<?xml version="1.0" encoding="UTF-8"?><!DOCTYPE article PUBLIC "-//NLM//DTD JATS (Z39.96) Journal Archiving and Interchange DTD with MathML3 v1.3 20210610//EN"  "JATS-archivearticle1-3-mathml3.dtd"><article xmlns:ali="http://www.niso.org/schemas/ali/1.0/" xmlns:xlink="http://www.w3.org/1999/xlink" article-type="research-article" dtd-version="1.3"><front><journal-meta><journal-id journal-id-type="nlm-ta">elife</journal-id><journal-id journal-id-type="publisher-id">eLife</journal-id><journal-title-group><journal-title>eLife</journal-title></journal-title-group><issn publication-format="electronic" pub-type="epub">2050-084X</issn><publisher><publisher-name>eLife Sciences Publications, Ltd</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="publisher-id">89638</article-id><article-id pub-id-type="doi">10.7554/eLife.89638</article-id><article-id pub-id-type="doi" specific-use="version">10.7554/eLife.89638.3</article-id><article-version article-version-type="publication-state">version of record</article-version><article-categories><subj-group subj-group-type="display-channel"><subject>Research Article</subject></subj-group><subj-group subj-group-type="heading"><subject>Cancer Biology</subject></subj-group></article-categories><title-group><article-title>Improving PD-1 blockade plus chemotherapy for complete remission of lung cancer by nanoPDLIM2</article-title></title-group><contrib-group><contrib contrib-type="author"><name><surname>Sun</surname><given-names>Fan</given-names></name><xref ref-type="aff" rid="aff1">1</xref><xref ref-type="fn" rid="con1"/><xref ref-type="fn" rid="conf1"/></contrib><contrib contrib-type="author"><name><surname>Yan</surname><given-names>Pengrong</given-names></name><xref ref-type="aff" rid="aff1">1</xref><xref ref-type="fn" rid="con2"/><xref ref-type="fn" rid="conf1"/></contrib><contrib contrib-type="author"><name><surname>Xiao</surname><given-names>Yadong</given-names></name><xref ref-type="aff" rid="aff1">1</xref><xref ref-type="aff" rid="aff2">2</xref><xref ref-type="aff" rid="aff3">3</xref><xref ref-type="aff" rid="aff4">4</xref><xref ref-type="fn" rid="con3"/><xref ref-type="fn" rid="conf1"/></contrib><contrib contrib-type="author"><name><surname>Zhang</surname><given-names>Hongqiao</given-names></name><contrib-id authenticated="true" contrib-id-type="orcid">https://orcid.org/0000-0002-0526-5636</contrib-id><xref ref-type="aff" rid="aff3">3</xref><xref ref-type="fn" rid="con4"/><xref ref-type="fn" rid="conf1"/></contrib><contrib contrib-type="author"><name><surname>Shapiro</surname><given-names>Steven D</given-names></name><xref ref-type="aff" rid="aff2">2</xref><xref ref-type="aff" rid="aff4">4</xref><xref ref-type="fn" rid="con5"/><xref ref-type="fn" rid="conf1"/></contrib><contrib contrib-type="author" corresp="yes"><name><surname>Xiao</surname><given-names>Gutian</given-names></name><email>Gutian.Xiao@med.usc.edu</email><xref ref-type="aff" rid="aff1">1</xref><xref ref-type="aff" rid="aff3">3</xref><xref ref-type="other" rid="fund1"/><xref ref-type="other" rid="fund2"/><xref ref-type="other" rid="fund3"/><xref ref-type="other" rid="fund4"/><xref ref-type="fn" rid="con6"/><xref ref-type="fn" rid="conf1"/></contrib><contrib contrib-type="author" corresp="yes"><name><surname>Qu</surname><given-names>Zhaoxia</given-names></name><contrib-id authenticated="true" contrib-id-type="orcid">https://orcid.org/0000-0002-2769-9814</contrib-id><email>Zhaoxia.Qu@med.usc.edu</email><xref ref-type="aff" rid="aff1">1</xref><xref ref-type="aff" rid="aff3">3</xref><xref ref-type="other" rid="fund1"/><xref ref-type="other" rid="fund3"/><xref ref-type="other" rid="fund5"/><xref ref-type="other" rid="fund6"/><xref ref-type="other" rid="fund7"/><xref ref-type="fn" rid="con7"/><xref ref-type="fn" rid="conf1"/></contrib><aff id="aff1"><label>1</label><institution-wrap><institution-id institution-id-type="ror">https://ror.org/03bw34a45</institution-id><institution>UPMC Hillman Cancer Center, Department of Microbiology and Molecular Genetics, University of Pittsburgh School of Medicine</institution></institution-wrap><addr-line><named-content content-type="city">Pittsburgh</named-content></addr-line><country>United States</country></aff><aff id="aff2"><label>2</label><institution-wrap><institution-id institution-id-type="ror">https://ror.org/01an3r305</institution-id><institution>Division of Pulmonary, Allergy, and Critical Care Medicine, Department of Medicine, University of Pittsburgh School of Medicine</institution></institution-wrap><addr-line><named-content content-type="city">Pittsburgh</named-content></addr-line><country>United States</country></aff><aff id="aff3"><label>3</label><institution-wrap><institution-id institution-id-type="ror">https://ror.org/03taz7m60</institution-id><institution>Norris Comprehensive Cancer Center, Hastings Center for Pulmonary Research, Department of Molecular Microbiology and Immunology, University of Southern California Keck School of Medicine</institution></institution-wrap><addr-line><named-content content-type="city">Los Angeles</named-content></addr-line><country>United States</country></aff><aff id="aff4"><label>4</label><institution-wrap><institution-id institution-id-type="ror">https://ror.org/03taz7m60</institution-id><institution>Department of Medicine, University of Southern California Keck School of Medicine</institution></institution-wrap><addr-line><named-content content-type="city">Los Angeles</named-content></addr-line><country>United States</country></aff></contrib-group><contrib-group content-type="section"><contrib contrib-type="editor"><name><surname>Rothlin</surname><given-names>Carla V</given-names></name><role>Reviewing Editor</role><aff><institution-wrap><institution-id institution-id-type="ror">https://ror.org/03v76x132</institution-id><institution>Yale University</institution></institution-wrap><country>United States</country></aff></contrib><contrib contrib-type="senior_editor"><name><surname>Rothlin</surname><given-names>Carla V</given-names></name><role>Senior Editor</role><aff><institution-wrap><institution-id institution-id-type="ror">https://ror.org/03v76x132</institution-id><institution>Yale University</institution></institution-wrap><country>United States</country></aff></contrib></contrib-group><pub-date publication-format="electronic" date-type="publication"><day>24</day><month>12</month><year>2024</year></pub-date><volume>12</volume><elocation-id>RP89638</elocation-id><history><date date-type="sent-for-review" iso-8601-date="2023-06-25"><day>25</day><month>06</month><year>2023</year></date></history><pub-history><event><event-desc>This manuscript was published as a preprint.</event-desc><date date-type="preprint" iso-8601-date="2023-07-25"><day>25</day><month>07</month><year>2023</year></date><self-uri content-type="preprint" xlink:href="https://doi.org/10.1101/2023.07.23.550248"/></event><event><event-desc>This manuscript was published as a reviewed preprint.</event-desc><date date-type="reviewed-preprint" iso-8601-date="2023-08-24"><day>24</day><month>08</month><year>2023</year></date><self-uri content-type="reviewed-preprint" xlink:href="https://doi.org/10.7554/eLife.89638.1"/></event><event><event-desc>The reviewed preprint was revised.</event-desc><date date-type="reviewed-preprint" iso-8601-date="2024-02-13"><day>13</day><month>02</month><year>2024</year></date><self-uri content-type="reviewed-preprint" xlink:href="https://doi.org/10.7554/eLife.89638.2"/></event></pub-history><permissions><copyright-statement>© 2023, Sun et al</copyright-statement><copyright-year>2023</copyright-year><copyright-holder>Sun et al</copyright-holder><ali:free_to_read/><license xlink:href="http://creativecommons.org/licenses/by/4.0/"><ali:license_ref>http://creativecommons.org/licenses/by/4.0/</ali:license_ref><license-p>This article is distributed under the terms of the <ext-link ext-link-type="uri" xlink:href="http://creativecommons.org/licenses/by/4.0/">Creative Commons Attribution License</ext-link>, which permits unrestricted use and redistribution provided that the original author and source are credited.</license-p></license></permissions><self-uri content-type="pdf" xlink:href="elife-89638-v1.pdf"/><self-uri content-type="figures-pdf" xlink:href="elife-89638-figures-v1.pdf"/><abstract><p>Immune checkpoint inhibitors (ICIs) and their combination with other therapies such as chemotherapy, fail in most cancer patients. We previously identified the PDZ-LIM domain-containing protein 2 (PDLIM2) as a bona fide tumor suppressor that is repressed in lung cancer to drive cancer and its chemo and immunotherapy resistance, suggesting a new target for lung cancer therapy improvement. In this study, human clinical samples and data were used to investigate <italic>PDLIM2</italic> genetic and epigenetic changes in lung cancer. Using an endogenous mouse lung cancer model faithfully recapitulating refractory human lung cancer and a clinically feasible nano-delivery system, we investigated the therapeutic efficacy, action mechanism, and safety of systemically administrated PDLIM2 expression plasmids encapsulated in nanoparticles (nanoPDLIM2) and its combination with PD-1 antibody and chemotherapeutic drugs. Our analysis indicate that PDLIM2 repression in human lung cancer involves both genetic deletion and epigenetic alteration. NanoPDLIM2 showed low toxicity, high tumor specificity, antitumor activity, and greatly improved the efficacy of anti-PD-1 and chemotherapeutic drugs, with complete tumor remission in most mice and substantial tumor reduction in the remaining mice by their triple combination. Mechanistically, nanoPDLIM2 increased major histocompatibility complex class I (MHC-I) expression, suppressed multi-drug resistance 1 (MDR1) induction and survival genes and other tumor-related genes expression in tumor cells, and enhanced lymphocyte tumor infiltration, turning the cold tumors hot and sensitive to ICIs and rendering them vulnerable to chemotherapeutic drugs and activated tumor-infiltrating lymphocytes (TILs) including those unleashed by ICIs. These studies established a clinically applicable PDLIM2-based combination therapy with great efficacy for lung cancer and possibly other cold cancers.</p></abstract><abstract abstract-type="plain-language-summary"><title>eLife digest</title><p>Lung cancer remains the leading cause of all cancer-related deaths. Treatment options are limited because drug-based therapies including chemotherapy and immune checkpoint inhibitors (or ICIs, for short) are ineffective in most patients.</p><p>PDLIM2 is a protein that normally prevents tumors from forming by regulating the activities of other genes. However, lung cancer cells generally have lower levels of this protein than healthy cells and this appears to be linked to the ability of the cancer cells to become resistant to chemotherapy and ICIs. Cells make proteins using templates encoded in our DNA. It remains unclear how PDLIM2 production is repressed in lung cancer: it is possible that cancer cells may acquire genetic alterations that affect PDLIM2 production, or there may be other changes to the structure of the DNA known as epigenetic changes.</p><p>Sun et al. investigated the production of PDLIM2 in samples from human lung cancer patients. The experiments found that in over 90% of the patients, the levels of PDLIM2 were lower than in cells from healthy individuals. This was due to genetic alterations or epigenetic changes, or a combination of the two.</p><p>Further experiments in a mouse model of lung cancer demonstrated that it is possible to use nanotechnology to deliver PDLIM2 to cancer cells for effective cancer therapy with low toxicity. Combining this nanotechnology (known as nanoPDLIM2) with both ICIs and chemotherapy drugs was able to completely eradicate all tumors in most of the mice.</p><p>The findings provide a firm basis for further studies of the potential of nanoPDLIM2 as a safe and effective therapy for human lung cancer. PDLIM2 production is also repressed in numerous other types of cancer, so it is possible that nanoPDLIM2 may have broader uses in cancer treatment.</p></abstract><kwd-group kwd-group-type="author-keywords"><kwd>PDLIM2</kwd><kwd>immune checkpoint</kwd><kwd>PD-1</kwd><kwd>lung cancer</kwd><kwd>nanotherapy</kwd><kwd>combination therapy</kwd></kwd-group><kwd-group kwd-group-type="research-organism"><title>Research organism</title><kwd>Human</kwd><kwd>Mouse</kwd></kwd-group><funding-group><award-group id="fund1"><funding-source><institution-wrap><institution-id institution-id-type="FundRef">http://dx.doi.org/10.13039/100000002</institution-id><institution>National Institutes of Health</institution></institution-wrap></funding-source><award-id>R01 GM144890</award-id><principal-award-recipient><name><surname>Xiao</surname><given-names>Gutian</given-names></name><name><surname>Qu</surname><given-names>Zhaoxia</given-names></name></principal-award-recipient></award-group><award-group id="fund2"><funding-source><institution-wrap><institution-id institution-id-type="FundRef">http://dx.doi.org/10.13039/100000002</institution-id><institution>National Institutes of Health</institution></institution-wrap></funding-source><award-id>R01 CA172090</award-id><principal-award-recipient><name><surname>Xiao</surname><given-names>Gutian</given-names></name></principal-award-recipient></award-group><award-group id="fund3"><funding-source><institution-wrap><institution-id institution-id-type="FundRef">http://dx.doi.org/10.13039/100000002</institution-id><institution>National Institutes of Health</institution></institution-wrap></funding-source><award-id>R01 CA258614</award-id><principal-award-recipient><name><surname>Xiao</surname><given-names>Gutian</given-names></name><name><surname>Qu</surname><given-names>Zhaoxia</given-names></name></principal-award-recipient></award-group><award-group id="fund4"><funding-source><institution-wrap><institution-id institution-id-type="FundRef">http://dx.doi.org/10.13039/100000002</institution-id><institution>National Institutes of Health</institution></institution-wrap></funding-source><award-id>R21 CA259706</award-id><principal-award-recipient><name><surname>Xiao</surname><given-names>Gutian</given-names></name></principal-award-recipient></award-group><award-group id="fund5"><funding-source><institution-wrap><institution-id institution-id-type="FundRef">http://dx.doi.org/10.13039/100000048</institution-id><institution>American Cancer Society</institution></institution-wrap></funding-source><award-id>Research Scholar Grant RSG-19-166-01-TBG</award-id><principal-award-recipient><name><surname>Qu</surname><given-names>Zhaoxia</given-names></name></principal-award-recipient></award-group><award-group id="fund6"><funding-source><institution-wrap><institution-id institution-id-type="FundRef">http://dx.doi.org/10.13039/100002590</institution-id><institution>American Lung Association</institution></institution-wrap></funding-source><award-id>Lung Cancer Discovery Award 821321</award-id><principal-award-recipient><name><surname>Qu</surname><given-names>Zhaoxia</given-names></name></principal-award-recipient></award-group><award-group id="fund7"><funding-source><institution-wrap><institution-id institution-id-type="FundRef">http://dx.doi.org/10.13039/100005188</institution-id><institution>Tobacco-Related Disease Research Program</institution></institution-wrap></funding-source><award-id>Research Award T33IR6461</award-id><principal-award-recipient><name><surname>Qu</surname><given-names>Zhaoxia</given-names></name></principal-award-recipient></award-group><funding-statement>The funders had no role in study design, data collection and interpretation, or the decision to submit the work for publication.</funding-statement></funding-group><custom-meta-group><custom-meta specific-use="meta-only"><meta-name>Author impact statement</meta-name><meta-value>The novel PDLIM2 nanomedicine enhances chemoimmunotherapy for complete cure of lung cancer.</meta-value></custom-meta><custom-meta specific-use="meta-only"><meta-name>publishing-route</meta-name><meta-value>prc</meta-value></custom-meta></custom-meta-group></article-meta></front><body><sec id="s1" sec-type="intro"><title>Introduction</title><p>Lung cancer is the leading cause of cancer-related deaths in both men and women with a 5-year survival rate of only 22% (<xref ref-type="bibr" rid="bib25">Siegel et al., 2022</xref>). Although these outcomes may be improved by immune checkpoint blockade therapy involving the disruption of the binding of programmed cell death 1 (PD-1, also known as CD279) on tumor-infiltrating lymphocytes (TILs) to programmed death receptor ligand 1 (PD-L1, also known as B7-H1 or CD274) on tumor and tumor-associated cells, most lung cancer patients still fail the therapy, with a response rate of only about 20% (<xref ref-type="bibr" rid="bib5">Doroshow et al., 2019</xref>). In general, this revolutionary immunotherapy works better against ‘hot’ tumors, which have abundant TILs, strong immunogenicity and sufficient PD-L1 expression. Unfortunately, most tumors are ‘cold’, with low T-cell infiltration, weak immunogenicity and minimal PD-L1 expression, and show weak response to immune checkpoint inhibitors (ICIs; <xref ref-type="bibr" rid="bib47">Zou et al., 2016</xref>; <xref ref-type="bibr" rid="bib44">Zappasodi et al., 2018</xref>).