Information for 13-WGCCAYTGACCT (Motif 22)

C G A T A T C G A G T C A G T C C G T A A G T C G C A T A C T G G T C A A G T C A G T C A C G T
Reverse Opposite:
C G T A A C T G A C T G A C G T A G T C C G T A C T A G A C G T C T A G A C T G A T G C C G T A
p-value:1e-14
log p-value:-3.244e+01
Information Content per bp:1.842
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.11%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets89.4 +/- 56.3bp
Average Position of motif in Background119.1 +/- 59.6bp
Strand Bias (log2 ratio + to - strand density)1.8
Multiplicity (# of sites on avg that occur together)1.38
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer

Match Rank:1
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-WGCCAYTGACCT-
AGGTCANTGACCTN
 A C G T C G A T A T C G A G T C A G T C C G T A A G T C G C A T A C T G G T C A A G T C A G T C A C G T A C G T
T C G A C A T G C A T G A C G T A T G C T C G A C T G A A G C T T A C G T G C A G T A C G A T C A G C T A G T C

NR2F1/MA0017.2/Jaspar

Match Rank:2
Score:0.70
Offset:2
Orientation:reverse strand
Alignment:WGCCAYTGACCT---
--CNNTTGACCTTTG
 C G A T A T C G A G T C A G T C C G T A A G T C G C A T A C T G G T C A A G T C A G T C A C G T A C G T A C G T A C G T
A C G T A C G T G A T C A G T C A G T C C A G T A G C T A C T G C G T A A G T C A T G C A G C T G A C T C G A T C A T G

Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer

Match Rank:3
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--WGCCAYTGACCT--
TGACCCAGTGACCTAC
 A C G T A C G T C G A T A T C G A G T C A G T C C G T A A G T C G C A T A C T G G T C A A G T C A G T C A C G T A C G T A C G T
G C A T T A C G G C T A A T G C G T A C A G T C T G C A T A C G C G A T C A T G T G C A T G A C G A T C G A C T T C G A T A G C

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:4
Score:0.69
Offset:6
Orientation:reverse strand
Alignment:WGCCAYTGACCT--
------TGACCTYA
 C G A T A T C G A G T C A G T C C G T A A G T C G C A T A C T G G T C A A G T C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:5
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:WGCCAYTGACCT
TGACCTTGACCT
 C G A T A T C G A G T C A G T C C G T A A G T C G C A T A C T G G T C A A G T C A G T C A C G T
G A C T T C A G T G C A A G T C A G T C G A C T A C G T T A C G C G T A G T A C G A T C G A C T

NR1D1/MA1531.1/Jaspar

Match Rank:6
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---WGCCAYTGACCT
NTGACCTACTGACCC
 A C G T A C G T A C G T C G A T A T C G A G T C A G T C C G T A A G T C G C A T A C T G G T C A A G T C A G T C A C G T
G A T C G A C T T C A G T G C A G A T C G T A C A G C T T G C A A T G C C G A T T C A G T G C A G A T C G T A C A G T C

NR1H4/MA1110.1/Jaspar

Match Rank:7
Score:0.67
Offset:2
Orientation:forward strand
Alignment:WGCCAYTGACCT-
--TCAATGACCTA
 C G A T A T C G A G T C A G T C C G T A A G T C G C A T A C T G G T C A A G T C A G T C A C G T A C G T
A C G T A C G T A C G T A G T C C G T A C T G A A G C T C T A G G T C A G T A C G T A C A G C T G C T A

NR2F1(var.3)/MA1538.1/Jaspar

Match Rank:8
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--WGCCAYTGACCT-
AAGGTCATTGACCTT
 A C G T A C G T C G A T A T C G A G T C A G T C C G T A A G T C G C A T A C T G G T C A A G T C A G T C A C G T A C G T
C T G A C T G A A C T G C T A G A C G T A G T C T C G A A C G T A G C T T C A G G T C A A G T C T G A C G A C T G A C T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:9
Score:0.67
Offset:6
Orientation:reverse strand
Alignment:WGCCAYTGACCT
------TGACCT
 C G A T A T C G A G T C A G T C C G T A A G T C G C A T A C T G G T C A A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T

RORA/MA0071.1/Jaspar

Match Rank:10
Score:0.66
Offset:6
Orientation:reverse strand
Alignment:WGCCAYTGACCT----
------TGACCTTGAT
 C G A T A T C G A G T C A G T C C G T A A G T C G C A T A C T G G T C A A G T C A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T