species:   Cocin
pid:       PID1277
parent:    cci-milR-22
paralog:   
locus:     scaffold_260:438-501
matures:   ['UCGGUGUUGGUAAAAGUCG', 'CAAUUUACAACACCGGUG']
srr:       SRR9972087
genome:    /Users/jax/+Genomes/Fungal_genomes/Cocin.Copci_AmutBmut1_AssemblyScaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lau2020-gn.SRR9972087.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lau2020-gn.SRR9972087.cram scaffold_260:438-501

1 out of bounds
1 alignments
1 proper strand
1 stranded perfect matches

**********************                    **********************
GUCGGUGUUGGUAAAAGUCGGGUGUCGGGUACAUUCCCCUUAUCCCCAAUUUACAACACCGGUG
.(((((((((.((((....(((((..(((......)))..)))))....)))))))))))))..
-UCGGUGUUGGUAAAAGUCG-------------------------------------------- l=19 a=0 c
----------------------------------------------CAAUUUACAACACCGGUG l=18 a=0 c*
-UCGGUGUUGGUAAAAGUCGGG------------------------------------------ l=21 a=1 ma
--------------------------------------------CCCAAUUUACAACACCGGUG l=20 a=0 ma*

-UCGGUGUUGGUAAAAGUCGGG------------------------------------------ l=21 a=1 (ma)

mb-01011
ax-1011111
ku-01
ss-110111101110
fn-011
