species:   Scscl
pid:       PID1703
parent:    Ssc-milR-179
paralog:   
locus:     NC_035155.1:9650-9692
matures:   ['UGAGGAGGUAGGAGGGGAG', 'CCCCCCCCGCCUCCUCAAC']
srr:       SRR12527894
genome:    /Users/jax/+Genomes/Fungal_genomes/Scscl.GCF_000146945.2_ASM14694v2.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527894.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527894.cram NC_035155.1:9650-9692

7 out of bounds
10 alignments
6 proper strand
4 stranded perfect matches

********************  *********************
CCCCCCCCCGCCUCCUCAACCAGUUGAGGAGGUAGGAGGGGAG
.((((.((.((((((((((....)))))))))).)).))))..
------------------------UGAGGAGGUAGGAGGGGAG l=19 a=0 c
-CCCCCCCCGCCUCCUCAAC----------------------- l=19 a=0 c*
---------------UCAACCAGUUGAGGAGGUAGGAGG---- l=24 a=1 ma
-CCCCCCCCGCCUCCUCAAC----------------------- l=19 a=0 ma*

---------------UCAACCAGUUGAGGAGGUAGGAGG---- l=24 a=1 (ma)
----------------CAACCAGUUGAGGAGGUAGGAGGG--- l=24 a=1 
--------------------CAGUUGAGGAGGUAGGAG----- l=18 a=1 
--------------------CAGUUGAGGAGGUAGGAGc---- l=19 a=1 
--------------------CAGUUGAGGAGGUAGGAGGG--- l=20 a=1 
------------------------UGAGGAGGUAGGAGGGGAc l=19 a=1 

mb-00010
ax-1011011
ku-01
ss-100110111100
fn-101