</p><p>Cold lung tumors without targetable oncogenic drivers are treated with chemotherapy as the standard approach (<xref ref-type="bibr" rid="bib1">Baxevanos and Mountzios, 2018</xref>). However, the response rate to this conventional cancer therapy is also low and resistance often occurs after an initial response, with an overall survival (OS) of about 12–17 months. Given its roles in inducing TILs and immunogenicity, in particular PD-L1 expression, to turn cold tumors hot, chemotherapy can be an ideal candidate for combination with PD-1/PD-L1 blockade to improve therapeutic efficacy (<xref ref-type="bibr" rid="bib29">Sun et al., 2019</xref>). Indeed, combination treatment with ICIs and chemotherapeutic drugs shows synergy and better efficacy in both preclinical animal models and clinical trials of lung cancer and other cancers (<xref ref-type="bibr" rid="bib29">Sun et al., 2019</xref>; <xref ref-type="bibr" rid="bib7">Garassino et al., 2020</xref>; <xref ref-type="bibr" rid="bib13">Leonetti et al., 2019</xref>). However, even with the combination of ICIs and chemotherapy, tumors in animals do not remit completely and the objective response rate (ORR) of lung cancer patients only reaches 33–49.7%, with a median progression-free survival (PFS) of just 5.1–9 months and a median OS of 13–22 months (<xref ref-type="bibr" rid="bib7">Garassino et al., 2020</xref>; <xref ref-type="bibr" rid="bib13">Leonetti et al., 2019</xref>). Thus, further improvement over the chemo-immunotherapy is direly needed.</p><p>Our recent human and mouse studies have shown that most lung tumors not only have low TILs and decreased PD-L1, but also down-regulate major histocompatibility complex class I (MHC-I), evading recognition and attack by CD8<sup>+</sup> T cells, including those unleashed by ICIs and/or recruited by chemotherapy (<xref ref-type="bibr" rid="bib29">Sun et al., 2019</xref>; <xref ref-type="bibr" rid="bib30">Sun et al., 2020</xref>; <xref ref-type="bibr" rid="bib8">Guo and Qu, 2021</xref>). Following our previous cell line studies (<xref ref-type="bibr" rid="bib20">Qu et al., 2010a</xref>; <xref ref-type="bibr" rid="bib21">Qu et al., 2010b</xref>; <xref ref-type="bibr" rid="bib27">Sun et al., 2015</xref>; <xref ref-type="bibr" rid="bib41">Yan et al., 2009b</xref>; <xref ref-type="bibr" rid="bib36">Vanoirbeek et al., 2014</xref>; <xref ref-type="bibr" rid="bib40">Yan et al., 2009a</xref>; <xref ref-type="bibr" rid="bib6">Fu et al., 2010</xref>), we have established the PDZ-LIM domain-containing protein PDLIM2, also known as SLIM or mystique (<xref ref-type="bibr" rid="bib35">Torrado et al., 2004</xref>; <xref ref-type="bibr" rid="bib33">Tanaka et al., 2005</xref>; <xref ref-type="bibr" rid="bib16">Loughran et al., 2005</xref>), as a bona fide tumor suppressor and its repression as a causative driver of lung cancer and resistance to ICIs and chemotherapeutic agents (<xref ref-type="bibr" rid="bib29">Sun et al., 2019</xref>). While <italic>PDLIM2</italic> is epigenetically repressed in human lung cancer, associating with therapeutic resistance and poor prognosis, its global or lung epithelial-specific deletion in mice leads to lung cancer development, chemoresistance, and complete resistance to anti-PD-1 and epigenetic drugs. One most important function of PDLIM2 is to promote the ubiquitination and proteasomal degradation of nuclear signal transducer and activator of transcription 3 (STAT3) and nuclear factor-κB (NF-κB) RelA (also known as p65), two master transcription factors that function as proto-oncogenes in lung and many other cancers (<xref ref-type="bibr" rid="bib29">Sun et al., 2019</xref>; <xref ref-type="bibr" rid="bib8">Guo and Qu, 2021</xref>; <xref ref-type="bibr" rid="bib20">Qu et al., 2010a</xref>; <xref ref-type="bibr" rid="bib21">Qu et al., 2010b</xref>; <xref ref-type="bibr" rid="bib27">Sun et al., 2015</xref>; <xref ref-type="bibr" rid="bib34">Tanaka et al., 2007</xref>; <xref ref-type="bibr" rid="bib22">Qu et al., 2012</xref>; <xref ref-type="bibr" rid="bib45">Zhou et al., 2015</xref>; <xref ref-type="bibr" rid="bib23">Qu et al., 2015</xref>; <xref ref-type="bibr" rid="bib26">Steinbrecher et al., 2008</xref>; <xref ref-type="bibr" rid="bib43">Yu et al., 2009</xref>; <xref ref-type="bibr" rid="bib39">Xiao and Fu, 2011</xref>). PDLIM2 repression in tumor cells thus results in the persistent activation of STAT3 and RelA, leading to MHC-I downregulation and high expression of tumor growth-related genes (<xref ref-type="bibr" rid="bib29">Sun et al., 2019</xref>). It also leads to strong induction of multi-drug resistance 1 (MDR1) for acquired chemo-resistance, as chemotherapy further enhances RelA activation for MDR1 transcription in PDLIM2 deficient tumor cells (<xref ref-type="bibr" rid="bib29">Sun et al., 2019</xref>).</p><p>In this study, we examined whether and how PDLIM2 can be targeted to treat lung cancer in a faithful mouse model of human lung cancer. In particular, we tested whether systemic administration of nanoparticle-encapsulated PDLIM2-expression plasmids (nanoPDLIM2) could enhance the efficacy of anti-PD-1 and/or chemotherapeutic drugs. We also examined whether PDLIM2 repression in human lung cancer involves genetic deletion and its relationship with epigenetic silencing. These studies indicate that besides epigenetic repression, loss of heterozygosity (LOH) contributes to <italic>PDLIM2</italic> downregulation in about 58% of human lung tumors, and that <italic>Pdlim2</italic> heterozygous deletion (<italic>Pdlim2</italic><sup>+/-</sup>) mice develop spontaneous tumors in lung and other organs. Notably, systemic administration of nanoPDLIM2 reverses the phenotypes caused by PDLIM2 repression and induces complete remission of all lung tumors in most mice without further increasing toxicity when combined with anti-PD-1 and chemotherapeutic drugs. These findings provide a firm basis to combine ICIs and chemotherapeutic drugs with PDLIM2-targeted therapy for the treatment of lung and other cancers.</p></sec><sec id="s2" sec-type="results"><title>Results</title><sec id="s2-1"><title>Both epigenetic repression and genetic deletion of <italic>PDLIM2</italic> in lung cancer</title><p>Using 40% of the expression level in matched normal lung tissues as the cut-off in the analysis of the Cancer Genome Atlas (TCGA) data, we found that <italic>PDLIM2</italic> was repressed in over 75% of human lung tumors in a prior study (<xref ref-type="bibr" rid="bib29">Sun et al., 2019</xref>). If using 50% as the cut-off, <italic>PDLIM2</italic> was repressed in about 94% of human lung tumors (<xref ref-type="fig" rid="fig1">Figure 1A</xref>). Using 125% of the methylation level of the <italic>PDLIM2</italic> promoter in normal lung tissues as the cut-off to analyze TCGA database, over 70% of human lung tumors were found to have hypermethylation of the <italic>PDLIM2</italic> promoter (<xref ref-type="fig" rid="fig1">Figure 1A and B</xref>), further validating our previous finding of epigenetic silencing as the main mechanism underlying PDLIM2 repression (<xref ref-type="bibr" rid="bib29">Sun et al., 2019</xref>).</p><fig-group><fig id="fig1" position="float"><label>Figure 1.</label><caption><title>PDLIM2 repression in human lung cancer involves both epigenetic alteration and genetic deletion, and <italic>Pdlim2</italic> genetic deletion in mice leads to development of spontaneous tumors, majorly lung tumors.</title><p>(<bold>A</bold>) TCGA data showing <italic>PDLIM2</italic> repression in over 90% of lung tumors if using 50% of the expression level in normal lung tissues as the cut-off (NL, n=110; Tumor, n=1019). (<bold>B</bold>) TCGA data showing <italic>PDLIM2</italic> promoter hypermethylation and expression repression (dashed box) in over 70% of lung tumors when using 125% of the methylation level in normal lung tissues as the cut-off (n=827). (<bold>C</bold>) TCGA data showing positive associations between <italic>PDLIM2</italic> expression and its gene copy numbers as well as <italic>PDLIM2</italic> genetic deletion and expression repression (dashed box) in about 58% of lung tumors using the copy number variation of –0.1 as the cut-off (n=1010). (<bold>D</bold>) TCGA data showing simultaneous promoter hypermethylation and genomic deletion of <italic>PDLIM2</italic> (dashed box) in about 44% of lung tumors (n=816). (<bold>E</bold>) Microsatellite-PCR showing <italic>PDLIM2</italic> loss in human lung tumors (n=21). (<bold>F</bold>) qPCR showing <italic>PDLIM2</italic> loss in human lung cancer cell lines with known copy number of the <italic>PDLIM2</italic> gene (n=25). (<bold>G</bold>) Kaplan-Meier tumor-free survival curve showing increased spontaneous tumors in <italic>Pdlim2</italic><sup>-/-</sup> and <italic>Pdlim2</italic><sup>+/-</sup> mice compared to WT mice. Gehan-Breslow-Wilcoxon test was performed. *&lt;0.05. (<bold>H</bold>) Percentage of tumor types spontaneously developed in <italic>Pdlim2</italic><sup>-/-</sup> and <italic>Pdlim2</italic><sup>+/-</sup> mice showing a majority of lung tumors.</p><p><supplementary-material id="fig1sdata1"><label>Figure 1—source data 1.</label><caption><title>Excel file for the data shown in <xref ref-type="fig" rid="fig1">Figure 1A-G</xref>.</title></caption><media mimetype="application" mime-subtype="zip" xlink:href="elife-89638-fig1-data1-v1.zip"/></supplementary-material></p><p><supplementary-material id="fig1sdata2"><label>Figure 1—source data 2.</label><caption><title>Original files for the DNA gel images shown in <xref ref-type="fig" rid="fig1">Figure 1E</xref>.</title></caption><media mimetype="application" mime-subtype="zip" xlink:href="elife-89638-fig1-data2-v1.zip"/></supplementary-material></p><p><supplementary-material id="fig1sdata3"><label>Figure 1—source data 3.</label><caption><title>PDF file for the DNA gel images shown in <xref ref-type="fig" rid="fig1">Figure 1E</xref> with the relevant bands clearly labelled.</title></caption><media mimetype="application" mime-subtype="zip" xlink:href="elife-89638-fig1-data3-v1.zip"/></supplementary-material></p></caption><graphic mimetype="image" mime-subtype="tiff" xlink:href="elife-89638-fig1-v1.tif"/></fig><fig id="fig1s1" position="float" specific-use="child-fig"><label>Figure 1—figure supplement 1.</label><caption><title>Mice with PDLIM2 deletion develop spontaneous tumors, majorly lung tumors.</title><p>(<bold>A</bold>) IHC assays showing decreased and complete loss of PDLIM2 protein expression in the lungs of PDLIM2<sup>+/-</sup> and PDLIM2<sup>-/-</sup> mice, respectively. Scale bar, 20 µm. (<bold>B</bold>) H&amp;E staining of the lung tissues showing spontaneous lung tumors in PDLIM2<sup>+/-</sup> and PDLIM2<sup>-/-</sup> mice. Scale bar, 20 µm.</p></caption><graphic mimetype="image" mime-subtype="tiff" xlink:href="elife-89638-fig1-figsupp1-v1.tif"/></fig></fig-group><p>In line with <italic>PDLIM2</italic>’s location on chromosome 8p21.3, a frequent LOH region in lung and other tumors (<xref ref-type="bibr" rid="bib37">Wistuba et al., 1999</xref>; <xref ref-type="bibr" rid="bib11">Kang, 2015</xref>; <xref ref-type="bibr" rid="bib17">Macartney-Coxson et al., 2008</xref>; <xref ref-type="bibr" rid="bib32">Swalwell et al., 2002</xref>; <xref ref-type="bibr" rid="bib38">Wurster et al., 2017</xref>), analysis of TCGA database revealed that <italic>PDLIM2</italic> expression was positively associated with its gene copy numbers, and that over 58% of human lung tumors had genetic deletion of the <italic>PDLIM2</italic> gene if copy number variation (CNV) of –0.1 was used as the cut-off for the gene deletion (<xref ref-type="fig" rid="fig1">Figure 1C</xref>). Further analysis indicated that about 44% of human lung tumors simultaneously harbored the promoter hypermethylation and LOH of the <italic>PDLIM2</italic> gene, and approximately 27% and 14% of them only having the promoter hypermethylation or LOH of the <italic>PDLIM2</italic> gene, respectively (<xref ref-type="fig" rid="fig1">Figure 1D</xref>). Around 15% of lung tumors possessed no such epigenetic or genetic alterations in <italic>PDLIM2</italic>. These findings were confirmed by microsatellite and gene-specific PCR-based LOH analysis of human primary lung tumor tissues and cell lines (<xref ref-type="fig" rid="fig1">Figure 1E and F</xref>). These data suggested that PDLIM2 repression in lung cancer involves both epigenetic silencing and genetic deletion.</p><p>To determine the significance of <italic>PDLIM2</italic> LOH in lung tumors, we examined whether <italic>Pdlim2</italic> heterozygous deletion leads to decreased PDLIM2 expression and spontaneous tumors in mice. Unlike its absolute absence in <italic>Pdlim2</italic> homozygous deletion (<italic>Pdlim2</italic><sup>-/-</sup>) mice, PDLIM2 was detected in the lung of <italic>Pdlim2</italic><sup>+/-</sup> mice, but at a much lower level compared to wild type (WT) mice (<xref ref-type="fig" rid="fig1s1">Figure 1—figure supplement 1A</xref>). Importantly, <italic>Pdlim2</italic><sup>+/-</sup> mice, like <italic>Pdlim2</italic><sup>-/-</sup> mice, also developed spontaneous tumors (<xref ref-type="fig" rid="fig1">Figure 1G</xref>). Of note, over 50% of tumors developed in <italic>Pdlim2</italic><sup>-/-</sup> and <italic>Pdlim2</italic><sup>+/-</sup> mice were lung tumors (<xref ref-type="fig" rid="fig1">Figure 1H</xref>; <xref ref-type="fig" rid="fig1s1">Figure 1—figure supplement 1B</xref>). These data are also highly consistent with the fact that PDLIM2 is ubiquitously expressed under physiological conditions, with the highest level in the lung and lung epithelial cells in particular (<xref ref-type="bibr" rid="bib29">Sun et al., 2019</xref>; <xref ref-type="bibr" rid="bib35">Torrado et al., 2004</xref>; <xref ref-type="bibr" rid="bib33">Tanaka et al., 2005</xref>; <xref ref-type="bibr" rid="bib16">Loughran et al., 2005</xref>). Thus, PDLIM2 is a haploinsufficient tumor suppressor that is particularly important for lung tumor suppression.</p></sec><sec id="s2-2"><title>Efficacy of systemic administration of nanoPDLIM2 in refractory lung cancer</title><p>Although reversal of PDLIM2 epigenetic repression by epigenetic drugs to restore PDLIM2 expression in cancer cells may be used to treat lung cancer (<xref ref-type="bibr" rid="bib29">Sun et al., 2019</xref>), it is logical that this approach cannot be applied to lung tumors involving <italic>PDLIM2</italic> LOH, which accounts for about 58% of all lung cancer cases. To overcome this limitation and expand PDLIM2-targeted therapy to all lung tumors with PDLIM2 repression regardless of the involved mechanisms, we tested the therapeutic efficacy of systemic administration of PDLIM2-expression plasmids encapsulated by the clinically feasible in vivo-jetPEI (<xref ref-type="bibr" rid="bib18">Matouk et al., 2013</xref>; <xref ref-type="bibr" rid="bib3">Buscail et al., 2015</xref>; <xref ref-type="bibr" rid="bib19">Nyamay’Antu et al., 2019</xref>; <xref ref-type="bibr" rid="bib2">Bonnet et al., 2008</xref>; <xref ref-type="bibr" rid="bib42">Yang et al., 2013</xref>). To this end, we employed mouse lung tumors induced by urethane, a faithful model of human lung cancer and adenocarcinoma (AC) in particular (<xref ref-type="bibr" rid="bib29">Sun et al., 2019</xref>; <xref ref-type="bibr" rid="bib45">Zhou et al., 2015</xref>; <xref ref-type="bibr" rid="bib23">Qu et al., 2015</xref>; <xref ref-type="bibr" rid="bib12">Kellar et al., 2015</xref>; <xref ref-type="bibr" rid="bib46">Zhou et al., 2017</xref>; <xref ref-type="bibr" rid="bib14">Li et al., 2018</xref>; <xref ref-type="bibr" rid="bib28">Sun et al., 2016</xref>). Urethane is a chemical carcinogen present in fermented food, alcoholic beverage and also cigarette smoke, the predominant risk factor accounting for about 90% of human lung cancer cases (<xref ref-type="bibr" rid="bib9">Hecht, 2002</xref>). Like its human counterpart, the murine lung cancer induced by urethane also shares PDLIM2 repression, in addition to their similarities in histology, genetics, molecular biology, and immunology (<xref ref-type="bibr" rid="bib29">Sun et al., 2019</xref>; <xref ref-type="bibr" rid="bib30">Sun et al., 2020</xref>; <xref ref-type="bibr" rid="bib45">Zhou et al., 2015</xref>; <xref ref-type="bibr" rid="bib23">Qu et al., 2015</xref>; <xref ref-type="bibr" rid="bib12">Kellar et al., 2015</xref>; <xref ref-type="bibr" rid="bib46">Zhou et al., 2017</xref>; <xref ref-type="bibr" rid="bib14">Li et al., 2018</xref>; <xref ref-type="bibr" rid="bib28">Sun et al., 2016</xref>). WT mice with lung tumors induced by urethane were i.v. injected with nanoparticle-encapsulated <italic>Pdlim2</italic> plasmids or empty vector plasmids. Six weeks post the initial treatment of nanotherapy, mice were euthanized, and lung tissues were collected (<xref ref-type="fig" rid="fig2">Figure 2A</xref>). Compared to the vector plasmid mock-treated group (Vec), nanoPDLIM2-treated mice had a significantly reduced tumor burden in their lungs, although the decrease in tumor numbers was not statistically significant (<xref ref-type="fig" rid="fig2">Figure 2B</xref>).</p><fig id="fig2" position="float"><label>Figure 2.</label><caption><title>Systemic administration of PDLIM2 plasmid nanoparticles shows efficacy in mouse model of refractory lung cancer.