Information for 9-TGAATTAACTGA (Motif 16)

C A G T T C A G G T C A C G T A C A G T C G A T G T C A G C T A G T A C G A C T C A T G C G T A
Reverse Opposite:
G A C T G T A C C T G A A C T G C A G T C A G T G C T A G T C A G A C T A C G T A G T C G T C A
p-value:1e-14
log p-value:-3.415e+01
Information Content per bp:1.722
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif1.53%
Number of Background Sequences with motif5.3
Percentage of Background Sequences with motif0.11%
Average Position of motif in Targets79.2 +/- 57.1bp
Average Position of motif in Background105.3 +/- 50.2bp
Strand Bias (log2 ratio + to - strand density)1.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0081.1_Tcf1_1/Jaspar

Match Rank:1
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--TGAATTAACTGA---
ACTTAGTTAACTAAAAA
 A C G T A C G T C A G T T C A G G T C A C G T A C A G T C G A T G T C A G C T A G T A C G A C T C A T G C G T A A C G T A C G T A C G T
T G C A G A T C A G C T G A C T T C G A C T A G G A C T C G A T G C T A C G T A A G T C G A C T C T G A T C G A C T G A G T C A C T G A

PH0001.1_Alx3/Jaspar

Match Rank:2
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----TGAATTAACTGA-
TAAACTAATTAGCTGAG
 A C G T A C G T A C G T A C G T C A G T T C A G G T C A C G T A C A G T C G A T G T C A G C T A G T A C G A C T C A T G C G T A A C G T
C G A T T C G A G C T A T C G A G A T C A G C T G T C A C T G A A G C T A C G T C T G A C T A G G A T C A G C T T A C G G C T A T C A G

PH0128.1_Otp/Jaspar

Match Rank:3
Score:0.67
Offset:-4
Orientation:reverse strand
Alignment:----TGAATTAACTGA-
CNNATTAATTAATTNNN
 A C G T A C G T A C G T A C G T C A G T T C A G G T C A C G T A C A G T C G A T G T C A G C T A G T A C G A C T C A T G C G T A A C G T
G T A C G T A C G T C A T C G A G A C T G A C T T C G A C T G A A G C T A C G T C T G A C T G A A G C T C G A T C T G A A G T C A C T G

PH0167.1_Tcf1/Jaspar

Match Rank:4
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--TGAATTAACTGA---
CCTTAGTTAACTAAAAT
 A C G T A C G T C A G T T C A G G T C A C G T A C A G T C G A T G T C A G C T A G T A C G A C T C A T G C G T A A C G T A C G T A C G T
G A T C A T G C A C G T A G C T T C A G A T C G G A C T G C A T C G T A C G T A A T G C G A C T C T G A T G C A C G T A C T G A A C G T

PH0011.1_Alx1_2/Jaspar

Match Rank:5
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----TGAATTAACTGA-
CGCATTAATTAATTGGC
 A C G T A C G T A C G T A C G T C A G T T C A G G T C A C G T A C A G T C G A T G T C A G C T A G T A C G A C T C A T G C G T A A C G T
A G T C T C A G G T A C C T G A G A C T G A C T C T G A C G T A G A C T A G C T C T G A C T G A A G C T A G C T C T A G C T A G T G A C

Lhx3/MA0135.1/Jaspar

Match Rank:6
Score:0.66
Offset:1
Orientation:forward strand
Alignment:TGAATTAACTGA--
-AAATTAATTAATC
 C A G T T C A G G T C A C G T A C A G T C G A T G T C A G C T A G T A C G A C T C A T G C G T A A C G T A C G T
A C G T C G T A T C G A C G T A A C G T A C G T C G T A C G T A G A C T A G C T G C T A C G T A G A C T A G T C

PH0176.1_Vsx1/Jaspar

Match Rank:7
Score:0.65
Offset:-5
Orientation:reverse strand
Alignment:-----TGAATTAACTGA
ANTNATTAATTAACTNG
 A C G T A C G T A C G T A C G T A C G T C A G T T C A G G T C A C G T A C A G T C G A T G T C A G C T A G T A C G A C T C A T G C G T A
T C G A C G T A A C G T G A C T C T G A G A C T G A C T G T C A C G T A G A C T A C G T C T G A C T G A G A T C C A G T A T G C C A T G

PH0095.1_Lhx5/Jaspar

Match Rank:8
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----TGAATTAACTGA-
CGAATTAATTAAATACT
 A C G T A C G T A C G T A C G T C A G T T C A G G T C A C G T A C A G T C G A T G T C A G C T A G T A C G A C T C A T G C G T A A C G T
T A G C C T A G G C T A C T G A G A C T G A C T T C G A C G T A C G A T A C G T C T G A C T G A G C T A G C A T G T C A G T A C A G C T

PH0149.1_Pou3f4/Jaspar

Match Rank:9
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--TGAATTAACTGA---
AATTAATTAATTAATTC
 A C G T A C G T C A G T T C A G G T C A C G T A C A G T C G A T G T C A G C T A G T A C G A C T C A T G C G T A A C G T A C G T A C G T
C T G A T G C A G C A T C A G T G T C A G C T A C G A T C G A T G C T A C G T A C A G T C A G T G C T A C T G A C A G T C G A T A G T C

PH0136.1_Phox2b/Jaspar

Match Rank:10
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----TGAATTAACTGA-
CNNNTTAATTAATTNNN
 A C G T A C G T A C G T A C G T C A G T T C A G G T C A C G T A C A G T C G A T G T C A G C T A G T A C G A C T C A T G C G T A A C G T
A T G C T A G C G A C T T C G A G A C T G A C T T C G A C G T A G A C T A G C T C T G A C T G A A C G T C A G T T G A C A G T C A T C G