Information for 7-SCCTGATG (Motif 20)

A T G C G A T C A T G C A C G T T C A G C G T A C G A T C A T G
Reverse Opposite:
G T A C C G T A A C G T A G T C G T C A T A C G C T A G A T C G
p-value:1e-57
log p-value:-1.335e+02
Information Content per bp:1.786
Number of Target Sequences with motif81.0
Percentage of Target Sequences with motif3.50%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.54%
Average Position of motif in Targets107.9 +/- 60.3bp
Average Position of motif in Background84.7 +/- 27.6bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Isl1/MA1608.1/Jaspar

Match Rank:1
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:SCCTGATG---
NNCTAATGGNN
 A T G C G A T C A T G C A C G T T C A G C G T A C G A T C A T G A C G T A C G T A C G T
A C G T T C A G G A T C C G A T C T G A C G T A G A C T C A T G C T A G T G C A G A C T

TFAP2A/MA0003.4/Jaspar

Match Rank:2
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--SCCTGATG----
NNGCCTGAGGCANN
 A C G T A C G T A T G C G A T C A T G C A C G T T C A G C G T A C G A T C A T G A C G T A C G T A C G T A C G T
A C G T C A T G A T C G T A G C A T G C A G C T A T C G T C G A T C A G A C T G T A G C G T C A T C G A A C G T

TFAP2C(var.2)/MA0814.2/Jaspar

Match Rank:3
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--SCCTGATG----
GGGCCTGAGGCGGG
 A C G T A C G T A T G C G A T C A T G C A C G T T C A G C G T A C G A T C A T G A C G T A C G T A C G T A C G T
A C T G C A T G A T C G T A G C A T G C A G C T T A C G T G C A T A C G T A C G T A G C A T C G T C A G A T C G

Zic1::Zic2/MA1628.1/Jaspar

Match Rank:4
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-SCCTGATG--
NNCCTGCTGNG
 A C G T A T G C G A T C A T G C A C G T T C A G C G T A C G A T C A T G A C G T A C G T
A G T C A T G C T G A C T A G C A G C T T C A G A T G C A C G T T C A G A G C T A T C G

HAND2/MA1638.1/Jaspar

Match Rank:5
Score:0.67
Offset:0
Orientation:forward strand
Alignment:SCCTGATG--
ACCAGATGGC
 A T G C G A T C A T G C A C G T T C A G C G T A C G A T C A T G A C G T A C G T
C T G A T G A C A T G C T C G A A C T G T C G A A G C T T C A G A C T G G A T C

TWIST1/MA1123.2/Jaspar

Match Rank:6
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--SCCTGATG---
ATTCCAGATGTTT
 A C G T A C G T A T G C G A T C A T G C A C G T T C A G C G T A C G A T C A T G A C G T A C G T A C G T
C G T A C G A T C G A T T G A C G T A C C G T A A C T G T G C A G A C T A C T G A C G T A G C T G C A T

HOXB4/MA1499.1/Jaspar

Match Rank:7
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:SCCTGATG--
--NTAATGAT
 A T G C G A T C A T G C A C G T T C A G C G T A C G A T C A T G A C G T A C G T
A C G T A C G T A G T C A G C T G T C A C G T A A G C T A C T G C T G A A G C T

HOXA4/MA1496.1/Jaspar

Match Rank:8
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:SCCTGATG--
--NTAATGAC
 A T G C G A T C A T G C A C G T T C A G C G T A C G A T C A T G A C G T A C G T
A C G T A C G T A G T C A G C T T C G A G T C A A G C T A C T G C T G A A G T C

AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---SCCTGATG-
ATGCCCTGAGGC
 A C G T A C G T A C G T A T G C G A T C A T G C A C G T T C A G C G T A C G A T C A T G A C G T
G C T A C G A T C A T G A T G C A G T C A G T C G A C T T A C G T C G A C T A G A C T G T A G C

HOXB3/MA0903.1/Jaspar

Match Rank:10
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:SCCTGATG---
-NNTAATTANN
 A T G C G A T C A T G C A C G T T C A G C G T A C G A T C A T G A C G T A C G T A C G T
A C G T A C T G A G T C C G A T C T G A C T G A A G C T A C G T C T G A A T C G G A C T