species:   Clros
pid:       PID1844
parent:    cro-mir-13
paralog:   
locus:     CADEHS020000533.2:499194-499231
matures:   ['UUCUUCCUUGAUGCGUCCC', 'GACACCAAGGAUUCUCA']
srr:       ERR5960111
genome:    /Users/jax/+Genomes/Fungal_genomes/Clros.GCA_902827195.2_C_rosea_IK726_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5960111.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5960111.cram CADEHS020000533.2:499194-499231

151 out of bounds
471 alignments
471 proper strand
465 stranded perfect matches

**************************************
UGACACCAAGGAUUCUCAUUUCUUCCUUGAUGCGUCCC
.(((.(((((((...........))))))..).)))..
-------------------UUCUUCCUUGAUGCGUCCC l=19 a=380 c
-GACACCAAGGAUUCUCA-------------------- l=17 a=0 c*
-------------------UUCUUCCUUGAUGCGUCCC l=19 a=380 ma
-GACACCAAGGAUUCUCA-------------------- l=17 a=0 ma*

UGACACCAAGGAUUCUaA-------------------- l=18 a=1 
UGACACCAAGGAUUCUCAUUU----------------- l=21 a=1 
UGACACCAAGGAUUCUCAUUUC---------------- l=22 a=1 
----------GAUUCUCAUUUCUUCCUUGAUGC----- l=23 a=2 
----------GAUUCUCAUUUCUUCCUUGAUGCGa--- l=25 a=2 
----------GAUUCUCAUUUCUUCCUUGAUGCGU--- l=25 a=3 
------------UUCUCAUUUCUUCCUUGAUG------ l=20 a=13 
------------UUCUCAUUUCUUCCUUGAUGC----- l=21 a=5 
------------UUCUCAUUUCUUCCUUGAUGCGU--- l=23 a=1 
------------------UUUCUUCCUUGAUGCGUCC- l=19 a=1 
-------------------UUCUUCCUUGAUGCGU--- l=16 a=1 
-------------------UUCUUCCUUGAUGCGUC-- l=17 a=8 
-------------------UUCUUCCUUGAUGCGUCC- l=18 a=48 
-------------------UUCUUCCUUGAUGCGUCCC l=19 a=380 (c,ma)
-------------------UUCUUCCUUGAUGCGUCCa l=19 a=1 
-------------------UUCUUCCUaGAUGCGUCCC l=19 a=1 
-------------------UUCUaCCUUGAUGCGUCCC l=19 a=1 
--------------------UCUUCCUUGAUGCGUCCC l=18 a=1 

mb-01010
ax-1001101
ku-11
ss-101011101110
fn-111
