species:   Scscl
pid:       PID1602
parent:    Ssc-milR-78
paralog:   
locus:     NW_001820820.1:882354-882402
matures:   ['UAUGAUCUUGGGUUGGUAUAAU', 'UAUUGGGCUUAGGGAUGAUU']
srr:       SRR12527898
genome:    /Users/jax/+Genomes/Fungal_genomes/Scscl.GCF_000146945.2_ASM14694v2.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527898.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527898.cram NW_001820820.1:882354-882402

5 out of bounds
2 alignments
2 proper strand
0 stranded perfect matches

***********************    **********************
GUAUGAUCUUGGGUUGGUAUAAUCGGGCUUAUUGGGCUUAGGGAUGAUU
.......((((((((.(.((((......))))).)))))))).......
-UAUGAUCUUGGGUUGGUAUAAU-------------------------- l=22 a=0 c
-----------------------------UAUUGGGCUUAGGGAUGAUU l=20 a=0 c*
-UAUGAUCUUGGGUUGGUAUAAU-------------------------- l=22 a=0 ma
-----------------------------UAUUGGGCUUAGGGAUGAUU l=20 a=0 ma*


No alignments to locus

mb-01010
ax-1001011
ku-01
ss-110111101100
fn-011
