Permalink
Cannot retrieve contributors at this time
Name already in use
A tag already exists with the provided branch name. Many Git commands accept both tag and branch names, so creating this branch may cause unexpected behavior. Are you sure you want to create this branch?
TyphoidGenomicsConsortiumWG1/genotypes/SuppTable4_country_summary.csv
Go to fileThis commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
112 lines (112 sloc)
6.17 KB
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Region | Country_Origin | Total genomes | Travel (%) | Representative cases from 2010 | Travel (%) amongst representative cases from 2010 | |
|---|---|---|---|---|---|---|
| Australia and New Zealand | Australia | 12 | 0 (0%) | 12 | 0 (0%) | |
| Australia and New Zealand | New Zealand | 45 | 0 (0%) | 45 | 0 (0%) | |
| Caribbean | Dominican Republic | 6 | 6 (100%) | 6 | 6 (100%) | |
| Caribbean | Haiti | 12 | 12 (100%) | 12 | 12 (100%) | |
| Caribbean | Jamaica | 1 | 1 (100%) | 1 | 1 (100%) | |
| Caribbean | Turks and Caicos Islands | 1 | 1 (100%) | 1 | 1 (100%) | |
| Central America | El Salvador | 19 | 19 (100%) | 19 | 19 (100%) | |
| Central America | Guatemala | 22 | 22 (100%) | 22 | 22 (100%) | |
| Central America | Mexico | 61 | 60 (98.4%) | 58 | 58 (100%) | |
| Central America | Panama | 1 | 1 (100%) | 1 | 1 (100%) | |
| Eastern Africa | Burundi | 2 | 2 (100%) | 2 | 2 (100%) | |
| Eastern Africa | Comoros | 3 | 3 (100%) | 0 | 0 (NaN%) | |
| Eastern Africa | Ethiopia | 4 | 2 (50%) | 3 | 1 (33.3%) | |
| Eastern Africa | Kenya | 254 | 7 (2.8%) | 149 | 6 (4%) | |
| Eastern Africa | Madagascar | 12 | 3 (25%) | 8 | 0 (0%) | |
| Eastern Africa | Malawi | 569 | 0 (0%) | 558 | 0 (0%) | |
| Eastern Africa | Mayotte | 3 | 0 (0%) | 3 | 0 (0%) | |
| Eastern Africa | Mozambique | 1 | 1 (100%) | 1 | 1 (100%) | |
| Eastern Africa | Rwanda | 52 | 1 (1.9%) | 27 | 1 (3.7%) | |
| Eastern Africa | Tanzania | 35 | 9 (25.7%) | 18 | 7 (38.9%) | |
| Eastern Africa | Uganda | 37 | 7 (18.9%) | 36 | 6 (16.7%) | |
| Eastern Africa | Zambia | 24 | 2 (8.3%) | 0 | 0 (NaN%) | |
| Eastern Africa | Zimbabwe | 110 | 25 (22.7%) | 25 | 25 (100%) | |
| Eastern Asia | China | 5 | 5 (100%) | 3 | 3 (100%) | |
| Eastern Asia | Japan | 4 | 1 (25%) | 0 | 0 (NaN%) | |
| Eastern Asia | Mongolia | 1 | 1 (100%) | 0 | 0 (NaN%) | |
| Eastern Asia | South Korea | 2 | 2 (100%) | 0 | 0 (NaN%) | |
| Eastern Europe | Bulgaria | 1 | 1 (100%) | 1 | 1 (100%) | |
| Eastern Europe | Russia | 2 | 1 (50%) | 0 | 0 (NaN%) | |
| Melanesia | Fiji | 144 | 102 (70.8%) | 32 | 25 (78.1%) | |
