Information for 10-TTTAAAGGAG (Motif 42)

A C G T A C G T A C G T C G T A T C G A C G T A A T C G A C T G C G T A A C T G
Reverse Opposite:
A G T C A C G T A G T C A T G C A C G T A C G T A C G T C G T A C G T A C G T A
p-value:1e-11
log p-value:-2.592e+01
Information Content per bp:1.949
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif0.94%
Number of Background Sequences with motif2.3
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets113.7 +/- 40.5bp
Average Position of motif in Background96.8 +/- 14.3bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

LIN54/MA0619.1/Jaspar

Match Rank:1
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--TTTAAAGGAG
NATTCAAAT---
 A C G T A C G T A C G T A C G T A C G T C G T A T C G A C G T A A T C G A C T G C G T A A C T G
C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T A C G T A C G T A C G T

Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:2
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--TTTAAAGGAG
NTTTTATDRG--
 A C G T A C G T A C G T A C G T A C G T C G T A T C G A C G T A A T C G A C T G C G T A A C T G
C T A G G C A T A C G T G C A T G A C T C G T A G A C T C A T G C T A G A T C G A C G T A C G T

LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer

Match Rank:3
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--TTTAAAGGAG
ASATCAAAGG--
 A C G T A C G T A C G T A C G T A C G T C G T A T C G A C G T A A T C G A C T G C G T A A C T G
C T G A A T C G G C T A G C A T T A G C C G T A T C G A C T G A T C A G T A C G A C G T A C G T

PB0203.1_Zfp691_2/Jaspar

Match Rank:4
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:TTTAAAGGAG-------
NTNNNAGGAGTCTCNTN
 A C G T A C G T A C G T C G T A T C G A C G T A A T C G A C T G C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A T C G C A G T A C G T G C T A C T A G C T G A A C T G A C T G C G T A A T C G A G C T G T A C G C A T T G A C T A C G G A C T G T C A

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--TTTAAAGGAG
ACATCAAAGG--
 A C G T A C G T A C G T A C G T A C G T C G T A T C G A C G T A A T C G A C T G C G T A A C T G
C T G A A T G C G C T A C G A T A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:6
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--TTTAAAGGAG
ACWTCAAAGG--
 A C G T A C G T A C G T A C G T A C G T C G T A T C G A C G T A A T C G A C T G C G T A A C T G
C G T A A T G C C G A T A C G T A G T C C G T A C G T A C G T A C T A G A T C G A C G T A C G T

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:7
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:TTTAAAGGAG
TTTAATTGCN
 A C G T A C G T A C G T C G T A T C G A C G T A A T C G A C T G C G T A A C T G
C G A T A G C T C G A T G C T A C G T A G A C T C A G T C T A G T A G C A T G C

TATA-Box(TBP)/Promoter/Homer

Match Rank:8
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---TTTAAAGGAG
CCTTTTATAGNC-
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A T C G A C G T A A T C G A C T G C G T A A C T G
A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C A C G T

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:9
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----TTTAAAGGAG
CGGTTTCAAA----
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A T C G A C G T A A T C G A C T G C G T A A C T G
T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A A C G T A C G T A C G T A C G T

TCF7/MA0769.2/Jaspar

Match Rank:10
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--TTTAAAGGAG
ANATCAAAGNN-
 A C G T A C G T A C G T A C G T A C G T C G T A T C G A C G T A A T C G A C T G C G T A A C T G
C G T A A T G C G C T A G C A T T G A C G C T A G C T A C G T A A C T G T C A G T G C A A C G T