species:   Scscl
pid:       PID1533
parent:    Ssc-milR-9
paralog:   
locus:     NW_001820801.1:1973-2047
matures:   ['UAGCCGGGCUAUUUAGCAGGUU', 'UCCCUCUAAGAAGCCAGCGACCAGC']
srr:       SRR12527895
genome:    /Users/jax/+Genomes/Fungal_genomes/Scscl.GCF_000146945.2_ASM14694v2.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527895.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527895.cram NW_001820801.1:1973-2047

1174 out of bounds
285 alignments
2 proper strand
0 stranded perfect matches

          ***************************    ************************          
UUGAGCCGAUAGUCCCUCUAAGAAGCCAGCGACCAGCCAAAGCUAGCCGGGCUAUUUAGCAGGUUAAGGUCUCGU
..(((((..(((.((..(((((.((((..((.(.(((....))).).)))))).)))))..))))).)).)))..
-------------------------------------------UAGCCGGGCUAUUUAGCAGGUU---------- l=22 a=0 c
------------UCCCUCUAAGAAGCCAGCGACCAGC-------------------------------------- l=25 a=0 c*
-------------------------------------------UAGCCGGGCUAUUUAGCAGGUU---------- l=22 a=0 ma
------------UCCCUCUAAGAAGCCAGCGACCAGC-------------------------------------- l=25 a=0 ma*


No alignments to locus

mb-01011
ax-1001011
ku-01
ss-100111001100
fn-001
