species:   Cocin
pid:       PID1292
parent:    cci-milR-37
paralog:   
locus:     scaffold_8:234110-234155
matures:   ['UGAGGAUAUUCCUGCCGGU', 'GCGCCGGAGUAUCUUCAGC']
srr:       SRR9972094
genome:    /Users/jax/+Genomes/Fungal_genomes/Cocin.Copci_AmutBmut1_AssemblyScaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lau2020-gn.SRR9972094.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lau2020-gn.SRR9972094.cram scaffold_8:234110-234155

0 out of bounds
70 alignments
70 proper strand
69 stranded perfect matches

*******************     ********************* 
UGAGGAUAUUCCUGCCGGUCCUAGACGCGCCGGAGUAUCUUCAGCU
((((((((((((.((..(((...)))..)).))))))))))))...
UGAGGAUAUUCCUGCCGGU--------------------------- l=19 a=36 c
--------------------------GCGCCGGAGUAUCUUCAGC- l=19 a=0 c*
UGAGGAUAUUCCUGCCGGU--------------------------- l=19 a=36 ma
--------------------------GCGCCGGAGUAUCUUCAGC- l=19 a=0 ma*

---------------------------CGCCGGAGUAUCUUCA--- l=16 a=1 
UGAGGAUAUUCCUGCCG----------------------------- l=17 a=2 
UGAGGAUAUUCCUGCCGG---------------------------- l=18 a=12 
UGAGGAUAUUCCUGCCGGU--------------------------- l=19 a=36 (c,ma)
UGAGGAUAUUCCUGCCGGUC-------------------------- l=20 a=6 
UGAGGAUAUUCCUGCCGGUCC------------------------- l=21 a=6 
UGAGGAUAUUCCUGCCGGUCa------------------------- l=21 a=1 
UGAGGAUAUUCCUGCCGGUCCU------------------------ l=22 a=6 

mb-01111
ax-1011101
ku-01
ss-101011111110
fn-111
