Information for 5-ATSCATATTCTT (Motif 17)

C T G A A C G T A T G C A G T C C G T A A C G T C G T A A C G T A C G T A G T C A G C T A C G T
Reverse Opposite:
C G T A C T G A A C T G G T C A C G T A A C G T G T C A A C G T C T A G T A C G C G T A A G C T
p-value:1e-59
log p-value:-1.361e+02
Information Content per bp:1.902
Number of Target Sequences with motif82.0
Percentage of Target Sequences with motif3.55%
Number of Background Sequences with motif0.7
Percentage of Background Sequences with motif0.21%
Average Position of motif in Targets90.7 +/- 52.3bp
Average Position of motif in Background44.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:1
Score:0.76
Offset:0
Orientation:forward strand
Alignment:ATSCATATTCTT
ATGMATATDC--
 C T G A A C G T A T G C A G T C C G T A A C G T C G T A A C G T A C G T A G T C A G C T A C G T
G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C A C G T A C G T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.76
Offset:0
Orientation:forward strand
Alignment:ATSCATATTCTT
ATGAATATTC--
 C T G A A C G T A T G C A G T C C G T A A C G T C G T A A C G T A C G T A G T C A G C T A C G T
G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C A C G T A C G T

OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:3
Score:0.75
Offset:-3
Orientation:reverse strand
Alignment:---ATSCATATTCTT
CTCATGAATATTCAT
 A C G T A C G T A C G T C T G A A C G T A T G C A G T C C G T A A C G T C G T A A C G T A C G T A G T C A G C T A C G T
T A G C G A C T G A T C C G T A A C G T T C A G G T C A C G T A A C G T C G T A C G A T A C G T A G T C C G T A C G A T

OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:4
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-ATSCATATTCTT--
YATGCATATRCATRT
 A C G T C T G A A C G T A T G C A G T C C G T A A C G T C G T A A C G T A C G T A G T C A G C T A C G T A C G T A C G T
G A T C C G T A G A C T C T A G G A T C C T G A G A C T C T G A G A C T C T A G G A T C C T G A G A C T C T G A G A C T

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:5
Score:0.68
Offset:1
Orientation:forward strand
Alignment:ATSCATATTCTT
-AAGATATCCTT
 C T G A A C G T A T G C A G T C C G T A A C G T C G T A A C G T A C G T A G T C A G C T A C G T
A C G T G C T A G C T A T C A G C G T A A C G T C T G A C G A T A T G C G A T C G C A T A G C T

PH0148.1_Pou3f3/Jaspar

Match Rank:6
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----ATSCATATTCTT
AAAATATGCATAATAAA
 A C G T A C G T A C G T A C G T A C G T C T G A A C G T A T G C A G T C C G T A A C G T C G T A A C G T A C G T A G T C A G C T A C G T
G C T A G C T A C T A G C G T A G A C T G C T A G A C T C A T G G T A C C T G A C G A T C G T A G C T A C A G T C T G A C G T A C G T A

POU2F2/MA0507.1/Jaspar

Match Rank:7
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--ATSCATATTCTT
ATATGCAAATNNN-
 A C G T A C G T C T G A A C G T A T G C A G T C C G T A A C G T C G T A A C G T A C G T A G T C A G C T A C G T
C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A A C G T

BHLHE23/MA0817.1/Jaspar

Match Rank:8
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:ATSCATATTCTT
NAACATATGTTT
 C T G A A C G T A T G C A G T C C G T A A C G T C G T A A C G T A C G T A G T C A G C T A C G T
G C T A C T G A T G C A T G A C C T G A A C G T T C G A G A C T A C T G A C G T A G C T G C A T

POU2F3/MA0627.2/Jaspar

Match Rank:9
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---ATSCATATTCTT
AATATGCAAATAA--
 A C G T A C G T A C G T C T G A A C G T A T G C A G T C C G T A A C G T C G T A A C G T A C G T A G T C A G C T A C G T
G C T A C G T A G C A T C G T A C A G T C A T G A G T C C G T A C G T A C G T A C G A T C G T A G C T A A C G T A C G T

POU5F1/MA1115.1/Jaspar

Match Rank:10
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--ATSCATATTCTT
ATATGCAAATT---
 A C G T A C G T C T G A A C G T A T G C A G T C C G T A A C G T C G T A A C G T A C G T A G T C A G C T A C G T
C G T A G C A T T C G A G A C T C T A G A G T C G C T A C T G A G C T A G C A T C A G T A C G T A C G T A C G T