Information for 15-GCGACAWT (Motif 46)

T C A G T A G C C A T G C T G A A T G C T G C A C G T A A G C T
Reverse Opposite:
T C G A G C A T A C G T A T C G G A C T G T A C A T C G A G T C
p-value:1e-21
log p-value:-4.929e+01
Information Content per bp:1.657
Number of Target Sequences with motif30.0
Percentage of Target Sequences with motif4.13%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.70%
Average Position of motif in Targets102.8 +/- 52.0bp
Average Position of motif in Background68.5 +/- 17.6bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox17/MA0078.1/Jaspar

Match Rank:1
Score:0.83
Offset:2
Orientation:reverse strand
Alignment:GCGACAWT---
--GACAATGNN
 T C A G T A G C C A T G C T G A A T G C T G C A C G T A A G C T A C G T A C G T A C G T
A C G T A C G T T A C G G T C A A G T C C G T A C T G A C G A T C T A G C G T A C T A G

Sox7(HMG)/ESC-Sox7-ChIP-Seq(GSE133899)/Homer

Match Rank:2
Score:0.75
Offset:-2
Orientation:forward strand
Alignment:--GCGACAWT--
VVRRAACAATGG
 A C G T A C G T T C A G T A G C C A T G C T G A A T G C T G C A C G T A A G C T A C G T A C G T
T G A C T A G C T C A G T C G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T A C G

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:3
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:GCGACAWT--
RNAACAATGG
 T C A G T A G C C A T G C T G A A T G C T G C A C G T A A G C T A C G T A C G T
T C G A T C A G T C G A T C G A A T G C C G T A T C G A G C A T C A T G T A C G

SOX13/MA1120.1/Jaspar

Match Rank:4
Score:0.74
Offset:1
Orientation:forward strand
Alignment:GCGACAWT----
-AAACAATGGCA
 T C A G T A G C C A T G C T G A A T G C T G C A C G T A A G C T A C G T A C G T A C G T A C G T
A C G T C T G A T C G A C T G A A G T C G C T A C T G A G C A T C T A G T C A G T G A C G C T A

PB0183.1_Sry_2/Jaspar

Match Rank:5
Score:0.73
Offset:-4
Orientation:forward strand
Alignment:----GCGACAWT-----
TCACGGAACAATAGGTG
 A C G T A C G T A C G T A C G T T C A G T A G C C A T G C T G A A T G C T G C A C G T A A G C T A C G T A C G T A C G T A C G T A C G T
G A C T G A T C C G T A G T A C C A T G T C A G T G C A C G T A A G T C C T G A C G T A G C A T C T G A C T A G T C A G G A C T T A C G

PB0173.1_Sox21_2/Jaspar

Match Rank:6
Score:0.73
Offset:-4
Orientation:reverse strand
Alignment:----GCGACAWT-----
NNNNNGAACAATTGANN
 A C G T A C G T A C G T A C G T T C A G T A G C C A T G C T G A A T G C T G C A C G T A A G C T A C G T A C G T A C G T A C G T A C G T
A G C T G T C A C T A G G T A C A C T G T A C G T C G A C G T A A T G C C G T A T C G A G C A T C G A T T A C G T C G A A G C T A C G T

DMRTA2/MA1478.1/Jaspar

Match Rank:7
Score:0.73
Offset:-4
Orientation:forward strand
Alignment:----GCGACAWT
AATTGTTACATT
 A C G T A C G T A C G T A C G T T C A G T A G C C A T G C T G A A T G C T G C A C G T A A G C T
G C T A C G T A G C A T A G C T A C T G G C A T G C A T C T G A A G T C C G T A C G A T A C G T

SOX2/MA0143.4/Jaspar

Match Rank:8
Score:0.72
Offset:1
Orientation:forward strand
Alignment:GCGACAWT----
-AAACAATGGAA
 T C A G T A G C C A T G C T G A A T G C T G C A C G T A A G C T A C G T A C G T A C G T A C G T
A C G T C G T A C G T A G C T A G A T C G C T A T C G A C G A T C T A G C T A G C G T A G C T A

MF0011.1_HMG_class/Jaspar

Match Rank:9
Score:0.72
Offset:2
Orientation:reverse strand
Alignment:GCGACAWT
--AACAAT
 T C A G T A G C C A T G C T G A A T G C T G C A C G T A A G C T
A C G T A C G T T C G A C G T A G A T C C T G A T G C A C G A T

PB0070.1_Sox30_1/Jaspar

Match Rank:10
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--GCGACAWT------
AATGAACAATGGAATT
 A C G T A C G T T C A G T A G C C A T G C T G A A T G C T G C A C G T A A G C T A C G T A C G T A C G T A C G T A C G T A C G T
C T G A G C A T C A G T A T C G T C G A C G T A A G T C G C T A C T G A C G A T C A T G T C A G G C T A G T C A G A C T G A C T