| Melanesia | Papua New Guinea | 86 | 45 (52.3%) | 5 | 5 (100%) | |
| Melanesia | Vanuatu | 2 | 2 (100%) | 0 | 0 (NaN%) | |
| Micronesia | Marshall Islands | 4 | 1 (25%) | 1 | 1 (100%) | |
| Middle Africa | Angola | 5 | 5 (100%) | 2 | 2 (100%) | |
| Middle Africa | Cameroon | 27 | 10 (37%) | 0 | 0 (NaN%) | |
| Middle Africa | Central African Republic | 3 | 1 (33.3%) | 0 | 0 (NaN%) | |
| Middle Africa | Chad | 2 | 2 (100%) | 2 | 2 (100%) | |
| Middle Africa | Democratic Republic of Congo | 1 | 0 (0%) | 0 | 0 (NaN%) | |
| Middle Africa | Democratic Republic of the Congo | 20 | 4 (20%) | 17 | 2 (11.8%) | |
| Middle Africa | Gabon | 1 | 1 (100%) | 0 | 0 (NaN%) | |
| Northern Africa | Algeria | 8 | 8 (100%) | 0 | 0 (NaN%) | |
| Northern Africa | Egypt | 7 | 7 (100%) | 1 | 1 (100%) | |
| Northern Africa | Morocco | 13 | 12 (92.3%) | 2 | 2 (100%) | |
| Northern Africa | Sudan | 9 | 9 (100%) | 2 | 2 (100%) | |
| Northern Africa | Tunisia | 4 | 3 (75%) | 1 | 1 (100%) | |
| Northern America | USA | 167 | 2 (1.2%) | 140 | 2 (1.4%) | |
| Northern Europe | Ireland | 1 | 1 (100%) | 0 | 0 (NaN%) | |
| Northern Europe | United Kingdom | 108 | 0 (0%) | 105 | 0 (0%) | |
| Polynesia | Samoa | 319 | 87 (27.3%) | 259 | 42 (16.2%) | |
| Polynesia | Tonga | 5 | 5 (100%) | 3 | 3 (100%) | |
| South America | Argentina | 11 | 0 (0%) | 0 | 0 (NaN%) | |
| South America | Brazil | 1 | 1 (100%) | 1 | 1 (100%) | |
| South America | Chile | 259 | 49 (18.9%) | 97 | 0 (0%) | |
| South America | Colombia | 76 | 0 (0%) | 0 | 0 (NaN%) | |
| South America | French Guiana | 5 | 2 (40%) | 3 | 0 (0%) | |
| South America | Peru | 14 | 14 (100%) | 3 | 3 (100%) | |
| South America | Suriname | 1 | 1 (100%) | 1 | 1 (100%) | |
| South-eastern Asia | Cambodia | 279 | 6 (2.2%) | 221 | 5 (2.3%) | |
| South-eastern Asia | Indonesia | 145 | 39 (26.9%) | 65 | 27 (41.5%) | |
| South-eastern Asia | Laos | 139 | 2 (1.4%) | 27 | 1 (3.7%) | |
| South-eastern Asia | Malaysia | 35 | 35 (100%) | 3 | 3 (100%) | |
| South-eastern Asia | Myanmar | 52 | 13 (25%) | 49 | 10 (20.4%) | |
| South-eastern Asia | Philippines | 209 | 19 (9.1%) | 206 | 16 (7.8%) | |
| South-eastern Asia | Singapore | 5 | 2 (40%) | 4 | 1 (25%) | |
| South-eastern Asia | Thailand | 51 | 7 (13.7%) | 5 | 5 (100%) | |
| South-eastern Asia | Timor-Leste | 1 | 1 (100%) | 1 | 1 (100%) | |
| South-eastern Asia | Viet Nam | 224 | 6 (2.7%) | 3 | 3 (100%) | |
| Southern Africa | Namibia | 1 | 1 (100%) | 1 | 1 (100%) | |
| Southern Africa | South Africa | 316 | 5 (1.6%) | 285 | 1 (0.4%) | |
| Southern Asia | Afghanistan | 6 | 6 (100%) | 5 | 5 (100%) | |
