Information for 13-AGTGAT (Motif 60)

C G T A A C T G A C G T A C T G C G T A A C G T
Reverse Opposite:
C G T A A C G T A G T C C G T A A G T C A C G T
p-value:1e-20
log p-value:-4.764e+01
Information Content per bp:1.530
Number of Target Sequences with motif193.0
Percentage of Target Sequences with motif8.35%
Number of Background Sequences with motif14.3
Percentage of Background Sequences with motif4.04%
Average Position of motif in Targets94.9 +/- 53.5bp
Average Position of motif in Background99.8 +/- 58.3bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

GFI1/MA0038.2/Jaspar

Match Rank:1
Score:0.74
Offset:-3
Orientation:reverse strand
Alignment:---AGTGAT---
TGCAGTGATTTN
 A C G T A C G T A C G T C G T A A C T G A C G T A C T G C G T A A C G T A C G T A C G T A C G T
C A G T C T A G G A T C G T C A A T C G C G A T C A T G C G T A C G A T A C G T A C G T T C A G

PB0195.1_Zbtb3_2/Jaspar

Match Rank:2
Score:0.73
Offset:-8
Orientation:reverse strand
Alignment:--------AGTGAT--
NNNNTGCCAGTGATTG
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G A C G T A C T G C G T A A C G T A C G T A C G T
G C T A G C A T C G A T G A T C G A C T T C A G T G A C T A G C C G T A A C T G A G C T C A T G C G T A A G C T C G A T T C A G

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:3
Score:0.72
Offset:-3
Orientation:forward strand
Alignment:---AGTGAT-
TTRAGTGSYK
 A C G T A C G T A C G T C G T A A C T G A C G T A C T G C G T A A C G T A C G T
A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T

Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer

Match Rank:4
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:AGTGAT----
ATTGATTYND
 C G T A A C T G A C G T A C T G C G T A A C G T A C G T A C G T A C G T A C G T
C G T A A C G T A G C T A T C G G T C A A G C T G A C T A G C T T G A C C G A T

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:5
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---AGTGAT-
TTAAGTGCTT
 A C G T A C G T A C G T C G T A A C T G A C G T A C T G C G T A A C G T A C G T
A C G T C A G T T C G A C G T A A C T G A C G T C T A G A T G C A G C T A G C T

Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer

Match Rank:6
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--AGTGAT--
GCAGTGATTT
 A C G T A C G T C G T A A C T G A C G T A C T G C G T A A C G T A C G T A C G T
C T A G A G T C G C T A A T C G C G A T A C T G T C G A A C G T A C G T A C G T

Pax2/MA0067.1/Jaspar

Match Rank:7
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-AGTGAT-
NCGTGACN
 A C G T C G T A A C T G A C G T A C T G C G T A A C G T A C G T
T A C G G T A C C T A G A G C T T C A G C G T A G A T C C G A T

PH0134.1_Pbx1/Jaspar

Match Rank:8
Score:0.67
Offset:-5
Orientation:reverse strand
Alignment:-----AGTGAT------
NNNNNATTGATGNGTGN
 A C G T A C G T A C G T A C G T A C G T C G T A A C T G A C G T A C T G C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C T G G C A T C G A T C A G T G C T A C G A T A C G T A C T G C G T A G A C T A C T G C A T G C T A G G C A T T C A G C T G A

POL002.1_INR/Jaspar

Match Rank:9
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---AGTGAT
NNNANTGA-
 A C G T A C G T A C G T C G T A A C T G A C G T A C T G C G T A A C G T
T C G A T C G A C T A G C T G A T A G C C G A T A C T G G T C A A C G T

PB0144.1_Lef1_2/Jaspar

Match Rank:10
Score:0.67
Offset:-6
Orientation:reverse strand
Alignment:------AGTGAT----
NNANTGATTGATNTTN
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G A C G T A C T G C G T A A C G T A C G T A C G T A C G T A C G T
G C A T C G T A T C G A C A T G G A C T C T A G G T C A G A C T C G A T T A C G C G T A C G A T A T G C A G C T G C A T A T G C