species:   Cocin
pid:       PID1289
parent:    cci-milR-34
paralog:   
locus:     scaffold_701:1455-1503
matures:   ['UGGUCGAGUUACGCUUGAUU', 'UCAGGCAGAACUCGCCCAUU']
srr:       SRR9972089
genome:    /Users/jax/+Genomes/Fungal_genomes/Cocin.Copci_AmutBmut1_AssemblyScaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lau2020-gn.SRR9972089.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lau2020-gn.SRR9972089.cram scaffold_701:1455-1503

1 out of bounds
3 alignments
3 proper strand
3 stranded perfect matches

********************      ********************** 
UGGUCGAGUUACGCUUGAUUUAAGCAAUUCAGGCAGAACUCGCCCAUUU
(((.((((((..((((((..........))))))..)))))).)))...
UGGUCGAGUUACGCUUGAUU----------------------------- l=20 a=1 c
----------------------------UCAGGCAGAACUCGCCCAUU- l=20 a=0 c*
UGGUCGAGUUACGCUUGAUU----------------------------- l=20 a=1 ma
----------------------------UCAGGCAGAACUCGCCCAUU- l=20 a=0 ma*

UGGUCGAGUUACGCUUGAUU----------------------------- l=20 a=1 (c,ma)
UGGUCGAGUUACGCUUGAUUUAAGC------------------------ l=25 a=1 
UGGUCGAGUUACGCUUGAUUUAAGCA----------------------- l=26 a=1 

mb-01011
ax-1011011
ku-01
ss-100111101100
fn-111
