Information for 2-TCAGGAGG (Motif 5)

A C G T A G T C C G T A A C T G A T C G C T G A A C T G A C T G
Reverse Opposite:
A G T C A G T C G A C T A T G C G T A C A C G T A C T G C G T A
p-value:1e-48
log p-value:-1.114e+02
Information Content per bp:1.925
Number of Target Sequences with motif52.0
Percentage of Target Sequences with motif7.16%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.70%
Average Position of motif in Targets101.8 +/- 59.2bp
Average Position of motif in Background108.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zic1::Zic2/MA1628.1/Jaspar

Match Rank:1
Score:0.79
Offset:-1
Orientation:forward strand
Alignment:-TCAGGAGG--
CACAGCAGGGG
 A C G T A C G T A G T C C G T A A C T G A T C G C T G A A C T G A C T G A C G T A C G T
T A G C T C G A A G T C T G C A T A C G A G T C T C G A A T C G A C T G T A C G T C A G

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:2
Score:0.77
Offset:-2
Orientation:reverse strand
Alignment:--TCAGGAGG
DCTCAGCAGG
 A C G T A C G T A C G T A G T C C G T A A C T G A T C G C T G A A C T G A C T G
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-TCAGGAGG---
CACAGCAGGGGG
 A C G T A C G T A G T C C G T A A C T G A T C G C T G A A C T G A C T G A C G T A C G T A C G T
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

Zic2/MA1629.1/Jaspar

Match Rank:4
Score:0.75
Offset:-3
Orientation:forward strand
Alignment:---TCAGGAGG---
CTCACAGCAGGGGG
 A C G T A C G T A C G T A C G T A G T C C G T A A C T G A T C G C T G A A C T G A C T G A C G T A C G T A C G T
T G A C C A G T T G A C G C T A T A G C G T C A T A C G A G T C C T G A C A T G A T C G C T A G T C A G T C A G

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:5
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--TCAGGAGG-----
DCHCAGCAGGRGGCC
 A C G T A C G T A C G T A G T C C G T A A C T G A T C G C T G A A C T G A C T G A C G T A C G T A C G T A C G T A C G T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

PB0205.1_Zic1_2/Jaspar

Match Rank:6
Score:0.71
Offset:-4
Orientation:forward strand
Alignment:----TCAGGAGG---
CCACACAGCAGGAGA
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G A T C G C T G A A C T G A C T G A C G T A C G T A C G T
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

Zic2(Zf)/ESC-Zic2-ChIP-Seq(SRP197560)/Homer

Match Rank:7
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-TCAGGAGG---
CHCAGCRGGRGG
 A C G T A C G T A G T C C G T A A C T G A T C G C T G A A C T G A C T G A C G T A C G T A C G T
T G A C G T C A A G T C G C T A C T A G A G T C C T G A C A T G A C T G C T A G T A C G T C A G

PB0206.1_Zic2_2/Jaspar

Match Rank:8
Score:0.70
Offset:-4
Orientation:forward strand
Alignment:----TCAGGAGG---
CCACACAGCAGGAGA
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G A T C G C T G A A C T G A C T G A C G T A C G T A C G T
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

PB0207.1_Zic3_2/Jaspar

Match Rank:9
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----TCAGGAGG---
GAGCACAGCAGGACA
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G A T C G C T G A A C T G A C T G A C G T A C G T A C G T
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:10
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----TCAGGAGG
TGAGTCAGCA--
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G A T C G C T G A A C T G A C T G
G A C T T A C G C G T A T A C G G A C T G T A C G C T A C T A G A G T C C T G A A C G T A C G T