species:   Pechr
pid:       PID0248
parent:    milR-34
paralog:   
locus:     CM002801.1:1325461-1325507
matures:   ['UUUCCCAUCUCGAUCACCGGA', 'GUCAGAUCAGAUCCCGGCAGAUU']
srr:       SRR1705826
genome:    /Users/jax/+Genomes/Fungal_genomes/Pechr.GCA_000710275.1_ASM71027v1_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Dahlmann2015-ew.SRR1705826.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Dahlmann2015-ew.SRR1705826.cram CM002801.1:1325461-1325507

27 out of bounds
44 alignments
27 proper strand
27 stranded perfect matches

*********************** ***********************
GUCAGAUCAGAUCCCGGCAGAUUAACUUUCCCAUCUCGAUCACCGGA
....((((((((...((.(((.....))))).)))).))))......
--------------------------UUUCCCAUCUCGAUCACCGGA l=21 a=26 c
GUCAGAUCAGAUCCCGGCAGAUU------------------------ l=23 a=0 c*
--------------------------UUUCCCAUCUCGAUCACCGGA l=21 a=26 ma
GUCAGAUCAGAUCCCGGCAGAUU------------------------ l=23 a=0 ma*

-----------------------------CCCAUCUCGAUCACCGGA l=18 a=1 
--------------------------UUUCCCAUCUCGAUCACCGGA l=21 a=26 (c,ma)

mb-01010
ax-1001011
ku-01
ss-111110101110
fn-101
