species:   Drmel
pid:       MI0005872
parent:    dme-mir-1011
paralog:   
locus:     NT_033777.3:20853305-20853358
matures:   ['UUAUUGGUUCAAAUCGCUCGCAG', 'GUGAGUUUUUGAGCCAGGAAUA']
srr:       SRR11906542
genome:    /Users/jax/+Genomes/Animal_genomes/Drmel.GCF_000001215.4_Release_6_plus_ISO1_MT_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Drmel.SRR11906542.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Drmel.SRR11906542.cram NT_033777.3:20853305-20853358

3 out of bounds
49 alignments
49 proper strand
48 stranded perfect matches

**********************       *************************
GUGAGUUUUUGAGCCAGGAAUAUAGUUCUUAUUAUUGGUUCAAAUCGCUCGCAG
((((((.((((((((((.((((.......)))).))))))))))..))))))..
-------------------------------UUAUUGGUUCAAAUCGCUCGCAG l=23 a=36 c
GUGAGUUUUUGAGCCAGGAAUA-------------------------------- l=22 a=0 c*
-------------------------------UUAUUGGUUCAAAUCGCUCGCAG l=23 a=36 ma
GUGAGUUUUUGAGCCAGGAAUA-------------------------------- l=22 a=0 ma*

--------------------------------UAUUGGUUCAAAUCGCUCGCAG l=22 a=2 
-------------------------------UUAUUGGUUCAAAUCGCUCGC-- l=21 a=3 
-------------------------------UUAUUGGUUCAAAUCGCUCGCA- l=22 a=7 
-------------------------------UUAUUGGUUCAAAUCGCUCGCAG l=23 a=36 (c,ma)
-------------------------------UUAUUGGUUCAAAUCGCUCGCAa l=23 a=1 

mb-01011
ax-1011111
ku-01
ss-111111111110
fn-111
