Information for 3-YTTGKTTC (Motif 5)

A G T C A C G T A C G T A C T G A C T G A G C T A C G T A G T C
Reverse Opposite:
A C T G C G T A C T G A G T A C A G T C C G T A C G T A C T A G
p-value:1e-73
log p-value:-1.692e+02
Information Content per bp:1.861
Number of Target Sequences with motif122.0
Percentage of Target Sequences with motif5.28%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.72%
Average Position of motif in Targets97.0 +/- 59.0bp
Average Position of motif in Background86.9 +/- 33.4bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox3/MA0514.1/Jaspar

Match Rank:1
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--YTTGKTTC
CCTTTGTTTT
 A C G T A C G T A G T C A C G T A C G T A C T G A C T G A G C T A C G T A G T C
A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A G C T A G C T

SRY/MA0084.1/Jaspar

Match Rank:2
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:YTTGKTTC-
ATTGTTTAN
 A G T C A C G T A C G T A C T G A C T G A G C T A C G T A G T C A C G T
G C T A A G C T A C G T C T A G C G A T C G A T G C A T G C T A G T A C

Sox6/MA0515.1/Jaspar

Match Rank:3
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--YTTGKTTC
CCATTGTTTT
 A C G T A C G T A G T C A C G T A C G T A C T G A C T G A G C T A C G T A G T C
A G T C A G T C C G T A A C G T A C G T A C T G A C G T A G C T G A C T A G C T

PRDM4/MA1647.1/Jaspar

Match Rank:4
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-YTTGKTTC--
GTCTGTTTCTA
 A C G T A G T C A C G T A C G T A C T G A C T G A G C T A C G T A G T C A C G T A C G T
C T A G C A G T T A G C C G A T T C A G G C A T A G C T G C A T G T A C G C A T G C T A

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:5
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--YTTGKTTC
CCATTGTTNY
 A C G T A C G T A G T C A C G T A C G T A C T G A C T G A G C T A C G T A G T C
A T G C G T A C C G T A A G C T G C A T T A C G A G C T A G C T A G T C A G C T

SOX10/MA0442.2/Jaspar

Match Rank:6
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---YTTGKTTC
NNCTTTGTTNN
 A C G T A C G T A C G T A G T C A C G T A C G T A C T G A C T G A G C T A C G T A G T C
A C G T A G C T T G A C C G A T C G A T C G A T T C A G C G A T A C G T G A C T G A C T

MF0011.1_HMG_class/Jaspar

Match Rank:7
Score:0.64
Offset:0
Orientation:forward strand
Alignment:YTTGKTTC
ATTGTT--
 A G T C A C G T A C G T A C T G A C T G A G C T A C G T A G T C
G C T A A C G T G A C T C T A G G C A T A G C T A C G T A C G T

FOXN3/MA1489.1/Jaspar

Match Rank:8
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:YTTGKTTC-
-TTGTTTAC
 A G T C A C G T A C G T A C T G A C T G A G C T A C G T A G T C A C G T
A C G T A C G T A C G T A C T G A C G T A C G T A C G T C G T A A G T C

SOX4/MA0867.2/Jaspar

Match Rank:9
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---YTTGKTTC
NCCTTTGTTC-
 A C G T A C G T A C G T A G T C A C G T A C G T A C T G A C T G A G C T A C G T A G T C
A G T C A G T C G A T C C G A T A G C T A G C T T A C G C G A T A G C T G A T C A C G T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:10
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--YTTGKTTC
YCTTTGTTCC
 A C G T A C G T A G T C A C G T A C G T A C T G A C T G A G C T A C G T A G T C
A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C