species:   Cocin
pid:       PID1276
parent:    cci-milR-21
paralog:   b
locus:     scaffold_254:29213-29253
matures:   ['UCGGAGGUUCACAUUGAGG', 'UCAAUGUGAACCUCCGAUC']
srr:       SRR9972089
genome:    /Users/jax/+Genomes/Fungal_genomes/Cocin.Copci_AmutBmut1_AssemblyScaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lau2020-gn.SRR9972089.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lau2020-gn.SRR9972089.cram scaffold_254:29213-29253

0 out of bounds
4 alignments
2 proper strand
2 stranded perfect matches

**************************************** 
UCGGAGGUUCACAUUGAGGCCUCAAUGUGAACCUCCGAUCC
(((((((((((((((((....)))))))))))))))))...
UCGGAGGUUCACAUUGAGG---------------------- l=19 a=2 c
---------------------UCAAUGUGAACCUCCGAUC- l=19 a=0 c*
UCGGAGGUUCACAUUGAGG---------------------- l=19 a=2 ma
---------------------UCAAUGUGAACCUCCGAUC- l=19 a=0 ma*

UCGGAGGUUCACAUUGAGG---------------------- l=19 a=2 (c,ma)

mb-01011
ax-1011101
ku-01
ss-101010011110
fn-101
