Information for 5-GCTGGTGTCTAG (Motif 10)

A C T G A G T C A C G T A C T G A C T G A C G T A T C G A G C T A G T C A C G T C G T A A C T G
Reverse Opposite:
A G T C A C G T C G T A A C T G C T G A A T G C C G T A A G T C A G T C C G T A A C T G A G T C
p-value:1e-17
log p-value:-3.926e+01
Information Content per bp:1.936
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif1.28%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets69.6 +/- 43.7bp
Average Position of motif in Background73.3 +/- 50.1bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad4/MA1153.1/Jaspar

Match Rank:1
Score:0.64
Offset:5
Orientation:forward strand
Alignment:GCTGGTGTCTAG-
-----TGTCTAGA
 A C T G A G T C A C G T A C T G A C T G A C G T A T C G A G C T A G T C A C G T C G T A A C T G A C G T
A C G T A C G T A C G T A C G T A C G T G A C T A C T G A C G T A G T C A C G T C T G A A C T G T G C A

PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer

Match Rank:2
Score:0.60
Offset:2
Orientation:forward strand
Alignment:GCTGGTGTCTAG--
--AGGTCTCTAACC
 A C T G A G T C A C G T A C T G A C T G A C G T A T C G A G C T A G T C A C G T C G T A A C T G A C G T A C G T
A C G T A C G T C T G A T C A G A C T G C A G T A G T C G A C T A G T C A C G T C G T A G C T A A T G C G A T C

TCF3/MA0522.3/Jaspar

Match Rank:3
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--GCTGGTGTCTAG
NNGCAGGTGNN---
 A C G T A C G T A C T G A G T C A C G T A C T G A C T G A C G T A T C G A G C T A G T C A C G T C G T A A C T G
T A C G A T C G T C A G A G T C T C G A A T C G T A C G A G C T T A C G A T G C A T C G A C G T A C G T A C G T

TCF12(var.2)/MA1648.1/Jaspar

Match Rank:4
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--GCTGGTGTCTAG
NNGCAGGTGNN---
 A C G T A C G T A C T G A G T C A C G T A C T G A C T G A C G T A T C G A G C T A G T C A C G T C G T A A C T G
T A G C T C A G T C A G A G T C T C G A A T C G T A C G A G C T T C A G A T G C A T C G A C G T A C G T A C G T

SMAD3/MA0795.1/Jaspar

Match Rank:5
Score:0.60
Offset:5
Orientation:reverse strand
Alignment:GCTGGTGTCTAG---
-----TGTCTAGACG
 A C T G A G T C A C G T A C T G A C T G A C G T A T C G A G C T A G T C A C G T C G T A A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G A T C A T G C A G T T A G C A C G T T C G A A T C G G C T A G A T C C T A G

SMAD5/MA1557.1/Jaspar

Match Rank:6
Score:0.59
Offset:5
Orientation:reverse strand
Alignment:GCTGGTGTCTAG---
-----TGTCTAGACA
 A C T G A G T C A C G T A C T G A C T G A C G T A T C G A G C T A G T C A C G T C G T A A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G A T C T A G C A G T A T G C A C G T T G C A A C T G G T C A A G T C C T G A

Snail1(Zf)/LS174T-SNAIL1.HA-ChIP-Seq(GSE127183)/Homer

Match Rank:7
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GCTGGTGTCTAG
RGCAGGTGYA---
 A C G T A C T G A G T C A C G T A C T G A C T G A C G T A T C G A G C T A G T C A C G T C G T A A C T G
T C G A T C A G T A G C C G T A T A C G T A C G A G C T C A T G A G C T T C G A A C G T A C G T A C G T

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:8
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--GCTGGTGTCTAG
SDGCAGGTGCNS--
 A C G T A C G T A C T G A G T C A C G T A C T G A C T G A C G T A T C G A G C T A G T C A C G T C G T A A C T G
A T C G C T A G C T A G A G T C C G T A A C T G A C T G A C G T A C T G A T G C G A T C A T G C A C G T A C G T

ZNF341/MA1655.1/Jaspar

Match Rank:9
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---GCTGGTGTCTAG
NNGGCTGTTCCN---
 A C G T A C G T A C G T A C T G A G T C A C G T A C T G A C T G A C G T A T C G A G C T A G T C A C G T C G T A A C T G
A T C G A G C T C A T G T A C G T A G C A G C T T A C G G A C T A C G T A T G C G A T C G T A C A C G T A C G T A C G T

ASCL1(var.2)/MA1631.1/Jaspar

Match Rank:10
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---GCTGGTGTCTAG
NNGGCAGGTGCNN--
 A C G T A C G T A C G T A C T G A G T C A C G T A C T G A C T G A C G T A T C G A G C T A G T C A C G T C G T A A C T G
T A C G T A C G C T A G T A C G A T G C T C G A A T C G T A C G G A C T T A C G A T G C G C A T T A C G A C G T A C G T