Information for 4-TGCCATAY (Motif 7)

A C G T C T A G A G T C G T A C C G T A A G C T G C T A G A T C
Reverse Opposite:
C T A G C G A T C T G A C G A T C A T G T C A G A G T C C G T A
p-value:1e-71
log p-value:-1.651e+02
Information Content per bp:1.753
Number of Target Sequences with motif93.0
Percentage of Target Sequences with motif4.02%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.56%
Average Position of motif in Targets94.3 +/- 54.4bp
Average Position of motif in Background116.7 +/- 63.7bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:1
Score:0.70
Offset:0
Orientation:forward strand
Alignment:TGCCATAY
TGTCANYT
 A C G T C T A G A G T C G T A C C G T A A G C T G C T A G A T C
A G C T C A T G G C A T G A T C T G C A C T A G G A T C A C G T

Ddit3::Cebpa/MA0019.1/Jaspar

Match Rank:2
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---TGCCATAY-
AGATGCAATCCC
 A C G T A C G T A C G T A C G T C T A G A G T C G T A C C G T A A G C T G C T A G A T C A C G T
T C G A C T A G C T G A A G C T A C T G G T A C G T C A T G C A A G C T T G A C T A G C A G T C

CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:3
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-TGCCATAY-
TTGCAACATN
 A C G T A C G T C T A G A G T C G T A C C G T A A G C T G C T A G A T C A C G T
C A G T A C G T C T A G A G T C G T C A C G T A G A T C G C T A A G C T G A T C

NEUROD2/MA0668.1/Jaspar

Match Rank:4
Score:0.68
Offset:1
Orientation:forward strand
Alignment:TGCCATAY---
-GCCATATGGT
 A C G T C T A G A G T C G T A C C G T A A G C T G C T A G A T C A C G T A C G T A C G T
A C G T T C A G T G A C A T G C C T G A A G C T T G C A A G C T A C T G A C T G G A C T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:5
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-TGCCATAY-
ATGCCAGACN
 A C G T A C G T C T A G A G T C G T A C C G T A A G C T G C T A G A T C A C G T
C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:6
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-TGCCATAY
TTGCCAAG-
 A C G T A C G T C T A G A G T C G T A C C G T A A G C T G C T A G A T C
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T

TCF21(var.2)/MA1568.1/Jaspar

Match Rank:7
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:TGCCATAY----
NGCCATATGGTG
 A C G T C T A G A G T C G T A C C G T A A G C T G C T A G A T C A C G T A C G T A C G T A C G T
A G T C C T A G T G A C G T A C C T G A A G C T T G C A G A C T A T C G A T C G G A C T T C A G

NFIA/MA0670.1/Jaspar

Match Rank:8
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--TGCCATAY
GGTGCCAAGT
 A C G T A C G T A C G T C T A G A G T C G T A C C G T A A G C T G C T A G A T C
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer

Match Rank:9
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---TGCCATAY
VGCTGGCA---
 A C G T A C G T A C G T A C G T C T A G A G T C G T A C C G T A A G C T G C T A G A T C
T A G C T A C G A T G C C A G T T C A G T A C G G A T C C T G A A C G T A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---TGCCATAY-
AGGTGHCAGACA
 A C G T A C G T A C G T A C G T C T A G A G T C G T A C C G T A A G C T G C T A G A T C A C G T
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A