species:   Cocin
pid:       PID1289
parent:    cci-milR-34
paralog:   
locus:     scaffold_701:1455-1503
matures:   ['UGGUCGAGUUACGCUUGAUU', 'UCAGGCAGAACUCGCCCAUU']
srr:       SRR9972093
genome:    /Users/jax/+Genomes/Fungal_genomes/Cocin.Copci_AmutBmut1_AssemblyScaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lau2020-gn.SRR9972093.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lau2020-gn.SRR9972093.cram scaffold_701:1455-1503

3 out of bounds
45 alignments
45 proper strand
44 stranded perfect matches

********************      ********************** 
UGGUCGAGUUACGCUUGAUUUAAGCAAUUCAGGCAGAACUCGCCCAUUU
(((.((((((..((((((..........))))))..)))))).)))...
UGGUCGAGUUACGCUUGAUU----------------------------- l=20 a=40 c
----------------------------UCAGGCAGAACUCGCCCAUU- l=20 a=0 c*
UGGUCGAGUUACGCUUGAUU----------------------------- l=20 a=40 ma
----------------------------UCAGGCAGAACUCGCCCAUU- l=20 a=0 ma*

UGGUCGAGUUACGCUUGAU------------------------------ l=19 a=2 
UGGUCGAGUUACGCUUGAUU----------------------------- l=20 a=40 (c,ma)
UGGUCGAGUUACcCUUGAUU----------------------------- l=20 a=1 
UGGUCGAGUUACGCUUGAUUU---------------------------- l=21 a=2 

mb-01011
ax-1011111
ku-01
ss-111111101110
fn-111
