species:   Scscl
pid:       PID1757
parent:    Ssc-milR-233
paralog:   
locus:     NW_001820831.1:1140846-1140896
matures:   ['UGGAGCGGCGGAAGUUUGUUGA', 'GGCAGAGGUCUCUUGUGGCUGAG']
srr:       SRR12527894
genome:    /Users/jax/+Genomes/Fungal_genomes/Scscl.GCF_000146945.2_ASM14694v2.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527894.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527894.cram NW_001820831.1:1140846-1140896

1 out of bounds
4 alignments
3 proper strand
3 stranded perfect matches

**********************   ************************* 
UGGAGCGGCGGAAGUUUGUUGAUGGUCGGCAGAGGUCUCUUGUGGCUGAGC
...(((.(((((..((((((((...))))))))..)))...)).)))....
UGGAGCGGCGGAAGUUUGUUGA----------------------------- l=22 a=2 c
---------------------------GGCAGAGGUCUCUUGUGGCUGAG- l=23 a=0 c*
UGGAGCGGCGGAAGUUUGUUGA----------------------------- l=22 a=2 ma
---------------------------GGCAGAGGUCUCUUGUGGCUGAG- l=23 a=0 ma*

----------------------UGGUCGGCAGAGGUCUCUUGU-------- l=21 a=1 
UGGAGCGGCGGAAGUUUGUUGA----------------------------- l=22 a=2 (c,ma)

mb-01011
ax-1001011
ku-01
ss-111110101100
fn-101