</title><p>(<bold>A</bold>) Schedule of lung cancer induction and treatment. (<bold>B</bold>) Urethane model showing efficacy of intravenous administration of PDLIM2-expression plasmid nanoparticles for refractory lung cancer (n≥6). Nanoparticles with an empty vector plasmid (Vec) that was employed to express PDLIM2 were used as a control. (<bold>C</bold>) IHC staining showing decreased nuclear expression of STAT3 and RelA in lung tumors by PDLIM2 nanotherapy (n=6). (<bold>D</bold>) IHC staining showing decreased Bcl-xL and increased apoptosis marker cleaved caspase –3 in lung tumors by PDLIM2 nanotherapy (n=6). (<bold>E</bold>) IHC staining showing decreased Cyclin D1 and proliferation (BrdU incorporation) in lung tumors by PDLIM2 nanotherapy (n=6). Scale bar in (<bold>C–E</bold>), 20 μm. Student’s <italic>t</italic> test was performed (two tailed, unpaired) and data represent means ± SEM in (<bold>B–E</bold>). **p&lt;0.01; ns, not statistically significant.</p><p><supplementary-material id="fig2sdata1"><label>Figure 2—source data 1.</label><caption><title>Excel file for the data shown in <xref ref-type="fig" rid="fig2">Figure 2B-E</xref>.</title></caption><media mimetype="application" mime-subtype="zip" xlink:href="elife-89638-fig2-data1-v1.zip"/></supplementary-material></p></caption><graphic mimetype="image" mime-subtype="tiff" xlink:href="elife-89638-fig2-v1.tif"/></fig><p>In line with the tumor reduction, nanoPDLIM2 administration decreased nuclear RelA and STAT3, a hallmark of NF-κB and STAT3 activation, accordingly reduced the expression of their downstream cell survival gene Bcl-xL and cell proliferation gene Cyclin D1, increased apoptosis and decreased proliferation of lung cancer cells (<xref ref-type="fig" rid="fig2">Figure 2C-E</xref>). These data indicated that intravenous administration of nanoPDLIM2 shows efficacy in suppressing oncogenic RelA and STAT3 activation and in treating lung cancer.</p></sec><sec id="s2-3"><title>High tumor specificity and low toxicity of systemic administration of nanoPDLIM2</title><p>To characterize the potential new lung cancer therapy, we examined the expression levels of PDLIM2 in lung tumors and several organs, including the liver, kidney, and spleen. Consistent with the treatment efficacy, a high level of PDLIM2 was detected in the lung tumors from mice treated with the PDLIM2 plasmid nanoparticles one week post nanoPDLIM2 treatment, whereas no obvious PDLIM2 was found in the lung tumors from mice treated with the control plasmid nanoparticles (<xref ref-type="fig" rid="fig3">Figure 3A and B</xref>). It should be pointed out that the tumor delivery efficiency of PDLIM2-expression or control plasmid nanoparticles was similarly high (<xref ref-type="fig" rid="fig3">Figure 3B</xref>). However, either PDLIM2-expression or control plasmids were hardly detected in other organs/tissues of the same mice, including liver, kidney and spleen. Of note, in the first two days after injection, both empty vector and PDLIM2-expression plasmids were also detected at high levels in those tissues but quickly cleared afterward (data not shown), consistent with the well-documented tumor-specific enrichment of nanoparticles (<xref ref-type="bibr" rid="bib42">Yang et al., 2013</xref>; <xref ref-type="bibr" rid="bib4">Commisso et al., 2013</xref>; <xref ref-type="bibr" rid="bib10">Huang et al., 2017</xref>; <xref ref-type="bibr" rid="bib24">Shi et al., 2017</xref>). Consistently, ectopic Pdlim2 was not detected, and the levels of PDLIM2 proteins were comparable in these tissues (<xref ref-type="fig" rid="fig3">Figure 3B and C</xref>).</p><fig id="fig3" position="float"><label>Figure 3.</label><caption><title>PDLIM2 nanotherapy shows high tumor specificity and low toxicity.</title><p>(<bold>A</bold>) IHC staining showing high PDLIM2 re-expression in lung tumors after PDLIM2 nanotherapy. (<bold>B</bold>) PCR and IB assays showing lung tumor-specific plasmids delivery and PDLIM2 expression by PDLIM2 nanotherapy (n=3). (<bold>C</bold>) IHC staining showing comparable expression of PDLIM2 in the indicated tissues of mice treated with PDLIM2 expression plasmid or empty vector plasmid nanoparticles. (<bold>D</bold>) No significant changes in animal body weight by nanoPDLIM2 (n=5). (<bold>E</bold>) H&amp;E staining showing no noticeable changes in major organs by nanoPDLIM2. Scale bar: (<bold>A and C</bold>) 20 μm; (<bold>E</bold>) 50 μm.</p><p><supplementary-material id="fig3sdata1"><label>Figure 3—source data 1.</label><caption><title>Excel file for the data shown in <xref ref-type="fig" rid="fig3">Figure 3B, D</xref>.</title></caption><media mimetype="application" mime-subtype="zip" xlink:href="elife-89638-fig3-data1-v1.zip"/></supplementary-material></p><p><supplementary-material id="fig3sdata2"><label>Figure 3—source data 2.</label><caption><title>Original files for the Western blot images shown in <xref ref-type="fig" rid="fig3">Figure 3B</xref>.</title></caption><media mimetype="application" mime-subtype="zip" xlink:href="elife-89638-fig3-data2-v1.zip"/></supplementary-material></p><p><supplementary-material id="fig3sdata3"><label>Figure 3—source data 3.</label><caption><title>PDF file for the Western blot images shown in <xref ref-type="fig" rid="fig3">Figure 3B</xref> with the relevant bands clearly labelled.</title></caption><media mimetype="application" mime-subtype="zip" xlink:href="elife-89638-fig3-data3-v1.zip"/></supplementary-material></p></caption><graphic mimetype="image" mime-subtype="tiff" xlink:href="elife-89638-fig3-v1.tif"/></fig><p>In further support of the lung tumor-specific delivery, the i.v. injection of either PDLIM2-expression or control plasmid nanoparticles showed no obvious toxicity to animals, as evidenced by no significant changes in the animal body weight and histology of all organs/tissues we examined, including spleen, kidney and liver (<xref ref-type="fig" rid="fig3">Figure 3D and E</xref>). Mouse appearance and behaviors, such as eating, drinking, defecating, urinating, sniffing, grooming, and digging, were not different between PDLIM2-expression and control plasmid nanoparticle groups (data not shown). Taken together, these data suggested the therapeutic efficacy and low toxicity of PDLIM2-based nanotherapy in the mouse model of refractory lung cancer.</p></sec><sec id="s2-4"><title>Synergy of nanoPDLIM2 with chemotherapy in lung cancer treatment</title><p>Given the role of PDLIM2 in inhibiting the expression of cell survival and proliferation genes in tumor cells, which contribute to chemoresistance, we tested whether nanoPDLIM2 increases the efficacy of chemotherapy in the mouse model of lung cancer. Treatment with carboplatin and paclitaxel, two chemotherapeutic drugs that are often used together as the first-line treatment for lung and many other cancers, led to significant decrease in tumor number and tumor burden (<xref ref-type="fig" rid="fig4">Figure 4A</xref>). Importantly, combination with nanoPDLIM2 further significantly decreased both tumor number and tumor burden, suggesting a promising synergy between PDLIM2 nanotherapy and chemotherapy in lung cancer treatment. Consistently, significantly higher tumor cell apoptosis was detected in mice treated with the combination therapy, in comparison to those with nanoPDLIM2 or chemotherapy alone (<xref ref-type="fig" rid="fig4">Figure 4B</xref>).</p><fig id="fig4" position="float"><label>Figure 4.</label><caption><title>PDLIM2 nanotherapy renders lung cancers more vulnerable to chemotherapy.</title><p>(<bold>A</bold>) Urethane model showing synergy of PDLIM2 nanotherapy and chemotherapy in lung cancer treatment (n≥5). (<bold>B</bold>) IHC staining showing increased lung tumor cell apoptosis by PDLIM2 nanotherapy, chemotherapy, and further increase by their combination (n=6). (<bold>C</bold>) IHC staining showing RelA activation by chemotherapy and blockage of chemo activation of RelA by PDLIM2 nanotherapy (n=6). (<bold>D</bold>) IHC staining showing strong MDR1 induction by chemotherapy and blockage of MDR1 induction by PDLIM2 nanotherapy (n=6). Scale bar in (<bold>B–D</bold>), 20 μm. Student’s <italic>t</italic> test was performed (two tailed, unpaired) and data represent means ± SEM. *p&lt;0.05; **p&lt;0.01; ns, not statistically significant.</p><p><supplementary-material id="fig4sdata1"><label>Figure 4—source data 1.</label><caption><title>Excel file for the data shown in <xref ref-type="fig" rid="fig4">Figure 4A-D</xref>.</title></caption><media mimetype="application" mime-subtype="zip" xlink:href="elife-89638-fig4-data1-v1.zip"/></supplementary-material></p></caption><graphic mimetype="image" mime-subtype="tiff" xlink:href="elife-89638-fig4-v1.tif"/></fig><p>Another important mechanism contributing to the synergy between these two therapies involves nanoPDLIM2 blockade of the acquired chemoresistance of lung cancer cells. Chemotherapy induced strong RelA activation/nuclear expression and MDR1 expression (<xref ref-type="fig" rid="fig4">Figure 4C and D</xref>). NanoPDLIM2 not only repressed the constitutive activation of RelA in cancer cells but also prevented the strong induction of RelA activation and MDR1 expression by the chemotherapy. Thus, PDLIM2 nanotherapy improves the therapeutic efficacy of chemotherapy through blocking both intrinsic and acquired chemoresistance of lung cancer cells.</p></sec><sec id="s2-5"><title>NanoPDLIM2 enhancement of ICI’s efficacy in lung cancer treatment</title><p>High expression of cell survival genes also renders tumor cells resistant to the tumoricidal activity of cytotoxic T lymphocytes (CTLs), including those unleashed by ICIs. PDLIM2 nanotherapy should also enhance the efficacy of immunotherapy, given its ability in suppressing the expression of cell survival genes. Furthermore, NanoPDLIM2 increased the number of TILs and the expression of MHC-I, the most important and core components of immunotherapies including PD-1 immune checkpoint blockade therapy (<xref ref-type="fig" rid="fig5">Figure 5A and B</xref>). In line with our previous studies (<xref ref-type="bibr" rid="bib29">Sun et al., 2019</xref>), PD-1 blocking antibody showed some efficacies in the mouse model of lung cancer, as evidenced by the significant decrease in tumor burden and tumor number (<xref ref-type="fig" rid="fig5">Figure 5C</xref>). Combining with PDLIM2 nanotherapy further significantly decreased tumor burden, although the decrease in tumor number failed to reach statistical significance. Consistently, significant increases in both CD4<sup>+</sup> and CD8<sup>+</sup> TILs, CD8<sup>+</sup> CTL activation and lung tumor cell death were detected (<xref ref-type="fig" rid="fig5">Figure 5D-F</xref>).</p><fig id="fig5" position="float"><label>Figure 5.</label><caption><title>PDLIM2 nanotherapy increases the efficacy of PD-1 blockade immunotherapy for refractory lung cancer.</title><p>(<bold>A</bold>) IHC staining showing increased TILs in lung tumors by PDLIM2 nanotherapy (n=6). (<bold>B</bold>) FACS showing increased MHC-I expression in lung tumor cells by PDLIM2 nanotherapy (n=4). (<bold>C</bold>) Urethane model showing PDLIM2 nanotherapy enhancing PD-1 immunotherapy efficacy in lung cancer treatment (n≥5). (<bold>D</bold>) IHC staining showing increased TILs by PDLIM2 nanotherapy in the context of immunotherapy (n=6). (<bold>E</bold>) FACS showing increased activation of CD8<sup>+</sup> T cells by PDLIM2 nanotherapy in the context of immunotherapy (n=3). (<bold>F</bold>) IHC staining showing increased lung tumor cell apoptosis by PDLIM2 nanotherapy, immunotherapy, and further increase by their combination (n=6). Scale bar in (<bold>A, D, F</bold>), 20 μm. Student’s <italic>t</italic> test was performed (two tailed, unpaired) and data represent means ± SEM. **p&lt;0.01; ns, not statistically significant.</p><p><supplementary-material id="fig5sdata1"><label>Figure 5—source data 1.</label><caption><title>Excel file for the data shown in <xref ref-type="fig" rid="fig5">Figure 5A-F</xref>.</title></caption><media mimetype="application" mime-subtype="zip" xlink:href="elife-89638-fig5-data1-v1.zip"/></supplementary-material></p></caption><graphic mimetype="image" mime-subtype="tiff" xlink:href="elife-89638-fig5-v1.tif"/></fig></sec><sec id="s2-6"><title>Complete remission of all lung tumors in most mice by the combination treatment of nanoPDLIM2 and anti-PD-1 and chemotherapeutic drugs</title><p>Like most human lung tumors, lung tumors in our animal model exhibit decreased expression of PD-L1 on cell surface, in additional to the low expression of MHC-I and low number of TILs (<xref ref-type="bibr" rid="bib29">Sun et al., 2019</xref>; <xref ref-type="bibr" rid="bib30">Sun et al., 2020</xref>). In line with our previous finding that PD-L1 expression is largely independent of PDLIM2 (<xref ref-type="bibr" rid="bib29">Sun et al., 2019</xref>), nanoPDLIM2 failed to induce PD-L1 expression in lung tumors, which was in contrast to chemotherapy (<xref ref-type="fig" rid="fig6">Figure 6A</xref>). This may explain why the enhancing effect of nanoPDLIM2 on PD-1 blockade therapy is only moderate.</p><fig-group><fig id="fig6" position="float"><label>Figure 6.</label><caption><title>Combination of PDLIM2 nanotherapy, chemotherapy and immunotherapy shows great efficacy in lung cancer treatment.</title><p>(<bold>A</bold>) IHC staining showing PD-L1 induction by chemotherapy but not PDLIM2 nanotherapy. (<bold>B</bold>) Schedule of lung cancer induction and treatment. (<bold>C</bold>) Urethane model showing high resistance of lung tumors to the chemo and αPD-1 combination therapy in lung epithelial specific PDLIM2 deletion mice (ΔSPC) (n≥4). (<bold>D</bold>) IHC staining showing no MHC-I induction by chemotherapy, PD-1 immunotherapy or their combination (n=6). (<bold>E</bold>) Tumor examination showing complete remission of all lung tumors in 60% of mice by combination of the three therapies (n≥5). (<bold>F</bold>) IHC staining showing increased TILs by PDLIM2 nanotherapy in mice treated with anti-PD-1 and chemotherapeutic drugs (n=6). (<bold>G</bold>) FACS analysis showing increased lung CD8<sup>+</sup> T-cell activation by PDLIM2 nanotherapy in mice treated with anti-PD-1 and chemotherapeutic drugs (n=5). (<bold>H</bold>) No significant effect of PDLIM2 nanotherapy on the body weight of mice treated with anti-PD-1 and chemotherapeutic drugs (n=5). Scale bar in (<bold>A and F</bold>), 20 μm. Student’s <italic>t</italic> test was performed (two tailed, unpaired) and data represent means ± SEM in (<bold>c–g</bold>). *p&lt;0.05; **p&lt;0.01; ns, not statistically significant.</p><p><supplementary-material id="fig6sdata1"><label>Figure 6—source data 1.</label><caption><title>Excel file for the data shown in <xref ref-type="fig" rid="fig6">Figure 6C-H</xref>.</title></caption><media mimetype="application" mime-subtype="zip" xlink:href="elife-89638-fig6-data1-v1.zip"/></supplementary-material></p></caption><graphic mimetype="image" mime-subtype="tiff" xlink:href="elife-89638-fig6-v1.tif"/></fig><fig id="fig6s1" position="float" specific-use="child-fig"><label>Figure 6—figure supplement 1.</label><caption><title>PDLIM2 nanotherapy causes no obvious toxicity in major organs.</title><p>(H &amp; E) staining showing comparable toxicity in lung, liver, kidney, and spleen between Vec and PDLIM2 group in the context of combinational chemotherapy and PD-1 blockade immunotherapy (n=5). Scale bar: 50 µm.</p></caption><graphic mimetype="image" mime-subtype="tiff" xlink:href="elife-89638-fig6-figsupp1-v1.tif"/></fig><fig id="fig6s2" position="float" specific-use="child-fig"><label>Figure 6—figure supplement 2.</label><caption><title>Epigenetic drugs cause body weight loss in mice with lung cancer.</title><p>Mice were <italic>i.p</italic>. injected with urethane (1 g/kg) for 6 weeks to induce lung tumors, and then treated for 6 weeks with 5-aza-dC and MS-275 (Epi, <italic>i.p</italic>., 1 mg/kg each, twice per week), carboplatin and paclitaxel (Chemo, <italic>i.p</italic>., 30 mg/kg and 15 mg/kg, respectively, once per week), or their combinations. (<bold>A</bold>) Body weight change between prior to the first treatment and the sacrifice endpoint. (<bold>B</bold>) Percentage of mice with peritoneal effusion (n ≥ 4). Excel file for the data shown in <xref ref-type="fig" rid="fig6s3">Figure 6—figure supplement 3</xref>.</p><p><supplementary-material id="fig6s2sdata1"><label>Figure 6—figure supplement 2—source data 1.</label><caption><title>Excel file for the data shown in <xref ref-type="fig" rid="fig6s2">Figure 6—figure supplement 2</xref>.</title></caption><media mimetype="application" mime-subtype="zip" xlink:href="elife-89638-fig6-figsupp2-data1-v1.zip"/></supplementary-material></p></caption><graphic mimetype="image" mime-subtype="tiff" xlink:href="elife-89638-fig6-figsupp2-v1.tif"/></fig><fig id="fig6s3" position="float" specific-use="child-fig"><label>Figure 6—figure supplement 3.</label><caption><title>Epigenetic drugs show better efficacy in lung cancer treatment.</title><p>Mice were <italic>i.p</italic>. injected with urethane (1 g/kg) for 6 weeks to induce lung tumors, and then treated with 5-aza-dC and MS-275 (Epi, <italic>i.p</italic>., 1 mg/kg each, twice per week), carboplatin and paclitaxel (Chemo, <italic>i.p</italic>., 30 mg/kg and 15 mg/kg, respectively, once per week), anti-PD-1 antibody (aPD-1, <italic>i.p</italic>., 200 µg/mouse, three times per week), PDLIM2-expression plasmids containing nanoparticles (<italic>i.v</italic>., 25 µg plasmid/mouse, once per week), or their combinations for 6 weeks before they were sacrificed for tumor examination (n≥4).</p><p><supplementary-material id="fig6s3sdata1"><label>Figure 6—figure supplement 3—source data 1.</label><caption><title>Excel file for the data shown in <xref ref-type="fig" rid="fig6s3">Figure 6—figure supplement 3</xref>.