species:   Rhsol
pid:       PID1789
parent:    novel-milR-64
paralog:   
locus:     KB317775.1:32278-32341
matures:   ['AAUUGGACUGGAACAAGGAGGCC', 'CCUCCAAGUAGGUCACAGAGUUCU']
srr:       SRR10747099
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.GCA_000334115.1_Rhisol_AG1IA_1.0_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Meng2021-lx.SRR10747099.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Meng2021-lx.SRR10747099.cram KB317775.1:32278-32341

3 out of bounds
3 alignments
3 proper strand
2 stranded perfect matches

  ***************************       **************************  
CACCUCCAAGUAGGUCACAGAGUUCUGCAACCUUAUUGCGGAAUUGGACUGGAACAAGGAGGCC
..(((((..((.((((.((..(((((((((.....)))))))))))))))...))..)))))..
-----------------------------------------AAUUGGACUGGAACAAGGAGGCC l=23 a=0 c
--CCUCCAAGUAGGUCACAGAGUUCU-------------------------------------- l=24 a=0 c*
--------------------------------------CGGAAUUGGACUGGAACAAGGAGG-- l=24 a=1 ma
----UCCAAGUAGGUCACAGAGUUCUGCA----------------------------------- l=25 a=0 ma*

--------------------------------------CGGAAUUGGACUGGAACAAGGAGG-- l=24 a=1 (ma)
-----------------------------------UgGCGGAAUUGGACUGGAACAAGG----- l=24 a=1 
--------------UCACAGAGUUCUGCAACCUUAUU--------------------------- l=23 a=1 

mb-01011
ax-1001011
ku-01
ss-110111101100
fn-011
