G T A C

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:5
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:CCCMTTTA-
-BCMATTAG
 G T A C A T G C A G T C T G C A A C G T A C G T A C G T C G T A A C G T
A C G T A C T G A G T C G T C A G T C A A C G T A G C T C G T A T C A G

LHX2/MA0700.2/Jaspar

Match Rank:6
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CCCMTTTA--
AACCAATTAAT
 A C G T G T A C A T G C A G T C T G C A A C G T A C G T A C G T C G T A A C G T A C G T
C G T A C G T A A T G C G A T C G C T A G C T A C G A T C G A T G C T A C G T A G C A T

Nkx3-1/MA0124.2/Jaspar

Match Rank:7
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CCCMTTTA-
ACCACTTAA
 G T A C A T G C A G T C T G C A A C G T A C G T A C G T C G T A A C G T
T C G A T A G C A G T C G C T A G T A C A G C T A G C T G C T A C T G A

BSX/MA0876.1/Jaspar

Match Rank:8
Score:0.65
Offset:1
Orientation:forward strand
Alignment:CCCMTTTA-
-CCAATTAA
 G T A C A T G C A G T C T G C A A C G T A C G T A C G T C G T A A C G T
A C G T T A G C G A T C T G C A T C G A A C G T C G A T C G T A T C G A

MSX2/MA0708.1/Jaspar

Match Rank:9
Score:0.64
Offset:1
Orientation:forward strand
Alignment:CCCMTTTA-
-CCAATTAA
 G T A C A T G C A G T C T G C A A C G T A C G T A C G T C G T A A C G T
A C G T T A G C G A T C G T C A G T C A A C G T A G C T G T C A T C G A

PB0128.1_Gcm1_2/Jaspar

Match Rank:10
Score:0.64
Offset:-5
Orientation:reverse strand
Alignment:-----CCCMTTTA----
NTCNTCCCCTATNNGNN
 A C G T A C G T A C G T A C G T A C G T G T A C A T G C A G T C T G C A A C G T A C G T A C G T C G T A A C G T A C G T A C G T A C G T
T G A C C A G T A G T C T A G C A G C T A G T C T A G C G T A C G T A C A G C T C T G A A G C T C A T G A T G C T A C G G T A C G C T A