</title></caption><media mimetype="application" mime-subtype="zip" xlink:href="elife-89638-fig6-figsupp3-data1-v1.zip"/></supplementary-material></p></caption><graphic mimetype="image" mime-subtype="tiff" xlink:href="elife-89638-fig6-figsupp3-v1.tif"/></fig></fig-group><p>Although it dramatically increases TILs as well (<xref ref-type="bibr" rid="bib29">Sun et al., 2019</xref>), chemotherapy also induced the expression of PD-L1 on cancer cells (<xref ref-type="fig" rid="fig6">Figure 6A</xref>), which presumably protects cancer cells from immune attack and thereby restricts further efficacy improvement of its combination with PDLIM2 nanotherapy. But it may increase the sensitivity of cancer cells to PD-1 blockade therapy, particularly in combination with nanoPDLIM2. Indeed, chemotherapy and PD-1 blockade therapy showed a promising synergy in reducing both tumor number and tumor burden in comparison to the individual treatment of chemotherapy or PD-1 blockade therapy (<xref ref-type="bibr" rid="bib29">Sun et al., 2019</xref>). The synergy was largely blocked when <italic>Pdlim2</italic> was genetically deleted from lung cancer cells (ΔSPC; <xref ref-type="fig" rid="fig6">Figure 6B and C</xref>), suggesting an important role of PDLIM2 in the combination therapy of chemotherapeutic drugs and anti-PD-1. Whereas PDLIM2 nanotherapy increased MHC-I expression on tumor cells (<xref ref-type="fig" rid="fig5">Figure 5B</xref>), which is critical for better recognition and killing of tumor cells by CD8<sup>+</sup> CTLs, chemotherapy alone or its combination with anti-PD-1 failed to do so (<xref ref-type="fig" rid="fig6">Figure 6D</xref>). Accordingly, combination of anti-PD-1 and chemotherapeutic drugs, like the combination therapies of nanoPDLIM2 and anti-PD-1 or chemotherapeutic drugs, also failed to induce a complete remission of lung tumors in any mice.</p><p>Given their overlapping roles in increasing TILs and in particular their complement roles in inducing MHC-I and PD-L1 expression on tumor cells, which turn tumors hot and more sensitive to PD-1 blockade, combination of nanoPDLIM2 and chemotherapeutic drugs with anti-PD-1 is expected to show better efficacy compared to combining only two of them. Indeed, combination of all three showed the strongest effect on reducing tumor burden and numbers, and caused complete remission of all lung tumors in 60% of mice (<xref ref-type="fig" rid="fig6">Figure 6E</xref>) and much more shrinkage of lung tumors in remaining mice in comparison to those treated with two combined therapies. In line with the high therapeutic efficacy, the triple combination therapy significantly increased the numbers and/or activation of CD4<sup>+</sup> and CD8<sup>+</sup> T cells in the lung, compared to the combination of chemotherapeutic drugs and anti-PD-1 (<xref ref-type="fig" rid="fig6">Figure 6F and G</xref>).</p><p>Of note, consistent with the undetectable toxicity of PDLIM2 nanotherapy, its co-treatment did not further increase the toxicity of anti-PD-1 and chemotherapeutic drugs. There was no obvious histological difference of major organs, including the liver, lung, kidney, and spleen (<xref ref-type="fig" rid="fig6s1">Figure 6—figure supplement 1</xref>). Moreover, no significant differences in animal body weights were observed by additional nanoPDLIM2, in comparison to the mice received the combinational treatment of anti-PD-1 and chemotherapeutic drugs in the presence or absence of empty vector plasmid nanoparticles (<xref ref-type="fig" rid="fig6">Figure 6H</xref>). These data suggested a novel combination therapy with very high therapeutic efficacy and no increased toxicity for lung cancer, particularly refractory lung cancer.</p></sec></sec><sec id="s3" sec-type="discussion"><title>Discussion</title><p>PD-1/PD-L1 blockade immunotherapy has recently joined chemotherapy as a standard treatment for lung and several other cancers (<xref ref-type="bibr" rid="bib5">Doroshow et al., 2019</xref>; <xref ref-type="bibr" rid="bib47">Zou et al., 2016</xref>; <xref ref-type="bibr" rid="bib44">Zappasodi et al., 2018</xref>). While some patients have shown dramatic responses, most patients do not benefit from this novel treatment. Currently, various combinations of ICIs with other therapies, in particular its combination with chemotherapeutic drugs are being extensively tested in both preclinical and clinical trial studies to expand the benefit of this innovative therapy (<xref ref-type="bibr" rid="bib29">Sun et al., 2019</xref>; <xref ref-type="bibr" rid="bib7">Garassino et al., 2020</xref>; <xref ref-type="bibr" rid="bib13">Leonetti et al., 2019</xref>). Although a promising synergy and better efficacy has been observed in both preclinical animal models and human clinical trial studies (<xref ref-type="bibr" rid="bib29">Sun et al., 2019</xref>; <xref ref-type="bibr" rid="bib7">Garassino et al., 2020</xref>; <xref ref-type="bibr" rid="bib13">Leonetti et al., 2019</xref>), significant further improvement is direly needed. Using an authentic mouse model of lung cancer, we show, for the first time, that PDLIM2 nanotherapy shows efficacy and high safety, and more importantly, induces complete remission of all lung tumors in most animals when it is combined with anti-PD-1 and chemotherapeutic drugs.</p><p>Most human lung tumors as well as lung tumors in our animal model have low numbers of TILs and decreased expression of PD-L1 and MHC-I on the cell surface (<xref ref-type="bibr" rid="bib29">Sun et al., 2019</xref>; <xref ref-type="bibr" rid="bib30">Sun et al., 2020</xref>), all of which are important mechanisms contributing to the resistance to PD-1 blockade therapy. Through inducing immunogenic cell death (ICD) of cancer cells (<xref ref-type="bibr" rid="bib13">Leonetti et al., 2019</xref>), chemotherapy can increase TILs and PD-L1 expression on tumor cells, and thereby synergize with anti-PD-1. However, chemotherapy cannot induce MHC-I expression, which limits further improvement of its synergy with immune therapy for complete cancer remission. Also, tumor cells usually express high levels of survival genes against the tumoricidal effects of chemotherapeutic drugs and of CTLs, including those activated by chemotherapy and unleashed by ICIs.</p><p>On the other hand, PDLIM2 nanotherapy induces MHC-I expression and lymphocyte tumor infiltration but does not up-regulate PD-L1. Moreover, PDLIM2 nanotherapy prevents the induction of MDR1 and the expression of tumor-related genes and in particular cell survival genes, further sensitizing tumor cells to the cytotoxicity of chemotherapeutic drugs and immune cells including those recruited by chemotherapy and unleashed by PD-1 blockade. Because of these important functions of PDLIM2 nanotherapy, PDLIM2 nanotherapy improved the efficacy of chemotherapy and PD-1 blockade therapy, and in combination with chemotherapy and PD-1 blockade therapy, resulted in complete cancer remission in most of the animals and dramatic tumor reduction in the remaining mice.</p><p>Another important clinical characteristic of PDLIM2 nanotherapy is its tumor-specificity and high safety profile. It delivered PDLIM2-expression plasmids to lung tumor tissues and showed undetectable toxicity in the animal model. Its combination does not further increase the toxicity of anti-PD-1 and chemotherapeutic drugs. This is in sharp contrast to the Food and Drug Administration (FDA)-approved epigenetic drugs, which can restore PDLIM2 expression in cancer cells with PDLIM2 epigenetic repression (<xref ref-type="bibr" rid="bib29">Sun et al., 2019</xref>; <xref ref-type="bibr" rid="bib8">Guo and Qu, 2021</xref>; <xref ref-type="bibr" rid="bib20">Qu et al., 2010a</xref>; <xref ref-type="bibr" rid="bib21">Qu et al., 2010b</xref>; <xref ref-type="bibr" rid="bib27">Sun et al., 2015</xref>; <xref ref-type="bibr" rid="bib41">Yan et al., 2009b</xref>; <xref ref-type="bibr" rid="bib36">Vanoirbeek et al., 2014</xref>). Epigenetic drug treatment leads to body weight loss of animals (<xref ref-type="fig" rid="fig6s2">Figure 6—figure supplement 2A</xref>). The toxicity is much worse when epigenetic drugs are combined with chemotherapy (<xref ref-type="fig" rid="fig6s2">Figure 6—figure supplement 2</xref>).</p><p>Besides its side effects, epigenetic therapy should have much more limited application, even though it shows better efficacy as a monotherapy or combined with chemotherapeutic drugs or anti-PD-1 in comparison to PDLIM2 nanotherapy (<xref ref-type="fig" rid="fig6s3">Figure 6—figure supplement 3</xref>). While nanoPDLIM2-based combination therapies could be applicable to all lung tumors with PDLIM2 repression regardless of the mechanisms involved, epigenetic therapy may be used to treat about 26% of lung tumors with PDLIM2 epigenetic repression only. About 58% of lung tumors harboring PDLIM2 LOH are not suitable to epigenetic therapies, although most of them are also with epigenetic alterations of the <italic>pdlim2</italic> gene. Of note, the therapeutic efficacy of epigenetic therapy depends on PDLIM2 expression (<xref ref-type="bibr" rid="bib29">Sun et al., 2019</xref>), and PDLIM2 heterozygous loss causes spontaneous lung and other cancers. Further, the efficacy and toxicity of the combination of epigenetic agents with both anti-PD-1 and chemotherapeutic drugs has not been examined yet.</p><p>In summary, the presented data identify genetic deletions as a major mechanism other than epigenetic alterations for PDLIM2 repression in human lung cancer, and PDLIM2 as a haploinsufficient tumor suppressor particularly important for suppressing lung cancer and therapy resistance. More importantly, these preclinical data establish a novel combination treatment of nanoPDLIM2, anti-PD-1 and chemotherapeutic drugs that induces complete remission of all lung tumors in most animals and is also with high safety profile. We believe that these knowledges are applicable to other cancers, because PDLIM2 repression has also been linked to numerous human cancers other than lung cancer.</p></sec><sec id="s4" sec-type="materials|methods"><title>Materials and methods</title><table-wrap id="keyresource" position="anchor"><label>Key resources table</label><table frame="hsides" rules="groups"><thead><tr><th align="left" valign="bottom">Reagent type (species) or resource</th><th align="left" valign="bottom">Designation</th><th align="left" valign="bottom">Source or reference</th><th align="left" valign="bottom">Identifiers</th><th align="left" valign="bottom">Additional information</th></tr></thead><tbody><tr><td align="left" valign="bottom">Gene (<italic>Homo sapiens</italic>)</td><td align="left" valign="bottom"> <italic>PDLIM2</italic></td><td align="left" valign="bottom">GenBank</td><td align="char" char="." valign="bottom">64236</td><td align="left" valign="bottom"/></tr><tr><td align="left" valign="bottom">Gene (<italic>Mus musculus</italic>)</td><td align="left" valign="bottom"> <italic>Pdlim2</italic></td><td align="left" valign="bottom">GenBank</td><td align="char" char="." valign="bottom">213019</td><td align="left" valign="bottom"/></tr><tr><td align="left" valign="bottom">Strain, strain background (<italic>Mus musculus</italic>)</td><td align="left" valign="bottom"> FVB/N</td><td align="left" valign="bottom">Ref# 6, 28</td><td align="left" valign="bottom"><italic>Pdlim2</italic><sup>flx/flx</sup>/<italic>SP-C</italic>-rtTA<sup>tg/−</sup>/(tetO)7CMV-Cre<sup>tg/tg</sup> (ΔSPC)</td><td align="left" valign="bottom"/></tr><tr><td align="left" valign="bottom">Strain, strain background (<italic>Mus musculus</italic>)</td><td align="left" valign="bottom"> BAB/c</td><td align="left" valign="bottom"> Ref# 6, 19, 21, 22</td><td align="left" valign="bottom"><italic>Pdlim2</italic><sup>-/-</sup></td><td align="left" valign="bottom"/></tr><tr><td align="left" valign="bottom">Commercial assay or kit</td><td align="left" valign="bottom"> in vivo-jetPEI</td><td align="left" valign="bottom"> Polyplus Transfection</td><td align="char" char="." valign="bottom">101000030</td><td align="left" valign="bottom"/></tr><tr><td align="left" valign="bottom">Recombinant DNA reagent</td><td align="left" valign="bottom"> pCMV-myc-Pdlim2</td><td align="left" valign="bottom"> This paper</td><td align="left" valign="bottom">PDLIM2 plasmid</td><td align="left" valign="bottom"> PDLIM2 expression plasmid</td></tr><tr><td align="left" valign="bottom">Chemical compound, drug</td><td align="left" valign="bottom"> Carboplatin</td><td align="left" valign="bottom"> AdipoGen</td><td align="left" valign="bottom">AG-CR1-3591</td><td align="left" valign="bottom"/></tr><tr><td align="left" valign="bottom">Chemical compound, drug</td><td align="left" valign="bottom"> Paclitaxel</td><td align="left" valign="bottom"> AdipoGen</td><td align="left" valign="bottom">AG-CN2-0045</td><td align="left" valign="bottom"/></tr><tr><td align="left" valign="bottom">Cell line (<italic>Homo sapiens</italic>)</td><td align="left" valign="bottom"> Lung cancer cell lines</td><td align="left" valign="bottom"> Ref# 6</td><td align="left" valign="bottom">Calu-6 (RRID:<ext-link ext-link-type="uri" xlink:href="https://identifiers.org/RRID:CVCL_0236">CVCL_0236</ext-link>)<break/>H727 (RRID:<ext-link ext-link-type="uri" xlink:href="https://identifiers.org/RRID:CVCL_1584">CVCL_1584</ext-link>)<break/>H23 (RRID:<ext-link ext-link-type="uri" xlink:href="https://identifiers.org/RRID:CVCL_1547">CVCL_1547</ext-link>)<break/>H358 (RRID:<ext-link ext-link-type="uri" xlink:href="https://identifiers.org/RRID:CVCL_1559">CVCL_1559</ext-link>)<break/>SKLU-1 (RRID:<ext-link ext-link-type="uri" xlink:href="https://identifiers.org/RRID:CVCL_0629">CVCL_0629</ext-link>)<break/>SW1573 (RRID:<ext-link ext-link-type="uri" xlink:href="https://identifiers.org/RRID:CVCL_1720">CVCL_1720</ext-link>)<break/>CALU-1 (RRID:<ext-link ext-link-type="uri" xlink:href="https://identifiers.org/RRID:CVCL_0608">CVCL_0608</ext-link>)<break/>128-88 T (RRID:<ext-link ext-link-type="uri" xlink:href="https://identifiers.org/RRID:CVCL_A2AG">CVCL_A2AG</ext-link>)<break/>H1299 (RRID:<ext-link ext-link-type="uri" xlink:href="https://identifiers.org/RRID:CVCL_0060">CVCL_0060</ext-link>)<break/>273T (RRID:<ext-link ext-link-type="uri" xlink:href="https://identifiers.org/RRID:CVCL_Y296">CVCL_Y296</ext-link>)<break/>HCC827 (RRID:<ext-link ext-link-type="uri" xlink:href="https://identifiers.org/RRID:CVCL_2063">CVCL_2063</ext-link>)<break/>H1650 (RRID:<ext-link ext-link-type="uri" xlink:href="https://identifiers.org/RRID:CVCL_1483">CVCL_1483</ext-link>)<break/>H3255 (RRID:<ext-link ext-link-type="uri" xlink:href="https://identifiers.org/RRID:CVCL_6831">CVCL_6831</ext-link>)<break/>343T (RRID:<ext-link ext-link-type="uri" xlink:href="https://identifiers.org/RRID:CVCL_A2AK">CVCL_A2AK</ext-link>)<break/>Calu-3 (RRID:<ext-link ext-link-type="uri" xlink:href="https://identifiers.org/RRID:CVCL_0609">CVCL_0609</ext-link>)<break/>H1435 (RRID:<ext-link ext-link-type="uri" xlink:href="https://identifiers.org/RRID:CVCL_1470">CVCL_1470</ext-link>)<break/>H1793 (RRID:<ext-link ext-link-type="uri" xlink:href="https://identifiers.org/RRID:CVCL_1496">CVCL_1496</ext-link>)<break/>H596 (RRID:<ext-link ext-link-type="uri" xlink:href="https://identifiers.org/RRID:CVCL_1571">CVCL_1571</ext-link>)<break/>H838 (RRID:<ext-link ext-link-type="uri" xlink:href="https://identifiers.org/RRID:CVCL_1594">CVCL_1594</ext-link>)<break/>H1838 (RRID:<ext-link ext-link-type="uri" xlink:href="https://identifiers.org/RRID:CVCL_1594">CVCL_1594</ext-link>)<break/>A-549 (RRID:<ext-link ext-link-type="uri" xlink:href="https://identifiers.org/RRID:CVCL_0023">CVCL_0023</ext-link>)<break/>H1975 (RRID:<ext-link ext-link-type="uri" xlink:href="https://identifiers.org/RRID:CVCL_1511">CVCL_1511</ext-link>)</td><td align="left" valign="bottom"> Cell lines maintained in the laboratories of Dr. Gutian Xiao and Dr Zhaoxia Qu</td></tr><tr><td align="left" valign="bottom">Cell line (<italic>Homo sapiens</italic>)</td><td align="left" valign="bottom"> nontumorigenic bronchial epithelial cell line from normal adult</td><td align="left" valign="bottom"> ATCC</td><td align="left" valign="bottom">NL20 (RRID:, <ext-link ext-link-type="uri" xlink:href="https://identifiers.org/RRID:CVCL_3756">CVCL_3756</ext-link>, ATCC# CRL-2503)</td><td align="left" valign="bottom"/></tr><tr><td align="left" valign="bottom">Software</td><td align="left" valign="bottom"> Flow data acquisition and analysis</td><td align="left" valign="bottom"> BD Biosciences</td><td align="left" valign="bottom">Accuri C6</td><td align="left" valign="bottom"/></tr><tr><td align="left" valign="bottom">Software</td><td align="left" valign="bottom"> Flow data acquisition</td><td align="left" valign="bottom"> BD Biosciences</td><td align="left" valign="bottom">FACSDiva</td><td align="left" valign="bottom"/></tr><tr><td align="left" valign="bottom">Software</td><td align="left" valign="bottom"> Flow data analysis</td><td align="left" valign="bottom"> FlowJo</td><td align="left" valign="bottom">FlowJo</td><td align="left" valign="bottom"/></tr><tr><td align="left" valign="bottom">Software</td><td align="left" valign="bottom"> Data statistical analysis and graph presentation</td><td align="left" valign="bottom"> GraphPad</td><td align="left" valign="bottom">Graphpad Prism</td><td align="left" valign="bottom"/></tr></tbody></table></table-wrap><sec id="s4-1"><title>Animals and lung carcinogenesis</title><p>We have complied with all relevant ethical regulations for animal testing and research. The animal experiments were performed in accordance with the US National Institutes of Health (NIH) Guidelines on the Use of Laboratory Animals. All animals were maintained under pathogen-free conditions and used according to protocols approved by the Institutional Animal Care and Use Committee (IACUC) of the University of Pittsburgh. <italic>Pdlim2</italic><sup>flx/flx</sup>/<italic>SP-C</italic>-rtTA<sup>tg/−</sup>/(tetO)7CMV-Cre<sup>tg/tg</sup> (ΔSPC) mice under a pure FVB/N background and <italic>Pdlim2</italic><sup>-/-</sup> mice under a pure BALB/c background have been described before (<xref ref-type="bibr" rid="bib29">Sun et al., 2019</xref>; <xref ref-type="bibr" rid="bib33">Tanaka et al., 2005</xref>; <xref ref-type="bibr" rid="bib34">Tanaka et al., 2007</xref>; <xref ref-type="bibr" rid="bib22">Qu et al., 2012</xref>; <xref ref-type="bibr" rid="bib15">Li et al., 2021</xref>). For lung carcinogenesis, 6- to 8-week-old ΔSPC and wild type FVB/N mice were intraperitoneally (i.p.) injected with urethane (1 mg/g body weight, Sigma-Aldrich, St. Louis, MO, USA) once a week for 6 consecutive weeks (<xref ref-type="bibr" rid="bib29">Sun et al., 2019</xref>), followed by different treatments as shown in the figures. Mice were euthanized at six weeks post urethane treatment for examination of lung tumors, inflammation, and treatment-induced toxicity. Surface tumors in mouse lungs were counted blinded under a dissecting microscope, and tumor diameters were measured by microcalipers.