Information for 5-CCTCAGCCACGGAGC (Motif 12)

A G T C A G T C A G C T A G T C C G T A A C T G A G T C A G T C C G T A G A T C A C T G C T A G G T C A A T C G A G T C
Reverse Opposite:
A C T G A T G C A C G T A G T C A G T C C A T G A C G T A C T G A C T G A G T C A C G T A C T G C T G A A C T G A C T G
p-value:1e-41
log p-value:-9.624e+01
Information Content per bp:1.901
Number of Target Sequences with motif47.0
Percentage of Target Sequences with motif6.47%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.70%
Average Position of motif in Targets93.8 +/- 53.5bp
Average Position of motif in Background93.6 +/- 4.9bp
Strand Bias (log2 ratio + to - strand density)-0.9
Multiplicity (# of sites on avg that occur together)1.13
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TFAP2C(var.2)/MA0814.2/Jaspar

Match Rank:1
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----CCTCAGCCACGGAGC
NNCGCCTCAGGCNN-----
 A C G T A C G T A C G T A C G T A G T C A G T C A G C T A G T C C G T A A C T G A G T C A G T C C G T A G A T C A C T G C T A G G T C A A T C G A G T C
T A G C A G T C T A G C A T C G A T G C A T G C A C G T A T G C T C G A T A C G A T C G T A G C G T A C T G A C A C G T A C G T A C G T A C G T A C G T

TFAP2A/MA0003.4/Jaspar

Match Rank:2
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----CCTCAGCCACGGAGC
ATTGCCTCAGGCCA-----
 A C G T A C G T A C G T A C G T A G T C A G T C A G C T A G T C C G T A A C T G A G T C A G T C C G T A G A T C A C T G C T A G G T C A A T C G A G T C
T G C A A G C T C A G T A T C G T G A C A G T C A G C T T A G C T C G A T A C G A T C G T A G C G T A C T G C A A C G T A C G T A C G T A C G T A C G T

POL013.1_MED-1/Jaspar

Match Rank:3
Score:0.57
Offset:9
Orientation:reverse strand
Alignment:CCTCAGCCACGGAGC
---------CGGAGC
 A G T C A G T C A G C T A G T C C G T A A C T G A G T C A G T C C G T A G A T C A C T G C T A G G T C A A T C G A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A C T G A C T G C G T A A C T G A G T C

KLF4/MA0039.4/Jaspar

Match Rank:4
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--CCTCAGCCACGGAGC
CGCCCCACCCCC-----
 A C G T A C G T A G T C A G T C A G C T A G T C C G T A A C T G A G T C A G T C C G T A G A T C A C T G C T A G G T C A A T C G A G T C
T A G C A T C G G A T C G A T C G T A C G T A C C T G A A T G C T A G C G A T C G T A C A T G C A C G T A C G T A C G T A C G T A C G T

Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-CCTCAGCCACGGAGC
GCCACACCCA------
 A C G T A G T C A G T C A G C T A G T C C G T A A C T G A G T C A G T C C G T A G A T C A C T G C T A G G T C A A T C G A G T C
C T A G G T A C A G T C T G C A A G T C C T G A A G T C A G T C A G T C G C T A A C G T A C G T A C G T A C G T A C G T A C G T

TFAP2B(var.2)/MA0812.1/Jaspar

Match Rank:6
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--CCTCAGCCACGGAGC
AGCCTCAGGCA------
 A C G T A C G T A G T C A G T C A G C T A G T C C G T A A C T G A G T C A G T C C G T A G A T C A C T G C T A G G T C A A T C G A G T C
G T C A T A C G A T G C A G T C A G C T T A G C T G C A T C A G T A C G T A G C C G T A A C G T A C G T A C G T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:7
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:CCTCAGCCACGGAGC
--BCAGACWA-----
 A G T C A G T C A G C T A G T C C G T A A C T G A G T C A G T C C G T A G A T C A C T G C T A G G T C A A T C G A G T C
A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T

Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer

Match Rank:8
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:CCTCAGCCACGGAGC
TCCCAGMCRAGCCCC
 A G T C A G T C A G C T A G T C C G T A A C T G A G T C A G T C C G T A G A T C A C T G C T A G G T C A A T C G A G T C
A G C T A G T C A G T C A G T C C T G A T C A G T G C A G A T C T C G A C G T A A C T G A T G C G T A C G T A C G A T C

EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer

Match Rank:9
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--CCTCAGCCACGGAGC
GGCCACACCCAN-----
 A C G T A C G T A G T C A G T C A G C T A G T C C G T A A C T G A G T C A G T C C G T A G A T C A C T G C T A G G T C A A T C G A G T C
C T A G C T A G T G A C A G T C G T C A A G T C C T G A A G T C A G T C A G T C G C T A A C T G A C G T A C G T A C G T A C G T A C G T

Klf1/MA0493.1/Jaspar

Match Rank:10
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--CCTCAGCCACGGAGC
GGCCACACCCA------
 A C G T A C G T A G T C A G T C A G C T A G T C C G T A A C T G A G T C A G T C C G T A G A T C A C T G C T A G G T C A A T C G A G T C
C T A G T C A G T G A C G A T C G T C A A G T C C T G A A G T C A G T C A G T C G C T A A C G T A C G T A C G T A C G T A C G T A C G T