Information for 4-CAATTATTTTAT (Motif 15)

G T A C G C T A G C T A G C A T C G A T G C T A G C A T C G A T G C A T G C A T G C T A C G A T
Reverse Opposite:
G C T A C G A T C G T A C G T A G C T A C G T A C G A T G C T A C G T A C G A T C G A T C A T G
p-value:1e-60
log p-value:-1.387e+02
Information Content per bp:1.543
Number of Target Sequences with motif83.0
Percentage of Target Sequences with motif3.59%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.56%
Average Position of motif in Targets110.7 +/- 55.9bp
Average Position of motif in Background55.8 +/- 54.2bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0010.1_Homeobox_class/Jaspar

Match Rank:1
Score:0.76
Offset:1
Orientation:reverse strand
Alignment:CAATTATTTTAT
-AATTATT----
 G T A C G C T A G C T A G C A T C G A T G C T A G C A T C G A T G C A T G C A T G C T A C G A T
A C G T G C T A G C T A G A C T G A C T C G T A G C A T C G A T A C G T A C G T A C G T A C G T

PH0075.1_Hoxd10/Jaspar

Match Rank:2
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:CAATTATTTTAT------
-NTNAATTTTATTGNATT
 G T A C G C T A G C T A G C A T C G A T G C T A G C A T C G A T G C A T G C A T G C T A C G A T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C G T A G C A T G C T A G C T A C T G A A G C T C G A T C G A T C G A T C T G A G C A T C A G T C T A G A G T C T G C A G A C T A C G T

PH0056.1_Hoxa9/Jaspar

Match Rank:3
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:CAATTATTTTAT------
-ANTAATTTTATGGCCGN
 G T A C G C T A G C T A G C A T C G A T G C T A G C A T C G A T G C A T G C A T G C T A C G A T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T G C T A G A C T G C A T G C T A C G T A G C A T C G A T C G A T C G A T C G T A G A C T C A T G C T A G T A G C G A T C A C T G G A C T

HOXB13/MA0901.2/Jaspar

Match Rank:4
Score:0.69
Offset:3
Orientation:reverse strand
Alignment:CAATTATTTTAT-----
---NNATTTTATTGGNN
 G T A C G C T A G C T A G C A T C G A T G C T A G C A T C G A T G C A T G C A T G C T A C G A T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G T A C G T A C G T A C G A T C G A T C G A T G C A T T G C A G C A T C G A T C T A G C A T G G C A T G C A T

PH0078.1_Hoxd13/Jaspar

Match Rank:5
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:CAATTATTTTAT------
--NNANTTTTATTGGNNN
 G T A C G C T A G C T A G C A T C G A T G C T A G C A T C G A T G C A T G C A T G C T A C G A T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C G T A C A T G C T G A C T G A C A G T C G A T C G A T G C A T C T G A G A C T C G A T C T A G T C A G C G A T G C T A C A T G

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:6
Score:0.67
Offset:5
Orientation:reverse strand
Alignment:CAATTATTTTAT---
-----NTTTTATGAC
 G T A C G C T A G C T A G C A T C G A T G C T A G C A T C G A T G C A T G C A T G C T A C G A T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C

PB0067.1_Sox18_1/Jaspar

Match Rank:7
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--CAATTATTTTAT--
TTCAATTGTTCTAAAA
 A C G T A C G T G T A C G C T A G C T A G C A T C G A T G C T A G C A T C G A T G C A T G C A T G C T A C G A T A C G T A C G T
A G C T G C A T A G T C G T C A C G T A C G A T C G A T T C A G C G A T G C A T A G T C G C A T G T C A C G T A G T C A G C T A

BARX2/MA1471.1/Jaspar

Match Rank:8
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-CAATTATTTTAT
NTAATGGTTTTN-
 A C G T G T A C G C T A G C T A G C A T C G A T G C T A G C A T C G A T G C A T G C A T G C T A C G A T
A T C G G C A T C T G A G T C A A G C T A C T G C T A G A C G T G C A T C G A T G C A T G A C T A C G T

Lhx3/MA0135.1/Jaspar

Match Rank:9
Score:0.66
Offset:0
Orientation:forward strand
Alignment:CAATTATTTTAT-
AAATTAATTAATC
 G T A C G C T A G C T A G C A T C G A T G C T A G C A T C G A T G C A T G C A T G C T A C G A T A C G T
C G T A T C G A C G T A A C G T A C G T C G T A C G T A G A C T A G C T G C T A C G T A G A C T A G T C

Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:10
Score:0.66
Offset:6
Orientation:reverse strand
Alignment:CAATTATTTTAT----
------TTTTATTRGN
 G T A C G C T A G C T A G C A T C G A T G C T A G C A T C G A T G C A T G C A T G C T A C G A T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G A T A C G T A C G T G C A T C G T A G A C T C A G T C T A G A T C G G A T C