</p></sec><sec id="s4-2"><title>Cell lines</title><p>All the human lung cancer cell lines were originally obtained from colleagues in University of Pittsburgh (<xref ref-type="bibr" rid="bib29">Sun et al., 2019</xref>) and maintained in the lab. The nontumorigenic human bronchial epithelial cell line NL-20 was originally purchased from American Type Culture Collection (ATCC, Cat# CRL-2503). The cell lines were authenticated by short tandem repeat profiling, and have been tested negative for Mycoplasma.</p></sec><sec id="s4-3"><title>Preparation of PDLIM2-expression plasmid or empty vector plasmid nanoparticles</title><p>The polyethylenimine (PEI)-based nanoparticles (in vivo-jetPEI) (Polyplus Transfection, New York, NY, USA) and plasmid DNA complexes at a nitrogen-to-phosphate ratio of 8 (N/<italic>P</italic>=8) were prepared according to the manufacturer’s instructions. Briefly, 25  µg of pCMV-myc-<italic>Pdlim2</italic> or empty vector plasmids in 100  μl of a 5% glucose solution were mixed with the in vivo-jetPEI reagent (4  μl) diluted into 100  μl of a 5% glucose solution. After 15  min of incubation at room temperature, the mixed solution (200 μl/mouse) was injected intravenously (i.v.) via the tail vein. PDLIM2-expression plasmid or empty vector plasmid DNA in tissues were measured by quantitative PCR assays targeting <italic>Amp-R</italic> in the genome of these plasmids, normalized with <italic>Lyz2</italic> within the mouse genome.</p></sec><sec id="s4-4"><title>Histology and immunohistochemistry (IHC) analysis</title><p>Lung, liver, kidney, and spleen tissues were excised, fixed in formalin, embedded in paraffin, and cut into 4-μm-thick sections. Sections were stained with H&amp;E or subjected to sequential incubations with the indicated primary antibodies, biotinylated secondary antibodies and streptavidin-HRP (<xref ref-type="bibr" rid="bib29">Sun et al., 2019</xref>). Antibodies were listed in <xref ref-type="supplementary-material" rid="supp1">Supplementary file 1a</xref>.</p></sec><sec id="s4-5"><title>In vivo BrdU labeling</title><p>Mice were i.p. injected with 50  mg/kg BrdU (Sigma-Aldrich, St. Louis, MO, USA) 24  hr prior to euthanasia. Mouse lung tissue sections were stained with anti-BrdU (Sigma-Aldrich, St. Louis, MO, USA). BrdU labeling index was calculated as the percentage of labeled cells per total cells counted (&gt;500 cells in each counted tumor-containing area).</p></sec><sec id="s4-6"><title>Flow cytometry (FACS) analysis</title><p>The cells were isolated from mouse lungs using collagenase/dispase digestion followed by filtration with 70 μm Nylon cell strainer and red blood cell lysis; then the cells were incubated with the antibodies against cell surface antigens after blocked with αCD16/CD32. The cells were then fixed with paraformaldehyde (2%), permeabilized and incubated with antibodies against intracellular antigens if needed. For interferon-γ (IFNγ) staining, cells were treated with phorbol 12-myristate 13-acetate (PMA, 50  ng/ml), ionomycin (1  μM), brefeldin A (BFA, 3  μg/ml), and monensin (2  μM) for 4  hr before they were stained for FACS analysis. Data were acquired and analyzed by Accuri C6 or LSRFortessa I (BD Biosciences) and FlowJo software (<xref ref-type="bibr" rid="bib31">Sun et al., 2021</xref>).</p></sec><sec id="s4-7"><title>Quantitative polymerase chain reaction (qPCR) analysis</title><p>The indicated tissues or cells were subjected to DNA or RNA extraction, RNA reverse transcription and real-time PCR using trizol, reverse transcriptase, and Power SYBR Green PCR Master Mix (Thermo Fisher Scientific, Waltham, MA, USA) according to manufacturer’s protocol. Primer pairs used for qPCR were listed in <xref ref-type="supplementary-material" rid="supp1">Supplementary file 1b</xref>.</p></sec><sec id="s4-8"><title>Microsatellite and gene-specific PCR-based LOH analysis of <italic>PDLIM2</italic></title><p>Genomic DNAs were isolated from human lung tumors and their matched normal tissues using the PureLink Genomic DNA Purification Kit (Invitrogen, Carlsbad, CA, USA), and subjected to semi-quantitative PCR using the primers specific for the microsatellite markers D8S1786 and D8S1752 that straddle the <italic>PDLIM2</italic> genetic locus or the <italic>PDLIM2</italic> genetic locus itself. Primer pairs used for the assays were listed in <xref ref-type="supplementary-material" rid="supp1">Supplementary file 1b</xref>.</p></sec><sec id="s4-9"><title>Statistical analysis</title><p>One-way ANOVA power analysis was used to determine the minimum sample size. Animals were randomly assigned to different treatment groups. Measurements were taken from distinct samples. Student’s t test (two tailed) and one-way ANOVA/Tukey’s or two-way ANOVA/Sidak’s test were used to assess significance of differences between two groups and multiple comparisons, respectively. Pearson’s correlation test was used to assess association between <italic>PDLIM2</italic> expression with its promoter methylation or genetic deletion and the overlap between <italic>PDLIM2</italic> promoter methylation and genetic deletion. All bars in figures represent means  ± SEM. The <italic>p</italic> values are indicated as *p &lt; 0.05, **p &lt; 0.01, ns, not statistically significant, except for those shown in figures. The p-values &lt; 0.05 and 0.01 are considered statistically significant and highly statistically significant, respectively. Grubbs' and ROUT outlier tests were established a priori. There were no exclusions in the analyses.</p></sec></sec></body><back><sec sec-type="additional-information" id="s5"><title>Additional information</title><fn-group content-type="competing-interest"><title>Competing interests</title><fn fn-type="COI-statement" id="conf1"><p>No competing interests declared</p></fn></fn-group><fn-group content-type="author-contribution"><title>Author contributions</title><fn fn-type="con" id="con1"><p>Data curation, Formal analysis, Validation, Investigation, Visualization, Methodology, Writing – review and editing</p></fn><fn fn-type="con" id="con2"><p>Data curation, Formal analysis, Validation, Investigation, Visualization, Methodology, Writing – review and editing</p></fn><fn fn-type="con" id="con3"><p>Data curation, Validation, Investigation, Visualization, Methodology, Writing – review and editing</p></fn><fn fn-type="con" id="con4"><p>Writing – review and editing</p></fn><fn fn-type="con" id="con5"><p>Conceptualization, Supervision, Investigation, Methodology, Writing – review and editing</p></fn><fn fn-type="con" id="con6"><p>Conceptualization, Resources, Data curation, Formal analysis, Supervision, Funding acquisition, Validation, Investigation, Visualization, Methodology, Writing – original draft, Project administration, Writing – review and editing</p></fn><fn fn-type="con" id="con7"><p>Conceptualization, Resources, Data curation, Formal analysis, Supervision, Funding acquisition, Validation, Investigation, Visualization, Methodology, Writing – original draft, Project administration, Writing – review and editing</p></fn></fn-group><fn-group content-type="ethics-information"><title>Ethics</title><fn fn-type="other"><p>We have complied with all relevant ethical regulations for animal testing and research. The animal experiments were performed in accordance with the US National Institutes of Health (NIH) Guidelines on the Use of Laboratory Animals. All animals were maintained under pathogen-free conditions and used according to protocols approved by the Institutional Animal Care and Use Committee (IACUC) of the University of Pittsburgh (Animal Welfare Assurance Number D16-00118).</p></fn></fn-group></sec><sec sec-type="supplementary-material" id="s6"><title>Additional files</title><supplementary-material id="mdar"><label>MDAR checklist</label><media xlink:href="elife-89638-mdarchecklist1-v1.docx" mimetype="application" mime-subtype="docx"/></supplementary-material><supplementary-material id="supp1"><label>Supplementary file 1.</label><caption><title>Antibodies and primers used.</title></caption><media xlink:href="elife-89638-supp1-v1.docx" mimetype="application" mime-subtype="docx"/></supplementary-material></sec><sec sec-type="data-availability" id="s7"><title>Data availability</title><p>TCGA lung adenocarcinoma, lung squamous cell carcinoma, and lung cancer data we analyzed were obtained from the Cancer Genome Atlas Program (<ext-link ext-link-type="uri" xlink:href="https://www.cancer.gov/tcga">https://www.cancer.gov/tcga</ext-link>). All data generated or analyzed during this study are included in the manuscript and supporting files; source data files have been provided for all the figures.</p></sec><ack id="ack"><title>Acknowledgements</title><p>The authors thank Dr. MJ Grusby (Harvard School of Public Health) and Dr. JA Whitsett (University of Cincinnati College of Medicine) for providing PDLIM2<sup>-/-</sup> and SP-C-rtTA<sup>tg/−</sup>/(tetO)7CMV-Cre<sup>tg/tg</sup> mice, respectively. The authors also thank Dr. W Ma and Dr. S Li (University of Pittsburgh) for their suggestions on the nanoparticle preparation, and Dr. LH Rigatti (University of Pittsburgh) for her histological diagnosis of mouse tissues. This study was financially supported in part by the NIH National Institute of General Medical Sciences (NIGMS) grant R01 GM144890, National Cancer Institute (NCI) grants R01 CA172090 and R01 CA258614, R21 CA259706, American Cancer Society (ACS) Research Scholar grant RSG-19-166-01-TBG, American Lung Association (ALA) Lung Cancer Discovery Award 821321, and Tobacco Related-Disease Research Program (TRDRP) Research Award T33IR6461.</p></ack><ref-list><title>References</title><ref id="bib1"><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Baxevanos</surname><given-names>P</given-names></name><name><surname>Mountzios</surname><given-names>G</given-names></name></person-group><year iso-8601-date="2018">2018</year><article-title>Novel chemotherapy regimens for advanced lung cancer: have we reached a plateau?</article-title><source>Annals of Translational Medicine</source><volume>6</volume><elocation-id>139</elocation-id><pub-id pub-id-type="doi">10.21037/atm.2018.04.04</pub-id><pub-id pub-id-type="pmid">29862228</pub-id></element-citation></ref><ref id="bib2"><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Bonnet</surname><given-names>ME</given-names></name><name><surname>Erbacher</surname><given-names>P</given-names></name><name><surname>Bolcato-Bellemin</surname><given-names>AL</given-names></name></person-group><year iso-8601-date="2008">2008</year><article-title>Systemic delivery of DNA or siRNA mediated by linear polyethylenimine (L-PEI) does not induce an inflammatory response</article-title><source>Pharmaceutical Research</source><volume>25</volume><fpage>2972</fpage><lpage>2982</lpage><pub-id pub-id-type="doi">10.1007/s11095-008-9693-1</pub-id><pub-id pub-id-type="pmid">18709489</pub-id></element-citation></ref><ref id="bib3"><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Buscail</surname><given-names>L</given-names></name><name><surname>Bournet</surname><given-names>B</given-names></name><name><surname>Vernejoul</surname><given-names>F</given-names></name><name><surname>Cambois</surname><given-names>G</given-names></name><name><surname>Lulka</surname><given-names>H</given-names></name><name><surname>Hanoun</surname><given-names>N</given-names></name><name><surname>Dufresne</surname><given-names>M</given-names></name><name><surname>Meulle</surname><given-names>A</given-names></name><name><surname>Vignolle-Vidoni</surname><given-names>A</given-names></name><name><surname>Ligat</surname><given-names>L</given-names></name><name><surname>Saint-Laurent</surname><given-names>N</given-names></name><name><surname>Pont</surname><given-names>F</given-names></name><name><surname>Dejean</surname><given-names>S</given-names></name><name><surname>Gayral</surname><given-names>M</given-names></name><name><surname>Martins</surname><given-names>F</given-names></name><name><surname>Torrisani</surname><given-names>J</given-names></name><name><surname>Barbey</surname><given-names>O</given-names></name><name><surname>Gross</surname><given-names>F</given-names></name><name><surname>Guimbaud</surname><given-names>R</given-names></name><name><surname>Otal</surname><given-names>P</given-names></name><name><surname>Lopez</surname><given-names>F</given-names></name><name><surname>Tiraby</surname><given-names>G</given-names></name><name><surname>Cordelier</surname><given-names>P</given-names></name></person-group><year iso-8601-date="2015">2015</year><article-title>First-in-man phase 1 clinical trial of gene therapy for advanced pancreatic cancer: safety, biodistribution, and preliminary clinical findings</article-title><source>Molecular Therapy</source><volume>23</volume><fpage>779</fpage><lpage>789</lpage><pub-id pub-id-type="doi">10.1038/mt.2015.1</pub-id><pub-id pub-id-type="pmid">25586689</pub-id></element-citation></ref><ref id="bib4"><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Commisso</surname><given-names>C</given-names></name><name><surname>Davidson</surname><given-names>SM</given-names></name><name><surname>Soydaner-Azeloglu</surname><given-names>RG</given-names></name><name><surname>Parker</surname><given-names>SJ</given-names></name><name><surname>Kamphorst</surname><given-names>JJ</given-names></name><name><surname>Hackett</surname><given-names>S</given-names></name><name><surname>Grabocka</surname><given-names>E</given-names></name><name><surname>Nofal</surname><given-names>M</given-names></name><name><surname>Drebin</surname><given-names>JA</given-names></name><name><surname>Thompson</surname><given-names>CB</given-names></name><name><surname>Rabinowitz</surname><given-names>JD</given-names></name><name><surname>Metallo</surname><given-names>CM</given-names></name><name><surname>Vander Heiden</surname><given-names>MG</given-names></name><name><surname>Bar-Sagi</surname><given-names>D</given-names></name></person-group><year iso-8601-date="2013">2013</year><article-title>Macropinocytosis of protein is an amino acid supply route in Ras-transformed cells</article-title><source>Nature</source><volume>497</volume><fpage>633</fpage><lpage>637</lpage><pub-id pub-id-type="doi">10.1038/nature12138</pub-id><pub-id pub-id-type="pmid">23665962</pub-id></element-citation></ref><ref id="bib5"><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Doroshow</surname><given-names>DB</given-names></name><name><surname>Sanmamed</surname><given-names>MF</given-names></name><name><surname>Hastings</surname><given-names>K</given-names></name><name><surname>Politi</surname><given-names>K</given-names></name><name><surname>Rimm</surname><given-names>DL</given-names></name><name><surname>Chen</surname><given-names>L</given-names></name><name><surname>Melero</surname><given-names>I</given-names></name><name><surname>Schalper</surname><given-names>KA</given-names></name><name><surname>Herbst</surname><given-names>RS</given-names></name></person-group><year iso-8601-date="2019">2019</year><article-title>Immunotherapy in non-small cell lung cancer: facts and hopes</article-title><source>Clinical Cancer Research</source><volume>25</volume><fpage>4592</fpage><lpage>4602</lpage><pub-id pub-id-type="doi">10.1158/1078-0432.CCR-18-1538</pub-id><pub-id pub-id-type="pmid">30824587</pub-id></element-citation></ref><ref id="bib6"><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Fu</surname><given-names>J</given-names></name><name><surname>Yan</surname><given-names>P</given-names></name><name><surname>Li</surname><given-names>S</given-names></name><name><surname>Qu</surname><given-names>Z</given-names></name><name><surname>Xiao</surname><given-names>G</given-names></name></person-group><year iso-8601-date="2010">2010</year><article-title>Molecular determinants of PDLIM2 in suppressing HTLV-I Tax-mediated tumorigenesis</article-title><source>Oncogene</source><volume>29</volume><fpage>6499</fpage><lpage>6507</lpage><pub-id