species:   Clros
pid:       PID2266
parent:    cro-mir-58
paralog:   
locus:     CADEHS020000471.2:112434-112487
matures:   ['UCAGGCGGACUGGACUGCC', 'UGGCCAAGUGCGUCUGAUGAG']
srr:       ERR5950930
genome:    /Users/jax/+Genomes/Fungal_genomes/Clros.GCA_902827195.2_C_rosea_IK726_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5950930.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5950930.cram CADEHS020000471.2:112434-112487

1 out of bounds
4 alignments
3 proper strand
2 stranded perfect matches

*******************           *********************** 
UCAGGCGGACUGGACUGCCUUCAUAAGCAAGCUGGCCAAGUGCGUCUGAUGAGG
(((((((.(((((.(((.((((....).))).))))).))).))))))).....
UCAGGCGGACUGGACUGCC----------------------------------- l=19 a=2 c
--------------------------------UGGCCAAGUGCGUCUGAUGAG- l=21 a=0 c*
UCAGGCGGACUGGACUGCC----------------------------------- l=19 a=2 ma
--------------------------------UGGCCAAGUGCGUCUGAUGAG- l=21 a=0 ma*

UCAGGCGGACUGGACUGCC----------------------------------- l=19 a=2 (c,ma)
UCAGGCGGACUGGuCUGCC----------------------------------- l=19 a=1 

mb-00011
ax-1011001
ku-01
ss-101010111000
fn-001
