species:   Cocin
pid:       PID1292
parent:    cci-milR-37
paralog:   
locus:     scaffold_8:234110-234155
matures:   ['UGAGGAUAUUCCUGCCGGU', 'GCGCCGGAGUAUCUUCAGC']
srr:       SRR9972092
genome:    /Users/jax/+Genomes/Fungal_genomes/Cocin.Copci_AmutBmut1_AssemblyScaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lau2020-gn.SRR9972092.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lau2020-gn.SRR9972092.cram scaffold_8:234110-234155

0 out of bounds
21 alignments
21 proper strand
21 stranded perfect matches

*******************     ********************* 
UGAGGAUAUUCCUGCCGGUCCUAGACGCGCCGGAGUAUCUUCAGCU
((((((((((((.((..(((...)))..)).))))))))))))...
UGAGGAUAUUCCUGCCGGU--------------------------- l=19 a=12 c
--------------------------GCGCCGGAGUAUCUUCAGC- l=19 a=0 c*
UGAGGAUAUUCCUGCCGGU--------------------------- l=19 a=12 ma
--------------------------GCGCCGGAGUAUCUUCAGC- l=19 a=0 ma*

-GAGGAUAUUCCUGCCGGUCC------------------------- l=20 a=1 
UGAGGAUAUUCCUGCCGG---------------------------- l=18 a=1 
UGAGGAUAUUCCUGCCGGU--------------------------- l=19 a=12 (c,ma)
UGAGGAUAUUCCUGCCGGUC-------------------------- l=20 a=1 
UGAGGAUAUUCCUGCCGGUCC------------------------- l=21 a=2 
UGAGGAUAUUCCUGCCGGUCCU------------------------ l=22 a=4 

mb-01011
ax-1011001
ku-01
ss-101011111110
fn-111