pub-id-type="doi">10.1038/onc.2010.374</pub-id><pub-id pub-id-type="pmid">20838382</pub-id></element-citation></ref><ref id="bib7"><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Garassino</surname><given-names>MC</given-names></name><name><surname>Gadgeel</surname><given-names>S</given-names></name><name><surname>Esteban</surname><given-names>E</given-names></name><name><surname>Felip</surname><given-names>E</given-names></name><name><surname>Speranza</surname><given-names>G</given-names></name><name><surname>Domine</surname><given-names>M</given-names></name><name><surname>Hochmair</surname><given-names>MJ</given-names></name><name><surname>Powell</surname><given-names>S</given-names></name><name><surname>Cheng</surname><given-names>SY-S</given-names></name><name><surname>Bischoff</surname><given-names>HG</given-names></name><name><surname>Peled</surname><given-names>N</given-names></name><name><surname>Reck</surname><given-names>M</given-names></name><name><surname>Hui</surname><given-names>R</given-names></name><name><surname>Garon</surname><given-names>EB</given-names></name><name><surname>Boyer</surname><given-names>M</given-names></name><name><surname>Wei</surname><given-names>Z</given-names></name><name><surname>Burke</surname><given-names>T</given-names></name><name><surname>Pietanza</surname><given-names>MC</given-names></name><name><surname>Rodríguez-Abreu</surname><given-names>D</given-names></name></person-group><year iso-8601-date="2020">2020</year><article-title>Patient-reported outcomes following pembrolizumab or placebo plus pemetrexed and platinum in patients with previously untreated, metastatic, non-squamous non-small-cell lung cancer (KEYNOTE-189): a multicentre, double-blind, randomised, placebo-controlled, phase 3 trial</article-title><source>The Lancet. Oncology</source><volume>21</volume><fpage>387</fpage><lpage>397</lpage><pub-id pub-id-type="doi">10.1016/S1470-2045(19)30801-0</pub-id><pub-id pub-id-type="pmid">32035514</pub-id></element-citation></ref><ref id="bib8"><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Guo</surname><given-names>ZS</given-names></name><name><surname>Qu</surname><given-names>Z</given-names></name></person-group><year iso-8601-date="2021">2021</year><article-title>PDLIM2: Signaling pathways and functions in cancer suppression and host immunity</article-title><source>Biochimica et Biophysica Acta. Reviews on Cancer</source><volume>1876</volume><elocation-id>188630</elocation-id><pub-id pub-id-type="doi">10.1016/j.bbcan.2021.188630</pub-id><pub-id pub-id-type="pmid">34571051</pub-id></element-citation></ref><ref id="bib9"><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Hecht</surname><given-names>SS</given-names></name></person-group><year iso-8601-date="2002">2002</year><article-title>Cigarette smoking and lung cancer: chemical mechanisms and approaches to prevention</article-title><source>The Lancet. Oncology</source><volume>3</volume><fpage>461</fpage><lpage>469</lpage><pub-id pub-id-type="doi">10.1016/s1470-2045(02)00815-x</pub-id><pub-id pub-id-type="pmid">12147432</pub-id></element-citation></ref><ref id="bib10"><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Huang</surname><given-names>JL</given-names></name><name><surname>Jiang</surname><given-names>G</given-names></name><name><surname>Song</surname><given-names>QX</given-names></name><name><surname>Gu</surname><given-names>X</given-names></name><name><surname>Hu</surname><given-names>M</given-names></name><name><surname>Wang</surname><given-names>XL</given-names></name><name><surname>Song</surname><given-names>HH</given-names></name><name><surname>Chen</surname><given-names>LP</given-names></name><name><surname>Lin</surname><given-names>YY</given-names></name><name><surname>Jiang</surname><given-names>D</given-names></name><name><surname>Chen</surname><given-names>J</given-names></name><name><surname>Feng</surname><given-names>JF</given-names></name><name><surname>Qiu</surname><given-names>YM</given-names></name><name><surname>Jiang</surname><given-names>JY</given-names></name><name><surname>Jiang</surname><given-names>XG</given-names></name><name><surname>Chen</surname><given-names>HZ</given-names></name><name><surname>Gao</surname><given-names>XL</given-names></name></person-group><year iso-8601-date="2017">2017</year><article-title>Lipoprotein-biomimetic nanostructure enables efficient targeting delivery of siRNA to Ras-activated glioblastoma cells via macropinocytosis</article-title><source>Nature Communications</source><volume>8</volume><elocation-id>15144</elocation-id><pub-id pub-id-type="doi">10.1038/ncomms15144</pub-id><pub-id pub-id-type="pmid">28489075</pub-id></element-citation></ref><ref id="bib11"><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Kang</surname><given-names>J</given-names></name></person-group><year iso-8601-date="2015">2015</year><article-title>Genomic alterations on 8p21-p23 are the most frequent genetic events in stage I squamous cell carcinoma of the lung</article-title><source>Experimental and Therapeutic Medicine</source><volume>9</volume><fpage>345</fpage><lpage>350</lpage><pub-id pub-id-type="doi">10.3892/etm.2014.2123</pub-id><pub-id pub-id-type="pmid">25574196</pub-id></element-citation></ref><ref id="bib12"><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Kellar</surname><given-names>A</given-names></name><name><surname>Egan</surname><given-names>C</given-names></name><name><surname>Morris</surname><given-names>D</given-names></name></person-group><year iso-8601-date="2015">2015</year><article-title>Preclinical murine models for lung cancer: clinical trial applications</article-title><source>BioMed Research International</source><volume>2015</volume><elocation-id>621324</elocation-id><pub-id pub-id-type="doi">10.1155/2015/621324</pub-id><pub-id pub-id-type="pmid">26064932</pub-id></element-citation></ref><ref id="bib13"><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Leonetti</surname><given-names>A</given-names></name><name><surname>Wever</surname><given-names>B</given-names></name><name><surname>Mazzaschi</surname><given-names>G</given-names></name><name><surname>Assaraf</surname><given-names>YG</given-names></name><name><surname>Rolfo</surname><given-names>C</given-names></name><name><surname>Quaini</surname><given-names>F</given-names></name><name><surname>Tiseo</surname><given-names>M</given-names></name><name><surname>Giovannetti</surname><given-names>E</given-names></name></person-group><year iso-8601-date="2019">2019</year><article-title>Molecular basis and rationale for combining immune checkpoint inhibitors with chemotherapy in non-small cell lung cancer</article-title><source>Drug Resistance Updates</source><volume>46</volume><elocation-id>100644</elocation-id><pub-id pub-id-type="doi">10.1016/j.drup.2019.100644</pub-id><pub-id pub-id-type="pmid">31585395</pub-id></element-citation></ref><ref id="bib14"><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Li</surname><given-names>L</given-names></name><name><surname>Han</surname><given-names>L</given-names></name><name><surname>Sun</surname><given-names>F</given-names></name><name><surname>Zhou</surname><given-names>J</given-names></name><name><surname>Ohaegbulam</surname><given-names>KC</given-names></name><name><surname>Tang</surname><given-names>X</given-names></name><name><surname>Zang</surname><given-names>X</given-names></name><name><surname>Steinbrecher</surname><given-names>KA</given-names></name><name><surname>Qu</surname><given-names>Z</given-names></name><name><surname>Xiao</surname><given-names>G</given-names></name></person-group><year iso-8601-date="2018">2018</year><article-title>NF-κB RelA renders tumor-associated macrophages resistant to and capable of directly suppressing CD8<sup>+</sup> T cells for tumor promotion</article-title><source>Oncoimmunology</source><volume>7</volume><elocation-id>e1435250</elocation-id><pub-id pub-id-type="doi">10.1080/2162402X.2018.1435250</pub-id><pub-id pub-id-type="pmid">29872577</pub-id></element-citation></ref><ref id="bib15"><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Li</surname><given-names>L</given-names></name><name><surname>Sun</surname><given-names>F</given-names></name><name><surname>Han</surname><given-names>L</given-names></name><name><surname>Liu</surname><given-names>X</given-names></name><name><surname>Xiao</surname><given-names>Y</given-names></name><name><surname>Gregory</surname><given-names>AD</given-names></name><name><surname>Shapiro</surname><given-names>SD</given-names></name><name><surname>Xiao</surname><given-names>G</given-names></name><name><surname>Qu</surname><given-names>Z</given-names></name></person-group><year iso-8601-date="2021">2021</year><article-title>PDLIM2 repression by ROS in alveolar macrophages promotes lung tumorigenesis</article-title><source>JCI Insight</source><volume>6</volume><elocation-id>e144394</elocation-id><pub-id pub-id-type="doi">10.1172/jci.insight.144394</pub-id><pub-id pub-id-type="pmid">33539325</pub-id></element-citation></ref><ref id="bib16"><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Loughran</surname><given-names>G</given-names></name><name><surname>Healy</surname><given-names>NC</given-names></name><name><surname>Kiely</surname><given-names>PA</given-names></name><name><surname>Huigsloot</surname><given-names>M</given-names></name><name><surname>Kedersha</surname><given-names>NL</given-names></name><name><surname>O’Connor</surname><given-names>R</given-names></name></person-group><year iso-8601-date="2005">2005</year><article-title>Mystique is a new insulin-like growth factor-I-regulated PDZ-LIM domain protein that promotes cell attachment and migration and suppresses Anchorage-independent growth</article-title><source>Molecular Biology of the Cell</source><volume>16</volume><fpage>1811</fpage><lpage>1822</lpage><pub-id pub-id-type="doi">10.1091/mbc.e04-12-1052</pub-id><pub-id pub-id-type="pmid">15659642</pub-id></element-citation></ref><ref id="bib17"><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Macartney-Coxson</surname><given-names>DP</given-names></name><name><surname>Hood</surname><given-names>KA</given-names></name><name><surname>Shi</surname><given-names>H</given-names></name><name><surname>Ward</surname><given-names>T</given-names></name><name><surname>Wiles</surname><given-names>A</given-names></name><name><surname>O’Connor</surname><given-names>R</given-names></name><name><surname>Hall</surname><given-names>DA</given-names></name><name><surname>Lea</surname><given-names>RA</given-names></name><name><surname>Royds</surname><given-names>JA</given-names></name><name><surname>Stubbs</surname><given-names>RS</given-names></name><name><surname>Rooker</surname><given-names>S</given-names></name></person-group><year iso-8601-date="2008">2008</year><article-title>Metastatic susceptibility locus, an 8p hot-spot for tumour progression disrupted in colorectal liver metastases: 13 candidate genes examined at the DNA, mRNA and protein level</article-title><source>BMC Cancer</source><volume>8</volume><elocation-id>187</elocation-id><pub-id pub-id-type="doi">10.1186/1471-2407-8-187</pub-id><pub-id pub-id-type="pmid">18590575</pub-id></element-citation></ref><ref id="bib18"><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Matouk</surname><given-names>I</given-names></name><name><surname>Raveh</surname><given-names>E</given-names></name><name><surname>Ohana</surname><given-names>P</given-names></name><name><surname>Lail</surname><given-names>RA</given-names></name><name><surname>Gershtain</surname><given-names>E</given-names></name><name><surname>Gilon</surname><given-names>M</given-names></name><name><surname>De Groot</surname><given-names>N</given-names></name><name><surname>Czerniak</surname><given-names>A</given-names></name><name><surname>Hochberg</surname><given-names>A</given-names></name></person-group><year iso-8601-date="2013">2013</year><article-title>The increasing complexity of the oncofetal h19 gene locus: functional dissection and therapeutic intervention</article-title><source>International Journal of Molecular Sciences</source><volume>14</volume><fpage>4298</fpage><lpage>4316</lpage><pub-id pub-id-type="doi">10.3390/ijms14024298</pub-id><pub-id pub-id-type="pmid">23429271</pub-id></element-citation></ref><ref id="bib19"><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Nyamay’Antu</surname><given-names>A</given-names></name><name><surname>Dumont</surname><given-names>M</given-names></name><name><surname>Kedinger</surname><given-names>V</given-names></name><name><surname>Erbacher</surname><given-names>P</given-names></name></person-group><year iso-8601-date="2019">2019</year><article-title>Non-viral vector mediated gene delivery: the outsider to watch out for in gene therapy</article-title><source>Cell and Gene Therapy Insights</source><volume>5</volume><fpage>51</fpage><lpage>57</lpage><pub-id pub-id-type="doi">10.18609/cgti.2019.007</pub-id></element-citation></ref><ref id="bib20"><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Qu</surname><given-names>Z</given-names></name><name><surname>Fu</surname><given-names>J</given-names></name><name><surname>Yan</surname><given-names>P</given-names></name><name><surname>Hu</surname><given-names>J</given-names></name><name><surname>Cheng</surname><given-names>SY</given-names></name><name><surname>Xiao</surname><given-names>G</given-names></name></person-group><year iso-8601-date="2010">2010a</year><article-title>Epigenetic repression of PDZ-LIM domain-containing protein 2: implications for the biology and treatment of breast cancer</article-title><source>The Journal of Biological Chemistry</source><volume>285</volume><fpage>11786</fpage><lpage>11792</lpage><pub-id pub-id-type="doi">10.1074/jbc.M109.086561</pub-id><pub-id pub-id-type="pmid">20185823</pub-id></element-citation></ref><ref id="bib21"><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Qu</surname><given-names>Z</given-names></name><name><surname>Yan</surname><given-names>P</given-names></name><name><surname>Fu</surname><given-names>J</given-names></name><name><surname>Jiang</surname><given-names>J</given-names></name><name><surname>Grusby</surname><given-names>MJ</given-names></name><name><surname>Smithgall</surname><given-names>TE</given-names></name><name><surname>Xiao</surname><given-names>G</given-names></name></person-group><year iso-8601-date="2010">2010b</year><article-title>DNA methylation-dependent repression of PDZ-LIM domain-containing protein 2 in colon cancer and its role as a potential therapeutic target</article-title><source>Cancer Research</source><volume>70</volume><fpage>1766</fpage><lpage>1772</lpage><pub-id pub-id-type="doi">10.1158/0008-5472.CAN-09-3263</pub-id><pub-id pub-id-type="pmid">20145149</pub-id></element-citation></ref><ref id="bib22"><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Qu</surname><given-names>Z</given-names></name><name><surname>Fu</surname><given-names>J</given-names></name><name><surname>Ma</surname><given-names>H</given-names></name><name><surname>Zhou</surname><given-names>J</given-names></name><name><surname>Jin</surname><given-names>M</given-names></name><name><surname>Mapara</surname><given-names>MY</given-names></name><name><surname>Grusby</surname><given-names>MJ</given-names></name><name><surname>Xiao</surname><given-names>G</given-names></name></person-group><year iso-8601-date="2012">2012</year><article-title>PDLIM2 restricts Th1 and Th17 differentiation and prevents autoimmune disease</article-title><source>Cell &amp; Bioscience</source><volume>2</volume><elocation-id>23</elocation-id><pub-id pub-id-type="doi">10.1186/2045-3701-2-23</pub-id><pub-id pub-id-type="pmid">22731402</pub-id></element-citation></ref><ref id="bib23"><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Qu</surname><given-names>Z</given-names></name><name><surname>Sun</surname><given-names>F</given-names></name><name><surname>Zhou</surname><given-names>J</given-names></name><name><surname>Li</surname><given-names>L</given-names></name><name><surname>Shapiro</surname><given-names>SD</given-names></name><name><surname>Xiao</surname><given-names>G</given-names></name></person-group><year iso-8601-date="2015">2015</year><article-title>Interleukin-6 prevents the initiation but enhances the progression of lung cancer</article-title><source>Cancer Research</source><volume>75</volume><fpage>3209</fpage><lpage>3215</lpage><pub-id pub-id-type="doi">10.1158/0008-5472.CAN-14-3042</pub-id><pub-id pub-id-type="pmid">26122841</pub-id></element-citation></ref><ref id="bib24"><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Shi</surname><given-names>J</given-names></name><name><surname>Kantoff</surname><given-names>PW</given-names></name><name><surname>Wooster</surname><given-names>R</given-names></name><name><surname>Farokhzad</surname><given-names>OC</given-names></name></person-group><year iso-8601-date="2017">2017</year><article-title>Cancer nanomedicine: progress, challenges and opportunities</article-title><source>Nature Reviews. Cancer</source><volume>17</volume><fpage>20</fpage><lpage>37</lpage><pub-id pub-id-type="doi">10.1038/nrc.2016.108</pub-id><pub-id pub-id-type="pmid">27834398</pub-id></element-citation></ref><ref id="bib25"><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Siegel</surname><given-names>RL</given-names></name><name><surname>Miller</surname><given-names>KD</given-names></name><name><surname>Fuchs</surname><given-names>HE</given-names></name><name><surname>Jemal</surname><given-names>A</given-names></name></person-group><year