Information for 12-TAGTAT (Motif 64)

A C G T C G T A A C T G A C G T C G T A A C G T
Reverse Opposite:
C G T A A C G T C G T A A G T C A C G T C G T A
p-value:1e-9
log p-value:-2.090e+01
Information Content per bp:1.530
Number of Target Sequences with motif35.0
Percentage of Target Sequences with motif4.82%
Number of Background Sequences with motif5.0
Percentage of Background Sequences with motif1.76%
Average Position of motif in Targets104.1 +/- 51.4bp
Average Position of motif in Background41.9 +/- 27.4bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0181.1_Spdef_2/Jaspar

Match Rank:1
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----TAGTAT------
CTACTAGGATGTNNTN
 A C G T A C G T A C G T A C G T A C G T C G T A A C T G A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A G T C G C A T C G T A T G A C C G A T T C G A T A C G C A T G C G T A G A C T C T A G G A C T C G A T T C G A G C A T G A T C

PB0106.1_Arid5a_2/Jaspar

Match Rank:2
Score:0.65
Offset:-5
Orientation:reverse strand
Alignment:-----TAGTAT------
TNNTTTCGTATTNNANN
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A G C T T C G A G C A T G A C T G A C T A T G C A T C G A C G T T G C A A C G T C G A T A C T G G C A T C T G A G A C T T A C G

ZKSCAN1/MA1585.1/Jaspar

Match Rank:3
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-TAGTAT---
ATAGTAGGTG
 A C G T A C G T C G T A A C T G A C G T C G T A A C G T A C G T A C G T A C G T
T C G A A G C T T G C A C T A G A C G T G T C A A T C G C A T G A G C T T A C G

Arid5a/MA0602.1/Jaspar

Match Rank:4
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-TAGTAT-------
CTAATATTGCTAAA
 A C G T A C G T C G T A A C T G A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A

PB0002.1_Arid5a_1/Jaspar

Match Rank:5
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-TAGTAT-------
CTAATATTGCTAAA
 A C G T A C G T C G T A A C T G A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:6
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---TAGTAT------
CCATTGTATGCAAAT
 A C G T A C G T A C G T A C G T C G T A A C T G A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A G T C G A T C G C T A C G A T A C G T T A C G G C A T C T G A G A C T A C T G A G T C G C T A C T G A T C G A C A G T

PB0036.1_Irf6_1/Jaspar

Match Rank:7
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----TAGTAT-------
NNNTTGGTTTCGNTNNN
 A C G T A C G T A C G T A C G T A C G T C G T A A C T G A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G C T A G T A C G C A T A C G T A G C T C T A G A C T G A C G T G C A T A C G T A G T C C T A G C T G A G A C T G A T C G C T A C A T G

DMRT3/MA0610.1/Jaspar

Match Rank:8
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-TAGTAT----
AATGTATCAAT
 A C G T A C G T C G T A A C T G A C G T C G T A A C G T A C G T A C G T A C G T A C G T
G T C A C G T A C G A T A C T G A C G T C G T A C G A T A G T C G T C A C G T A A C G T

HMBOX1/MA0895.1/Jaspar

Match Rank:9
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--TAGTAT--
ACTAGTTAAC
 A C G T A C G T A C G T C G T A A C T G A C G T C G T A A C G T A C G T A C G T
T G C A A G T C C G A T C T G A A T C G C G A T G C A T C G T A G T C A T A G C

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:10
Score:0.56
Offset:-5
Orientation:reverse strand
Alignment:-----TAGTAT-
BTVATTWGCATA
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G A C G T C G T A A C G T A C G T
A G T C C A G T T G C A G T C A A C G T A G C T C G A T T C A G G T A C C G T A A C G T C T G A