Information for 24-CTAGCC (Motif 69)

A G T C A C G T C G T A A C T G A G T C A G T C
Reverse Opposite:
A C T G A C T G A G T C A C G T C G T A A C T G
p-value:1e-3
log p-value:-7.773e+00
Information Content per bp:1.530
Number of Target Sequences with motif34.0
Percentage of Target Sequences with motif4.68%
Number of Background Sequences with motif7.2
Percentage of Background Sequences with motif2.56%
Average Position of motif in Targets94.6 +/- 57.8bp
Average Position of motif in Background56.2 +/- 40.3bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad4/MA1153.1/Jaspar

Match Rank:1
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-CTAGCC-
TCTAGACA
 A C G T A G T C A C G T C G T A A C T G A G T C A G T C A C G T
A C G T A G T C A G C T C G T A A C T G C G T A A G T C C T G A

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:2
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---CTAGCC--
NNACTTGCCTT
 A C G T A C G T A C G T A G T C A C G T C G T A A C T G A G T C A G T C A C G T A C G T
T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:3
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:CTAGCC--
BCAGACWA
 A G T C A C G T C G T A A C T G A G T C A G T C A C G T A C G T
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A

POL010.1_DCE_S_III/Jaspar

Match Rank:4
Score:0.68
Offset:1
Orientation:forward strand
Alignment:CTAGCC
-CAGCC
 A G T C A C G T C G T A A C T G A G T C A G T C
A C G T T A G C C G T A A C T G A G T C A T G C

SMAD5/MA1557.1/Jaspar

Match Rank:5
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---CTAGCC-
TGTCTAGACA
 A C G T A C G T A C G T A G T C A C G T C G T A A C T G A G T C A G T C A C G T
G A C T T C A G C A G T T G A C A C G T T G C A T A C G G T C A G A T C G C T A

SMAD3/MA0795.1/Jaspar

Match Rank:6
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---CTAGCC-
CGTCTAGACA
 A C G T A C G T A C G T A G T C A C G T C G T A A C T G A G T C A G T C A C G T
G A T C C T A G C G A T T A G C A G C T T G C A A T C G G T C A G A T C G C T A

POL006.1_BREu/Jaspar

Match Rank:7
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CTAGCC
AGCGCGCC
 A C G T A C G T A G T C A C G T C G T A A C T G A G T C A G T C
T G C A T A C G T A G C T C A G T G A C A C T G A G T C A G T C

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:8
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CTAGCC--
CTAGGCCT
 A G T C A C G T C G T A A C T G A G T C A G T C A C G T A C G T
T A G C A G C T C T G A A C T G A T C G A T G C G T A C A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:9
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CTAGCC-----
ACTAGCCAATCA
 A C G T A G T C A C G T C G T A A C T G A G T C A G T C A C G T A C G T A C G T A C G T A C G T
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

ZNF682/MA1599.1/Jaspar

Match Rank:10
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----CTAGCC-----
CGGGCCAAGCCCCTAT
 A C G T A C G T A C G T A C G T A C G T A G T C A C G T C G T A A C T G A G T C A G T C A C G T A C G T A C G T A C G T A C G T
A G T C T C A G C T A G T C A G T A G C A G T C T G C A T G C A A C T G A G T C A G T C A T G C G T A C C G A T T C G A A G C T