iso-8601-date="2022">2022</year><article-title>Cancer statistics, 2022</article-title><source>CA</source><volume>72</volume><fpage>7</fpage><lpage>33</lpage><pub-id pub-id-type="doi">10.3322/caac.21708</pub-id><pub-id pub-id-type="pmid">35020204</pub-id></element-citation></ref><ref id="bib26"><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Steinbrecher</surname><given-names>KA</given-names></name><name><surname>Harmel-Laws</surname><given-names>E</given-names></name><name><surname>Sitcheran</surname><given-names>R</given-names></name><name><surname>Baldwin</surname><given-names>AS</given-names></name></person-group><year iso-8601-date="2008">2008</year><article-title>Loss of epithelial RelA results in deregulated intestinal proliferative/apoptotic homeostasis and susceptibility to inflammation</article-title><source>Journal of Immunology</source><volume>180</volume><fpage>2588</fpage><lpage>2599</lpage><pub-id pub-id-type="doi">10.4049/jimmunol.180.4.2588</pub-id><pub-id pub-id-type="pmid">18250470</pub-id></element-citation></ref><ref id="bib27"><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Sun</surname><given-names>F</given-names></name><name><surname>Xiao</surname><given-names>Y</given-names></name><name><surname>Qu</surname><given-names>Z</given-names></name></person-group><year iso-8601-date="2015">2015</year><article-title>Oncovirus Kaposi sarcoma herpesvirus (KSHV) represses tumor suppressor PDLIM2 to persistently activate nuclear factor κB (NF-κB) and STAT3 transcription factors for tumorigenesis and tumor maintenance</article-title><source>The Journal of Biological Chemistry</source><volume>290</volume><fpage>7362</fpage><lpage>7368</lpage><pub-id pub-id-type="doi">10.1074/jbc.C115.637918</pub-id><pub-id pub-id-type="pmid">25681443</pub-id></element-citation></ref><ref id="bib28"><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Sun</surname><given-names>F</given-names></name><name><surname>Qu</surname><given-names>Z</given-names></name><name><surname>Xiao</surname><given-names>Y</given-names></name><name><surname>Zhou</surname><given-names>J</given-names></name><name><surname>Burns</surname><given-names>TF</given-names></name><name><surname>Stabile</surname><given-names>LP</given-names></name><name><surname>Siegfried</surname><given-names>JM</given-names></name><name><surname>Xiao</surname><given-names>G</given-names></name></person-group><year iso-8601-date="2016">2016</year><article-title>NF-κB1 p105 suppresses lung tumorigenesis through the Tpl2 kinase but independently of its NF-κB function</article-title><source>Oncogene</source><volume>35</volume><fpage>2299</fpage><lpage>2310</lpage><pub-id pub-id-type="doi">10.1038/onc.2015.299</pub-id><pub-id pub-id-type="pmid">26300007</pub-id></element-citation></ref><ref id="bib29"><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Sun</surname><given-names>F</given-names></name><name><surname>Li</surname><given-names>L</given-names></name><name><surname>Yan</surname><given-names>P</given-names></name><name><surname>Zhou</surname><given-names>J</given-names></name><name><surname>Shapiro</surname><given-names>SD</given-names></name><name><surname>Xiao</surname><given-names>G</given-names></name><name><surname>Qu</surname><given-names>Z</given-names></name></person-group><year iso-8601-date="2019">2019</year><article-title>Causative role of PDLIM2 epigenetic repression in lung cancer and therapeutic resistance</article-title><source>Nature Communications</source><volume>10</volume><elocation-id>5324</elocation-id><pub-id pub-id-type="doi">10.1038/s41467-019-13331-x</pub-id><pub-id pub-id-type="pmid">31757943</pub-id></element-citation></ref><ref id="bib30"><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Sun</surname><given-names>F</given-names></name><name><surname>Guo</surname><given-names>ZS</given-names></name><name><surname>Gregory</surname><given-names>AD</given-names></name><name><surname>Shapiro</surname><given-names>SD</given-names></name><name><surname>Xiao</surname><given-names>G</given-names></name><name><surname>Qu</surname><given-names>Z</given-names></name></person-group><year iso-8601-date="2020">2020</year><article-title>Dual but not single PD-1 or TIM-3 blockade enhances oncolytic virotherapy in refractory lung cancer</article-title><source>Journal for Immunotherapy of Cancer</source><volume>8</volume><elocation-id>e000294</elocation-id><pub-id pub-id-type="doi">10.1136/jitc-2019-000294</pub-id><pub-id pub-id-type="pmid">32461344</pub-id></element-citation></ref><ref id="bib31"><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Sun</surname><given-names>F</given-names></name><name><surname>Li</surname><given-names>L</given-names></name><name><surname>Xiao</surname><given-names>Y</given-names></name><name><surname>Gregory</surname><given-names>AD</given-names></name><name><surname>Shapiro</surname><given-names>SD</given-names></name><name><surname>Xiao</surname><given-names>G</given-names></name><name><surname>Qu</surname><given-names>Z</given-names></name></person-group><year iso-8601-date="2021">2021</year><article-title>Alveolar macrophages inherently express programmed death-1 ligand 1 for optimal protective immunity and tolerance</article-title><source>Journal of Immunology</source><volume>207</volume><fpage>110</fpage><lpage>114</lpage><pub-id pub-id-type="doi">10.4049/jimmunol.2100046</pub-id><pub-id pub-id-type="pmid">34135059</pub-id></element-citation></ref><ref id="bib32"><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Swalwell</surname><given-names>JI</given-names></name><name><surname>Vocke</surname><given-names>CD</given-names></name><name><surname>Yang</surname><given-names>Y</given-names></name><name><surname>Walker</surname><given-names>JR</given-names></name><name><surname>Grouse</surname><given-names>L</given-names></name><name><surname>Myers</surname><given-names>SH</given-names></name><name><surname>Gillespie</surname><given-names>JW</given-names></name><name><surname>Bostwick</surname><given-names>DG</given-names></name><name><surname>Duray</surname><given-names>PH</given-names></name><name><surname>Linehan</surname><given-names>WM</given-names></name><name><surname>Emmert‐Buck</surname><given-names>MR</given-names></name></person-group><year iso-8601-date="2002">2002</year><article-title>Determination of a minimal deletion interval on chromosome band 8p21 in sporadic prostate cancer</article-title><source>Genes, Chromosomes and Cancer</source><volume>33</volume><fpage>201</fpage><lpage>205</lpage><pub-id pub-id-type="doi">10.1002/gcc.10015</pub-id></element-citation></ref><ref id="bib33"><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Tanaka</surname><given-names>T</given-names></name><name><surname>Soriano</surname><given-names>MA</given-names></name><name><surname>Grusby</surname><given-names>MJ</given-names></name></person-group><year iso-8601-date="2005">2005</year><article-title>SLIM is a nuclear ubiquitin E3 ligase that negatively regulates STAT signaling</article-title><source>Immunity</source><volume>22</volume><fpage>729</fpage><lpage>736</lpage><pub-id pub-id-type="doi">10.1016/j.immuni.2005.04.008</pub-id><pub-id pub-id-type="pmid">15963787</pub-id></element-citation></ref><ref id="bib34"><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Tanaka</surname><given-names>T</given-names></name><name><surname>Grusby</surname><given-names>MJ</given-names></name><name><surname>Kaisho</surname><given-names>T</given-names></name></person-group><year iso-8601-date="2007">2007</year><article-title>PDLIM2-mediated termination of transcription factor NF-kappaB activation by intranuclear sequestration and degradation of the p65 subunit</article-title><source>Nature Immunology</source><volume>8</volume><fpage>584</fpage><lpage>591</lpage><pub-id pub-id-type="doi">10.1038/ni1464</pub-id><pub-id pub-id-type="pmid">17468759</pub-id></element-citation></ref><ref id="bib35"><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Torrado</surname><given-names>M</given-names></name><name><surname>Senatorov</surname><given-names>VV</given-names></name><name><surname>Trivedi</surname><given-names>R</given-names></name><name><surname>Fariss</surname><given-names>RN</given-names></name><name><surname>Tomarev</surname><given-names>SI</given-names></name></person-group><year iso-8601-date="2004">2004</year><article-title>Pdlim2, a novel PDZ–LIM domain protein, interacts with α-actinins and filamin A</article-title><source>Investigative Opthalmology &amp; Visual Science</source><volume>45</volume><elocation-id>3955</elocation-id><pub-id pub-id-type="doi">10.1167/iovs.04-0721</pub-id></element-citation></ref><ref id="bib36"><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Vanoirbeek</surname><given-names>E</given-names></name><name><surname>Eelen</surname><given-names>G</given-names></name><name><surname>Verlinden</surname><given-names>L</given-names></name><name><surname>Carmeliet</surname><given-names>G</given-names></name><name><surname>Mathieu</surname><given-names>C</given-names></name><name><surname>Bouillon</surname><given-names>R</given-names></name><name><surname>O’Connor</surname><given-names>R</given-names></name><name><surname>Xiao</surname><given-names>G</given-names></name><name><surname>Verstuyf</surname><given-names>A</given-names></name></person-group><year iso-8601-date="2014">2014</year><article-title>PDLIM2 expression is driven by vitamin D and is involved in the pro-adhesion, and anti-migration and -invasion activity of vitamin D</article-title><source>Oncogene</source><volume>33</volume><fpage>1904</fpage><lpage>1911</lpage><pub-id pub-id-type="doi">10.1038/onc.2013.123</pub-id><pub-id pub-id-type="pmid">23584482</pub-id></element-citation></ref><ref id="bib37"><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Wistuba</surname><given-names>II</given-names></name><name><surname>Behrens</surname><given-names>C</given-names></name><name><surname>Virmani</surname><given-names>AK</given-names></name><name><surname>Milchgrub</surname><given-names>S</given-names></name><name><surname>Syed</surname><given-names>S</given-names></name><name><surname>Lam</surname><given-names>S</given-names></name><name><surname>Mackay</surname><given-names>B</given-names></name><name><surname>Minna</surname><given-names>JD</given-names></name><name><surname>Gazdar</surname><given-names>AF</given-names></name></person-group><year iso-8601-date="1999">1999</year><article-title>Allelic losses at chromosome 8p21-23 are early and frequent events in the pathogenesis of lung cancer</article-title><source>Cancer Research</source><volume>59</volume><fpage>1973</fpage><lpage>1979</lpage><pub-id pub-id-type="pmid">10213509</pub-id></element-citation></ref><ref id="bib38"><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Wurster</surname><given-names>KD</given-names></name><name><surname>Hummel</surname><given-names>F</given-names></name><name><surname>Richter</surname><given-names>J</given-names></name><name><surname>Giefing</surname><given-names>M</given-names></name><name><surname>Hartmann</surname><given-names>S</given-names></name><name><surname>Hansmann</surname><given-names>M-L</given-names></name><name><surname>Kreher</surname><given-names>S</given-names></name><name><surname>Köchert</surname><given-names>K</given-names></name><name><surname>Krappmann</surname><given-names>D</given-names></name><name><surname>Klapper</surname><given-names>W</given-names></name><name><surname>Hummel</surname><given-names>M</given-names></name><name><surname>Wenzel</surname><given-names>S-S</given-names></name><name><surname>Lenz</surname><given-names>G</given-names></name><name><surname>Janz</surname><given-names>M</given-names></name><name><surname>Dörken</surname><given-names>B</given-names></name><name><surname>Siebert</surname><given-names>R</given-names></name><name><surname>Mathas</surname><given-names>S</given-names></name></person-group><year iso-8601-date="2017">2017</year><article-title>Inactivation of the putative ubiquitin-E3 ligase PDLIM2 in classical Hodgkin and anaplastic large cell lymphoma</article-title><source>Leukemia</source><volume>31</volume><fpage>602</fpage><lpage>613</lpage><pub-id pub-id-type="doi">10.1038/leu.2016.238</pub-id><pub-id pub-id-type="pmid">27538486</pub-id></element-citation></ref><ref id="bib39"><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Xiao</surname><given-names>G</given-names></name><name><surname>Fu</surname><given-names>J</given-names></name></person-group><year iso-8601-date="2011">2011</year><article-title>NF-κB and cancer: a paradigm of Yin-Yang</article-title><source>American Journal of Cancer Research</source><volume>1</volume><fpage>192</fpage><lpage>221</lpage><pub-id pub-id-type="pmid">21969033</pub-id></element-citation></ref><ref id="bib40"><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Yan</surname><given-names>P</given-names></name><name><surname>Fu</surname><given-names>J</given-names></name><name><surname>Qu</surname><given-names>Z</given-names></name><name><surname>Li</surname><given-names>S</given-names></name><name><surname>Tanaka</surname><given-names>T</given-names></name><name><surname>Grusby</surname><given-names>MJ</given-names></name><name><surname>Xiao</surname><given-names>G</given-names></name></person-group><year iso-8601-date="2009">2009a</year><article-title>PDLIM2 suppresses human T-cell leukemia virus type I Tax-mediated tumorigenesis by targeting Tax into the nuclear matrix for proteasomal degradation</article-title><source>Blood</source><volume>113</volume><fpage>4370</fpage><lpage>4380</lpage><pub-id pub-id-type="doi">10.1182/blood-2008-10-185660</pub-id><pub-id pub-id-type="pmid">19131544</pub-id></element-citation></ref><ref id="bib41"><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Yan</surname><given-names>P</given-names></name><name><surname>Qu</surname><given-names>Z</given-names></name><name><surname>Ishikawa</surname><given-names>C</given-names></name><name><surname>Mori</surname><given-names>N</given-names></name><name><surname>Xiao</surname><given-names>G</given-names></name></person-group><year iso-8601-date="2009">2009b</year><article-title>Human T-cell leukemia virus type I-mediated repression of PDZ-LIM domain-containing protein 2 involves DNA methylation but independent of the viral oncoprotein tax</article-title><source>Neoplasia</source><volume>11</volume><fpage>1036</fpage><lpage>1041</lpage><pub-id pub-id-type="doi">10.1593/neo.09752</pub-id><pub-id pub-id-type="pmid">19794962</pub-id></element-citation></ref><ref id="bib42"><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Yang</surname><given-names>J</given-names></name><name><surname>Hendricks</surname><given-names>W</given-names></name><name><surname>Liu</surname><given-names>G</given-names></name><name><surname>McCaffery</surname><given-names>JM</given-names></name><name><surname>Kinzler</surname><given-names>KW</given-names></name><name><surname>Huso</surname><given-names>DL</given-names></name><name><surname>Vogelstein</surname><given-names>B</given-names></name><name><surname>Zhou</surname><given-names>S</given-names></name></person-group><year iso-8601-date="2013">2013</year><article-title>A nanoparticle formulation that selectively transfects metastatic tumors in mice</article-title><source>PNAS</source><volume>110</volume><fpage>14717</fpage><lpage>14722</lpage><pub-id pub-id-type="doi">10.1073/pnas.1313330110</pub-id><pub-id pub-id-type="pmid">23959886</pub-id></element-citation></ref><ref id="bib43"><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Yu</surname><given-names>H</given-names></name><name><surname>Pardoll</surname><given-names>D</given-names></name><name><surname>Jove</surname><given-names>R</given-names></name></person-group><year iso-8601-date="2009">2009</year><article-title>STATs in cancer inflammation and immunity: a leading role for STAT3</article-title><source>Nature Reviews. Cancer</source><volume>9</volume><fpage>798</fpage><lpage>809</lpage><pub-id pub-id-type="doi">10.1038/nrc2734</pub-id><pub-id pub-id-type="pmid">19851315</pub-id></element-citation></ref><ref id="bib44"><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Zappasodi</surname><given-names>R</given-names></name><name><surname>Merghoub</surname><given-names>T</given-names></name><name><surname>Wolchok</surname><given-names>JD</given-names></name></person-group><year iso-8601-date="2018">2018</year><article-title>Emerging concepts for immune checkpoint blockade-based combination therapies</article-title><source>Cancer Cell</source><volume>34</volume><elocation-id>690</elocation-id><pub-id pub-id-type="doi">10.1016/j.ccell.2018.09.008</pub-id><pub-id pub-id-type="pmid">30300584</pub-id></element-citation></ref><ref id="bib45"><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Zhou</surname><given-names>J</given-names></name><name><surname>Qu</surname><given-names>Z</given-names></name><name><surname>Yan</surname><given-names>S</given-names></name><name><surname>Sun</surname><given-names>F</given-names></name><name><surname>Whitsett</surname><given-names>JA</given-names></name><name><surname>Shapiro</surname><given-names>SD</given-names></name><name><surname>Xiao</surname><given-names>G</given-names></name></person-group><year iso-8601-date="2015">2015</year><article-title>Differential roles of STAT3 