species:   Cocin
pid:       PID1280
parent:    cci-milR-25
paralog:   
locus:     scaffold_33:109333-109394
matures:   ['UGGCUUGGGGAGGAGAGC', 'CUCGCUGAACCAGGUCAUG']
srr:       SRR9972086
genome:    /Users/jax/+Genomes/Fungal_genomes/Cocin.Copci_AmutBmut1_AssemblyScaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lau2020-gn.SRR9972086.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lau2020-gn.SRR9972086.cram scaffold_33:109333-109394

0 out of bounds
2 alignments
1 proper strand
1 stranded perfect matches

*******************                    ********************** 
UGGCUUGGGGAGGAGAGCUGUCUGGCUUUGGCUUGAAGACGCCUCGCUGAACCAGGUCAUGC
((((((((..(((((.((.(((((((....)))...))))))))).))...))))))))...
UGGCUUGGGGAGGAGAGC-------------------------------------------- l=18 a=0 c
------------------------------------------CUCGCUGAACCAGGUCAUG- l=19 a=0 c*
UGGCUUGGGGAGGAGAGCU------------------------------------------- l=19 a=1 ma
-----------------------------------------CCUCGCUGAACCAGGUCAUG- l=20 a=0 ma*

UGGCUUGGGGAGGAGAGCU------------------------------------------- l=19 a=1 (ma)

mb-01011
ax-1011001
ku-01
ss-100010011100
fn-001