| Southern Asia | Bangladesh | 2268 | 264 (11.6%) | 1591 | 216 (13.6%) | |
| Southern Asia | India | 2708 | 1241 (45.8%) | 2267 | 1038 (45.8%) | |
| Southern Asia | Nepal | 1436 | 39 (2.7%) | 1275 | 21 (1.6%) | |
| Southern Asia | Pakistan | 1810 | 783 (43.3%) | 1484 | 597 (40.2%) | |
| Southern Asia | Sri Lanka | 6 | 6 (100%) | 1 | 1 (100%) | |
| Southern Europe | Greece | 2 | 2 (100%) | 2 | 2 (100%) | |
| Southern Europe | Italy | 1 | 1 (100%) | 1 | 1 (100%) | |
| Southern Europe | Malta | 3 | 3 (100%) | 0 | 0 (NaN%) | |
| Southern Europe | Portugal | 2 | 2 (100%) | 1 | 1 (100%) | |
| Southern Europe | Spain | 2 | 2 (100%) | 2 | 2 (100%) | |
| Western Africa | Benin | 4 | 4 (100%) | 0 | 0 (NaN%) | |
| Western Africa | Burkina Faso | 17 | 3 (17.6%) | 14 | 0 (0%) | |
| Western Africa | Cape Verde | 1 | 1 (100%) | 0 | 0 (NaN%) | |
| Western Africa | Cote d'Ivoire | 4 | 4 (100%) | 0 | 0 (NaN%) | |
| Western Africa | Gambia | 25 | 1 (4%) | 20 | 0 (0%) | |
| Western Africa | Ghana | 109 | 8 (7.3%) | 68 | 5 (7.4%) | |
| Western Africa | Guinea | 2 | 2 (100%) | 0 | 0 (NaN%) | |
| Western Africa | Guinea-Bissau | 3 | 0 (0%) | 3 | 0 (0%) | |
| Western Africa | Liberia | 1 | 1 (100%) | 0 | 0 (NaN%) | |
| Western Africa | Mali | 5 | 5 (100%) | 1 | 1 (100%) | |
| Western Africa | Mauritania | 2 | 2 (100%) | 0 | 0 (NaN%) | |
| Western Africa | Niger | 4 | 4 (100%) | 1 | 1 (100%) | |
| Western Africa | Nigeria | 192 | 42 (21.9%) | 150 | 25 (16.7%) | |
| Western Africa | Senegal | 10 | 2 (20%) | 8 | 0 (0%) | |
| Western Africa | Sierra Leone | 2 | 2 (100%) | 2 | 2 (100%) | |
| Western Africa | Togo | 3 | 3 (100%) | 0 | 0 (NaN%) | |
| Western Asia | Armenia | 1 | 1 (100%) | 0 | 0 (NaN%) | |
| Western Asia | Iraq | 19 | 19 (100%) | 8 | 8 (100%) | |
| Western Asia | Lebanon | 8 | 8 (100%) | 4 | 4 (100%) | |
| Western Asia | Qatar | 1 | 1 (100%) | 1 | 1 (100%) | |
| Western Asia | Saudi Arabia | 4 | 4 (100%) | 3 | 3 (100%) | |
| Western Asia | State of Palestine | 1 | 1 (100%) | 0 | 0 (NaN%) | |
| Western Asia | Syria | 4 | 4 (100%) | 1 | 1 (100%) | |
| Western Asia | Turkey | 5 | 5 (100%) | 0 | 0 (NaN%) | |
| Western Asia | United Arab Emirates | 4 | 4 (100%) | 4 | 4 (100%) | |
| Western Europe | France | 4 | 0 (0%) | 0 | 0 (NaN%) | |
| Western Europe | Germany | 1 | 1 (100%) | 1 | 1 (100%) | |
| Western Europe | Netherlands | 1 | 1 (100%) | 1 | 1 (100%) | |
| Western Europe | Switzerland | 1 | 1 (100%) | 1 | 1 (100%) | |
| Unknown | Not Provided | 225 | 193 (85.8%) | 0 | 0 (NaN%) | |
| Total | - | 12968 | 3381 (26.1%) | 9478 | 2284 (24.1%) |