in the initiation and growth of lung cancer</article-title><source>Oncogene</source><volume>34</volume><fpage>3804</fpage><lpage>3814</lpage><pub-id pub-id-type="doi">10.1038/onc.2014.318</pub-id><pub-id pub-id-type="pmid">25284582</pub-id></element-citation></ref><ref id="bib46"><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Zhou</surname><given-names>J</given-names></name><name><surname>Qu</surname><given-names>Z</given-names></name><name><surname>Sun</surname><given-names>F</given-names></name><name><surname>Han</surname><given-names>L</given-names></name><name><surname>Li</surname><given-names>L</given-names></name><name><surname>Yan</surname><given-names>S</given-names></name><name><surname>Stabile</surname><given-names>LP</given-names></name><name><surname>Chen</surname><given-names>LF</given-names></name><name><surname>Siegfried</surname><given-names>JM</given-names></name><name><surname>Xiao</surname><given-names>G</given-names></name></person-group><year iso-8601-date="2017">2017</year><article-title>Myeloid STAT3 promotes lung tumorigenesis by transforming tumor immunosurveillance into tumor-promoting inflammation</article-title><source>Cancer Immunology Research</source><volume>5</volume><fpage>257</fpage><lpage>268</lpage><pub-id pub-id-type="doi">10.1158/2326-6066.CIR-16-0073</pub-id><pub-id pub-id-type="pmid">28108629</pub-id></element-citation></ref><ref id="bib47"><element-citation publication-type="journal"><person-group person-group-type="author"><name><surname>Zou</surname><given-names>W</given-names></name><name><surname>Wolchok</surname><given-names>JD</given-names></name><name><surname>Chen</surname><given-names>L</given-names></name></person-group><year iso-8601-date="2016">2016</year><article-title>PD-L1 (B7-H1) and PD-1 pathway blockade for cancer therapy: Mechanisms, response biomarkers, and combinations</article-title><source>Science Translational Medicine</source><volume>8</volume><elocation-id>328rv324</elocation-id><pub-id pub-id-type="doi">10.1126/scitranslmed.aad7118</pub-id><pub-id pub-id-type="pmid">26936508</pub-id></element-citation></ref></ref-list></back><sub-article article-type="editor-report" id="sa0"><front-stub><article-id pub-id-type="doi">10.7554/eLife.89638.3.sa0</article-id><title-group><article-title>eLife assessment</article-title></title-group><contrib-group><contrib contrib-type="author"><name><surname>Rothlin</surname><given-names>Carla V</given-names></name><role specific-use="editor">Reviewing Editor</role><aff><institution>Yale University</institution><country>United States</country></aff></contrib></contrib-group><kwd-group kwd-group-type="evidence-strength"><kwd>Compelling</kwd></kwd-group><kwd-group kwd-group-type="claim-importance"><kwd>Valuable</kwd></kwd-group></front-stub><body><p>This study presents a <bold>valuable</bold> finding for the immunotherapy of cancer. The data support the role of PDLIM2 as a tumor suppressor, and more immediately, its relevance for strategies to improve the efficacy of immunotherapy. The evidence supporting the conclusions is <bold>compelling</bold> and the work will be of interest to biomedical scientists working on cancer immunology.</p></body></sub-article><sub-article article-type="referee-report" id="sa1"><front-stub><article-id pub-id-type="doi">10.7554/eLife.89638.3.sa1</article-id><title-group><article-title>Reviewer #1 (Public Review):</article-title></title-group><contrib-group><contrib contrib-type="author"><anonymous/><role specific-use="referee">Reviewer</role></contrib></contrib-group></front-stub><body><p>The manuscript by Sun and colleagues followed on their previous findings on the tumor suppressive role of PDLIM2 in lung cancer. They further investigated various mechanisms, including epigenetic modification, copy number variation and LOH, that led to the decrease expression of PDLIM2 in human lung cancer. Next, they used nanoparticle-based approach to specifically restore the expression in mouse lung tumors. They showed that over-expression PDLIM2 in lung cancer repressed its progression in vivo. Also, this treatment could synergize with chemotherapy and checkpoint inhibitor anti-PD-1. Overall, the results were quite promising and convincing, using a treatment combination that would appear to have potential for clinical implementation.</p></body></sub-article><sub-article article-type="referee-report" id="sa2"><front-stub><article-id pub-id-type="doi">10.7554/eLife.89638.3.sa2</article-id><title-group><article-title>Reviewer #2 (Public Review):</article-title></title-group><contrib-group><contrib contrib-type="author"><anonymous/><role specific-use="referee">Reviewer</role></contrib></contrib-group></front-stub><body><p>Summary: The authors have previously demonstrated that the E3 ligase PDLIM2 inhibits NF-kB and STAT3 and is epigenetically repressed in human lung cancers (Sun et al. Nat. Comm. 2019 10: 5324); therefore, PDLIM2 is a tumor suppressor in lung cancer. In this manuscript, they follow up on their previous findings and show that expression of PDLIM2 is downregulated in human lung cancers by both genetic deletion and promoter methylation. They further describe a novel approach to restore the expression of PDLIM2 in mouse lung tumors by systemically administering PDLIM2 plasmids encapsulated in nanoparticles (termed &quot;nanoPDLIM2&quot;). The nanoPDLIM2 approach was shown to exhibit efficacy with low toxicity in a urethane-induced mouse lung cancer model. The authors further demonstrated synergy of nanoPDLIM2 with chemotherapy and PD-1 blockade immunotherapy. The combination therapy of nanoPDLIM2, chemotherapy and immunotherapy proved most effective with complete tumor remission in 60% of mice. Mechanistically, nanoPDLIM2 upregulated MHC-I expression, enhanced CD4/CD8 T cell activation and tumor infiltration, and suppressed MDR1 induction and nuclear expression of STAT3, RelA and prosurvival genes in tumors. Overall, this study is important because it reinforces the critical roles of PDLIM2 in suppressing lung cancer, and also identifies a potential approach to restoring PDLIM2 expression in lung tumors. The experiments were well executed; the data are convincing and support the conclusions made by the authors.</p></body></sub-article><sub-article article-type="author-comment" id="sa3"><front-stub><article-id pub-id-type="doi">10.7554/eLife.89638.3.sa3</article-id><title-group><article-title>Author response</article-title></title-group><contrib-group><contrib contrib-type="author"><name><surname>Sun</surname><given-names>Fan</given-names></name><role specific-use="author">Author</role><aff><institution>University of Pittsburgh</institution><addr-line><named-content content-type="city">Pittsburgh, PA</named-content></addr-line><country>United States</country></aff></contrib><contrib contrib-type="author"><name><surname>Yan</surname><given-names>Pengrong</given-names></name><role specific-use="author">Author</role><aff><institution>University of Pittsburgh</institution><addr-line><named-content content-type="city">Pittsburgh</named-content></addr-line><country>United States</country></aff></contrib><contrib contrib-type="author"><name><surname>Xiao</surname><given-names>Yadong</given-names></name><role specific-use="author">Author</role><aff><institution>University of Southern California</institution><addr-line><named-content content-type="city">Los Angeles</named-content></addr-line><country>United States</country></aff></contrib><contrib contrib-type="author"><name><surname>Zhang</surname><given-names>Hongqiao</given-names></name><role specific-use="author">Author</role><aff><institution>University of Southern California</institution><addr-line><named-content content-type="city">Los Angeles</named-content></addr-line><country>United States</country></aff></contrib><contrib contrib-type="author"><name><surname>Shapiro</surname><given-names>Steven D</given-names></name><role specific-use="author">Author</role><aff><institution>University of Southern California</institution><addr-line><named-content content-type="city">Los Angeles</named-content></addr-line><country>United States</country></aff></contrib><contrib contrib-type="author"><name><surname>Xiao</surname><given-names>Gutian</given-names></name><role specific-use="author">Author</role><aff><institution>University of Southern California</institution><addr-line><named-content content-type="city">Los Angeles</named-content></addr-line><country>United States</country></aff></contrib><contrib contrib-type="author"><name><surname>Qu</surname><given-names>Zhaoxia</given-names></name><role specific-use="author">Author</role><aff><institution>University of Southern California</institution><addr-line><named-content content-type="city">Los Angeles</named-content></addr-line><country>United States</country></aff></contrib></contrib-group></front-stub><body><disp-quote content-type="editor-comment"><p><bold>Reviewer #3 (Public Review):</bold></p><p>Strengths:</p><p>NanoPDLIM2, nanotechnologies that efficiently deliver lentivirus overcomes resistance to chemotherapy and anti-PD-1 immunotherapy. This is a new strategy for enhancing the efficiency of immune checkpoint inhibitors.</p><p>This finding is important from a clinical translation perspective, but I have several minor concerns.</p><p>Weaknesses:</p><p>1. Please describe the mechanism of increased MHC class I and PD-L1 by PDLIM2.</p></disp-quote><p>Our previous studies showed that PDLIM2 induces MHC-I induction through decreasing STAT3 whereas it is dispensable for PD-L1 expression (Sun et al, 2019, PMID: 31757943). In line with the studies, PD-L1 is induced by chemotherapeutic drugs, but not by NanoPDLIM2 (Figure 6A). Together with the roles of PDLIM2 in repressing RelA-dependent MDR1 induction by chemotherapy and in preventing expression of cell survival and proliferation genes by targeting both RelA and STAT3 (Sun et al, 2019, PMID: 31757943), further providing the mechanistic basis for the combination and synergistic effect of nanoPDLIM2, anti-PD-1 and chemo drugs. The improvement has now been further incorporated.</p><disp-quote content-type="editor-comment"><p>1. Please describe the mechanism of decreased MDR1, nuclear RelA and STAT3 by PDLIM2.</p></disp-quote><p>Our previous studies demonstrated that PDLIM2 reduces MDR1 expression by degrading nuclear RelA (Sun et al, 2019, PMID: 31757943).</p><disp-quote content-type="editor-comment"><p>1. Please determine whether PDLIM2 expression directly impacts immune cells (function and number)?</p></disp-quote><p>As shown in Figure 5, NanoPDLIM2 increased the number and activation of tumor infiltrating lymphocytes (TILs); and in prior study, PDLIM2 knockout repressed the numbers of TILs and inhibited the activation of CD4+ and CD8+ T cells, while its re-expression in lung tumors led to T cell activation (Sun et al. 2019, PMID: 31757943). On the other hand, selective deletion of PDLIM2 in immune cells and in particular myeloid cells repressed the numbers and activation of TILs (Li et al, 2021, PMID: 33539325; PMCID: PMC8021114). Thus, PDLIM2 may impact immune cells both directly and indirectly, particularly when nanoparticles can deliver PDLIM2 into both tumor cells and tumor-associated immune cells (despite PDLIM2 is delivered into much fewer immune cells compared to tumor cells).</p><disp-quote content-type="editor-comment"><p>1. What is the efficiency of PDLIM2 delivery? Does delivery efficiency determine anti-tumor effect?</p></disp-quote><p>As shown in the manuscript, the dose of PDLIM2 used already shows high delivery (20-30 copies per tumor cell in Figure 3B) and therapeutic efficacy in the mouse model of refractory lung cancer and particularly when being combined with anti-PD-1 and chemo drugs. It is of interest to test different doses in the model for the best delivery and efficacy, which is actively being pursued in the lab.</p><disp-quote content-type="editor-comment"><p>1. Authors used a non-immunogenic tumor model. Can you demonstrate the combination effect with PDLIM2 in immunogenic lung cancer models to determine whether the combination of PDLIM2 with anti-PD-1 Ab confers a synergistic effect without chemotherapy?</p></disp-quote><p>Yes, it is of interest to demonstrate the combination of PDLIM2 and anti-PD-1 in immunogenic lung cancer models with chemotherapy although a synergy is highly expected. The greatest challenge in the lung cancer field is the low response of non-immunogenic tumor, which is the focus of the current manuscript.</p><disp-quote content-type="editor-comment"><p>1. On page 11, % change can make one over-interpret data.</p></disp-quote><p>The % change has been removed from the manuscript.</p><disp-quote content-type="editor-comment"><p>1. In Figure 5, what is the difference between 5A and 5D?</p></disp-quote><p>Figure 5A shows the increase of TILs by nanoPDLIM2 in animals that did not receive PD-1 blockade immunotherapy, Figure 5D shows the increase of TILs by nanoPDLIM2 in animals received PD-1 blockade immunotherapy.</p><disp-quote content-type="editor-comment"><p>1. It is unclear whether PDLIM2 confers an additive or a synergistic effect with anti-PD-1/chemo.</p></disp-quote><p>PDLIM2 nanotherapy confers a synergistic effect with chemotherapy on increasing apoptosis in tumors (Figure 4B) and tumor reduction (Figure 4A and 6E, left panel, tumor number), confers a synergistic effect with antiPD-1 on increasing CD4+ and CD8+ TILs (Figure 5A and 5D), and apoptosis in tumors (Figure 5F), and an additive effect on tumor reduction (Figure 5C and 6E), and confers a synergistic effect with chemotherapy plus anti-PD-1 on increasing CD4+ and CD8+ TILs (Figure 5A and 6F) and tumor reduction (Figure 6E, left panel, tumor number).</p><disp-quote content-type="editor-comment"><p>1. Have the authors tested any toxicity in normal lungs?</p></disp-quote><p>Same to tumor lungs, no obvious toxicity has been observed in normal lungs.</p><disp-quote content-type="editor-comment"><p><bold>Reviewer #1 (Recommendations For The Authors):</bold></p><p>The paper is clear and well-written, although some minor edits are needed. For example, the title could be changed to reflect both human and mouse studies in the manuscript for more general readers. Moreover, 'lung cancer' should be used instead of 'lung cancers'. The manuscript could be further improved by validating their findings in a different model and particularly the syngeneic model of metastatic lung cancer for a better overall survival time by the new combination therapy, given the fact that clinical trial studies usually start in patients with metastatic tumors. But this is optional because the therapeutic effect on primary lung cancer is already significant.</p></disp-quote><p>Thanks for the correction and wonderful suggestions. The “lung cancers” were replaced with “lung cancer”, and the title was changed to “Improving PD-1 blockade plus chemotherapy for complete remission of lung cancer by nanoPDLIM2”.</p><disp-quote content-type="editor-comment"><p><bold>Reviewer #2 (Recommendations For The Authors):</bold></p><p>1. What is the rationale for i.v. injection of nanoparticles containing PDLIM2 plasmid? Intranasal administration of nanoparticles may potentially target nanoPDLIM2 specifically to the lungs. Another potential option is intranasal infection of mice with adenovirus expressing PDLIM2.</p></disp-quote><p>The rationale for i.v. injection of nanoPDLIM2 is that iv injected nanoPDLIM2 first reach into the lung and more importantly tumor tissues as well as the convenience and high efficacy of mouse i.v. injection, particularly when multiple injections are needed. Mice are much less stressful compared to other intranasal or even intratracheal injection. Adenovirus can be used only once, because it will initiate ant-viral immune response in mice.</p><disp-quote content-type="editor-comment"><p>1. The authors examine PDLIM2 expression in lung tumors 1 week after i.v. administration of nanoparticles (Fig. 3A). Do all tumor cells express PDLIM2 after nanoPDLIM2 treatment? How long does PDLIM2 persist in the tumors? The kinetics of PDLIM2 expression may be informative to help interpret the results from the various combination treatments given to the mice. Multiple rounds of nanoPDLIM2 treatment could potentially improve the efficacy of the treatment.</p></disp-quote><p>For all the sections examined (n=6), PDLIM2 was re-expressed in most but not all lung cancer cells at 1-week of the i.v administration. Accordingly, nanoPDLIM2 was injected weekly. We are examining if PDLIM2 reexpression can last longer. We are also testing the best dose with the best efficacy.</p><disp-quote content-type="editor-comment"><p>1. Does the plasmid DNA from nanoparticles trigger an innate immune response in the lung that contributes to anti-tumor responses?</p></disp-quote><p>In line with previous studies showing no effect on immune responses (Bonnet et al. 2008. PMID: 18709489), the dose used in current study does not significantly affect immune cells in the lung, suggesting no obvious effect of nanoparticles with empty plasmid on innate immune response.</p><disp-quote content-type="editor-comment"><p>1. In Fig. 4, does the combination of nanoPDLIM2 and chemotherapy diminish STAT3 nuclear staining?</p></disp-quote><p>NanoPDLIM2 alone decreased nuclear STAT 3 in tumor cells (Figure 2C), it also diminished nuclear STAT3 in tumor cells with the combination of chemotherapy.</p></body></sub-article></article>