species:   Cocin
pid:       PID1272
parent:    cci-milR-18
paralog:   
locus:     scaffold_204:40328-40394
matures:   ['UAUAGUAGUUGAGGAAGGC', 'GUUCAUCAACCGUGCGAUGU']
srr:       SRR9972094
genome:    /Users/jax/+Genomes/Fungal_genomes/Cocin.Copci_AmutBmut1_AssemblyScaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lau2020-gn.SRR9972094.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lau2020-gn.SRR9972094.cram scaffold_204:40328-40394

0 out of bounds
2 alignments
1 proper strand
1 stranded perfect matches

******************                           ********************* 
UAUAGUAGUUGAGGAAGGCGUCGGGAUCGCAAAGGACGAUCUCCGCGUUCAUCAACCGUGCGAUGUC
....((((((((.(((.(((..((((((((....).)))))))))).))).)))))..)))......
UAUAGUAGUUGAGGAAGGC------------------------------------------------ l=19 a=0 c
----------------------------------------------GUUCAUCAACCGUGCGAUGU- l=20 a=0 c*
UAUAGUAGUUGAGGAAGG------------------------------------------------- l=18 a=1 ma
-----------------------------------------------UUCAUCAACCGUGCGAUGU- l=19 a=0 ma*

UAUAGUAGUUGAGGAAGG------------------------------------------------- l=18 a=1 (ma)

mb-01010
ax-1001001
ku-01
ss-100010001100
fn-001
