Information for 1-CTSWSSCWGCAG (Motif 2)

A G T C A C G T A T C G C G A T A T G C T A G C A G T C C G T A A T C G A G T C C G T A A T C G
Reverse Opposite:
A T G C A C G T A C T G A T G C C G A T A C T G A T C G A T C G C G T A A T G C G T C A A C T G
p-value:1e-22
log p-value:-5.076e+01
Information Content per bp:1.770
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif13.33%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.28%
Average Position of motif in Targets88.5 +/- 57.2bp
Average Position of motif in Background104.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.21
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zic1::Zic2/MA1628.1/Jaspar

Match Rank:1
Score:0.70
Offset:4
Orientation:forward strand
Alignment:CTSWSSCWGCAG---
----CACAGCAGGGG
 A G T C A C G T A T C G C G A T A T G C T A G C A G T C C G T A A T C G A G T C C G T A A T C G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T A G C T C G A A G T C T G C A T A C G A G T C T C G A A T C G A C T G T A C G T C A G

MAFA/MA1521.1/Jaspar

Match Rank:2
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---CTSWSSCWGCAG
TTGCTGAGTCAGCAA
 A C G T A C G T A C G T A G T C A C G T A T C G C G A T A T G C T A G C A G T C C G T A A T C G A G T C C G T A A T C G
C G A T G A C T T C A G G T A C G A C T C A T G G T C A A T C G C A G T G T A C C G T A C A T G A G T C C T G A G C T A

Zic2/MA1629.1/Jaspar

Match Rank:3
Score:0.67
Offset:2
Orientation:forward strand
Alignment:CTSWSSCWGCAG----
--CTCACAGCAGGGGG
 A G T C A C G T A T C G C G A T A T G C T A G C A G T C C G T A A T C G A G T C C G T A A T C G A C G T A C G T A C G T A C G T
A C G T A C G T T G A C C A G T T G A C G C T A T A G C G T C A T A C G A G T C C T G A C A T G A T C G C T A G T C A G T C A G

MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer

Match Rank:4
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----CTSWSSCWGCAG----
WNTGCTGASTCAGCANWTTY
 A C G T A C G T A C G T A C G T A G T C A C G T A T C G C G A T A T G C T A G C A G T C C G T A A T C G A G T C C G T A A T C G A C G T A C G T A C G T A C G T
C G T A G A C T C G A T A T C G G T A C G C A T C A T G C G T A T A C G G C A T G T A C C G T A C A T G A T G C G C T A C T A G G C A T G C A T G C A T G A C T

MAF/MA1520.1/Jaspar

Match Rank:5
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---CTSWSSCWGCAG
NTGCTGACTCAGCAN
 A C G T A C G T A C G T A G T C A C G T A T C G C G A T A T G C T A G C A G T C C G T A A T C G A G T C C G T A A T C G
C G A T G A C T T C A G G T A C G C A T C A T G G C T A A T G C C G A T G T A C C G T A C A T G A G T C C T G A G C A T

PB0205.1_Zic1_2/Jaspar

Match Rank:6
Score:0.66
Offset:1
Orientation:forward strand
Alignment:CTSWSSCWGCAG----
-CCACACAGCAGGAGA
 A G T C A C G T A T C G C G A T A T G C T A G C A G T C C G T A A T C G A G T C C G T A A T C G A C G T A C G T A C G T A C G T
A C G T A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.66
Offset:4
Orientation:forward strand
Alignment:CTSWSSCWGCAG----
----CACAGCAGGGGG
 A G T C A C G T A T C G C G A T A T G C T A G C A G T C C G T A A T C G A G T C C G T A A T C G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

PB0206.1_Zic2_2/Jaspar

Match Rank:8
Score:0.66
Offset:1
Orientation:forward strand
Alignment:CTSWSSCWGCAG----
-CCACACAGCAGGAGA
 A G T C A C G T A T C G C G A T A T G C T A G C A G T C C G T A A T C G A G T C C G T A A T C G A C G T A C G T A C G T A C G T
A C G T G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer

Match Rank:9
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CTSWSSCWGCAG
GCTGASTCAGCA-
 A C G T A G T C A C G T A T C G C G A T A T G C T A G C A G T C C G T A A T C G A G T C C G T A A T C G
T C A G T A G C G A C T C A T G C T G A A T C G G C A T G T A C C G T A A C T G T A G C T G C A A C G T

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:10
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:CTSWSSCWGCAG
-TGAGTCAGCA-
 A G T C A C G T A T C G C G A T A T G C T A G C A G T C C G T A A T C G A G T C C G T A A T C G
A C G T G A C T T A C G C G T A T A C G G A C T G T A C G C T A C T A G A G T C C T G A A C G T