species:   Scscl
pid:       PID1749
parent:    Ssc-milR-225
paralog:   
locus:     NW_001820823.1:720860-720906
matures:   ['UGGUGAAGACUCGGAGCGUUCU', 'GACGCUGCGUAUUCACAAUG']
srr:       SRR12527898
genome:    /Users/jax/+Genomes/Fungal_genomes/Scscl.GCF_000146945.2_ASM14694v2.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527898.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527898.cram NW_001820823.1:720860-720906

6 out of bounds
9 alignments
7 proper strand
6 stranded perfect matches

***********************  **********************
UUGGUGAAGACUCGGAGCGUUCUUGAGGACGCUGCGUAUUCACAAUG
...(((((....((.(((((((....))))))).))..)))))....
-UGGUGAAGACUCGGAGCGUUCU------------------------ l=22 a=1 c
---------------------------GACGCUGCGUAUUCACAAUG l=20 a=0 c*
-UGGUGAAGACUCGGAGCGUUCU------------------------ l=22 a=1 ma
---------------------------GACGCUGCGUAUUCACAAUG l=20 a=0 ma*

-UGGUGAAGACUCGGAGCGUUCU------------------------ l=22 a=1 (c,ma)
-UGGUGAAGACUCGGAGCGUUCc------------------------ l=22 a=1 
--GGUGAAGACUCGGAGCGUUCUUGA--------------------- l=24 a=1 
-------AGACUCGGAGCGUUCUUGAGGA------------------ l=22 a=1 
-------------------UUCUUGAGGACGCUGCGUAU-------- l=20 a=1 
----------------------UUGAGGACGCUGCGUAUUCACA--- l=22 a=1 
-----------------------UGAGGACGCUGCGUAUUCACAAU- l=23 a=1 

mb-01011
ax-1001011
ku-01
ss-110110101100
fn-001
