Information for 3-GAGTGGTT (Motif 62)

C T A G C T G A A C T G A C G T C T A G A C T G A G C T A C G T
Reverse Opposite:
G T C A C T G A G T A C G A T C T G C A T G A C G A C T A G T C
p-value:1e-8
log p-value:-2.047e+01
Information Content per bp:1.798
Number of Target Sequences with motif96.0
Percentage of Target Sequences with motif8.16%
Number of Background Sequences with motif204.5
Percentage of Background Sequences with motif4.23%
Average Position of motif in Targets102.1 +/- 57.5bp
Average Position of motif in Background104.7 +/- 54.4bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:1
Score:0.80
Offset:-2
Orientation:forward strand
Alignment:--GAGTGGTT
TTRAGTGSYK
 A C G T A C G T C T A G C T G A A C T G A C G T C T A G A C T G A G C T A C G T
A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T

NKX2-2/MA1645.1/Jaspar

Match Rank:2
Score:0.77
Offset:-5
Orientation:reverse strand
Alignment:-----GAGTGGTT-
NNNTTGAGTGGNNN
 A C G T A C G T A C G T A C G T A C G T C T A G C T G A A C T G A C G T C T A G A C T G A G C T A C G T A C G T
C G A T C G A T A G T C A G C T C A G T T A C G C G T A C A T G C G A T C T A G A C T G G C A T C G A T C T G A

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:3
Score:0.75
Offset:-2
Orientation:reverse strand
Alignment:--GAGTGGTT
TTGAGTGSTT
 A C G T A C G T C T A G C T G A A C T G A C G T C T A G A C T G A G C T A C G T
G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:4
Score:0.75
Offset:-3
Orientation:reverse strand
Alignment:---GAGTGGTT
CTTGAGTGGCT
 A C G T A C G T A C G T C T A G C T G A A C T G A C G T C T A G A C T G A G C T A C G T
A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:5
Score:0.74
Offset:-2
Orientation:reverse strand
Alignment:--GAGTGGTT
TTAAGTGCTT
 A C G T A C G T C T A G C T G A A C T G A C G T C T A G A C T G A G C T A C G T
A C G T C A G T T C G A C G T A A C T G A C G T C T A G A T G C A G C T A G C T

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:6
Score:0.73
Offset:-1
Orientation:reverse strand
Alignment:-GAGTGGTT-
NNTGTGGTTT
 A C G T C T A G C T G A A C T G A C G T C T A G A C T G A G C T A C G T A C G T
A C G T G A C T C A G T A C T G G A C T A C T G A C T G A G C T A G C T C G A T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:7
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---GAGTGGTT
CTYRAGTGSY-
 A C G T A C G T A C G T C T A G C T G A A C T G A C G T C T A G A C T G A G C T A C G T
A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C A C G T

Nkx3-2/MA0122.3/Jaspar

Match Rank:8
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---GAGTGGTT--
NTTAAGTGGTTNN
 A C G T A C G T A C G T C T A G C T G A A C T G A C G T C T A G A C T G A G C T A C G T A C G T A C G T
C G A T G C A T C G A T C T G A C G T A C A T G C G A T C T A G A C T G G C A T G C A T G C T A G C A T

PH0004.1_Nkx3-2/Jaspar

Match Rank:9
Score:0.69
Offset:-6
Orientation:reverse strand
Alignment:------GAGTGGTT---
NTNNTTAAGTGGTTANN
 A C G T A C G T A C G T A C G T A C G T A C G T C T A G C T G A A C T G A C G T C T A G A C T G A G C T A C G T A C G T A C G T A C G T
C T A G C A G T A C G T A T C G G C A T C G A T C T G A C T G A A C T G C G A T C T A G A T C G C G A T A G C T C G T A C G A T A C T G

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:10
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:GAGTGGTT--
CTGTGGTTTN
 C T A G C T G A A C T G A C G T C T A G A C T G A G C T A C G T A C G T A C G T
G A T C A C G T A C T G A G C T A C T G A C T G A G C T A G C T C G A T A T C G