species:   Cocin
pid:       PID1277
parent:    cci-milR-22
paralog:   
locus:     scaffold_260:438-501
matures:   ['UCGGUGUUGGUAAAAGUCG', 'CAAUUUACAACACCGGUG']
srr:       SRR9972092
genome:    /Users/jax/+Genomes/Fungal_genomes/Cocin.Copci_AmutBmut1_AssemblyScaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lau2020-gn.SRR9972092.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lau2020-gn.SRR9972092.cram scaffold_260:438-501

0 out of bounds
4 alignments
3 proper strand
3 stranded perfect matches

********************                        ********************
GUCGGUGUUGGUAAAAGUCGGGUGUCGGGUACAUUCCCCUUAUCCCCAAUUUACAACACCGGUG
.(((((((((.((((....(((((..(((......)))..)))))....)))))))))))))..
-UCGGUGUUGGUAAAAGUCG-------------------------------------------- l=19 a=2 c
----------------------------------------------CAAUUUACAACACCGGUG l=18 a=0 c*
-UCGGUGUUGGUAAAAGUCG-------------------------------------------- l=19 a=2 ma
----------------------------------------------CAAUUUACAACACCGGUG l=18 a=0 ma*

-UCGGUGUUGGUAAAAGUCG-------------------------------------------- l=19 a=2 (c,ma)
-----UGUUGGUAAAAGUCGGGU----------------------------------------- l=18 a=1 

mb-01011
ax-1011001
ku-01
ss-101010101100
fn-001
