species:   Cocin
pid:       PID1276
parent:    cci-milR-21
paralog:   b
locus:     scaffold_254:29213-29253
matures:   ['UCGGAGGUUCACAUUGAGG', 'UCAAUGUGAACCUCCGAUC']
srr:       SRR9972092
genome:    /Users/jax/+Genomes/Fungal_genomes/Cocin.Copci_AmutBmut1_AssemblyScaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lau2020-gn.SRR9972092.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lau2020-gn.SRR9972092.cram scaffold_254:29213-29253

0 out of bounds
31 alignments
18 proper strand
18 stranded perfect matches

**************************************** 
UCGGAGGUUCACAUUGAGGCCUCAAUGUGAACCUCCGAUCC
(((((((((((((((((....)))))))))))))))))...
UCGGAGGUUCACAUUGAGG---------------------- l=19 a=15 c
---------------------UCAAUGUGAACCUCCGAUC- l=19 a=0 c*
UCGGAGGUUCACAUUGAGG---------------------- l=19 a=15 ma
---------------------UCAAUGUGAACCUCCGAUC- l=19 a=0 ma*

--GGAGGUUCACAUUGAGG---------------------- l=17 a=1 
UCGGAGGUUCACAUUGAG----------------------- l=18 a=1 
UCGGAGGUUCACAUUGAGG---------------------- l=19 a=15 (c,ma)
UCGGAGGUUCACAUUGAGGC--------------------- l=20 a=1 

mb-01011
ax-1011101
ku-01
ss-101010111110
fn-101
