species:   Rhsol
pid:       PID0587
parent:    Rhi-milR-128
paralog:   
locus:     KB317701.1:1-53
matures:   ['UGAGGAGAAGUGUGGAUCAAUG', 'UUUGUACAGUGCCCUCAGG']
srr:       SRR1994872
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994872.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994872.cram KB317701.1:1-53

9 out of bounds
33 alignments
29 proper strand
14 stranded perfect matches

 *************************    ********************** 
CGCUGAGGAGAAGUGUGGAUCAAUGCCCAGGCGUUUGUACAGUGCCCUCAGGA
..((((((.(.(.((((.(..(((((....)))))).)))).).)))))))..
---UGAGGAGAAGUGUGGAUCAAUG---------------------------- l=22 a=4 c
---------------------------------UUUGUACAGUGCCCUCAGG- l=19 a=0 c*
---UGAGGAGAAGUGUGGAUCAAUGC--------------------------- l=23 a=8 ma
--------------------------------GUUUGUACAGUGCCCUCAGG- l=20 a=0 ma*

--CUGAGGAGAAGUGUGGAUCAAUGCC-------------------------- l=25 a=1 
---UGAGGAGAAGUGUGGAUCAAUG---------------------------- l=22 a=4 (c)
---UGAGGAGAAGUGUGGgUCAAUG---------------------------- l=22 a=1 
---UGAGGAGAAGUGUGGAUCAAUGC--------------------------- l=23 a=8 (ma)
---UGAGGAGAAGUGUGGgUCAAUGC--------------------------- l=23 a=8 
---UGAGGAGAAGUGUGGAUCAAUaC--------------------------- l=23 a=1 
---UGAGGAGAAGUGUGGAUCAAUGCC-------------------------- l=24 a=1 
---UGAGGAGAAGUGUGGAUCAAUGCa-------------------------- l=24 a=4 
-------------UGUGGAUCAAUGCCaAGGCGUUUG---------------- l=24 a=1 

mb-01011
ax-1011011
ku-01
ss-111111101100
fn-111
